Query 030782
Match_columns 171
No_of_seqs 205 out of 1236
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:29:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.5 1.1E-14 2.3E-19 96.1 5.2 55 49-103 4-60 (60)
2 PF00010 HLH: Helix-loop-helix 99.5 1.5E-14 3.3E-19 94.8 4.4 50 50-99 2-55 (55)
3 KOG1318 Helix loop helix trans 99.5 8.9E-14 1.9E-18 123.8 7.3 70 34-103 218-290 (411)
4 smart00353 HLH helix loop heli 99.5 1.7E-13 3.7E-18 88.6 6.7 49 54-103 1-52 (53)
5 KOG1319 bHLHZip transcription 99.3 2E-12 4.3E-17 104.6 6.4 70 47-116 60-135 (229)
6 KOG4304 Transcriptional repres 99.0 3E-10 6.6E-15 95.9 2.7 54 50-103 33-93 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.7 1.8E-08 3.9E-13 96.4 5.5 52 50-101 21-75 (803)
8 KOG2483 Upstream transcription 98.7 6.7E-08 1.5E-12 80.9 8.2 61 46-106 56-118 (232)
9 KOG2588 Predicted DNA-binding 98.6 7.1E-08 1.5E-12 93.0 5.8 67 47-113 274-340 (953)
10 PLN03217 transcription factor 98.4 1.6E-06 3.4E-11 62.2 6.7 56 60-115 18-78 (93)
11 KOG3960 Myogenic helix-loop-he 98.1 2.1E-05 4.5E-10 66.6 9.7 56 52-107 121-177 (284)
12 KOG0561 bHLH transcription fac 98.0 4.3E-06 9.2E-11 72.4 3.3 54 51-105 62-117 (373)
13 KOG4029 Transcription factor H 97.8 2E-05 4.3E-10 65.4 4.0 60 48-107 108-170 (228)
14 KOG3582 Mlx interactors and re 97.6 4.3E-05 9.4E-10 72.2 3.5 86 48-145 650-746 (856)
15 KOG3910 Helix loop helix trans 97.0 0.00091 2E-08 61.5 5.1 60 45-104 522-584 (632)
16 KOG4447 Transcription factor T 95.2 0.011 2.3E-07 47.0 1.8 52 50-101 79-131 (173)
17 KOG3559 Transcriptional regula 92.1 0.16 3.4E-06 46.4 3.6 44 55-98 7-53 (598)
18 KOG3898 Transcription factor N 91.9 0.22 4.7E-06 42.3 4.0 50 51-101 74-126 (254)
19 KOG3558 Hypoxia-inducible fact 91.1 0.18 3.8E-06 48.4 2.9 43 55-97 52-97 (768)
20 KOG3560 Aryl-hydrocarbon recep 87.7 0.46 9.9E-06 44.8 2.9 38 58-96 34-75 (712)
21 KOG4395 Transcription factor A 87.4 1 2.2E-05 38.6 4.6 52 52-103 177-230 (285)
22 PF09849 DUF2076: Uncharacteri 83.7 12 0.00026 31.8 9.4 34 95-130 57-90 (247)
23 COG3074 Uncharacterized protei 68.2 10 0.00022 26.5 3.9 26 87-112 12-37 (79)
24 PRK15422 septal ring assembly 67.8 11 0.00024 26.7 4.1 29 87-115 12-40 (79)
25 PRK13729 conjugal transfer pil 67.4 70 0.0015 29.8 10.3 59 52-116 68-127 (475)
26 PRK00846 hypothetical protein; 65.4 45 0.00097 23.5 7.6 54 60-116 7-64 (77)
27 PF06005 DUF904: Protein of un 63.7 17 0.00037 25.1 4.3 25 88-112 13-37 (72)
28 KOG3582 Mlx interactors and re 58.7 3.6 7.9E-05 39.9 0.4 63 46-111 784-850 (856)
29 smart00338 BRLZ basic region l 58.3 13 0.00028 24.5 2.9 23 93-115 26-48 (65)
30 KOG4447 Transcription factor T 57.1 9 0.0002 30.6 2.3 45 56-100 29-74 (173)
31 PF10393 Matrilin_ccoil: Trime 56.4 23 0.0005 22.7 3.7 31 85-115 15-45 (47)
32 PF00170 bZIP_1: bZIP transcri 48.6 24 0.00051 23.2 3.0 17 57-73 17-33 (64)
33 PF09006 Surfac_D-trimer: Lung 46.9 24 0.00053 22.5 2.6 22 95-116 1-22 (46)
34 PF08826 DMPK_coil: DMPK coile 40.6 72 0.0016 21.4 4.3 52 57-114 9-60 (61)
35 PF07334 IFP_35_N: Interferon- 40.0 1.2E+02 0.0025 21.4 5.5 28 88-115 2-29 (76)
36 KOG3119 Basic region leucine z 38.1 2.5E+02 0.0055 23.9 9.8 28 89-116 218-245 (269)
37 PF02185 HR1: Hr1 repeat; Int 36.7 1.3E+02 0.0028 20.0 6.7 34 83-116 30-63 (70)
38 PF02344 Myc-LZ: Myc leucine z 36.0 45 0.00097 19.7 2.4 16 58-73 14-29 (32)
39 PHA03386 P10 fibrous body prot 35.7 81 0.0017 23.1 4.2 17 82-98 1-17 (94)
40 PF07716 bZIP_2: Basic region 35.3 53 0.0011 20.9 3.0 16 96-111 35-50 (54)
41 PF09789 DUF2353: Uncharacteri 35.2 1.6E+02 0.0034 26.1 6.8 34 83-116 69-102 (319)
42 PF14689 SPOB_a: Sensor_kinase 35.0 1.3E+02 0.0028 19.7 5.6 41 58-106 17-57 (62)
43 PF14197 Cep57_CLD_2: Centroso 34.9 88 0.0019 21.3 4.2 28 85-112 39-66 (69)
44 PF07544 Med9: RNA polymerase 34.8 1.5E+02 0.0032 20.7 5.5 50 63-115 32-81 (83)
45 PF11336 DUF3138: Protein of u 34.8 79 0.0017 29.4 5.0 29 92-120 24-52 (514)
46 PF13334 DUF4094: Domain of un 34.5 1.1E+02 0.0023 22.2 4.8 27 87-113 67-93 (95)
47 PF13870 DUF4201: Domain of un 32.0 2.5E+02 0.0054 21.9 7.4 57 56-116 116-175 (177)
48 PF10465 Inhibitor_I24: PinA p 31.8 38 0.00083 26.1 2.1 20 83-102 120-139 (140)
49 KOG0139 Short-chain acyl-CoA d 29.3 74 0.0016 28.8 3.8 28 87-114 288-328 (398)
50 COG4710 Predicted DNA-binding 29.1 1.5E+02 0.0034 20.8 4.6 31 64-99 16-47 (80)
51 PRK14127 cell division protein 28.8 1E+02 0.0022 23.1 3.9 31 86-116 30-60 (109)
52 PF14916 CCDC92: Coiled-coil d 28.3 1E+02 0.0022 20.7 3.5 30 85-114 5-35 (60)
53 PF13815 Dzip-like_N: Iguana/D 27.9 1.2E+02 0.0026 22.4 4.3 27 86-112 62-92 (118)
54 PF02996 Prefoldin: Prefoldin 27.1 1.1E+02 0.0023 22.0 3.8 29 88-116 75-107 (120)
55 PF14992 TMCO5: TMCO5 family 26.4 1.2E+02 0.0025 26.5 4.4 27 85-111 143-169 (280)
56 PRK04406 hypothetical protein; 26.1 2.3E+02 0.0049 19.6 7.5 41 63-113 8-52 (75)
57 PF03195 DUF260: Protein of un 25.5 1.2E+02 0.0025 22.3 3.7 64 51-115 19-100 (101)
58 PF05308 Mito_fiss_reg: Mitoch 24.7 1.1E+02 0.0024 26.0 4.0 28 85-112 114-141 (253)
59 PLN03106 TCP2 Protein TCP2; Pr 24.1 1.9E+02 0.0041 26.4 5.4 31 45-75 70-109 (447)
60 TIGR00986 3a0801s05tom22 mitoc 23.9 63 0.0014 25.5 2.1 17 62-78 49-65 (145)
61 COG5466 Predicted small metal- 23.2 83 0.0018 21.1 2.3 32 72-103 9-43 (59)
62 PF01166 TSC22: TSC-22/dip/bun 23.2 2.4E+02 0.0052 18.9 4.9 30 85-117 16-45 (59)
63 KOG3584 cAMP response element 22.8 60 0.0013 28.7 2.0 18 92-109 311-328 (348)
64 PF06305 DUF1049: Protein of u 22.7 89 0.0019 20.2 2.5 16 96-111 51-66 (68)
65 KOG3540 Beta amyloid precursor 22.4 3.6E+02 0.0079 25.6 7.0 54 56-109 258-312 (615)
66 PF03791 KNOX2: KNOX2 domain ; 22.3 1.2E+02 0.0027 19.7 3.0 19 87-105 32-50 (52)
67 PRK02793 phi X174 lysis protei 22.1 2.7E+02 0.0058 19.0 5.8 17 96-112 39-55 (72)
68 PF13713 BRX_N: Transcription 21.6 1.2E+02 0.0026 18.6 2.7 21 89-109 8-28 (39)
69 PF15392 Joubert: Joubert synd 21.0 2.9E+02 0.0063 24.6 5.8 27 49-75 56-82 (329)
70 PF04508 Pox_A_type_inc: Viral 21.0 1.6E+02 0.0035 16.1 2.8 16 95-110 3-18 (23)
71 PF05103 DivIVA: DivIVA protei 20.8 1.2E+02 0.0027 22.0 3.2 32 86-117 25-56 (131)
72 PF05597 Phasin: Poly(hydroxya 20.6 2.6E+02 0.0057 21.4 5.0 18 55-72 50-67 (132)
73 PF13805 Pil1: Eisosome compon 20.3 3E+02 0.0064 23.9 5.7 31 57-91 143-173 (271)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.54 E-value=1.1e-14 Score=96.08 Aligned_cols=55 Identities=36% Similarity=0.639 Sum_probs=49.3
Q ss_pred cCccccHHHHHHHHHHHHHHHHHhhcCCCC--CcCcchhhhHHHHHHHHHHHHHHHH
Q 030782 49 ATDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVE 103 (171)
Q Consensus 49 ~~~~h~~~ER~RR~~In~~~~~L~~lvP~~--~k~~~KasiL~~aI~YIk~Lq~~v~ 103 (171)
.+..|+..||+||++||++|..|+.+||.. ...++|++||+.||+||++|+.+++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 456799999999999999999999999998 2445999999999999999998763
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.51 E-value=1.5e-14 Score=94.78 Aligned_cols=50 Identities=36% Similarity=0.723 Sum_probs=45.2
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC----CcCcchhhhHHHHHHHHHHHH
Q 030782 50 TDSHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 99 (171)
Q Consensus 50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~----~k~~~KasiL~~aI~YIk~Lq 99 (171)
+..|+..||+||++||.+|..|+.+||.+ ...++|++||+.||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 35799999999999999999999999987 233699999999999999997
No 3
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.47 E-value=8.9e-14 Score=123.75 Aligned_cols=70 Identities=34% Similarity=0.566 Sum_probs=60.1
Q ss_pred CCCcccccccccCCCcCccccHHHHHHHHHHHHHHHHHhhcCCCCCc---CcchhhhHHHHHHHHHHHHHHHH
Q 030782 34 EPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQVE 103 (171)
Q Consensus 34 ~~p~~~~~~r~~r~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k---~~~KasiL~~aI~YIk~Lq~~v~ 103 (171)
+.++.......|.+++++.||.+||+||++||++|.+|..|||.|+. .++|..||..+++||+.||+..+
T Consensus 218 t~~~~~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 218 THPKTDATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred CCCCcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 33456666667778888999999999999999999999999999943 26899999999999999987666
No 4
>smart00353 HLH helix loop helix domain.
Probab=99.47 E-value=1.7e-13 Score=88.62 Aligned_cols=49 Identities=41% Similarity=0.611 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCC---CcCcchhhhHHHHHHHHHHHHHHHH
Q 030782 54 SLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVE 103 (171)
Q Consensus 54 ~~~ER~RR~~In~~~~~L~~lvP~~---~k~~~KasiL~~aI~YIk~Lq~~v~ 103 (171)
+..||+||++||++|..|+.+||.+ .+ ++|++||+.||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k-~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKK-LSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999964 34 4999999999999999999875
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.34 E-value=2e-12 Score=104.57 Aligned_cols=70 Identities=29% Similarity=0.510 Sum_probs=59.2
Q ss_pred CCcCccccHHHHHHHHHHHHHHHHHhhcCCCCCcC------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030782 47 GQATDSHSLAERARREKISERMKILQDLVPGCNKV------IGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 47 ~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k~------~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~~ 116 (171)
.+++..|.-+||+||+-||.++..|+.|||.|... ++||.||+++|+||.+|+.+...-+.++.+|+..+
T Consensus 60 ~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~v 135 (229)
T KOG1319|consen 60 DRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDV 135 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999977322 48999999999999999998887777777666553
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.96 E-value=3e-10 Score=95.91 Aligned_cols=54 Identities=31% Similarity=0.474 Sum_probs=46.3
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCCCc-------CcchhhhHHHHHHHHHHHHHHHH
Q 030782 50 TDSHSLAERARREKISERMKILQDLVPGCNK-------VIGKALVLDEIINYIQSLQRQVE 103 (171)
Q Consensus 50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k-------~~~KasiL~~aI~YIk~Lq~~v~ 103 (171)
+..|.++|||||++||+++.+|+.||+.+-+ +++||.||+.||+|+++|+....
T Consensus 33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 3467899999999999999999999996522 26999999999999999987543
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.70 E-value=1.8e-08 Score=96.38 Aligned_cols=52 Identities=21% Similarity=0.382 Sum_probs=48.0
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCCC---cCcchhhhHHHHHHHHHHHHHH
Q 030782 50 TDSHSLAERARREKISERMKILQDLVPGCN---KVIGKALVLDEIINYIQSLQRQ 101 (171)
Q Consensus 50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~~---k~~~KasiL~~aI~YIk~Lq~~ 101 (171)
+++|+.+||+||+++|..|.+|.+|||.|. -++||-+||.+||.+|+.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 668999999999999999999999999986 4469999999999999999885
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.69 E-value=6.7e-08 Score=80.91 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=49.6
Q ss_pred CCCcCccccHHHHHHHHHHHHHHHHHhhcCCCCCcCc--chhhhHHHHHHHHHHHHHHHHHHH
Q 030782 46 RGQATDSHSLAERARREKISERMKILQDLVPGCNKVI--GKALVLDEIINYIQSLQRQVEFLS 106 (171)
Q Consensus 46 r~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k~~--~KasiL~~aI~YIk~Lq~~v~~L~ 106 (171)
...++..||..||+||+.|+++|..|+.+||...... ..++||++|++||+.|+.......
T Consensus 56 ~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~ 118 (232)
T KOG2483|consen 56 AASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQ 118 (232)
T ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHH
Confidence 3456678999999999999999999999999763321 258999999999999987665333
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.58 E-value=7.1e-08 Score=92.96 Aligned_cols=67 Identities=30% Similarity=0.534 Sum_probs=57.6
Q ss_pred CCcCccccHHHHHHHHHHHHHHHHHhhcCCCCCcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030782 47 GQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN 113 (171)
Q Consensus 47 ~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~ 113 (171)
+..+.+||++|++.|..||++|.+|+.+||+..-++.|..+|..||+||++|+...+.|....+.+.
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 3568899999999999999999999999998854459999999999999999998887766554443
No 10
>PLN03217 transcription factor ATBS1; Provisional
Probab=98.36 E-value=1.6e-06 Score=62.18 Aligned_cols=56 Identities=30% Similarity=0.483 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCc-----CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030782 60 RREKISERMKILQDLVPGCNK-----VIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR 115 (171)
Q Consensus 60 RR~~In~~~~~L~~lvP~~~k-----~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~ 115 (171)
--+.|++.+..|+.|+|.... ..+-+-||++|+.||+.|+.+|..|.+.+.+|-..
T Consensus 18 sddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 18 SEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred CHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 358999999999999996421 23677899999999999999999999988777544
No 11
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.13 E-value=2.1e-05 Score=66.56 Aligned_cols=56 Identities=25% Similarity=0.354 Sum_probs=49.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhh-cCCCCCcCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 030782 52 SHSLAERARREKISERMKILQD-LVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 107 (171)
Q Consensus 52 ~h~~~ER~RR~~In~~~~~L~~-lvP~~~k~~~KasiL~~aI~YIk~Lq~~v~~L~~ 107 (171)
+-.+.||+|=.|+|+.|.+|+. -+++.+..+-|..||..||+||..||.-++++..
T Consensus 121 AATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~ 177 (284)
T KOG3960|consen 121 AATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQ 177 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567899999999999999954 6777787789999999999999999999988765
No 12
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.00 E-value=4.3e-06 Score=72.39 Aligned_cols=54 Identities=28% Similarity=0.431 Sum_probs=46.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC--CcCcchhhhHHHHHHHHHHHHHHHHHH
Q 030782 51 DSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEFL 105 (171)
Q Consensus 51 ~~h~~~ER~RR~~In~~~~~L~~lvP~~--~k~~~KasiL~~aI~YIk~Lq~~v~~L 105 (171)
+--|..||+|=.-||-+|..||.|+|-- .|. +||.||+.+.+||.+|+.+.-+|
T Consensus 62 eIANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 62 EIANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HhhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhccccc
Confidence 3467789999999999999999999964 554 99999999999999998755443
No 13
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.81 E-value=2e-05 Score=65.41 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=51.0
Q ss_pred CcCccccHHHHHHHHHHHHHHHHHhhcCCCC---CcCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 030782 48 QATDSHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVEFLSM 107 (171)
Q Consensus 48 ~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~---~k~~~KasiL~~aI~YIk~Lq~~v~~L~~ 107 (171)
..+..+|..||.|=..+|..|..||.+||.. .|+++|..+|..||.||++|+.-++.-..
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 3445678889999999999999999999953 45579999999999999999988876553
No 14
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=97.62 E-value=4.3e-05 Score=72.22 Aligned_cols=86 Identities=21% Similarity=0.254 Sum_probs=66.3
Q ss_pred CcCccccHHHHHHHHHHHHHHHHHhhcCCCCCcC----cchhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHhccc
Q 030782 48 QATDSHSLAERARREKISERMKILQDLVPGCNKV----IGKALVLDEIINYIQSLQRQV-------EFLSMKLEAVNSRM 116 (171)
Q Consensus 48 ~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k~----~~KasiL~~aI~YIk~Lq~~v-------~~L~~~~e~~~~~~ 116 (171)
.....|+.+|.+||++|+-+|..|.+++.+.... +.++.-|+++++||..++.+. ..|..+.+.++.-+
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~s~~~A~~ 729 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEISELNAVI 729 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhhHHHHHHH
Confidence 4567899999999999999999999999876443 467777999999996665544 45555666666655
Q ss_pred cCCCCccCCCCCCCCcCCCCCCCccccCC
Q 030782 117 NLTPTIEGFHPKDLGEQAFDATGMIFGSQ 145 (171)
Q Consensus 117 ~~~p~~~~~~~~~~~~~~~~~~g~~~~~~ 145 (171)
+ .|+++.+++|++....
T Consensus 730 ~------------~~~q~p~aT~vp~~r~ 746 (856)
T KOG3582|consen 730 S------------ACQQPPPATGVPGTRL 746 (856)
T ss_pred H------------HhhcCCCccCCcchhh
Confidence 4 5788888888887765
No 15
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=97.04 E-value=0.00091 Score=61.48 Aligned_cols=60 Identities=27% Similarity=0.266 Sum_probs=49.1
Q ss_pred cCCCcCccccHHHHHHHHHHHHHHHHHhhcCCC---CCcCcchhhhHHHHHHHHHHHHHHHHH
Q 030782 45 RRGQATDSHSLAERARREKISERMKILQDLVPG---CNKVIGKALVLDEIINYIQSLQRQVEF 104 (171)
Q Consensus 45 ~r~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~---~~k~~~KasiL~~aI~YIk~Lq~~v~~ 104 (171)
|.+.++...|..||-|-..||+.|++|..|.-- ..|.-.|.-||-.||.-|-.|++||++
T Consensus 522 REkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 522 REKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 334556778999999999999999999988742 222237899999999999999999984
No 16
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=95.22 E-value=0.011 Score=46.97 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=44.7
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC-CcCcchhhhHHHHHHHHHHHHHH
Q 030782 50 TDSHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQ 101 (171)
Q Consensus 50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~-~k~~~KasiL~~aI~YIk~Lq~~ 101 (171)
+.-|++-||+|=..+|+.|..||.+||.. ....+|.-.|+-|..||-+|=+-
T Consensus 79 rv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~v 131 (173)
T KOG4447|consen 79 RVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 131 (173)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhc
Confidence 35699999999999999999999999975 33349999999999999988543
No 17
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=92.11 E-value=0.16 Score=46.36 Aligned_cols=44 Identities=27% Similarity=0.334 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC---CcCcchhhhHHHHHHHHHHH
Q 030782 55 LAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSL 98 (171)
Q Consensus 55 ~~ER~RR~~In~~~~~L~~lvP~~---~k~~~KasiL~~aI~YIk~L 98 (171)
.+.|.||++-|..|.+|..++|-. +..+||++|+.-|..|||.-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 568999999999999999999943 33369999999999999853
No 18
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=91.88 E-value=0.22 Score=42.35 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=41.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC---CcCcchhhhHHHHHHHHHHHHHH
Q 030782 51 DSHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQ 101 (171)
Q Consensus 51 ~~h~~~ER~RR~~In~~~~~L~~lvP~~---~k~~~KasiL~~aI~YIk~Lq~~ 101 (171)
..-|.-||+|=-.+|+.|..||.+||.. .+ +.|+.+|.-|-+||..|++-
T Consensus 74 ~kaNaRER~RMH~LNdAld~LReviP~~~~~~k-lskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 74 LKANARERTRMHDLNDALDALREVIPHGLHPPK-LSKIETLRLAANYIAALSEV 126 (254)
T ss_pred ccccchhhccccchhHHHHHhHhhccCcCCCCC-CCcchhHHhhhcchhhhccc
Confidence 3456679999999999999999999943 34 49999999999999988754
No 19
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=91.08 E-value=0.18 Score=48.43 Aligned_cols=43 Identities=30% Similarity=0.379 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC---CcCcchhhhHHHHHHHHHH
Q 030782 55 LAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQS 97 (171)
Q Consensus 55 ~~ER~RR~~In~~~~~L~~lvP~~---~k~~~KasiL~~aI~YIk~ 97 (171)
-+.|.||-|-|+-|-+|..+||-. ...+|||+|+.-||-|++-
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 578999999999999999999832 2336999999999999963
No 20
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=87.68 E-value=0.46 Score=44.77 Aligned_cols=38 Identities=24% Similarity=0.456 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCC----CcCcchhhhHHHHHHHHH
Q 030782 58 RARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQ 96 (171)
Q Consensus 58 R~RR~~In~~~~~L~~lvP~~----~k~~~KasiL~~aI~YIk 96 (171)
++-|+++|..++.|.+|+|-. +|. ||.+||.-+|-|++
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKL-DkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKL-DKLSVLRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhh-hhhhhhhhhHHHHH
Confidence 455899999999999999953 665 99999999999984
No 21
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=87.43 E-value=1 Score=38.63 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=43.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCC--CcCcchhhhHHHHHHHHHHHHHHHH
Q 030782 52 SHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVE 103 (171)
Q Consensus 52 ~h~~~ER~RR~~In~~~~~L~~lvP~~--~k~~~KasiL~~aI~YIk~Lq~~v~ 103 (171)
+-+..||+|=..+|..|+.|+..||.. .+.++|-..|+.|-.||--|-..+.
T Consensus 177 aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 177 AANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred ccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 567889999999999999999999965 2335899999999999987765543
No 22
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=83.65 E-value=12 Score=31.81 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCccCCCCCCC
Q 030782 95 IQSLQRQVEFLSMKLEAVNSRMNLTPTIEGFHPKDL 130 (171)
Q Consensus 95 Ik~Lq~~v~~L~~~~e~~~~~~~~~p~~~~~~~~~~ 130 (171)
||.|+.+|++|+.++.+....-. +....|....+
T Consensus 57 L~~a~~ri~eLe~ql~q~~~~~~--~~~ggFL~~lf 90 (247)
T PF09849_consen 57 LKQAQARIQELEAQLQQAQAPQA--QSSGGFLSGLF 90 (247)
T ss_pred HHHHHHHHHHHHHHHHhhccccC--CCCCcchhhhc
Confidence 68889999999988876433221 23445544433
No 23
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.21 E-value=10 Score=26.51 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030782 87 VLDEIINYIQSLQRQVEFLSMKLEAV 112 (171)
Q Consensus 87 iL~~aI~YIk~Lq~~v~~L~~~~e~~ 112 (171)
-++.||+-|.-||.++++|+++...+
T Consensus 12 KiqqAvdTI~LLQmEieELKEknn~l 37 (79)
T COG3074 12 KVQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 36778888888888888888766544
No 24
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=67.78 E-value=11 Score=26.71 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030782 87 VLDEIINYIQSLQRQVEFLSMKLEAVNSR 115 (171)
Q Consensus 87 iL~~aI~YIk~Lq~~v~~L~~~~e~~~~~ 115 (171)
-++.|||-|.-||.++++|+++...+...
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999877666553
No 25
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=67.37 E-value=70 Score=29.84 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=38.2
Q ss_pred cccHHHHH-HHHHHHHHHHHHhhcCCCCCcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030782 52 SHSLAERA-RREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 52 ~h~~~ER~-RR~~In~~~~~L~~lvP~~~k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~~ 116 (171)
.+.+.|.. +...+...|..|+.=+--. ...+++.-.-|+.|+.+++.|+.+++.+....
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~------saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~ 127 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVL------NKQRGDDQRRIEKLGQDNAALAEQVKALGANP 127 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 34566666 6788888888886311100 14455566677788888888888876655543
No 26
>PRK00846 hypothetical protein; Provisional
Probab=65.44 E-value=45 Score=23.46 Aligned_cols=54 Identities=17% Similarity=0.101 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCcCcchhhhHHHHH----HHHHHHHHHHHHHHHHHHHHhccc
Q 030782 60 RREKISERMKILQDLVPGCNKVIGKALVLDEII----NYIQSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 60 RR~~In~~~~~L~~lvP~~~k~~~KasiL~~aI----~YIk~Lq~~v~~L~~~~e~~~~~~ 116 (171)
|-..+..+|..|..-|---. +...-|.++| .-|..|+.+++.|..++..+.+..
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe---~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 7 RDQALEARLVELETRLSFQE---QALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55677788888876442111 1122222222 223555666666666666555443
No 27
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=63.67 E-value=17 Score=25.14 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030782 88 LDEIINYIQSLQRQVEFLSMKLEAV 112 (171)
Q Consensus 88 L~~aI~YIk~Lq~~v~~L~~~~e~~ 112 (171)
++.||+-|.-|+.+++.|+.+...+
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5788999999999999988865444
No 28
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=58.70 E-value=3.6 Score=39.91 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=51.1
Q ss_pred CCCcCccccHHHHHHHHHHHHHHHHHhhcCCCC----CcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030782 46 RGQATDSHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEA 111 (171)
Q Consensus 46 r~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~----~k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~ 111 (171)
...-...|+-++|++|-.+.++|..|-.|.|.. .+..++++||. +.|+.+++.-+.+.++.+.
T Consensus 784 n~~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~ 850 (856)
T KOG3582|consen 784 NGMVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEG 850 (856)
T ss_pred cceeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhh
Confidence 334455688899999999999999999999853 44468999999 9999999998888775543
No 29
>smart00338 BRLZ basic region leucin zipper.
Probab=58.35 E-value=13 Score=24.52 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 030782 93 NYIQSLQRQVEFLSMKLEAVNSR 115 (171)
Q Consensus 93 ~YIk~Lq~~v~~L~~~~e~~~~~ 115 (171)
.||..|+.+++.|+.++..|...
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~ 48 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKE 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544443
No 30
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=57.13 E-value=9 Score=30.64 Aligned_cols=45 Identities=29% Similarity=0.346 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCc-CcchhhhHHHHHHHHHHHHH
Q 030782 56 AERARREKISERMKILQDLVPGCNK-VIGKALVLDEIINYIQSLQR 100 (171)
Q Consensus 56 ~ER~RR~~In~~~~~L~~lvP~~~k-~~~KasiL~~aI~YIk~Lq~ 100 (171)
.||-|..++++.+.-|+.|+|+... .+.+--.|.-+.+||.+|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 5888889999999999999998621 11334446667677766544
No 31
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=56.41 E-value=23 Score=22.66 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030782 85 ALVLDEIINYIQSLQRQVEFLSMKLEAVNSR 115 (171)
Q Consensus 85 asiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~ 115 (171)
...-..+-.+|+.|...+..+..+++.++.+
T Consensus 15 v~FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 15 VAFQNKVTSALQSLTQKLDAVSKRLEALENR 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556788899999999999999999988754
No 32
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=48.59 E-value=24 Score=23.19 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 030782 57 ERARREKISERMKILQD 73 (171)
Q Consensus 57 ER~RR~~In~~~~~L~~ 73 (171)
-|+-|.+-...+..|..
T Consensus 17 Ar~~R~RKk~~~~~Le~ 33 (64)
T PF00170_consen 17 ARRSRQRKKQYIEELEE 33 (64)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHH
Confidence 33334444444444443
No 33
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=46.89 E-value=24 Score=22.52 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 030782 95 IQSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 95 Ik~Lq~~v~~L~~~~e~~~~~~ 116 (171)
|..|++||..|+.++..|...+
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~f 22 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAF 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888887776654
No 34
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=40.56 E-value=72 Score=21.40 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030782 57 ERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNS 114 (171)
Q Consensus 57 ER~RR~~In~~~~~L~~lvP~~~k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~ 114 (171)
|-+-+..|.+.+...++-- ..-..-|+++=...+.|..++..|+.+++.+.+
T Consensus 9 EirakQ~~~eEL~kvk~~n------~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 9 EIRAKQAIQEELTKVKSAN------LAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555666555544311 134567999999999999999999999887754
No 35
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=40.01 E-value=1.2e+02 Score=21.42 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030782 88 LDEIINYIQSLQRQVEFLSMKLEAVNSR 115 (171)
Q Consensus 88 L~~aI~YIk~Lq~~v~~L~~~~e~~~~~ 115 (171)
|++-.+.-..|+.+++.|+++++.+...
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566677788888888888888776654
No 36
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=38.13 E-value=2.5e+02 Score=23.87 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030782 89 DEIINYIQSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 89 ~~aI~YIk~Lq~~v~~L~~~~e~~~~~~ 116 (171)
++.-.-|.+|..+++.|..++++|...+
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el 245 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKEL 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566777777777777666665554
No 37
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=36.66 E-value=1.3e+02 Score=20.00 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=25.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030782 83 GKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 83 ~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~~ 116 (171)
++..++..+-.-|......++.|+.+++.++...
T Consensus 30 ~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 30 DKKKVLSEAESQLRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp HHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5555788888888888888888888888777654
No 38
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=36.00 E-value=45 Score=19.67 Aligned_cols=16 Identities=31% Similarity=0.717 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 030782 58 RARREKISERMKILQD 73 (171)
Q Consensus 58 R~RR~~In~~~~~L~~ 73 (171)
|+||+.++.++..|++
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7889999999998875
No 39
>PHA03386 P10 fibrous body protein; Provisional
Probab=35.67 E-value=81 Score=23.09 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=9.2
Q ss_pred cchhhhHHHHHHHHHHH
Q 030782 82 IGKALVLDEIINYIQSL 98 (171)
Q Consensus 82 ~~KasiL~~aI~YIk~L 98 (171)
|+|.+||-....-|+.+
T Consensus 1 MSKpnILl~Ir~dIkav 17 (94)
T PHA03386 1 MSKPSVLTQILDAVQEV 17 (94)
T ss_pred CCcchHHHHHHHHHHHH
Confidence 35555655555555553
No 40
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=35.25 E-value=53 Score=20.86 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 030782 96 QSLQRQVEFLSMKLEA 111 (171)
Q Consensus 96 k~Lq~~v~~L~~~~e~ 111 (171)
..|+.++..|..++..
T Consensus 35 ~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 35 QELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 41
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=35.20 E-value=1.6e+02 Score=26.09 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=29.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030782 83 GKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 83 ~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~~ 116 (171)
+=+.+|.++-+-.+.|+.++..|..++..+...+
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~ 102 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQGDI 102 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 5578899999999999999999999887776553
No 42
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.03 E-value=1.3e+02 Score=19.67 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcCcchhhhHHHHHHHHHHHHHHHHHHH
Q 030782 58 RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLS 106 (171)
Q Consensus 58 R~RR~~In~~~~~L~~lvP~~~k~~~KasiL~~aI~YIk~Lq~~v~~L~ 106 (171)
|.-|-.+...+.++..++--. =.++|.+||+.+-..++.+.
T Consensus 17 R~~RHD~~NhLqvI~gllqlg--------~~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQLG--------KYEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHH
Confidence 666777888888888887422 24688999999998888773
No 43
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=34.94 E-value=88 Score=21.33 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030782 85 ALVLDEIINYIQSLQRQVEFLSMKLEAV 112 (171)
Q Consensus 85 asiL~~aI~YIk~Lq~~v~~L~~~~e~~ 112 (171)
+.=|+.|+.-+..|+.+++.|..+++..
T Consensus 39 ~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 39 ERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4558889999999999999999887654
No 44
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.84 E-value=1.5e+02 Score=20.66 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhcCCCCCcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030782 63 KISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR 115 (171)
Q Consensus 63 ~In~~~~~L~~lvP~~~k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~ 115 (171)
.|+.+|...+++|-..... .--+++--++|+.|+++++....-+..+...
T Consensus 32 ~lk~Klq~ar~~i~~lpgi---~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 32 SLKHKLQKARAAIRELPGI---DRSVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHhCCCc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555554322222 2235666778889998888877766655443
No 45
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=34.76 E-value=79 Score=29.43 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 030782 92 INYIQSLQRQVEFLSMKLEAVNSRMNLTP 120 (171)
Q Consensus 92 I~YIk~Lq~~v~~L~~~~e~~~~~~~~~p 120 (171)
-+-|+.|+.|++.|+.++.+|+..+...|
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa~~ 52 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAAKP 52 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45677888888888888877777765333
No 46
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=34.51 E-value=1.1e+02 Score=22.25 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030782 87 VLDEIINYIQSLQRQVEFLSMKLEAVN 113 (171)
Q Consensus 87 iL~~aI~YIk~Lq~~v~~L~~~~e~~~ 113 (171)
=+.+|-+=|+.|.+.+..|++++....
T Consensus 67 eV~kTh~aIq~LdKtIS~LEMELAaAR 93 (95)
T PF13334_consen 67 EVSKTHEAIQSLDKTISSLEMELAAAR 93 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357777778999999999999987654
No 47
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=31.96 E-value=2.5e+02 Score=21.93 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcCcchhhh---HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030782 56 AERARREKISERMKILQDLVPGCNKVIGKALV---LDEIINYIQSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 56 ~ER~RR~~In~~~~~L~~lvP~~~k~~~Kasi---L~~aI~YIk~Lq~~v~~L~~~~e~~~~~~ 116 (171)
..+..|+++......|+.-.... ....+ .+.+++++..|+..|..|+.+++.+...+
T Consensus 116 ~~k~~r~k~~~~~~~l~~~~~~~----~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 116 RVKKERDKLRKQNKKLRQQGGLL----GVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666777667776533322 22223 57899999999999999999888776654
No 48
>PF10465 Inhibitor_I24: PinA peptidase inhibitor ; InterPro: IPR019506 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. PinA inhibits the endopeptidase La. It binds to the La homotetramer but does not interfere with the ATP binding site or the active site of La.
Probab=31.84 E-value=38 Score=26.12 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.0
Q ss_pred chhhhHHHHHHHHHHHHHHH
Q 030782 83 GKALVLDEIINYIQSLQRQV 102 (171)
Q Consensus 83 ~KasiL~~aI~YIk~Lq~~v 102 (171)
--..+.+.|.+||.+|+.|+
T Consensus 120 yEgnLMQAAAeYIewLE~ql 139 (140)
T PF10465_consen 120 YEGNLMQAAAEYIEWLETQL 139 (140)
T ss_pred chhhHHHHHHHHHHHHHhhc
Confidence 34678999999999999875
No 49
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=29.29 E-value=74 Score=28.83 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=22.8
Q ss_pred hHHHHHHHHH-------------HHHHHHHHHHHHHHHHhc
Q 030782 87 VLDEIINYIQ-------------SLQRQVEFLSMKLEAVNS 114 (171)
Q Consensus 87 iL~~aI~YIk-------------~Lq~~v~~L~~~~e~~~~ 114 (171)
-++.||+|++ .||.|+..++.++|....
T Consensus 288 c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRl 328 (398)
T KOG0139|consen 288 CFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARL 328 (398)
T ss_pred HHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4789999985 499999999998887654
No 50
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=29.07 E-value=1.5e+02 Score=20.81 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=20.2
Q ss_pred HHHHHHHHhhcCCCCCcCcchhhhHHHHHH-HHHHHH
Q 030782 64 ISERMKILQDLVPGCNKVIGKALVLDEIIN-YIQSLQ 99 (171)
Q Consensus 64 In~~~~~L~~lvP~~~k~~~KasiL~~aI~-YIk~Lq 99 (171)
+.+++..|.+- . .. .||.+|.+||+ ||..++
T Consensus 16 ~~eRL~~Ls~~---t-gr-tkayyvrEaIE~~ieemE 47 (80)
T COG4710 16 LKERLDNLSKN---T-GR-TKAYYVREAIEAYIEEME 47 (80)
T ss_pred HHHHHHHHHHh---c-CC-chhHHHHHHHHHHHHHHH
Confidence 45556666542 2 23 68999999997 566554
No 51
>PRK14127 cell division protein GpsB; Provisional
Probab=28.81 E-value=1e+02 Score=23.07 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030782 86 LVLDEIINYIQSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 86 siL~~aI~YIk~Lq~~v~~L~~~~e~~~~~~ 116 (171)
..|+..|+-+..|..++..|+.++..++..+
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l 60 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQV 60 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777665555555555555444444433
No 52
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=28.27 E-value=1e+02 Score=20.68 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHHHHHhc
Q 030782 85 ALVLDEIINYIQSLQRQ-VEFLSMKLEAVNS 114 (171)
Q Consensus 85 asiL~~aI~YIk~Lq~~-v~~L~~~~e~~~~ 114 (171)
..-|+..|.|+++=+.. +..|..+++.|..
T Consensus 5 v~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~ 35 (60)
T PF14916_consen 5 VQSLEKSILFLQQEHAQTLKGLHAEIERLQK 35 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466777776443322 3344444444433
No 53
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.94 E-value=1.2e+02 Score=22.35 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=16.9
Q ss_pred hhHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 030782 86 LVLDEIINYIQ----SLQRQVEFLSMKLEAV 112 (171)
Q Consensus 86 siL~~aI~YIk----~Lq~~v~~L~~~~e~~ 112 (171)
-+++-+|+|+- +|...+..|+.++..+
T Consensus 62 rLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~ 92 (118)
T PF13815_consen 62 RLAQLSIEYLLHCQEYLSSQLEQLEERLQEL 92 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999984 3444555555544443
No 54
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=27.12 E-value=1.1e+02 Score=22.05 Aligned_cols=29 Identities=28% Similarity=0.581 Sum_probs=20.4
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHhccc
Q 030782 88 LDEIINYI----QSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 88 L~~aI~YI----k~Lq~~v~~L~~~~e~~~~~~ 116 (171)
+++|++|+ +.|+.+.+.|...+..++..+
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~ 107 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQI 107 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888887 567777777777666665554
No 55
>PF14992 TMCO5: TMCO5 family
Probab=26.36 E-value=1.2e+02 Score=26.46 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030782 85 ALVLDEIINYIQSLQRQVEFLSMKLEA 111 (171)
Q Consensus 85 asiL~~aI~YIk~Lq~~v~~L~~~~e~ 111 (171)
+.+...++.||+.|++.++.++.+++.
T Consensus 143 ~~l~eDq~~~i~klkE~L~rmE~ekE~ 169 (280)
T PF14992_consen 143 HQLCEDQANEIKKLKEKLRRMEEEKEM 169 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999988886654
No 56
>PRK04406 hypothetical protein; Provisional
Probab=26.11 E-value=2.3e+02 Score=19.58 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhcCCCCCcCcchhhhHHHHHHHH----HHHHHHHHHHHHHHHHHh
Q 030782 63 KISERMKILQDLVPGCNKVIGKALVLDEIINYI----QSLQRQVEFLSMKLEAVN 113 (171)
Q Consensus 63 ~In~~~~~L~~lvP~~~k~~~KasiL~~aI~YI----k~Lq~~v~~L~~~~e~~~ 113 (171)
.+..+|..|.. |.+.++.+|+-+ -..|.++..|..++..+.
T Consensus 8 ~le~Ri~~LE~----------~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~ 52 (75)
T PRK04406 8 QLEERINDLEC----------QLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV 52 (75)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777764 445555555544 223444444444444443
No 57
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=25.52 E-value=1.2e+02 Score=22.27 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=40.0
Q ss_pred ccccHHHHHHHH-------HHHHHHHHHhhcCCCCCcCcchhhhHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Q 030782 51 DSHSLAERARRE-------KISERMKILQDLVPGCNKVIGKALVLDE-----------IINYIQSLQRQVEFLSMKLEAV 112 (171)
Q Consensus 51 ~~h~~~ER~RR~-------~In~~~~~L~~lvP~~~k~~~KasiL~~-----------aI~YIk~Lq~~v~~L~~~~e~~ 112 (171)
..+..+++..+. ...+-++.|+.+-|..... --.+|+.+ .+..|..|+.++..+++++..+
T Consensus 19 aPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~-a~~Sl~yEA~~R~~dPv~Gc~G~i~~L~~ql~~~~~el~~~ 97 (101)
T PF03195_consen 19 APYFPADQPQRFANVHKVFGVSNISKMLQELPPEQRED-AMRSLVYEANARARDPVYGCVGIISQLQQQLQQLQAELALV 97 (101)
T ss_pred CCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhh-HHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 345556665543 2344456677775544222 12344444 4678899999999999998877
Q ss_pred hcc
Q 030782 113 NSR 115 (171)
Q Consensus 113 ~~~ 115 (171)
..+
T Consensus 98 ~~~ 100 (101)
T PF03195_consen 98 RAQ 100 (101)
T ss_pred Hcc
Confidence 654
No 58
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=24.71 E-value=1.1e+02 Score=26.02 Aligned_cols=28 Identities=11% Similarity=0.218 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030782 85 ALVLDEIINYIQSLQRQVEFLSMKLEAV 112 (171)
Q Consensus 85 asiL~~aI~YIk~Lq~~v~~L~~~~e~~ 112 (171)
...=+.|++-|-.||.++..|++++..+
T Consensus 114 ~~~~~~AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 114 LPANEAALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445779999999999999999998775
No 59
>PLN03106 TCP2 Protein TCP2; Provisional
Probab=24.12 E-value=1.9e+02 Score=26.41 Aligned_cols=31 Identities=32% Similarity=0.388 Sum_probs=21.8
Q ss_pred cCCCcCccccHHH-----HHHHHHH----HHHHHHHhhcC
Q 030782 45 RRGQATDSHSLAE-----RARREKI----SERMKILQDLV 75 (171)
Q Consensus 45 ~r~~~~~~h~~~E-----R~RR~~I----n~~~~~L~~lv 75 (171)
|....++.|+-+. |.||.++ -.+|-.|++++
T Consensus 70 Rasg~KDRHSKI~Ta~G~RDRRvRLS~~~ArkFFdLQD~L 109 (447)
T PLN03106 70 RASGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRL 109 (447)
T ss_pred cccCCCCcccceecccCCcccceeccHHHHHHHHhHHHHh
Confidence 4455667777764 7777554 46888999988
No 60
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=23.88 E-value=63 Score=25.48 Aligned_cols=17 Identities=35% Similarity=0.688 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhcCCCC
Q 030782 62 EKISERMKILQDLVPGC 78 (171)
Q Consensus 62 ~~In~~~~~L~~lvP~~ 78 (171)
+-|-+||-.|+.|||..
T Consensus 49 ETl~ERi~ALkDm~Pp~ 65 (145)
T TIGR00986 49 ETFTDRIYALKDIVPPT 65 (145)
T ss_pred CcHHHHHHHHHhhCCHH
Confidence 34667799999999965
No 61
>COG5466 Predicted small metal-binding protein [Function unknown]
Probab=23.25 E-value=83 Score=21.12 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=23.5
Q ss_pred hhcCCCCCcC---cchhhhHHHHHHHHHHHHHHHH
Q 030782 72 QDLVPGCNKV---IGKALVLDEIINYIQSLQRQVE 103 (171)
Q Consensus 72 ~~lvP~~~k~---~~KasiL~~aI~YIk~Lq~~v~ 103 (171)
.+|+|+|.=. -+-+.|+..++++++.-+..-.
T Consensus 9 ~slg~~C~f~~~a~~~~Ev~~~iv~H~k~~Hg~t~ 43 (59)
T COG5466 9 GSLGMGCGFEARADSEAEVMRRIVEHAKEAHGETE 43 (59)
T ss_pred cccCCCCcceeccCcHHHHHHHHHHHHHHhcCCcc
Confidence 4688888422 3778999999999988776433
No 62
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=23.18 E-value=2.4e+02 Score=18.90 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030782 85 ALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 117 (171)
Q Consensus 85 asiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~~~ 117 (171)
..+|.+ -|..|+.++..|+.+...+...+.
T Consensus 16 VevLK~---~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 16 VEVLKE---QIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345544 467888899999888888877654
No 63
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=22.75 E-value=60 Score=28.65 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030782 92 INYIQSLQRQVEFLSMKL 109 (171)
Q Consensus 92 I~YIk~Lq~~v~~L~~~~ 109 (171)
-+|||-|+.+|..|+.++
T Consensus 311 KEYVKCLENRVAVLENQN 328 (348)
T KOG3584|consen 311 KEYVKCLENRVAVLENQN 328 (348)
T ss_pred hHHHHHHHhHHHHHhccc
Confidence 389999999999888654
No 64
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.70 E-value=89 Score=20.25 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 030782 96 QSLQRQVEFLSMKLEA 111 (171)
Q Consensus 96 k~Lq~~v~~L~~~~e~ 111 (171)
+.++++++.++.+++.
T Consensus 51 ~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 51 RRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555555555555443
No 65
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=22.41 E-value=3.6e+02 Score=25.64 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC-CcCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 030782 56 AERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQVEFLSMKL 109 (171)
Q Consensus 56 ~ER~RR~~In~~~~~L~~lvP~~-~k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~ 109 (171)
.|-++|.+|+.-+++-..+=-.. +.+.+|..+.+.=-.-|+.|++++.....++
T Consensus 258 leekhr~rmd~VmkEW~~ae~qaKnPKAekqalnqhFQ~~v~sLEee~a~erqql 312 (615)
T KOG3540|consen 258 LEEKHRKRMDKVMKEWEEAETQAKNPKAEKQALNQHFQKTVSSLEEEAARERQQL 312 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889998877765433211 1224777777776677788888777665544
No 66
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=22.26 E-value=1.2e+02 Score=19.69 Aligned_cols=19 Identities=16% Similarity=0.438 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 030782 87 VLDEIINYIQSLQRQVEFL 105 (171)
Q Consensus 87 iL~~aI~YIk~Lq~~v~~L 105 (171)
-+++|+.+++.++.++..|
T Consensus 32 p~~EA~~f~~~ie~qL~~L 50 (52)
T PF03791_consen 32 PFQEAMEFCREIEQQLSSL 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3568888888888887765
No 67
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.10 E-value=2.7e+02 Score=18.98 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030782 96 QSLQRQVEFLSMKLEAV 112 (171)
Q Consensus 96 k~Lq~~v~~L~~~~e~~ 112 (171)
..|+.+++.|..++..+
T Consensus 39 ~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 39 AKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444444444444443
No 68
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=21.59 E-value=1.2e+02 Score=18.57 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030782 89 DEIINYIQSLQRQVEFLSMKL 109 (171)
Q Consensus 89 ~~aI~YIk~Lq~~v~~L~~~~ 109 (171)
..|-++||.|-.|++.|..++
T Consensus 8 kaaKe~IKsLt~QlK~maekl 28 (39)
T PF13713_consen 8 KAAKEVIKSLTAQLKDMAEKL 28 (39)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 456799999999999987754
No 69
>PF15392 Joubert: Joubert syndrome-associated
Probab=21.02 E-value=2.9e+02 Score=24.61 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=23.0
Q ss_pred cCccccHHHHHHHHHHHHHHHHHhhcC
Q 030782 49 ATDSHSLAERARREKISERMKILQDLV 75 (171)
Q Consensus 49 ~~~~h~~~ER~RR~~In~~~~~L~~lv 75 (171)
+++-..++.||||++|.+.+..|..+.
T Consensus 56 RrEIq~WMkRKrkERmaEYl~qlaEkR 82 (329)
T PF15392_consen 56 RREIQAWMKRKRKERMAEYLKQLAEKR 82 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677999999999999999998776
No 70
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=21.00 E-value=1.6e+02 Score=16.06 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 030782 95 IQSLQRQVEFLSMKLE 110 (171)
Q Consensus 95 Ik~Lq~~v~~L~~~~e 110 (171)
|..|+.++..|+.++.
T Consensus 3 ~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 3 MNRLRNRISDLERQLS 18 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777777776654
No 71
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=20.82 E-value=1.2e+02 Score=22.02 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030782 86 LVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 117 (171)
Q Consensus 86 siL~~aI~YIk~Lq~~v~~L~~~~e~~~~~~~ 117 (171)
..|+..++.|..|..++..|..+++.++..+.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~ 56 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLE 56 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34677777777777777777777777766553
No 72
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=20.60 E-value=2.6e+02 Score=21.42 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 030782 55 LAERARREKISERMKILQ 72 (171)
Q Consensus 55 ~~ER~RR~~In~~~~~L~ 72 (171)
..|++.|..+.+.+..+.
T Consensus 50 ~~e~~~~~~~~e~~~~~~ 67 (132)
T PF05597_consen 50 KLEKKTRKKAEEQVEEAR 67 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 357777888888777777
No 73
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=20.27 E-value=3e+02 Score=23.88 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcCcchhhhHHHH
Q 030782 57 ERARREKISERMKILQDLVPGCNKVIGKALVLDEI 91 (171)
Q Consensus 57 ER~RR~~In~~~~~L~~lvP~~~k~~~KasiL~~a 91 (171)
=|.||.+|.+.|..|...=|.. .|...|+.-
T Consensus 143 ~R~~r~~l~d~I~kLk~k~P~s----~kl~~LeqE 173 (271)
T PF13805_consen 143 SRDRRRKLQDEIAKLKYKDPQS----PKLVVLEQE 173 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTT----TTHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHhcCCCC----hHHHHHHHH
Confidence 4788999999999998876643 345555544
Done!