Query 030782
Match_columns 171
No_of_seqs 205 out of 1236
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:40:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.8 1E-19 3.5E-24 128.4 5.1 69 48-116 5-73 (82)
2 4ati_A MITF, microphthalmia-as 99.7 3.2E-18 1.1E-22 128.4 7.7 71 38-108 16-89 (118)
3 4h10_B Circadian locomoter out 99.7 5.9E-18 2E-22 116.6 4.3 60 47-106 6-65 (71)
4 1a0a_A BHLH, protein (phosphat 99.7 4.7E-18 1.6E-22 114.6 2.2 55 49-103 2-62 (63)
5 1an4_A Protein (upstream stimu 99.7 1.2E-17 4E-22 112.7 3.2 57 47-103 3-64 (65)
6 1hlo_A Protein (transcription 99.7 3.3E-17 1.1E-21 114.8 5.5 65 49-114 12-78 (80)
7 1nkp_B MAX protein, MYC proto- 99.7 5.5E-17 1.9E-21 114.3 6.2 64 50-114 3-68 (83)
8 1nkp_A C-MYC, MYC proto-oncoge 99.6 2.4E-16 8.2E-21 112.6 6.4 63 50-112 7-71 (88)
9 4h10_A ARYL hydrocarbon recept 99.6 5E-17 1.7E-21 112.6 1.4 55 45-100 5-63 (73)
10 1nlw_A MAD protein, MAX dimeri 99.6 1.5E-15 5.2E-20 106.7 7.4 66 50-115 2-69 (80)
11 3u5v_A Protein MAX, transcript 99.6 1.4E-15 4.7E-20 106.1 4.4 58 49-106 5-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.3 5.4E-13 1.8E-17 91.1 2.8 54 49-102 12-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.3 2.8E-12 9.6E-17 85.4 4.7 53 51-103 4-58 (60)
14 4f3l_A Mclock, circadian locom 99.2 2.2E-11 7.5E-16 104.5 5.8 58 45-102 8-65 (361)
15 4ath_A MITF, microphthalmia-as 99.2 7.5E-11 2.6E-15 83.1 7.3 48 61-108 4-54 (83)
16 4f3l_B BMAL1B; BHLH, PAS, circ 99.1 5.2E-11 1.8E-15 103.4 3.8 57 44-101 8-68 (387)
17 2lfh_A DNA-binding protein inh 98.9 2.9E-10 9.9E-15 77.3 1.8 46 55-100 20-67 (68)
18 4aya_A DNA-binding protein inh 98.5 1.7E-07 5.8E-12 67.8 6.8 48 57-104 33-82 (97)
19 1zme_C Proline utilization tra 78.0 2 6.8E-05 27.4 3.3 25 92-116 43-67 (70)
20 2wt7_A Proto-oncogene protein 76.0 8.2 0.00028 24.8 5.8 17 57-73 1-17 (63)
21 1pyi_A Protein (pyrimidine pat 72.3 6.9 0.00024 26.3 5.0 25 92-116 47-71 (96)
22 3muj_A Transcription factor CO 71.5 6 0.00021 29.8 4.8 36 63-98 95-133 (138)
23 2jee_A YIIU; FTSZ, septum, coi 68.3 7.5 0.00026 26.7 4.3 28 87-114 14-41 (81)
24 1dh3_A Transcription factor CR 66.4 5.1 0.00017 25.3 3.0 24 93-116 22-45 (55)
25 2oqq_A Transcription factor HY 64.8 5 0.00017 24.2 2.5 25 93-117 3-27 (42)
26 2er8_A Regulatory protein Leu3 62.4 4.3 0.00015 26.0 2.1 22 92-113 48-69 (72)
27 2wuj_A Septum site-determining 62.1 8.6 0.0003 24.3 3.5 30 86-115 27-56 (57)
28 2l5g_A GPS2 protein, G protein 61.4 22 0.00074 20.9 4.8 31 82-112 4-34 (38)
29 2dgc_A Protein (GCN4); basic d 52.9 12 0.0004 24.2 3.0 22 93-114 30-51 (63)
30 3he4_B Synzip5; heterodimeric 52.6 26 0.0009 20.8 4.2 26 87-112 4-29 (46)
31 1gd2_E Transcription factor PA 51.7 16 0.00053 24.3 3.5 13 94-106 30-42 (70)
32 1jnm_A Proto-oncogene C-JUN; B 50.5 13 0.00046 23.5 3.0 20 93-112 22-41 (62)
33 1hwt_C Protein (heme activator 50.0 5.7 0.00019 25.9 1.1 22 92-113 57-78 (81)
34 1t2k_D Cyclic-AMP-dependent tr 47.9 16 0.00054 23.1 3.0 17 94-110 23-39 (61)
35 3coq_A Regulatory protein GAL4 46.9 21 0.00071 23.4 3.6 25 92-116 44-68 (89)
36 1gk7_A Vimentin; intermediate 45.0 18 0.00063 21.2 2.7 23 88-110 15-37 (39)
37 3s4r_A Vimentin; alpha-helix, 39.1 32 0.0011 23.7 3.7 26 89-114 19-44 (93)
38 1xkm_B Distinctin chain B; por 38.0 40 0.0014 17.8 3.0 19 85-103 3-21 (26)
39 2pnv_A Small conductance calci 35.5 30 0.001 20.8 2.6 22 96-117 19-40 (43)
40 2ke4_A CDC42-interacting prote 34.8 1.1E+02 0.0039 21.2 6.2 33 83-115 59-91 (98)
41 1gu4_A CAAT/enhancer binding p 33.9 1.1E+02 0.0036 20.5 7.2 33 84-116 37-73 (78)
42 1p3q_Q VPS9P, vacuolar protein 32.9 52 0.0018 20.7 3.6 24 55-78 3-26 (54)
43 3v86_A De novo design helix; c 32.2 42 0.0014 17.8 2.6 19 94-112 1-19 (27)
44 1pd7_B MAD1; PAH2, SIN3, eukar 26.2 79 0.0027 17.0 3.0 19 83-101 3-21 (26)
45 2jqq_A Conserved oligomeric go 24.9 51 0.0017 26.2 3.0 43 61-105 53-95 (204)
46 1a93_B MAX protein, coiled coi 24.5 63 0.0021 18.5 2.6 16 96-111 17-32 (34)
47 1aq5_A Matrilin-1, CMP, cartil 24.1 1.3E+02 0.0044 18.4 4.1 32 85-116 15-46 (47)
48 3w03_C DNA repair protein XRCC 23.7 71 0.0024 24.9 3.6 30 87-116 146-175 (184)
49 1kd8_B GABH BLL, GCN4 acid bas 22.3 1E+02 0.0034 17.8 3.2 15 95-109 3-17 (36)
50 2yy0_A C-MYC-binding protein; 22.0 71 0.0024 19.8 2.7 22 95-116 28-49 (53)
51 1d8j_A General transcription f 21.4 68 0.0023 21.8 2.7 18 83-100 8-25 (81)
52 1ci6_A Transcription factor AT 21.2 1.1E+02 0.0038 19.3 3.7 20 53-72 10-29 (63)
53 3ljm_A Coil Ser L9C; de novo d 20.7 92 0.0032 17.0 2.6 17 97-113 12-28 (31)
54 1m2x_A Class B carbapenemase B 20.3 98 0.0034 23.0 3.8 30 74-104 192-221 (223)
55 2wq1_A General control protein 20.2 92 0.0031 17.7 2.6 16 95-110 2-17 (33)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.78 E-value=1e-19 Score=128.44 Aligned_cols=69 Identities=26% Similarity=0.403 Sum_probs=62.6
Q ss_pred CcCccccHHHHHHHHHHHHHHHHHhhcCCCCCcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030782 48 QATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 48 ~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~~ 116 (171)
..+.+|+.+||+||++||++|..|++|||++...+|||+||++||+||++|+.+++.|+.+++.|...+
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999999844459999999999999999999999999998887655
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.74 E-value=3.2e-18 Score=128.39 Aligned_cols=71 Identities=32% Similarity=0.451 Sum_probs=51.1
Q ss_pred ccccccccCCCcCccccHHHHHHHHHHHHHHHHHhhcCCCCCc---CcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 030782 38 DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQVEFLSMK 108 (171)
Q Consensus 38 ~~~~~r~~r~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k---~~~KasiL~~aI~YIk~Lq~~v~~L~~~ 108 (171)
+......++.+.+.+|+.+||+||++||++|..|++|||++.+ .++|++||++||+||++||.+++.|...
T Consensus 16 ~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 16 SEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677888889999999999999999999999999998853 3589999999999999999999999864
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.70 E-value=5.9e-18 Score=116.64 Aligned_cols=60 Identities=22% Similarity=0.414 Sum_probs=53.6
Q ss_pred CCcCccccHHHHHHHHHHHHHHHHHhhcCCCCCcCcchhhhHHHHHHHHHHHHHHHHHHH
Q 030782 47 GQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLS 106 (171)
Q Consensus 47 ~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k~~~KasiL~~aI~YIk~Lq~~v~~L~ 106 (171)
...+.+|+.+||+||++||++|.+|++|||++...+||++||++||+||++||.++..|+
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 345678999999999999999999999999865445999999999999999999998775
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.69 E-value=4.7e-18 Score=114.59 Aligned_cols=55 Identities=29% Similarity=0.425 Sum_probs=48.3
Q ss_pred cCccccHHHHHHHHHHHHHHHHHhhcCCCCC------cCcchhhhHHHHHHHHHHHHHHHH
Q 030782 49 ATDSHSLAERARREKISERMKILQDLVPGCN------KVIGKALVLDEIINYIQSLQRQVE 103 (171)
Q Consensus 49 ~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~------k~~~KasiL~~aI~YIk~Lq~~v~ 103 (171)
.+.+|+++||+||++||.+|..|++|||.+. ..++||+||+.||+||++||++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 3578999999999999999999999999652 224899999999999999998763
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.68 E-value=1.2e-17 Score=112.72 Aligned_cols=57 Identities=26% Similarity=0.416 Sum_probs=50.4
Q ss_pred CCcCccccHHHHHHHHHHHHHHHHHhhcCCCCCc-----CcchhhhHHHHHHHHHHHHHHHH
Q 030782 47 GQATDSHSLAERARREKISERMKILQDLVPGCNK-----VIGKALVLDEIINYIQSLQRQVE 103 (171)
Q Consensus 47 ~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k-----~~~KasiL~~aI~YIk~Lq~~v~ 103 (171)
...+.+|+.+||+||++||++|..|++|||.+.. .++|++||++||+||++||.+++
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3456789999999999999999999999998852 35999999999999999998753
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.68 E-value=3.3e-17 Score=114.85 Aligned_cols=65 Identities=28% Similarity=0.479 Sum_probs=59.3
Q ss_pred cCccccHHHHHHHHHHHHHHHHHhhcCCCC--CcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030782 49 ATDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNS 114 (171)
Q Consensus 49 ~~~~h~~~ER~RR~~In~~~~~L~~lvP~~--~k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~ 114 (171)
.+..|+..||+||..||++|..|+++||.+ .| ++|++||..||+||++|+.+++.|+.+++.|..
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999986 35 599999999999999999999999999887753
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.67 E-value=5.5e-17 Score=114.25 Aligned_cols=64 Identities=28% Similarity=0.488 Sum_probs=56.5
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC--CcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030782 50 TDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNS 114 (171)
Q Consensus 50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~--~k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~ 114 (171)
+..|+..||+||+.||++|..|+++||.+ .| ++|++||..||+||++|+.+++.|+.+++.+..
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999985 45 599999999999999999988888877666544
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.64 E-value=2.4e-16 Score=112.60 Aligned_cols=63 Identities=24% Similarity=0.387 Sum_probs=54.4
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCCC--cCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030782 50 TDSHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAV 112 (171)
Q Consensus 50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~~--k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~ 112 (171)
+..|+.+||+||++||++|..|+.+||.+. .+++|++||.+||+||++|+.+.+.|..+++.+
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999763 335999999999999999999988876655444
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.62 E-value=5e-17 Score=112.57 Aligned_cols=55 Identities=33% Similarity=0.535 Sum_probs=48.8
Q ss_pred cCCCcCccccHHHHHHHHHHHHHHHHHhhcCCCC----CcCcchhhhHHHHHHHHHHHHH
Q 030782 45 RRGQATDSHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQR 100 (171)
Q Consensus 45 ~r~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~----~k~~~KasiL~~aI~YIk~Lq~ 100 (171)
+..+.+.+|+.+||+||++||++|.+|+.|||.| .| +|||+||+.||+||+.|+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~K-ldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSC-CCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHcccccccccc-ccHHHHHHHHHHHHHHHhc
Confidence 4455667899999999999999999999999987 45 4999999999999999974
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.60 E-value=1.5e-15 Score=106.71 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=57.1
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCCC--cCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030782 50 TDSHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR 115 (171)
Q Consensus 50 ~~~h~~~ER~RR~~In~~~~~L~~lvP~~~--k~~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~ 115 (171)
+..||..||+||..||++|..|+++||.+. ...+|+.||.+|++||++|+.+.+.|..+++.+...
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e 69 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQRE 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999652 235999999999999999999999888877766543
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.57 E-value=1.4e-15 Score=106.06 Aligned_cols=58 Identities=28% Similarity=0.363 Sum_probs=48.6
Q ss_pred cCccccHHHHHHHHHHHHHHHHHhhcCCCC---CcCcchhhhHHHHHHHHHHHHHHHHHHH
Q 030782 49 ATDSHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVEFLS 106 (171)
Q Consensus 49 ~~~~h~~~ER~RR~~In~~~~~L~~lvP~~---~k~~~KasiL~~aI~YIk~Lq~~v~~L~ 106 (171)
.+..||..||+||..||++|..|+.+||.+ .+.++|+.||..||+||++|++++++++
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346899999999999999999999999953 3334799999999999999999999774
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.32 E-value=5.4e-13 Score=91.05 Aligned_cols=54 Identities=26% Similarity=0.402 Sum_probs=47.8
Q ss_pred cCccccHHHHHHHHHHHHHHHHHhhcCCCC-CcCcchhhhHHHHHHHHHHHHHHH
Q 030782 49 ATDSHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQV 102 (171)
Q Consensus 49 ~~~~h~~~ER~RR~~In~~~~~L~~lvP~~-~k~~~KasiL~~aI~YIk~Lq~~v 102 (171)
.+..||..||+|+..||+.|..|+.+||.. .+.++|+.||..||+||.+|++.+
T Consensus 12 rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999999965 344699999999999999999765
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.28 E-value=2.8e-12 Score=85.45 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=47.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC--CcCcchhhhHHHHHHHHHHHHHHHH
Q 030782 51 DSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVE 103 (171)
Q Consensus 51 ~~h~~~ER~RR~~In~~~~~L~~lvP~~--~k~~~KasiL~~aI~YIk~Lq~~v~ 103 (171)
..||..||+|+..||+.|..|+.+||.. .++++|+.||..||+||..|++.++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999965 3446999999999999999998763
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.17 E-value=2.2e-11 Score=104.50 Aligned_cols=58 Identities=21% Similarity=0.408 Sum_probs=41.9
Q ss_pred cCCCcCccccHHHHHHHHHHHHHHHHHhhcCCCCCcCcchhhhHHHHHHHHHHHHHHH
Q 030782 45 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQV 102 (171)
Q Consensus 45 ~r~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~~~k~~~KasiL~~aI~YIk~Lq~~v 102 (171)
|....+.+|+.+||+||++||..|.+|++|||....++||++||+.||+||+.|+...
T Consensus 8 ~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 8 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 3445567899999999999999999999999954333599999999999999998653
No 15
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=99.16 E-value=7.5e-11 Score=83.10 Aligned_cols=48 Identities=31% Similarity=0.454 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhcCCCCCc---CcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 030782 61 REKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQVEFLSMK 108 (171)
Q Consensus 61 R~~In~~~~~L~~lvP~~~k---~~~KasiL~~aI~YIk~Lq~~v~~L~~~ 108 (171)
|++||++|.+|..|||.++. .++|++||.+||+||++||.+++.+...
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998643 2699999999999999999998877753
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.07 E-value=5.2e-11 Score=103.37 Aligned_cols=57 Identities=30% Similarity=0.445 Sum_probs=48.3
Q ss_pred ccCCCcCccccHHHHHHHHHHHHHHHHHhhcCCC----CCcCcchhhhHHHHHHHHHHHHHH
Q 030782 44 ARRGQATDSHSLAERARREKISERMKILQDLVPG----CNKVIGKALVLDEIINYIQSLQRQ 101 (171)
Q Consensus 44 ~~r~~~~~~h~~~ER~RR~~In~~~~~L~~lvP~----~~k~~~KasiL~~aI~YIk~Lq~~ 101 (171)
.|.+.++.+|+.+||+||++||+.|.+|+.|||. ..|+ ||++||+.||+||+.|+..
T Consensus 8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence 3445667899999999999999999999999994 4565 9999999999999999843
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.91 E-value=2.9e-10 Score=77.31 Aligned_cols=46 Identities=24% Similarity=0.417 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC--CcCcchhhhHHHHHHHHHHHHH
Q 030782 55 LAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQR 100 (171)
Q Consensus 55 ~~ER~RR~~In~~~~~L~~lvP~~--~k~~~KasiL~~aI~YIk~Lq~ 100 (171)
.-||+|...||+.|..||.+||.. +++++|..||+.||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 348999999999999999999975 3446999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.54 E-value=1.7e-07 Score=67.78 Aligned_cols=48 Identities=27% Similarity=0.414 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC--CcCcchhhhHHHHHHHHHHHHHHHHH
Q 030782 57 ERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEF 104 (171)
Q Consensus 57 ER~RR~~In~~~~~L~~lvP~~--~k~~~KasiL~~aI~YIk~Lq~~v~~ 104 (171)
||.|=..||+.|..||.+||.. .++++|..+|..||+||..|+..++.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 5778889999999999999965 44569999999999999999987763
No 19
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=78.04 E-value=2 Score=27.38 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 030782 92 INYIQSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 92 I~YIk~Lq~~v~~L~~~~e~~~~~~ 116 (171)
-.||..|+.++..|+..+..|...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999998887765
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=75.96 E-value=8.2 Score=24.75 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 030782 57 ERARREKISERMKILQD 73 (171)
Q Consensus 57 ER~RR~~In~~~~~L~~ 73 (171)
||++|....+++.+.++
T Consensus 1 Ekr~rrrerNR~AA~rc 17 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC 17 (63)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH
Confidence 45566666666666665
No 21
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=72.26 E-value=6.9 Score=26.34 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 030782 92 INYIQSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 92 I~YIk~Lq~~v~~L~~~~e~~~~~~ 116 (171)
-.||..|+.++..|+..+..+....
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~~~ 71 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGVDP 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4599999999999999888776543
No 22
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=71.47 E-value=6 Score=29.80 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhcCCCC---CcCcchhhhHHHHHHHHHHH
Q 030782 63 KISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSL 98 (171)
Q Consensus 63 ~In~~~~~L~~lvP~~---~k~~~KasiL~~aI~YIk~L 98 (171)
.|.-+|..|+.+||.- ...+-|-.||..|.|+++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 5889999999999843 33468999999999998765
No 23
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=68.31 E-value=7.5 Score=26.71 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030782 87 VLDEIINYIQSLQRQVEFLSMKLEAVNS 114 (171)
Q Consensus 87 iL~~aI~YIk~Lq~~v~~L~~~~e~~~~ 114 (171)
=++.||+-|.-||.++++|+.++..+..
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999988887766543
No 24
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=66.43 E-value=5.1 Score=25.28 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 030782 93 NYIQSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 93 ~YIk~Lq~~v~~L~~~~e~~~~~~ 116 (171)
.||..|+.+|..|+.++..|...+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777666665544
No 25
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=64.84 E-value=5 Score=24.24 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Q 030782 93 NYIQSLQRQVEFLSMKLEAVNSRMN 117 (171)
Q Consensus 93 ~YIk~Lq~~v~~L~~~~e~~~~~~~ 117 (171)
.|+-.|+.+++.|+..+..|+.+++
T Consensus 3 aYl~eLE~r~k~le~~naeLEervs 27 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888777777666553
No 26
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=62.36 E-value=4.3 Score=26.00 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 030782 92 INYIQSLQRQVEFLSMKLEAVN 113 (171)
Q Consensus 92 I~YIk~Lq~~v~~L~~~~e~~~ 113 (171)
-.||..|+.+|..|+..++.+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999998877553
No 27
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=62.13 E-value=8.6 Score=24.28 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030782 86 LVLDEIINYIQSLQRQVEFLSMKLEAVNSR 115 (171)
Q Consensus 86 siL~~aI~YIk~Lq~~v~~L~~~~e~~~~~ 115 (171)
..|+..++-+..|..++..|+.+++.++.+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999988877654
No 28
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=61.42 E-value=22 Score=20.90 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=26.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030782 82 IGKALVLDEIINYIQSLQRQVEFLSMKLEAV 112 (171)
Q Consensus 82 ~~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~ 112 (171)
+..+..|+++-+-|..|+.+++.|..++-++
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999877654
No 29
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=52.91 E-value=12 Score=24.20 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 030782 93 NYIQSLQRQVEFLSMKLEAVNS 114 (171)
Q Consensus 93 ~YIk~Lq~~v~~L~~~~e~~~~ 114 (171)
+||..|+.+|..|+.++..|..
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444443
No 30
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=52.64 E-value=26 Score=20.82 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030782 87 VLDEIINYIQSLQRQVEFLSMKLEAV 112 (171)
Q Consensus 87 iL~~aI~YIk~Lq~~v~~L~~~~e~~ 112 (171)
.+.+--+||+.|+++..+|..-.+.+
T Consensus 4 tvkelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 34566789999999998887644443
No 31
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=51.65 E-value=16 Score=24.27 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 030782 94 YIQSLQRQVEFLS 106 (171)
Q Consensus 94 YIk~Lq~~v~~L~ 106 (171)
||+.|+.+|..|+
T Consensus 30 ~i~~LE~~v~~le 42 (70)
T 1gd2_E 30 HLKALETQVVTLK 42 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 32
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=50.46 E-value=13 Score=23.54 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030782 93 NYIQSLQRQVEFLSMKLEAV 112 (171)
Q Consensus 93 ~YIk~Lq~~v~~L~~~~e~~ 112 (171)
+||..|+.+|..|+.+...|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L 41 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSEL 41 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 33
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=50.04 E-value=5.7 Score=25.90 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 030782 92 INYIQSLQRQVEFLSMKLEAVN 113 (171)
Q Consensus 92 I~YIk~Lq~~v~~L~~~~e~~~ 113 (171)
-.||..|+.+|..|+..+..+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999887665553
No 34
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=47.92 E-value=16 Score=23.11 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030782 94 YIQSLQRQVEFLSMKLE 110 (171)
Q Consensus 94 YIk~Lq~~v~~L~~~~e 110 (171)
|+..|+.++..|+.+..
T Consensus 23 ~~~~Le~~~~~L~~~n~ 39 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNG 39 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444443333
No 35
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=46.94 E-value=21 Score=23.38 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 030782 92 INYIQSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 92 I~YIk~Lq~~v~~L~~~~e~~~~~~ 116 (171)
..||..|+.+++.|+..+..+.+..
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~~~ 68 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFPRE 68 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCch
Confidence 4699999999999999888776543
No 36
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=44.98 E-value=18 Score=21.21 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030782 88 LDEIINYIQSLQRQVEFLSMKLE 110 (171)
Q Consensus 88 L~~aI~YIk~Lq~~v~~L~~~~e 110 (171)
|..-|+-|+.|+++...|+.++.
T Consensus 15 lAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 15 FANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456778889999998888764
No 37
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=39.07 E-value=32 Score=23.74 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030782 89 DEIINYIQSLQRQVEFLSMKLEAVNS 114 (171)
Q Consensus 89 ~~aI~YIk~Lq~~v~~L~~~~e~~~~ 114 (171)
..=|+-|++|+++++.|+.+++.+..
T Consensus 19 AsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 19 ANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34466689999999999988877654
No 38
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=37.97 E-value=40 Score=17.78 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 030782 85 ALVLDEIINYIQSLQRQVE 103 (171)
Q Consensus 85 asiL~~aI~YIk~Lq~~v~ 103 (171)
.+-|-+|-.|+.+|+..++
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 3456788889988887664
No 39
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=35.51 E-value=30 Score=20.84 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccc
Q 030782 96 QSLQRQVEFLSMKLEAVNSRMN 117 (171)
Q Consensus 96 k~Lq~~v~~L~~~~e~~~~~~~ 117 (171)
..|++++..|+.+++.+...+.
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444
No 40
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=34.75 E-value=1.1e+02 Score=21.17 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=26.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030782 83 GKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR 115 (171)
Q Consensus 83 ~KasiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~ 115 (171)
+-..-|.++..-|..|+..+..++..+..++..
T Consensus 59 s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 59 SLEPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345568888888999999999999888877643
No 41
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=33.85 E-value=1.1e+02 Score=20.51 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHH----HHHHHHHHHHHHHHHHHhccc
Q 030782 84 KALVLDEIINYI----QSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 84 KasiL~~aI~YI----k~Lq~~v~~L~~~~e~~~~~~ 116 (171)
+..-+...++++ ..|+.+|..|..++..|..-+
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554 345556666666655555433
No 42
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=32.92 E-value=52 Score=20.67 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC
Q 030782 55 LAERARREKISERMKILQDLVPGC 78 (171)
Q Consensus 55 ~~ER~RR~~In~~~~~L~~lvP~~ 78 (171)
.++|-+|...++-+..|+.+.|..
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~l 26 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDM 26 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHcccC
Confidence 568889999999999999999976
No 43
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=32.21 E-value=42 Score=17.83 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030782 94 YIQSLQRQVEFLSMKLEAV 112 (171)
Q Consensus 94 YIk~Lq~~v~~L~~~~e~~ 112 (171)
|+-+|+.+|-+|.-++..+
T Consensus 1 yvyqlkdevgelkgevral 19 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRAL 19 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHH
Confidence 4455666666655555444
No 44
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=26.22 E-value=79 Score=16.99 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=14.7
Q ss_pred chhhhHHHHHHHHHHHHHH
Q 030782 83 GKALVLDEIINYIQSLQRQ 101 (171)
Q Consensus 83 ~KasiL~~aI~YIk~Lq~~ 101 (171)
....+|=+|.+||...+.+
T Consensus 3 ~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 3 MNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CSTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4567888999999877654
No 45
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=24.86 E-value=51 Score=26.17 Aligned_cols=43 Identities=14% Similarity=0.297 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhcCCCCCcCcchhhhHHHHHHHHHHHHHHHHHH
Q 030782 61 REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFL 105 (171)
Q Consensus 61 R~~In~~~~~L~~lvP~~~k~~~KasiL~~aI~YIk~Lq~~v~~L 105 (171)
|..++.-+..|+.|+-..- ...-.++..||+|++.|-+-...|
T Consensus 53 ~~Dl~~F~~QL~qL~~~~i--~~Tre~v~d~l~YLkkLD~l~~~L 95 (204)
T 2jqq_A 53 QSDLQKFMTQLDHLIKDDI--SNTQEIIKDVLEYLKKLDEIYGSL 95 (204)
T ss_dssp HHHHHHHHHHHHHHHHHSC--STTHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777778887764321 256788999999999998766643
No 46
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=24.50 E-value=63 Score=18.51 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 030782 96 QSLQRQVEFLSMKLEA 111 (171)
Q Consensus 96 k~Lq~~v~~L~~~~e~ 111 (171)
..|+.++..|++++..
T Consensus 17 ddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 17 DDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4556666666666544
No 47
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=24.08 E-value=1.3e+02 Score=18.40 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030782 85 ALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 85 asiL~~aI~YIk~Lq~~v~~L~~~~e~~~~~~ 116 (171)
...-..+.+-|+.|.+++..+..+++.++.++
T Consensus 15 v~FQ~~v~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 15 VKFQTKVEELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55667888899999999998888888886543
No 48
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=23.66 E-value=71 Score=24.91 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030782 87 VLDEIINYIQSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 87 iL~~aI~YIk~Lq~~v~~L~~~~e~~~~~~ 116 (171)
||+-+++-|..|+.+++.|..+++.|....
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666667889999999888888776543
No 49
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=22.28 E-value=1e+02 Score=17.82 Aligned_cols=15 Identities=40% Similarity=0.538 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 030782 95 IQSLQRQVEFLSMKL 109 (171)
Q Consensus 95 Ik~Lq~~v~~L~~~~ 109 (171)
+++|+..|+.|-.++
T Consensus 3 MnQLE~KVEeLl~~~ 17 (36)
T 1kd8_B 3 VKQLKAKVEELKSKL 17 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh
Confidence 445555555444433
No 50
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.97 E-value=71 Score=19.75 Aligned_cols=22 Identities=5% Similarity=0.262 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 030782 95 IQSLQRQVEFLSMKLEAVNSRM 116 (171)
Q Consensus 95 Ik~Lq~~v~~L~~~~e~~~~~~ 116 (171)
+..|+.++..|..+++.+..++
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655555544
No 51
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=21.36 E-value=68 Score=21.83 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.2
Q ss_pred chhhhHHHHHHHHHHHHH
Q 030782 83 GKALVLDEIINYIQSLQR 100 (171)
Q Consensus 83 ~KasiL~~aI~YIk~Lq~ 100 (171)
-|.++|.++|+|+|.-++
T Consensus 8 ~~f~~lakiV~~mK~rh~ 25 (81)
T 1d8j_A 8 YKFGVLAKIVNYMKTRHQ 25 (81)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred cceehHHHHHHHHHHhhc
Confidence 589999999999998443
No 52
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.18 E-value=1.1e+02 Score=19.26 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=10.3
Q ss_pred ccHHHHHHHHHHHHHHHHHh
Q 030782 53 HSLAERARREKISERMKILQ 72 (171)
Q Consensus 53 h~~~ER~RR~~In~~~~~L~ 72 (171)
...+-++-|.+-+..+..|.
T Consensus 10 Nr~AA~R~R~KKk~~~~~le 29 (63)
T 1ci6_A 10 NKTAATRYRQKKRAEQEALT 29 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444
No 53
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=20.73 E-value=92 Score=16.98 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 030782 97 SLQRQVEFLSMKLEAVN 113 (171)
Q Consensus 97 ~Lq~~v~~L~~~~e~~~ 113 (171)
-|+..++.|+.+++.++
T Consensus 12 alesklqalekkleale 28 (31)
T 3ljm_A 12 ALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35556666666666654
No 54
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=20.27 E-value=98 Score=23.01 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=20.6
Q ss_pred cCCCCCcCcchhhhHHHHHHHHHHHHHHHHH
Q 030782 74 LVPGCNKVIGKALVLDEIINYIQSLQRQVEF 104 (171)
Q Consensus 74 lvP~~~k~~~KasiL~~aI~YIk~Lq~~v~~ 104 (171)
++|+-.... ....|+.+++|++.+++++++
T Consensus 192 i~pgHg~~~-~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 192 VVAGHDDWK-DQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp EEESBSCCC-STTHHHHHHHHHHHHHHTC--
T ss_pred EEeCCCCcC-CHHHHHHHHHHHHHHHHHHhc
Confidence 455544433 356899999999999988753
No 55
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.17 E-value=92 Score=17.65 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 030782 95 IQSLQRQVEFLSMKLE 110 (171)
Q Consensus 95 Ik~Lq~~v~~L~~~~e 110 (171)
+++|+..|+.|-.++.
T Consensus 2 MnQLEdKVEell~~~~ 17 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIY 17 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhH
Confidence 3455555554444333
Done!