BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030783
MLNMFSLRGLPWVSSSDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSA
RLSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLS
DVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVLVILIYLYV

High Scoring Gene Products

Symbol, full name Information P value
AT4G23895 protein from Arabidopsis thaliana 7.4e-66

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030783
        (171 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1006230394 - symbol:AT4G23895 species:3702 "Ar...   670  7.4e-66   1


>TAIR|locus:1006230394 [details] [associations]
            symbol:AT4G23895 species:3702 "Arabidopsis thaliana"
            [GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005543 "phospholipid
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0006165 "nucleoside diphosphate phosphorylation" evidence=IEA]
            [GO:0006183 "GTP biosynthetic process" evidence=IEA] [GO:0006228
            "UTP biosynthetic process" evidence=IEA] [GO:0006241 "CTP
            biosynthetic process" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM] Pfam:PF00169 InterPro:IPR001849 PROSITE:PS50003
            SMART:SM00233 EMBL:CP002687 GO:GO:0005543 Gene3D:2.30.29.30
            InterPro:IPR011993 UniGene:At.32397 IPI:IPI00546658
            RefSeq:NP_001078437.1 RefSeq:NP_974602.1 ProteinModelPortal:F4JPD9
            SMR:F4JPD9 PRIDE:F4JPD9 EnsemblPlants:AT4G23895.1
            EnsemblPlants:AT4G23895.2 GeneID:2745723 KEGG:ath:AT4G23895
            Uniprot:F4JPD9
        Length = 247

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 126/162 (77%), Positives = 144/162 (88%)

Query:     1 MLNMFSLRGLPWVSSSDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSA 60
             MLN+F+LR LPWVS  DGQEKVEL+A ELESLRSEL+D+E+REA+LKAQLEHVDE+LRSA
Sbjct:    60 MLNLFTLRRLPWVS--DGQEKVELSAAELESLRSELSDMEEREAYLKAQLEHVDEVLRSA 117

Query:    61 RLSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLS 120
             RLSGYL+IR+RW  LPGEPPPIDDT+VDDWLPRF+VL G C+FFYLLSTDLSPQDST+L+
Sbjct:   118 RLSGYLFIRSRWAALPGEPPPIDDTEVDDWLPRFVVLQGPCLFFYLLSTDLSPQDSTLLA 177

Query:   121 DVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQV 162
             D+VE+ S+PS TRE  E  YCFYILTR GLR ECSS SK QV
Sbjct:   178 DIVEIGSVPSYTREFDETHYCFYILTRQGLRFECSSTSKTQV 219


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      171       171   0.00090  108 3  11 22  0.38    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  597 (63 KB)
  Total size of DFA:  153 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.46u 0.21s 19.67t   Elapsed:  00:00:01
  Total cpu time:  19.46u 0.21s 19.67t   Elapsed:  00:00:01
  Start:  Thu May  9 21:09:06 2013   End:  Thu May  9 21:09:07 2013

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