BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030783
         (171 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
 pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
 pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
          Length = 854

 Score = 27.7 bits (60), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 19  QEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSAR 61
           +EK   +   L+++ +E+A L +  A L+A+ E   EILR  R
Sbjct: 422 KEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLR 464


>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
           Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
           Hp0859)
 pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
           Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
           Hp0859)
 pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
           Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
           Hp0859)
 pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
           Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
           Hp0859)
 pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
           Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
           Hp0859)
          Length = 362

 Score = 27.7 bits (60), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 39  LEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLP 76
           L D E+ +K  L H+  I +  R  G L  +   KP+P
Sbjct: 307 LYDLESGIKDYLPHIHAIFKGQRAKGELNSKLEGKPIP 344


>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
           Of Pepp1
 pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology Domain
           In Complex With Inositol 1,3,4,5-Tetrakisphosphate
          Length = 123

 Score = 26.2 bits (56), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 83  DDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVL 119
           D + +  W  R+ VL G C+F+Y  S + S   S +L
Sbjct: 21  DSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLL 57


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,717,030
Number of Sequences: 62578
Number of extensions: 177276
Number of successful extensions: 513
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 10
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)