BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030783
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P78314|3BP2_HUMAN SH3 domain-binding protein 2 OS=Homo sapiens GN=SH3BP2 PE=1 SV=2
Length = 561
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 90 WLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQY-CFYILTRH 148
W RF+++H C++++ ST SPQ + LS V T N + +I +H
Sbjct: 46 WPLRFVIIHKRCVYYFKSSTSASPQGAFSLSGYNRVMRAAEETTSNNVFPFKIIHISKKH 105
>sp|Q06649|3BP2_MOUSE SH3 domain-binding protein 2 OS=Mus musculus GN=Sh3bp2 PE=1 SV=1
Length = 559
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 90 WLPRFIVLHGSCIFFYLLSTDLSPQDSTVLS 120
W RF+++H CI+++ ST SPQ + LS
Sbjct: 46 WPLRFVIIHKRCIYYFKSSTSASPQGAFSLS 76
>sp|Q835R8|GRPE_ENTFA Protein GrpE OS=Enterococcus faecalis (strain ATCC 700802 / V583)
GN=grpE PE=3 SV=1
Length = 179
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 43/69 (62%), Gaps = 6/69 (8%)
Query: 18 GQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLPG 77
G +VE+ ATE+E+L++EL+++ED+ +A++ ++ ++ R L +R R + L G
Sbjct: 22 GVSEVEVEATEIENLKAELSEMEDKFLRARAEIANMSNRNKNER---ELLVRYRSQDL-G 77
Query: 78 EP--PPIDD 84
+ P ID+
Sbjct: 78 KKILPSIDN 86
>sp|A7I3Q0|RF1_CAMHC Peptide chain release factor 1 OS=Campylobacter hominis (strain
ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=prfA
PE=3 SV=1
Length = 355
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 13 VSSSDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEIL---RSARLSGYLYIR 69
V++ DG+ + + ++ L++ L DL+++E K Q E D++ RS R+ Y Y +
Sbjct: 251 VTNQDGKSQHKNKEAAMKVLKARLYDLQEKERKAKEQSERKDQVGTGDRSGRIRTYNYPQ 310
Query: 70 TR 71
R
Sbjct: 311 NR 312
>sp|Q75ZQ2|URED_HALMA Urease accessory protein UreD OS=Haloarcula marismortui (strain
ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=ureD
PE=3 SV=1
Length = 299
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 89 DWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVV 123
D++P +LH + LS DL+P + V+SDVV
Sbjct: 131 DYVPEPTILHADSRYLQELSVDLAPGATAVVSDVV 165
>sp|Q9LS42|CASP_ARATH Protein CASP OS=Arabidopsis thaliana GN=CASP PE=1 SV=2
Length = 689
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 4 MFSLRGLPWVSSSDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDE 55
+F LR ++ Q +V L E+E ++ L LE + HL++QL+ +E
Sbjct: 240 LFELRAQSDEETAGKQSEVSLLMDEVERAQTRLLTLEREKGHLRSQLQTANE 291
>sp|P90901|IFA1_CAEEL Intermediate filament protein ifa-1 OS=Caenorhabditis elegans
GN=ifa-1 PE=1 SV=2
Length = 575
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 18 GQEKVELTATELESLRSELADLEDREAHLKAQLEHVD 54
+E+V+ T+L LR +LADLE R + L+ Q++ ++
Sbjct: 323 AKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELN 359
>sp|Q9NX02|NALP2_HUMAN NACHT, LRR and PYD domains-containing protein 2 OS=Homo sapiens
GN=NLRP2 PE=1 SV=1
Length = 1062
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 13 VSSSDGQEKVELTATELESLRSELADLEDREAHLKAQL-EHVDEILRSARLSGYLYIRTR 71
V +DG++ VE+ T +S E+A L+ E + L E + +R A L + +
Sbjct: 47 VDKADGKQLVEILTTHCDSYWVEMASLQVFEKMHRMDLSERAKDEVREAALKSF----NK 102
Query: 72 WKPLP-----GEPPPIDDTDVDDWLPRF 94
KPL E PP+ DVD+ L RF
Sbjct: 103 RKPLSLGITRKERPPL---DVDEMLERF 127
>sp|O58734|SYP_PYRHO Proline--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=proS PE=3
SV=2
Length = 480
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 37 ADLEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLPG 77
AD ED E +K LE D ++R L+ + R W PG
Sbjct: 166 ADFEDAERQIKEDLEIFDNLMRKLALAYIISKRPEWDKFPG 206
>sp|Q96EA4|SPDLY_HUMAN Protein Spindly OS=Homo sapiens GN=SPDL1 PE=1 SV=2
Length = 605
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 13 VSSSDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEIL 57
+S S GQE EL T++E L+ EL + E LK Q++H E+L
Sbjct: 98 LSRSHGQEVNELK-TKIEKLKVELDEARLSEKQLKHQVDHQKELL 141
>sp|Q8S8N9|GOGC1_ARATH Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2
Length = 707
Score = 30.4 bits (67), Expect = 5.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 17 DGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGYLYIR 69
D +EK+ L E++ LR E+A ++ R+A ++ EH + R L+ LY +
Sbjct: 520 DAEEKLSLMEAEMQKLRVEMAAMK-RDAEHYSRQEHTELEKRYRELTDLLYYK 571
>sp|Q5VTH9|WDR78_HUMAN WD repeat-containing protein 78 OS=Homo sapiens GN=WDR78 PE=2 SV=1
Length = 848
Score = 30.0 bits (66), Expect = 7.1, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 13 VSSSDGQEKVELTATELESLR-----SELADLEDREAHLKAQLEHVDEILRSARLSGYLY 67
V+ D ++ +E+ TE E+LR + + +E EA Q E+L RL LY
Sbjct: 227 VTKEDLEKNIEIILTETETLRFFDLPTVMVSVESEEAEKVTQRNKNYEVLCRNRLGNDLY 286
Query: 68 IRTRWKPLPGEPPPID 83
+ + G P D
Sbjct: 287 VERMMQTFNGAPKNKD 302
>sp|O33926|GYRA_THEMA DNA gyrase subunit A OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=gyrA PE=3 SV=2
Length = 804
Score = 30.0 bits (66), Expect = 7.8, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 24 LTATELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLPGEPPPID 83
LT+ E+E+L++E +DL + + +K LE DE ++ +LY++ ++ G+P +
Sbjct: 428 LTSLEIENLQNEYSDLVRKISEVKEILEK-DEKVKEIMKKEFLYLKQQY----GDPRRTE 482
Query: 84 DTD 86
TD
Sbjct: 483 VTD 485
>sp|Q2WEA5|TRPM1_RAT Transient receptor potential cation channel subfamily M member 1
OS=Rattus norvegicus GN=Trpm1 PE=2 SV=1
Length = 1628
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 14 SSSDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVD 54
SSSD E++ +T+ +E++ L ++ +RE +KA L+ VD
Sbjct: 1227 SSSD--ERIRVTSERVENMSMRLEEINERENFMKASLQTVD 1265
>sp|Q4R7H3|SPDLY_MACFA Protein Spindly OS=Macaca fascicularis GN=SPDL1 PE=2 SV=1
Length = 605
Score = 29.6 bits (65), Expect = 9.9, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 13 VSSSDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEIL 57
+S S GQE EL +++E L+ EL + E LK Q++H E+L
Sbjct: 98 LSRSHGQEVNELK-SKIEKLKVELDEARLSEKQLKHQVDHQKELL 141
>sp|Q21827|GPTC1_CAEEL G patch domain-containing protein 1 homolog OS=Caenorhabditis
elegans GN=R07E5.1 PE=1 SV=1
Length = 812
Score = 29.6 bits (65), Expect = 10.0, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 2 LNMFSLRGLPWVSSSDGQEKVELTATELESLRSELAD---LEDREAHLKAQLEHVDEILR 58
+N + G ++ + + ++ A E+E +E EDR+ + ++E DE +R
Sbjct: 360 VNALEIGGKSSKKPTERRSRWDIKANEVEKRDNERGGGEAEEDRDRRQRNRIEFPDEPMR 419
Query: 59 SARLSGYLYIRTRWKPLP 76
AR +L+ R P P
Sbjct: 420 QARFKEFLHYIRRGLPYP 437
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,707,460
Number of Sequences: 539616
Number of extensions: 2356087
Number of successful extensions: 9595
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 9562
Number of HSP's gapped (non-prelim): 49
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)