Query 030783
Match_columns 171
No_of_seqs 15 out of 17
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 04:30:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00169 PH: PH domain; Inter 98.6 3E-08 6.5E-13 63.7 1.9 93 62-169 3-99 (104)
2 smart00233 PH Pleckstrin homol 98.1 5.3E-06 1.1E-10 51.5 4.1 92 62-169 3-97 (102)
3 cd01246 PH_oxysterol_bp Oxyste 98.0 4.6E-06 1E-10 54.8 3.0 86 62-169 1-88 (91)
4 cd01250 PH_centaurin Centaurin 97.9 1.5E-05 3.3E-10 52.6 4.0 88 63-169 2-91 (94)
5 cd01253 PH_beta_spectrin Beta- 97.9 3.3E-05 7.2E-10 53.8 5.4 98 62-169 1-101 (104)
6 cd01252 PH_cytohesin Cytohesin 97.9 6.3E-06 1.4E-10 60.0 1.8 76 88-169 14-109 (125)
7 cd00821 PH Pleckstrin homology 97.8 1.1E-05 2.3E-10 49.9 2.2 78 87-169 13-93 (96)
8 cd01238 PH_Tec Tec pleckstrin 97.8 1.9E-05 4E-10 57.1 3.8 98 62-169 2-103 (106)
9 cd01233 Unc104 Unc-104 pleckst 97.8 7.9E-06 1.7E-10 58.0 1.8 79 88-169 16-94 (100)
10 cd01235 PH_SETbf Set binding f 97.8 3E-05 6.5E-10 52.9 3.8 92 63-169 2-97 (101)
11 cd01260 PH_CNK Connector enhan 97.5 4.6E-05 9.9E-10 52.5 1.5 92 62-169 2-93 (96)
12 cd01265 PH_PARIS-1 PARIS-1 ple 97.3 0.00022 4.7E-09 50.5 3.3 88 62-169 1-90 (95)
13 cd01251 PH_centaurin_alpha Cen 97.3 0.00019 4.1E-09 51.6 2.5 80 87-169 13-96 (103)
14 cd00900 PH-like Pleckstrin hom 97.2 0.00066 1.4E-08 42.2 4.0 77 88-169 17-96 (99)
15 cd01247 PH_GPBP Goodpasture an 97.1 0.00074 1.6E-08 48.0 3.7 86 62-169 1-88 (91)
16 cd01266 PH_Gab Gab (Grb2-assoc 96.6 0.0013 2.8E-08 47.1 2.0 82 87-169 16-104 (108)
17 cd01263 PH_anillin Anillin Ple 96.4 0.0037 8.1E-08 47.9 3.7 74 62-148 3-79 (122)
18 cd01245 PH_RasGAP_CG5898 RAS G 95.6 0.0091 2E-07 44.2 2.3 77 87-169 13-95 (98)
19 cd01257 PH_IRS Insulin recepto 94.8 0.023 4.9E-07 41.9 2.4 85 61-169 3-98 (101)
20 cd01236 PH_outspread Outspread 94.6 0.037 8E-07 41.2 3.2 79 86-169 20-100 (104)
21 cd01244 PH_RasGAP_CG9209 RAS_G 94.4 0.027 5.8E-07 41.4 2.0 77 88-169 19-95 (98)
22 cd01264 PH_melted Melted pleck 93.8 0.052 1.1E-06 40.6 2.5 81 87-169 16-97 (101)
23 cd01241 PH_Akt Akt pleckstrin 93.1 0.068 1.5E-06 38.3 2.1 80 87-169 14-98 (102)
24 cd01230 PH_EFA6 EFA6 Pleckstri 91.0 0.48 1E-05 36.0 4.7 98 63-169 3-107 (117)
25 PRK09039 hypothetical protein; 90.2 0.12 2.7E-06 44.8 1.0 99 17-125 134-249 (343)
26 cd01254 PH_PLD Phospholipase D 89.0 0.92 2E-05 33.6 4.7 74 87-168 30-117 (121)
27 cd01249 PH_oligophrenin Oligop 88.0 0.97 2.1E-05 34.6 4.3 91 63-169 2-101 (104)
28 cd01219 PH_FGD FGD (faciogenit 84.1 0.75 1.6E-05 32.8 1.9 75 88-169 16-95 (101)
29 cd01258 PH_syntrophin Syntroph 81.9 1.6 3.4E-05 33.5 3.0 56 87-149 16-84 (108)
30 PF15410 PH_9: Pleckstrin homo 77.7 5.6 0.00012 29.2 4.7 98 63-169 3-114 (119)
31 PF04977 DivIC: Septum formati 77.4 3.6 7.9E-05 27.0 3.3 45 22-66 19-68 (80)
32 KOG0521 Putative GTPase activa 72.0 3.8 8.2E-05 40.1 3.3 112 25-164 223-353 (785)
33 PF15188 CCDC-167: Coiled-coil 71.8 4.6 0.0001 30.2 3.0 33 32-64 3-35 (85)
34 PF01166 TSC22: TSC-22/dip/bun 70.8 2.1 4.6E-05 30.7 1.0 30 26-59 13-42 (59)
35 KOG4797 Transcriptional regula 69.5 4.2 9.1E-05 32.7 2.5 25 25-49 65-89 (123)
36 cd01239 PH_PKD Protein kinase 66.7 9.3 0.0002 30.3 3.9 65 89-154 15-79 (117)
37 PF13600 DUF4140: N-terminal d 66.3 5.9 0.00013 28.0 2.5 35 18-52 68-102 (104)
38 PRK06342 transcription elongat 63.5 6.9 0.00015 31.2 2.7 41 22-62 36-85 (160)
39 PF08458 PH_2: Plant pleckstri 62.2 6.6 0.00014 30.6 2.3 37 124-160 54-92 (110)
40 PF15413 PH_11: Pleckstrin hom 60.3 15 0.00032 26.9 3.8 32 63-107 2-34 (112)
41 PF12852 Cupin_6: Cupin 59.6 18 0.00039 27.4 4.2 43 52-104 2-49 (186)
42 PF10267 Tmemb_cc2: Predicted 59.1 12 0.00026 34.3 3.7 41 20-60 269-310 (395)
43 PRK13922 rod shape-determining 57.9 16 0.00034 29.9 3.9 41 25-65 74-117 (276)
44 KOG4571 Activating transcripti 57.4 15 0.00032 33.1 3.9 34 26-59 247-280 (294)
45 PRK00888 ftsB cell division pr 56.7 12 0.00026 27.9 2.8 33 21-53 28-60 (105)
46 PRK04406 hypothetical protein; 51.3 32 0.00069 24.6 4.1 36 29-64 27-62 (75)
47 PF11559 ADIP: Afadin- and alp 51.3 22 0.00047 26.8 3.4 39 21-59 74-112 (151)
48 PHA03230 nuclear protein UL55; 50.9 6.8 0.00015 32.9 0.7 77 92-168 52-155 (180)
49 PF10805 DUF2730: Protein of u 50.1 23 0.0005 26.2 3.4 29 25-53 33-61 (106)
50 PF04537 Herpes_UL55: Herpesvi 49.5 11 0.00023 31.5 1.7 71 92-168 46-150 (169)
51 PF02403 Seryl_tRNA_N: Seryl-t 49.1 17 0.00037 25.9 2.4 33 20-52 67-99 (108)
52 KOG0930 Guanine nucleotide exc 49.0 17 0.00037 33.6 3.0 37 86-122 273-309 (395)
53 PF08848 DUF1818: Domain of un 48.3 5.7 0.00012 31.4 -0.1 65 21-99 28-92 (117)
54 PF08317 Spc7: Spc7 kinetochor 47.6 22 0.00047 30.5 3.3 32 27-58 237-268 (325)
55 PF05529 Bap31: B-cell recepto 47.5 22 0.00047 27.8 3.1 35 21-55 155-189 (192)
56 TIGR02231 conserved hypothetic 46.3 22 0.00049 31.8 3.3 43 16-58 67-109 (525)
57 TIGR01462 greA transcription e 45.8 24 0.00052 27.2 3.0 25 39-63 47-71 (151)
58 PF07321 YscO: Type III secret 45.4 30 0.00066 27.7 3.6 35 24-58 64-98 (152)
59 PRK00888 ftsB cell division pr 43.8 22 0.00048 26.5 2.4 43 17-59 31-73 (105)
60 PF15456 Uds1: Up-regulated Du 43.5 33 0.00071 26.7 3.4 29 23-51 18-46 (124)
61 PF09372 PRANC: PRANC domain; 43.2 14 0.0003 26.1 1.2 38 32-78 41-78 (97)
62 TIGR02209 ftsL_broad cell divi 42.3 28 0.00061 23.6 2.6 32 22-53 26-57 (85)
63 PRK00295 hypothetical protein; 42.3 58 0.0013 22.7 4.2 37 25-61 17-53 (68)
64 PRK11546 zraP zinc resistance 41.7 26 0.00057 28.2 2.7 25 13-37 82-106 (143)
65 PF12958 DUF3847: Protein of u 41.6 36 0.00077 25.4 3.2 33 22-54 3-35 (86)
66 PRK14161 heat shock protein Gr 41.6 26 0.00056 28.6 2.7 35 20-54 19-53 (178)
67 PRK02793 phi X174 lysis protei 41.3 51 0.0011 23.2 3.9 39 26-64 21-59 (72)
68 cd00890 Prefoldin Prefoldin is 40.3 25 0.00055 24.9 2.2 25 29-53 96-120 (129)
69 PF06401 Alpha-2-MRAP_C: Alpha 39.5 40 0.00086 28.9 3.6 36 23-58 125-163 (214)
70 PF03836 RasGAP_C: RasGAP C-te 39.4 9.9 0.00021 29.1 0.0 40 23-62 47-86 (142)
71 TIGR03214 ura-cupin putative a 38.6 92 0.002 26.0 5.6 85 63-150 126-212 (260)
72 PF04977 DivIC: Septum formati 38.5 28 0.00061 22.8 2.1 36 23-58 27-62 (80)
73 PRK14147 heat shock protein Gr 38.1 38 0.00081 27.4 3.1 35 20-54 18-52 (172)
74 PF04521 Viral_P18: ssRNA posi 38.0 28 0.0006 27.9 2.3 39 27-65 72-110 (120)
75 PF08286 Spc24: Spc24 subunit 37.9 8.8 0.00019 28.5 -0.5 28 25-52 18-45 (118)
76 PRK14162 heat shock protein Gr 37.6 35 0.00076 28.4 2.9 39 16-54 35-73 (194)
77 PF10046 BLOC1_2: Biogenesis o 37.5 46 0.00099 24.3 3.2 31 26-56 41-71 (99)
78 PRK02119 hypothetical protein; 37.2 74 0.0016 22.5 4.2 33 29-61 25-57 (73)
79 COG3167 PilO Tfp pilus assembl 36.7 28 0.00061 30.2 2.3 57 16-72 45-125 (211)
80 PRK14158 heat shock protein Gr 36.6 36 0.00079 28.3 2.9 38 16-53 36-73 (194)
81 PF04508 Pox_A_type_inc: Viral 36.6 19 0.00041 21.6 0.9 16 27-42 1-16 (23)
82 PRK14143 heat shock protein Gr 36.5 34 0.00074 29.2 2.8 37 18-54 65-101 (238)
83 PRK05892 nucleoside diphosphat 36.5 40 0.00087 26.7 3.0 24 40-63 53-76 (158)
84 PRK04325 hypothetical protein; 36.0 71 0.0015 22.6 3.9 36 27-62 23-58 (74)
85 PF08317 Spc7: Spc7 kinetochor 35.1 43 0.00092 28.7 3.1 43 16-58 205-247 (325)
86 cd04776 HTH_GnyR Helix-Turn-He 34.9 43 0.00093 24.8 2.8 28 30-57 83-110 (118)
87 PF04380 BMFP: Membrane fusoge 34.9 25 0.00055 25.0 1.5 28 25-52 48-75 (79)
88 cd01237 Unc112 Unc-112 pleckst 34.3 37 0.00081 26.1 2.4 76 88-169 18-99 (106)
89 smart00338 BRLZ basic region l 33.9 35 0.00076 22.6 2.0 28 26-53 32-59 (65)
90 PF10805 DUF2730: Protein of u 33.9 42 0.00091 24.9 2.6 32 26-57 64-95 (106)
91 cd06155 eu_AANH_C_1 A group of 33.6 41 0.00088 23.8 2.4 22 42-63 24-45 (101)
92 PRK14155 heat shock protein Gr 33.5 45 0.00097 28.0 3.0 34 22-55 15-48 (208)
93 PF01920 Prefoldin_2: Prefoldi 33.5 68 0.0015 22.0 3.4 35 26-60 4-38 (106)
94 TIGR01461 greB transcription e 33.5 59 0.0013 25.6 3.5 25 39-63 50-74 (156)
95 TIGR01843 type_I_hlyD type I s 33.2 50 0.0011 27.3 3.2 13 118-130 345-357 (423)
96 TIGR00999 8a0102 Membrane Fusi 33.2 43 0.00092 26.1 2.6 47 24-70 51-103 (265)
97 cd01242 PH_ROK Rok (Rho- assoc 32.9 65 0.0014 25.4 3.6 53 89-146 19-82 (112)
98 PF04728 LPP: Lipoprotein leuc 32.7 45 0.00098 23.5 2.4 34 20-53 17-50 (56)
99 PF00170 bZIP_1: bZIP transcri 32.5 39 0.00085 22.4 2.0 23 26-48 39-61 (64)
100 PF04380 BMFP: Membrane fusoge 32.0 54 0.0012 23.3 2.8 31 19-49 49-79 (79)
101 PF01025 GrpE: GrpE; InterPro 31.8 25 0.00054 26.5 1.1 36 18-53 9-44 (165)
102 cd04779 HTH_MerR-like_sg4 Heli 31.8 65 0.0014 24.8 3.4 39 21-59 75-113 (134)
103 PF09325 Vps5: Vps5 C terminal 31.6 63 0.0014 25.0 3.3 33 27-59 163-195 (236)
104 PF14301 DUF4376: Domain of un 31.0 66 0.0014 22.3 3.0 43 8-52 55-101 (111)
105 KOG4010 Coiled-coil protein TP 30.9 45 0.00097 28.9 2.6 44 18-61 35-82 (208)
106 COG3879 Uncharacterized protei 30.8 59 0.0013 28.5 3.3 31 31-61 54-84 (247)
107 KOG3850 Predicted membrane pro 30.7 59 0.0013 30.9 3.6 42 20-61 317-359 (455)
108 PF11382 DUF3186: Protein of u 30.3 62 0.0013 27.9 3.4 35 25-59 37-71 (308)
109 PF08657 DASH_Spc34: DASH comp 30.3 42 0.0009 28.9 2.3 38 17-54 177-214 (259)
110 PF09726 Macoilin: Transmembra 30.0 34 0.00074 33.2 2.0 33 24-56 422-454 (697)
111 PRK02119 hypothetical protein; 29.6 65 0.0014 22.8 2.8 30 28-57 3-32 (73)
112 KOG1760 Molecular chaperone Pr 29.6 46 0.001 27.1 2.3 28 23-50 91-118 (131)
113 PRK00846 hypothetical protein; 29.4 1.2E+02 0.0026 22.2 4.3 38 27-64 27-64 (77)
114 PF07106 TBPIP: Tat binding pr 29.2 64 0.0014 24.8 3.0 27 26-52 78-104 (169)
115 COG1342 Predicted DNA-binding 29.1 41 0.0009 26.2 1.9 51 11-61 21-74 (99)
116 PRK00736 hypothetical protein; 29.1 1.3E+02 0.0027 21.0 4.2 39 24-62 16-54 (68)
117 PF07862 Nif11: Nitrogen fixat 28.9 55 0.0012 20.6 2.2 22 50-71 26-47 (49)
118 PHA01750 hypothetical protein 28.9 50 0.0011 24.7 2.2 32 23-54 38-69 (75)
119 PRK14144 heat shock protein Gr 28.8 54 0.0012 27.6 2.7 37 18-54 43-79 (199)
120 PF11853 DUF3373: Protein of u 28.7 34 0.00073 32.4 1.7 13 66-78 70-82 (489)
121 PF05308 Mito_fiss_reg: Mitoch 28.4 23 0.00051 30.4 0.5 21 20-40 122-142 (253)
122 PF07047 OPA3: Optic atrophy 3 28.2 21 0.00046 27.4 0.2 20 34-53 112-131 (134)
123 PF13600 DUF4140: N-terminal d 28.2 81 0.0018 22.2 3.2 34 23-56 66-99 (104)
124 COG3167 PilO Tfp pilus assembl 28.1 40 0.00088 29.3 1.9 14 144-157 163-176 (211)
125 PRK00226 greA transcription el 28.1 69 0.0015 24.6 3.0 23 40-62 53-75 (157)
126 PRK14154 heat shock protein Gr 28.0 54 0.0012 27.7 2.6 34 21-54 53-86 (208)
127 PF14019 DUF4235: Protein of u 28.0 28 0.00061 24.7 0.8 20 70-89 22-41 (78)
128 PF14257 DUF4349: Domain of un 27.8 90 0.0019 25.5 3.8 45 25-69 160-204 (262)
129 PF06248 Zw10: Centromere/kine 27.5 65 0.0014 29.5 3.2 46 15-61 71-116 (593)
130 TIGR01242 26Sp45 26S proteasom 27.4 99 0.0022 26.2 4.1 43 25-67 4-46 (364)
131 cd04790 HTH_Cfa-like_unk Helix 27.3 9.8 0.00021 30.0 -1.8 29 32-60 79-107 (172)
132 PF04889 Cwf_Cwc_15: Cwf15/Cwc 26.9 83 0.0018 26.9 3.5 51 23-73 149-205 (244)
133 KOG4593 Mitotic checkpoint pro 26.8 39 0.00085 33.7 1.8 42 15-56 270-312 (716)
134 KOG4001 Axonemal dynein light 26.6 48 0.001 29.4 2.1 20 34-53 235-254 (259)
135 PF07926 TPR_MLP1_2: TPR/MLP1/ 26.1 96 0.0021 23.3 3.4 40 22-61 5-44 (132)
136 PF06156 DUF972: Protein of un 26.1 78 0.0017 24.0 2.9 40 20-59 15-54 (107)
137 PF11819 DUF3338: Domain of un 25.9 1.3E+02 0.0028 24.4 4.3 47 31-81 36-82 (138)
138 cd07596 BAR_SNX The Bin/Amphip 25.6 1E+02 0.0022 23.0 3.5 32 27-58 145-176 (218)
139 PRK13169 DNA replication intia 25.4 90 0.002 24.1 3.2 40 20-59 15-54 (110)
140 PF04201 TPD52: Tumour protein 25.4 66 0.0014 26.7 2.6 21 22-42 24-44 (162)
141 PRK01885 greB transcription el 25.4 83 0.0018 24.8 3.1 24 39-62 52-75 (157)
142 TIGR00219 mreC rod shape-deter 25.3 1.6E+02 0.0034 25.2 4.9 65 25-100 71-140 (283)
143 PRK14127 cell division protein 25.1 50 0.0011 25.5 1.8 37 19-55 29-65 (109)
144 cd01259 PH_Apbb1ip Apbb1ip (Am 25.1 66 0.0014 25.5 2.4 93 62-169 2-104 (114)
145 PF05384 DegS: Sensor protein 25.0 93 0.002 25.2 3.3 39 23-61 23-61 (159)
146 PRK05771 V-type ATP synthase s 24.9 1.1E+02 0.0025 28.4 4.3 60 15-74 210-283 (646)
147 PF08690 GET2: GET complex sub 24.7 83 0.0018 27.7 3.2 21 23-48 1-21 (302)
148 PF04568 IATP: Mitochondrial A 24.5 1E+02 0.0022 23.5 3.3 29 29-57 71-99 (100)
149 PF04111 APG6: Autophagy prote 24.3 79 0.0017 27.4 3.0 30 23-52 53-82 (314)
150 TIGR01834 PHA_synth_III_E poly 24.3 74 0.0016 28.7 2.9 30 25-54 287-316 (320)
151 PF10186 Atg14: UV radiation r 23.6 1.1E+02 0.0023 24.3 3.4 17 25-41 75-91 (302)
152 PRK14159 heat shock protein Gr 23.5 82 0.0018 25.8 2.8 32 23-54 26-57 (176)
153 COG1792 MreC Cell shape-determ 23.3 1.6E+02 0.0036 25.2 4.7 66 25-100 71-140 (284)
154 PF14784 ECIST_Cterm: C-termin 23.2 1E+02 0.0023 24.2 3.2 34 92-125 22-55 (126)
155 PF10517 DM13: Electron transf 22.9 1.8E+02 0.0038 21.0 4.2 39 99-140 37-77 (108)
156 cd01256 PH_dynamin Dynamin ple 22.9 81 0.0018 25.1 2.5 31 92-122 21-51 (110)
157 PF14357 DUF4404: Domain of un 22.8 78 0.0017 22.9 2.3 33 26-58 3-35 (85)
158 KOG3640 Actin binding protein 22.4 42 0.00091 35.0 1.1 18 90-107 1008-1025(1116)
159 cd06150 YjgF_YER057c_UK114_lik 22.4 85 0.0018 22.2 2.4 23 41-63 26-48 (105)
160 PF01920 Prefoldin_2: Prefoldi 22.3 72 0.0016 21.8 2.0 31 27-57 69-99 (106)
161 PRK14151 heat shock protein Gr 22.2 86 0.0019 25.5 2.7 32 23-54 23-54 (176)
162 PRK14146 heat shock protein Gr 22.2 95 0.002 26.2 3.0 33 22-54 56-88 (215)
163 PF04102 SlyX: SlyX; InterPro 22.2 82 0.0018 21.7 2.2 41 21-61 12-52 (69)
164 TIGR03610 RutC pyrimidine util 22.1 83 0.0018 23.5 2.4 24 40-63 46-69 (127)
165 cd04769 HTH_MerR2 Helix-Turn-H 22.1 69 0.0015 23.3 1.9 31 23-53 82-112 (116)
166 PRK14160 heat shock protein Gr 22.0 73 0.0016 27.0 2.3 31 23-53 64-94 (211)
167 PLN02866 phospholipase D 21.8 1.5E+02 0.0033 30.9 4.8 36 88-129 216-251 (1068)
168 PF14662 CCDC155: Coiled-coil 21.8 93 0.002 26.5 2.9 33 22-54 62-94 (193)
169 PF15409 PH_8: Pleckstrin homo 21.6 1.3E+02 0.0028 22.3 3.2 41 64-117 1-43 (89)
170 PF11333 DUF3135: Protein of u 21.5 1.4E+02 0.0029 22.0 3.3 36 26-61 17-58 (83)
171 cd07627 BAR_Vps5p The Bin/Amph 21.4 1.1E+02 0.0024 24.6 3.1 33 27-59 143-175 (216)
172 cd01107 HTH_BmrR Helix-Turn-He 21.2 72 0.0015 23.0 1.8 17 37-53 85-101 (108)
173 PRK14148 heat shock protein Gr 21.2 84 0.0018 26.2 2.4 33 22-54 42-74 (195)
174 PTZ00066 pyruvate kinase; Prov 21.0 72 0.0016 30.2 2.3 38 25-69 234-281 (513)
175 COG1579 Zn-ribbon protein, pos 20.6 1.2E+02 0.0027 26.1 3.4 32 25-56 87-118 (239)
176 cd01224 PH_Collybistin Collybi 20.6 31 0.00068 26.6 -0.1 49 121-169 52-103 (109)
177 PF04698 Rab_eff_C: Rab effect 20.6 70 0.0015 32.0 2.2 44 19-62 593-636 (714)
178 PF10779 XhlA: Haemolysin XhlA 20.5 1.3E+02 0.0029 20.6 3.0 37 19-55 5-41 (71)
179 PF11853 DUF3373: Protein of u 20.5 48 0.001 31.5 1.0 22 21-42 32-53 (489)
180 PRK14145 heat shock protein Gr 20.4 99 0.0021 25.9 2.7 31 23-53 48-78 (196)
181 PRK04406 hypothetical protein; 20.1 1.4E+02 0.0031 21.3 3.2 29 30-58 7-35 (75)
No 1
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.56 E-value=3e-08 Score=63.73 Aligned_cols=93 Identities=27% Similarity=0.395 Sum_probs=76.7
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEeeecceeEeEeeeC---CCCCCCcceeehhhhccCCCCcc-ccCCc
Q 030783 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLST---DLSPQDSTVLSDVVEVASLPSIT-RENGE 137 (171)
Q Consensus 62 lsgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~sT---DLsPqdStllsdIVEvg~lP~~~-rEdge 137 (171)
..|||+.++ .-...|=+||+||.|.+++||-..+ +..|..++-|.++ +|...++.. ....+
T Consensus 3 ~~G~L~~~~--------------~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~ 67 (104)
T PF00169_consen 3 KEGWLLKKS--------------SSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKK 67 (104)
T ss_dssp EEEEEEEEE--------------SSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSS
T ss_pred EEEEEEEEC--------------CCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccC
Confidence 479999999 2345799999999999999999999 7999999999999 887777764 24455
Q ss_pred eEEEEEEEeecceeeeecccceeeeeeeeeee
Q 030783 138 MQYCFYILTRHGLRIECSSISKIQVLVILIYL 169 (171)
Q Consensus 138 ~~yaFyIlTrhGLR~ECSS~skiQVdswLs~l 169 (171)
..++|.|.+..|=.|..+..++-+...|+.+|
T Consensus 68 ~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i 99 (104)
T PF00169_consen 68 RKNCFEITTPNGKSYLFSAESEEERKRWIQAI 99 (104)
T ss_dssp SSSEEEEEETTSEEEEEEESSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHH
Confidence 68899999999977777777778888887664
No 2
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.09 E-value=5.3e-06 Score=51.54 Aligned_cols=92 Identities=23% Similarity=0.324 Sum_probs=66.9
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEeeecceeEeEeeeCC---CCCCCcceeehhhhccCCCCccccCCce
Q 030783 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTD---LSPQDSTVLSDVVEVASLPSITRENGEM 138 (171)
Q Consensus 62 lsgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~sTD---LsPqdStllsdIVEvg~lP~~~rEdge~ 138 (171)
..|||+.+++= .-..|-+||++|.+.|+.||-...+ .+|...+.+.++ .|...++... +..
T Consensus 3 ~~G~l~~~~~~-------------~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~--~~~ 66 (102)
T smart00233 3 KEGWLYKKSGG-------------KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS--AKK 66 (102)
T ss_pred eeEEEEEeCCC-------------ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc--CCC
Confidence 57899887541 2345999999999999999998877 788899999887 7776665433 345
Q ss_pred EEEEEEEeecceeeeecccceeeeeeeeeee
Q 030783 139 QYCFYILTRHGLRIECSSISKIQVLVILIYL 169 (171)
Q Consensus 139 ~yaFyIlTrhGLR~ECSS~skiQVdswLs~l 169 (171)
.++|.|.+..+-.+..+..+......|+.+|
T Consensus 67 ~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i 97 (102)
T smart00233 67 PHCFEIKTADRRSYLLQAESEEEREEWVDAL 97 (102)
T ss_pred ceEEEEEecCCceEEEEcCCHHHHHHHHHHH
Confidence 6899999988844444444445556666544
No 3
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.02 E-value=4.6e-06 Score=54.82 Aligned_cols=86 Identities=22% Similarity=0.363 Sum_probs=64.8
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEeeecceeEeEeeeCCC--CCCCcceeehhhhccCCCCccccCCceE
Q 030783 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDL--SPQDSTVLSDVVEVASLPSITRENGEMQ 139 (171)
Q Consensus 62 lsgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~sTDL--sPqdStllsdIVEvg~lP~~~rEdge~~ 139 (171)
++|||+-++.- ...|-.||+||+|.+++||---.+- .|.+++.+.+... .++.+..
T Consensus 1 ~~G~L~k~~~~--------------~~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~--------~~~~~~~ 58 (91)
T cd01246 1 VEGWLLKWTNY--------------LKGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVI--------SEDDSDD 58 (91)
T ss_pred CeEEEEEeccc--------------CCCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEE--------EECCCCC
Confidence 36888776531 2579999999999999999998887 8999988887531 1112226
Q ss_pred EEEEEEeecceeeeecccceeeeeeeeeee
Q 030783 140 YCFYILTRHGLRIECSSISKIQVLVILIYL 169 (171)
Q Consensus 140 yaFyIlTrhGLR~ECSS~skiQVdswLs~l 169 (171)
++|.|.|.+|=.|.....+.-....|+.+|
T Consensus 59 ~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al 88 (91)
T cd01246 59 KCFTIDTGGDKTLHLRANSEEERQRWVDAL 88 (91)
T ss_pred cEEEEEcCCCCEEEEECCCHHHHHHHHHHH
Confidence 899999998766666666666788888775
No 4
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.92 E-value=1.5e-05 Score=52.63 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=60.4
Q ss_pred ceeEEEeeecccCCCCCCCCCCCCccccceeeEeeecceeEeEeeeCC--CCCCCcceeehhhhccCCCCccccCCceEE
Q 030783 63 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTD--LSPQDSTVLSDVVEVASLPSITRENGEMQY 140 (171)
Q Consensus 63 sgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~sTD--LsPqdStllsdIVEvg~lP~~~rEdge~~y 140 (171)
+|||+-|+.-. ...|-+||+||.+.+++||.-..+ ..|..++-+.+. -|...| +.++..+
T Consensus 2 ~G~L~kk~~~~-------------~~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~-~v~~~~----~~~~~~~ 63 (94)
T cd01250 2 QGYLYKRSSKS-------------NKEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRC-TVRHNG----KQPDRRF 63 (94)
T ss_pred cceEEEECCCc-------------CCCceEEEEEEeCCeEEEEcCCcccccccceEEeccce-EEecCc----cccCCce
Confidence 58888876211 467999999999999999987776 778878777653 133332 2224578
Q ss_pred EEEEEeecceeeeecccceeeeeeeeeee
Q 030783 141 CFYILTRHGLRIECSSISKIQVLVILIYL 169 (171)
Q Consensus 141 aFyIlTrhGLR~ECSS~skiQVdswLs~l 169 (171)
+|.|.|...--+-|+ .+.-....|+.||
T Consensus 64 ~f~i~~~~~~~~f~a-~s~~~~~~Wi~al 91 (94)
T cd01250 64 CFEVISPTKTWHFQA-DSEEERDDWISAI 91 (94)
T ss_pred EEEEEcCCcEEEEEC-CCHHHHHHHHHHH
Confidence 999998774434444 4444667787765
No 5
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.88 E-value=3.3e-05 Score=53.84 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=62.3
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEeeecceeEeEeeeCCC-CCCCcceeehh--hhccCCCCccccCCce
Q 030783 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDL-SPQDSTVLSDV--VEVASLPSITRENGEM 138 (171)
Q Consensus 62 lsgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~sTDL-sPqdStllsdI--VEvg~lP~~~rEdge~ 138 (171)
+.|||+.+..|.+. |--+. .-.|-.||+||+|..++||--..+. .+.+++.--++ +.|...++. ..-
T Consensus 1 ~~g~l~rk~~~~~~-g~~~~-----~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~----~k~ 70 (104)
T cd01253 1 MEGSLERKHELESG-GKKAS-----NRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDY----TKK 70 (104)
T ss_pred CCceEeEEEEeecC-CcccC-----CCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCc----ccC
Confidence 47999999999987 44433 6789999999999999999754332 11122111111 222222222 133
Q ss_pred EEEEEEEeecceeeeecccceeeeeeeeeee
Q 030783 139 QYCFYILTRHGLRIECSSISKIQVLVILIYL 169 (171)
Q Consensus 139 ~yaFyIlTrhGLR~ECSS~skiQVdswLs~l 169 (171)
.++|.|.+..|-.|.=+..+.-.+..|+.+|
T Consensus 71 ~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL 101 (104)
T cd01253 71 KHVFRLRLPDGAEFLFQAPDEEEMSSWVRAL 101 (104)
T ss_pred ceEEEEEecCCCEEEEECCCHHHHHHHHHHH
Confidence 5899999888855544444455778888765
No 6
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.87 E-value=6.3e-06 Score=60.02 Aligned_cols=76 Identities=16% Similarity=0.426 Sum_probs=58.6
Q ss_pred cccceeeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCccccCCceEEEEEEEeecc------------------
Q 030783 88 DDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHG------------------ 149 (171)
Q Consensus 88 DDWlpRFVVl~G~cif~yL~sTDLsPqdStllsdIVEvg~lP~~~rEdge~~yaFyIlTrhG------------------ 149 (171)
..|=.||+||++.|++||--.+|-.|.+++.|.++. |...+. ...+++|.|.+..+
T Consensus 14 ~~WkkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~~-v~~~~~-----~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~ 87 (125)
T cd01252 14 KTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENVS-IREVED-----PSKPFCFELFSPSDKQQIKACKTESDGRVVEG 87 (125)
T ss_pred CCeEeEEEEEECCEEEEEcCCCCCCceEEEECCCcE-EEEccc-----CCCCeeEEEECCcccccccccccccccccccc
Confidence 679999999999999999888999999999999743 444432 23578998887665
Q ss_pred --eeeeecccceeeeeeeeeee
Q 030783 150 --LRIECSSISKIQVLVILIYL 169 (171)
Q Consensus 150 --LR~ECSS~skiQVdswLs~l 169 (171)
-.|.++..+.-+...|+.+|
T Consensus 88 ~~~~~~~~A~s~~e~~~Wi~al 109 (125)
T cd01252 88 NHSVYRISAANDEEMDEWIKSI 109 (125)
T ss_pred CceEEEEECCCHHHHHHHHHHH
Confidence 34556666666788888765
No 7
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.85 E-value=1.1e-05 Score=49.86 Aligned_cols=78 Identities=24% Similarity=0.337 Sum_probs=60.4
Q ss_pred ccccceeeEeeecceeEeEeeeCC---CCCCCcceeehhhhccCCCCccccCCceEEEEEEEeecceeeeecccceeeee
Q 030783 87 VDDWLPRFIVLHGSCIFFYLLSTD---LSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVL 163 (171)
Q Consensus 87 VDDWlpRFVVl~G~cif~yL~sTD---LsPqdStllsdIVEvg~lP~~~rEdge~~yaFyIlTrhGLR~ECSS~skiQVd 163 (171)
...|-+|+++|.+.++++|-...+ .+|+..+.+.+ ++|...+.-. ...++|.|.+.++-.+.-...++...+
T Consensus 13 ~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~----~~~~~f~i~~~~~~~~~~~~~s~~~~~ 87 (96)
T cd00821 13 RKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDS----GRKNCFEIRTPDGRSYLLQAESEEERE 87 (96)
T ss_pred hCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcC----CCCcEEEEecCCCcEEEEEeCCHHHHH
Confidence 678999999999999999999988 79999999998 7777665443 356899999887544444444456677
Q ss_pred eeeeee
Q 030783 164 VILIYL 169 (171)
Q Consensus 164 swLs~l 169 (171)
.|+.+|
T Consensus 88 ~W~~~l 93 (96)
T cd00821 88 EWIEAL 93 (96)
T ss_pred HHHHHH
Confidence 777654
No 8
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=97.85 E-value=1.9e-05 Score=57.06 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=67.2
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEeeecceeEeEeeeCC--CCCCCcceeehhhhccCCCCccc--cCCc
Q 030783 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTD--LSPQDSTVLSDVVEVASLPSITR--ENGE 137 (171)
Q Consensus 62 lsgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~sTD--LsPqdStllsdIVEvg~lP~~~r--Edge 137 (171)
.+|||+-|..=.-.. -...|=.|++||++.|++||=-..| -+|-+++-|+++..|-..+.-.. -..+
T Consensus 2 k~g~l~Kr~~~~~~~---------~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~ 72 (106)
T cd01238 2 LESILVKRSQQKKKT---------SPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPER 72 (106)
T ss_pred cceeeeeeccCCCCC---------CCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccc
Confidence 468998885322222 2347999999999999999977766 48999999999754433332221 1123
Q ss_pred eEEEEEEEeecceeeeecccceeeeeeeeeee
Q 030783 138 MQYCFYILTRHGLRIECSSISKIQVLVILIYL 169 (171)
Q Consensus 138 ~~yaFyIlTrhGLR~ECSS~skiQVdswLs~l 169 (171)
..|+|=|.|... .|.+...+.-+-+.|+.+|
T Consensus 73 ~~~~F~i~t~~r-~~yl~A~s~~er~~WI~ai 103 (106)
T cd01238 73 FKYPFQVVHDEG-TLYVFAPTEELRKRWIKAL 103 (106)
T ss_pred cCccEEEEeCCC-eEEEEcCCHHHHHHHHHHH
Confidence 468998988543 4556666777888888765
No 9
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=97.84 E-value=7.9e-06 Score=57.98 Aligned_cols=79 Identities=19% Similarity=0.224 Sum_probs=57.4
Q ss_pred cccceeeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCccccCCceEEEEEEEeecceeeeecccceeeeeeeee
Q 030783 88 DDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVLVILI 167 (171)
Q Consensus 88 DDWlpRFVVl~G~cif~yL~sTDLsPqdStllsdIVEvg~lP~~~rEdge~~yaFyIlTrhGLR~ECSS~skiQVdswLs 167 (171)
--|-.||+||++.|++||-..+|-.|.+.+-|.++ .|-..|.-.+-.| -.++|.|.|.+-- |..+..|+-+...|+.
T Consensus 16 k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~-~v~~~~~~~~~~~-~~~~F~I~t~~rt-~~~~A~s~~e~~~Wi~ 92 (100)
T cd01233 16 SGWTRRFVVVRRPYLHIYRSDKDPVERGVINLSTA-RVEHSEDQAAMVK-GPNTFAVCTKHRG-YLFQALSDKEMIDWLY 92 (100)
T ss_pred CCcEEEEEEEECCEEEEEccCCCccEeeEEEeccc-EEEEccchhhhcC-CCcEEEEECCCCE-EEEEcCCHHHHHHHHH
Confidence 57999999999999999999999999999999965 3333332211111 2579999876544 5555566668888877
Q ss_pred ee
Q 030783 168 YL 169 (171)
Q Consensus 168 ~l 169 (171)
+|
T Consensus 93 ai 94 (100)
T cd01233 93 AL 94 (100)
T ss_pred Hh
Confidence 65
No 10
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=97.78 E-value=3e-05 Score=52.95 Aligned_cols=92 Identities=20% Similarity=0.235 Sum_probs=58.6
Q ss_pred ceeEEEeeecccCCCCCCCCCCCCccccceeeEeee--cceeEeEeeeCCCCCCCcceeehhhhccC-CCCcc-ccCCce
Q 030783 63 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLH--GSCIFFYLLSTDLSPQDSTVLSDVVEVAS-LPSIT-RENGEM 138 (171)
Q Consensus 63 sgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~--G~cif~yL~sTDLsPqdStllsdIVEvg~-lP~~~-rEdge~ 138 (171)
+|||+-+.. .+..|-+||+||. +.+++||=-.+|-.|.+++-|+++..|-. .|+.. +.+...
T Consensus 2 ~G~L~K~g~--------------~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~ 67 (101)
T cd01235 2 EGYLYKRGA--------------LLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPKHTSR 67 (101)
T ss_pred eEEEEEcCC--------------CCCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCCCCCCC
Confidence 588887652 2568999999999 45999998889999999999999866654 23322 222233
Q ss_pred EEEEEEEeecceeeeecccceeeeeeeeeee
Q 030783 139 QYCFYILTRHGLRIECSSISKIQVLVILIYL 169 (171)
Q Consensus 139 ~yaFyIlTrhGLR~ECSS~skiQVdswLs~l 169 (171)
.+.|-|.| ++=.|.=...++-..+.|+.+|
T Consensus 68 ~~~f~i~t-~~r~~~~~a~s~~e~~~Wi~ai 97 (101)
T cd01235 68 KGFFDLKT-SKRTYNFLAENINEAQRWKEKI 97 (101)
T ss_pred ceEEEEEe-CCceEEEECCCHHHHHHHHHHH
Confidence 44555444 4433332233333555676654
No 11
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=97.50 E-value=4.6e-05 Score=52.45 Aligned_cols=92 Identities=21% Similarity=0.341 Sum_probs=62.3
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCccccCCceEEE
Q 030783 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYC 141 (171)
Q Consensus 62 lsgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~sTDLsPqdStllsdIVEvg~lP~~~rEdge~~ya 141 (171)
.+|||+-++- .|. .-+.-|-.||+||.|.+++||---+|-.|.+.+.|... .|-.. .+ ....++
T Consensus 2 ~~GwL~kk~~----~~g------~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~-~v~~~----~~-~~k~~~ 65 (96)
T cd01260 2 CDGWLWKRKK----PGG------FMGQKWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGF-TIESA----KE-VKKKYA 65 (96)
T ss_pred ceeEEEEecC----CCC------ccccCceeEEEEEECCEEEEECCCCCCccceEEEccCC-EEEEc----hh-cCCceE
Confidence 4689988861 111 13567999999999999999999899999999888863 23222 12 235789
Q ss_pred EEEEeecceeeeecccceeeeeeeeeee
Q 030783 142 FYILTRHGLRIECSSISKIQVLVILIYL 169 (171)
Q Consensus 142 FyIlTrhGLR~ECSS~skiQVdswLs~l 169 (171)
|-|.|.+.=.|.=+..++-.+..|+.+|
T Consensus 66 F~I~~~~~~~~~f~a~s~~e~~~Wi~ai 93 (96)
T cd01260 66 FKVCHPVYKSFYFAAETLDDLSQWVNHL 93 (96)
T ss_pred EEECCCCCcEEEEEeCCHHHHHHHHHHH
Confidence 9998776333333334455666777665
No 12
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.33 E-value=0.00022 Score=50.52 Aligned_cols=88 Identities=24% Similarity=0.243 Sum_probs=60.2
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEeeec--ceeEeEeeeCCCCCCCcceeehhhhccCCCCccccCCceE
Q 030783 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHG--SCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQ 139 (171)
Q Consensus 62 lsgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G--~cif~yL~sTDLsPqdStllsdIVEvg~lP~~~rEdge~~ 139 (171)
|+|||+-+. |.- -+--|=.|++||.+ .-++||=-..|-.|.+++-|.+++.+-. . ++..
T Consensus 1 l~GyL~K~g------~~~------~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~-----~--~~~~ 61 (95)
T cd01265 1 LCGYLHKIE------GKG------PLRGRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYD-----P--REEK 61 (95)
T ss_pred CcccEEEec------CCC------CCcCceeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcC-----C--CCCC
Confidence 679998764 111 16679999999974 4577776668999999999998654421 1 1125
Q ss_pred EEEEEEeecceeeeecccceeeeeeeeeee
Q 030783 140 YCFYILTRHGLRIECSSISKIQVLVILIYL 169 (171)
Q Consensus 140 yaFyIlTrhGLR~ECSS~skiQVdswLs~l 169 (171)
+.|-|.|..- -|.-...|+-+-+.|+.+|
T Consensus 62 ~~F~i~t~~r-~y~l~A~s~~e~~~Wi~al 90 (95)
T cd01265 62 GRFEIHSNNE-VIALKASSDKQMNYWLQAL 90 (95)
T ss_pred CEEEEEcCCc-EEEEECCCHHHHHHHHHHH
Confidence 7899988643 3655566666667776654
No 13
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=97.27 E-value=0.00019 Score=51.59 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=59.9
Q ss_pred ccccceeeEeeecceeEeEeeeCCCCCCCcceeehhh---hcc-CCCCccccCCceEEEEEEEeecceeeeecccceeee
Q 030783 87 VDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVV---EVA-SLPSITRENGEMQYCFYILTRHGLRIECSSISKIQV 162 (171)
Q Consensus 87 VDDWlpRFVVl~G~cif~yL~sTDLsPqdStllsdIV---Evg-~lP~~~rEdge~~yaFyIlTrhGLR~ECSS~skiQV 162 (171)
+.-|=-||.||+|.+++||=-..|-.|.+++.|..+. +|. .+|.-. ++...|+|-|.|- +=.|..+-.++-+.
T Consensus 13 ~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~--~~~~~~~F~i~t~-~Rty~l~a~s~~e~ 89 (103)
T cd01251 13 TEGFKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGT--QGNHWYGVTLVTP-ERKFLFACETEQDR 89 (103)
T ss_pred CCCceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccc--cccccceEEEEeC-CeEEEEECCCHHHH
Confidence 3569999999999999999777899999999998654 231 123211 3444579998875 77888888888888
Q ss_pred eeeeeee
Q 030783 163 LVILIYL 169 (171)
Q Consensus 163 dswLs~l 169 (171)
+.|+.+|
T Consensus 90 ~~Wi~ai 96 (103)
T cd01251 90 REWIAAF 96 (103)
T ss_pred HHHHHHH
Confidence 8888765
No 14
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=97.18 E-value=0.00066 Score=42.21 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=54.5
Q ss_pred cccceeeEeeecceeEeEeeeCCCCCC-CcceeehhhhccCCCCccccCCceEEEEEEEeec--ceeeeecccceeeeee
Q 030783 88 DDWLPRFIVLHGSCIFFYLLSTDLSPQ-DSTVLSDVVEVASLPSITRENGEMQYCFYILTRH--GLRIECSSISKIQVLV 164 (171)
Q Consensus 88 DDWlpRFVVl~G~cif~yL~sTDLsPq-dStllsdIVEvg~lP~~~rEdge~~yaFyIlTrh--GLR~ECSS~skiQVds 164 (171)
..|-+|+++|.+.++.+|-...+-.+. .+..+.++. |...+.-. +..++|-|.+.. +-.+..+..++-....
T Consensus 17 ~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~----~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~ 91 (99)
T cd00900 17 KRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGS----DDPNCFAIVTKDRGRRVFVFQADSEEEAQE 91 (99)
T ss_pred cCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE-EEECCCCC----CCCceEEEECCCCCcEEEEEEcCCHHHHHH
Confidence 579999999999999999988887776 466666655 65554322 356899999884 4455544445556667
Q ss_pred eeeee
Q 030783 165 ILIYL 169 (171)
Q Consensus 165 wLs~l 169 (171)
|+.+|
T Consensus 92 W~~al 96 (99)
T cd00900 92 WVEAL 96 (99)
T ss_pred HHHHH
Confidence 77665
No 15
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=97.06 E-value=0.00074 Score=47.98 Aligned_cols=86 Identities=17% Similarity=0.237 Sum_probs=58.5
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEeeecceeEeEeeeCC--CCCCCcceeehhhhccCCCCccccCCceE
Q 030783 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTD--LSPQDSTVLSDVVEVASLPSITRENGEMQ 139 (171)
Q Consensus 62 lsgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~sTD--LsPqdStllsdIVEvg~lP~~~rEdge~~ 139 (171)
++|||+-++.. +.-|=+||.||++.+++||---.| ..|.+++-|+..+-+.. +.+ .
T Consensus 1 ~~G~L~K~~~~--------------~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~------~~~--~ 58 (91)
T cd01247 1 TNGVLSKWTNY--------------INGWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAH------EFD--E 58 (91)
T ss_pred CceEEEEeccc--------------cCCCceEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEcC------CCC--C
Confidence 47888877642 356999999999999999988666 45899999987542211 222 4
Q ss_pred EEEEEEeecceeeeecccceeeeeeeeeee
Q 030783 140 YCFYILTRHGLRIECSSISKIQVLVILIYL 169 (171)
Q Consensus 140 yaFyIlTrhGLR~ECSS~skiQVdswLs~l 169 (171)
..|-|.+..+=.|.=...++-+.+.|+.||
T Consensus 59 ~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al 88 (91)
T cd01247 59 NRFDISVNENVVWYLRAENSQSRLLWMDSV 88 (91)
T ss_pred CEEEEEeCCCeEEEEEeCCHHHHHHHHHHH
Confidence 678887655455555555555666666554
No 16
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=96.60 E-value=0.0013 Score=47.11 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=56.5
Q ss_pred ccccceeeEeeecce-------eEeEeeeCCCCCCCcceeehhhhccCCCCccccCCceEEEEEEEeecceeeeecccce
Q 030783 87 VDDWLPRFIVLHGSC-------IFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISK 159 (171)
Q Consensus 87 VDDWlpRFVVl~G~c-------if~yL~sTDLsPqdStllsdIVEvg~lP~~~rEdge~~yaFyIlTrhGLR~ECSS~sk 159 (171)
...|=.||.||++.. ++||=-.+|-.|.+++.|.++.+|..=+..+..+....|.|-|.|-+= .|.-...++
T Consensus 16 ~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~r-~y~l~A~s~ 94 (108)
T cd01266 16 RTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIVR-DLYLVAKNE 94 (108)
T ss_pred ccCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccccccCcccceEEEEEeCCc-cEEEEECCH
Confidence 468999999999865 588877788999999999998776421112222223457888886432 455555566
Q ss_pred eeeeeeeeee
Q 030783 160 IQVLVILIYL 169 (171)
Q Consensus 160 iQVdswLs~l 169 (171)
-..+.|+.+|
T Consensus 95 ee~~~Wi~~I 104 (108)
T cd01266 95 EEMTLWVNCI 104 (108)
T ss_pred HHHHHHHHHH
Confidence 6777787665
No 17
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.43 E-value=0.0037 Score=47.90 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=49.9
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEeeecceeEeEeeeCC---CCCCCcceeehhhhccCCCCccccCCce
Q 030783 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTD---LSPQDSTVLSDVVEVASLPSITRENGEM 138 (171)
Q Consensus 62 lsgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~sTD---LsPqdStllsdIVEvg~lP~~~rEdge~ 138 (171)
-+|||.+-- |-..+..|=+||.||+|.||+||-.-.| -.|-+++-|.+..-.-.-+ -.|+.---
T Consensus 3 ~~GfL~~~q------------~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~-~~r~~c~R 69 (122)
T cd01263 3 YHGFLTMFE------------DTSGFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGAS-AVRDICAR 69 (122)
T ss_pred cceeEEEEe------------ccCCCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCccccccc-CChhhcCC
Confidence 368888743 1126689999999999999999987777 5688888887754422211 12333333
Q ss_pred EEEEEEEeec
Q 030783 139 QYCFYILTRH 148 (171)
Q Consensus 139 ~yaFyIlTrh 148 (171)
.++|.|-+.|
T Consensus 70 p~tF~i~~~~ 79 (122)
T cd01263 70 PNTFHLDVWR 79 (122)
T ss_pred CCeEEEEEec
Confidence 6788885443
No 18
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.56 E-value=0.0091 Score=44.21 Aligned_cols=77 Identities=19% Similarity=0.153 Sum_probs=57.9
Q ss_pred ccccceeeEeeec----ceeEeEeeeCCCCCCCcceeehhhhccCCCCccccCCceEEEEEEEeecc--eeeeeccccee
Q 030783 87 VDDWLPRFIVLHG----SCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHG--LRIECSSISKI 160 (171)
Q Consensus 87 VDDWlpRFVVl~G----~cif~yL~sTDLsPqdStllsdIVEvg~lP~~~rEdge~~yaFyIlTrhG--LR~ECSS~ski 160 (171)
+.-|=-|++||+| +|++||=-.+|-.|=|.+.|.++ -|-++.. .--| -.|||=|.+.++ .-|-|.+. -
T Consensus 13 ~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~-~V~~v~d--s~~~-r~~cFel~~~~~~~~y~~~a~~--~ 86 (98)
T cd01245 13 TKLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDA-YLYPVHD--SLFG-RPNCFQIVERALPTVYYSCRSS--E 86 (98)
T ss_pred ccccceeEEEEecCCCCceEEEEcCCCCCCccceeecccc-EEEEccc--cccC-CCeEEEEecCCCCeEEEEeCCH--H
Confidence 5678899999999 99999999999999998888877 4443321 1112 259999998877 66778877 6
Q ss_pred eeeeeeeee
Q 030783 161 QVLVILIYL 169 (171)
Q Consensus 161 QVdswLs~l 169 (171)
+-|.|+.+|
T Consensus 87 er~~Wi~~l 95 (98)
T cd01245 87 ERDKWIESL 95 (98)
T ss_pred HHHHHHHHH
Confidence 677776543
No 19
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=94.81 E-value=0.023 Score=41.94 Aligned_cols=85 Identities=18% Similarity=0.227 Sum_probs=58.5
Q ss_pred hcceeEEEeeecccCCCCCCCCCCCCccccceeeEeeecc------eeEeEeeeCC-----CCCCCcceeehhhhccCCC
Q 030783 61 RLSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGS------CIFFYLLSTD-----LSPQDSTVLSDVVEVASLP 129 (171)
Q Consensus 61 rlsgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~------cif~yL~sTD-----LsPqdStllsdIVEvg~lP 129 (171)
+.+|||... -.|=-||.||++. =|+||--... -.|.++|-|.++..|-..|
T Consensus 3 ~k~GyL~K~------------------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~ 64 (101)
T cd01257 3 RKSGYLRKQ------------------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRA 64 (101)
T ss_pred cEEEEEeEe------------------cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeecc
Confidence 568999885 3566699999977 3777755443 6799999999999887654
Q ss_pred CccccCCceEEEEEEEeecceeeeecccceeeeeeeeeee
Q 030783 130 SITRENGEMQYCFYILTRHGLRIECSSISKIQVLVILIYL 169 (171)
Q Consensus 130 ~~~rEdge~~yaFyIlTrhGLR~ECSS~skiQVdswLs~l 169 (171)
|..-+|+|=|.|... .|.=...++-.-+.|+.+|
T Consensus 65 -----d~k~~~~f~i~t~dr-~f~l~aese~E~~~Wi~~i 98 (101)
T cd01257 65 -----DAKHRHLIALYTRDE-YFAVAAENEAEQDSWYQAL 98 (101)
T ss_pred -----ccccCeEEEEEeCCc-eEEEEeCCHHHHHHHHHHH
Confidence 333468999998664 3333333444555666554
No 20
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.63 E-value=0.037 Score=41.19 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=51.2
Q ss_pred CccccceeeEeee-cceeEeEeee-CCCCCCCcceeehhhhccCCCCccccCCceEEEEEEEeecceeeeecccceeeee
Q 030783 86 DVDDWLPRFIVLH-GSCIFFYLLS-TDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVL 163 (171)
Q Consensus 86 dVDDWlpRFVVl~-G~cif~yL~s-TDLsPqdStllsdIVEvg~lP~~~rEdge~~yaFyIlTrhGLR~ECSS~skiQVd 163 (171)
-+..|=.|+.||. |.-++||--. .|-.|++++-|++..+|-.-... ....++|-|.|.--- |.=+--++-..+
T Consensus 20 ~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~----~~~~~~f~I~tp~R~-f~l~Aete~E~~ 94 (104)
T cd01236 20 RSKRWQRRWFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVVDAEAR----TGQKFSICILTPDKE-HFIKAETKEEIS 94 (104)
T ss_pred eeccccceEEEEeCCCEEEEeeCCCCCcccceEEEccceEEEeecccc----cCCccEEEEECCCce-EEEEeCCHHHHH
Confidence 3789999999996 5677776654 47789999999988876422111 112588988876432 222333444556
Q ss_pred eeeeee
Q 030783 164 VILIYL 169 (171)
Q Consensus 164 swLs~l 169 (171)
.|+.+|
T Consensus 95 ~Wi~~l 100 (104)
T cd01236 95 WWLNML 100 (104)
T ss_pred HHHHHH
Confidence 666654
No 21
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.43 E-value=0.027 Score=41.37 Aligned_cols=77 Identities=9% Similarity=0.028 Sum_probs=55.9
Q ss_pred cccceeeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCccccCCceEEEEEEEeecceeeeecccceeeeeeeee
Q 030783 88 DDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVLVILI 167 (171)
Q Consensus 88 DDWlpRFVVl~G~cif~yL~sTDLsPqdStllsdIVEvg~lP~~~rEdge~~yaFyIlTrhGLR~ECSS~skiQVdswLs 167 (171)
..|=-|++||.+..++||= +-.-.|-+++-|++|.=|-.+.+-... ..|+|=|.|--+ -|.+...++.+-+.|+.
T Consensus 19 ~n~KkRwF~Lt~~~L~Y~k-~~~~~~~g~I~L~~i~~ve~v~~~~~~---~~~~fqivt~~r-~~yi~a~s~~E~~~Wi~ 93 (98)
T cd01244 19 LHFKKRYFQLTTTHLSWAK-DVQCKKSALIKLAAIKGTEPLSDKSFV---NVDIITIVCEDD-TMQLQFEAPVEATDWLN 93 (98)
T ss_pred cCCceeEEEECCCEEEEEC-CCCCceeeeEEccceEEEEEcCCcccC---CCceEEEEeCCC-eEEEECCCHHHHHHHHH
Confidence 5899999999999999995 334578889999998765444432111 148999988644 46666666777888887
Q ss_pred ee
Q 030783 168 YL 169 (171)
Q Consensus 168 ~l 169 (171)
+|
T Consensus 94 al 95 (98)
T cd01244 94 AL 95 (98)
T ss_pred HH
Confidence 65
No 22
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.78 E-value=0.052 Score=40.57 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=54.8
Q ss_pred ccccceeeEeeecceeEeEeeeCCCCCC-CcceeehhhhccCCCCccccCCceEEEEEEEeecceeeeecccceeeeeee
Q 030783 87 VDDWLPRFIVLHGSCIFFYLLSTDLSPQ-DSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVLVI 165 (171)
Q Consensus 87 VDDWlpRFVVl~G~cif~yL~sTDLsPq-dStllsdIVEvg~lP~~~rEdge~~yaFyIlTrhGLR~ECSS~skiQVdsw 165 (171)
+-.|=-|+.||+|..|+||=...+-+|- +++.|+++..|-....-.+. -..++||=|.|..=--|- +..++-+-+.|
T Consensus 16 ~K~WkrRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~-~~~~~~Fei~tp~rt~~l-~A~se~e~e~W 93 (101)
T cd01264 16 IKRWKTRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRD-RSLPKAFEIFTADKTYIL-KAKDEKNAEEW 93 (101)
T ss_pred eecceeEEEEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccc-cccCcEEEEEcCCceEEE-EeCCHHHHHHH
Confidence 4678899999999999999888777787 89999999876533211110 122599999887633333 33445555666
Q ss_pred eeee
Q 030783 166 LIYL 169 (171)
Q Consensus 166 Ls~l 169 (171)
+.+|
T Consensus 94 I~~i 97 (101)
T cd01264 94 LQCL 97 (101)
T ss_pred HHHH
Confidence 6554
No 23
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.14 E-value=0.068 Score=38.26 Aligned_cols=80 Identities=14% Similarity=0.080 Sum_probs=42.3
Q ss_pred ccccceeeEeee-cceeEeEeeeCCCCCCCcceeehhhhccCCCCccccCCceEEEEEEE----eecceeeeecccceee
Q 030783 87 VDDWLPRFIVLH-GSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYIL----TRHGLRIECSSISKIQ 161 (171)
Q Consensus 87 VDDWlpRFVVl~-G~cif~yL~sTDLsPqdStllsdIVEvg~lP~~~rEdge~~yaFyIl----TrhGLR~ECSS~skiQ 161 (171)
+.-|=+|++||+ +.+++||---++-.+++.+.|..+.=-+..+ ...+....++|-|. |..-=|+-|. .+.-.
T Consensus 14 ~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~--~~~~~~~~~~F~i~~~~~~~~~~r~f~a-~s~ee 90 (102)
T cd01241 14 IKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQL--MKTERPRPNTFIIRCLQWTTVIERTFHV-ESPEE 90 (102)
T ss_pred CCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeee--eeccCCCcceEEEEeccCCcccCEEEEe-CCHHH
Confidence 678999999999 8888888754432333444444432100000 01123345888886 2111133332 33446
Q ss_pred eeeeeeee
Q 030783 162 VLVILIYL 169 (171)
Q Consensus 162 VdswLs~l 169 (171)
.+.|+.||
T Consensus 91 ~~eWi~ai 98 (102)
T cd01241 91 REEWIHAI 98 (102)
T ss_pred HHHHHHHH
Confidence 67777654
No 24
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.03 E-value=0.48 Score=35.95 Aligned_cols=98 Identities=11% Similarity=0.116 Sum_probs=59.0
Q ss_pred ceeEEEeeecccCCCCCCCCCCCCccccceeeEeeecceeEeEeeeCCC-------CCCCcceeehhhhccCCCCccccC
Q 030783 63 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDL-------SPQDSTVLSDVVEVASLPSITREN 135 (171)
Q Consensus 63 sgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~sTDL-------sPqdStllsdIVEvg~lP~~~rEd 135 (171)
.|||+-+-.|....-..|+ .-.-|-++|+||+|..++||---..- .+..++-|..- +-+...+.
T Consensus 3 ~g~l~RK~~~~~~~kk~~~----~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a-----~~~ia~dy 73 (117)
T cd01230 3 HGALMRKVHADPDCRKTPF----GKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHA-----LATRASDY 73 (117)
T ss_pred CcEEEEEEEecCCCccCCC----CCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccc-----eeEeeccc
Confidence 4889888888766555431 23579999999999999998654211 11122222221 11222344
Q ss_pred CceEEEEEEEeecceeeeecccceeeeeeeeeee
Q 030783 136 GEMQYCFYILTRHGLRIECSSISKIQVLVILIYL 169 (171)
Q Consensus 136 ge~~yaFyIlTrhGLR~ECSS~skiQVdswLs~l 169 (171)
.+-.+-|.|.|.-|=-|-=+..+.-..++|+.+|
T Consensus 74 ~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I 107 (117)
T cd01230 74 SKKPHVFRLRTADWREFLFQTSSLKELQSWIERI 107 (117)
T ss_pred cCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHH
Confidence 4557899999876544433344445566787765
No 25
>PRK09039 hypothetical protein; Validated
Probab=90.24 E-value=0.12 Score=44.84 Aligned_cols=99 Identities=24% Similarity=0.438 Sum_probs=65.8
Q ss_pred CCcchhheeHHHHHhHHhh-------hcChHHHHHHHHHhhhhHHHHHhhh------hcceeEEEeeec----ccCCCCC
Q 030783 17 DGQEKVELTATELESLRSE-------LADLEDREAHLKAQLEHVDEILRSA------RLSGYLYIRTRW----KPLPGEP 79 (171)
Q Consensus 17 ~~qekvelt~~EvesLR~E-------la~~eEREa~lkAqLehvDEvLRsa------rlsgYLyiRtRW----~aLpgEp 79 (171)
+.+-+|+++.+|++.||.. |+.+|+|.+..++|++.+.+-|+.| .|+.| |+.- .+.-|.+
T Consensus 134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~---~~~~~~~l~~~~~~~ 210 (343)
T PRK09039 134 RALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRY---RSEFFGRLREILGDR 210 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHhCCC
Confidence 4455677777777777654 5566788888888888777666655 35554 3333 2344445
Q ss_pred CCCCCCCccccceeeEeeecceeEeEeeeCCCCCCCcceeehhhhc
Q 030783 80 PPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEV 125 (171)
Q Consensus 80 ppiDDtdVDDWlpRFVVl~G~cif~yL~sTDLsPqdStllsdIVEv 125 (171)
|.|.-. +| |||+ + +-++|-.-+++|+|++...|..|.++
T Consensus 211 ~~iri~--g~---~~~~-~-~~vlF~~gsa~L~~~~~~~L~~ia~~ 249 (343)
T PRK09039 211 EGIRIV--GD---RFVF-Q-SEVLFPTGSAELNPEGQAEIAKLAAA 249 (343)
T ss_pred CCcEEE--CC---EEEe-c-CCceeCCCCcccCHHHHHHHHHHHHH
Confidence 444332 22 7754 4 35889999999999999999887764
No 26
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.02 E-value=0.92 Score=33.63 Aligned_cols=74 Identities=14% Similarity=0.226 Sum_probs=44.9
Q ss_pred ccccceeeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCccccC-------------CceEEEEEEEee-cceee
Q 030783 87 VDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITREN-------------GEMQYCFYILTR-HGLRI 152 (171)
Q Consensus 87 VDDWlpRFVVl~G~cif~yL~sTDLsPqdStllsdIVEvg~lP~~~rEd-------------ge~~yaFyIlTr-hGLR~ 152 (171)
.+-|=+|+.||.+++|.||=--.|..|.|.+++.. .++..... ...++.|-|.|. .=+.+
T Consensus 30 ~~~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~------~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l 103 (121)
T cd01254 30 CDRWQKRWFIVKESFLAYMDDPSSAQILDVILFDV------DFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRSLKL 103 (121)
T ss_pred ccCCcceeEEEeCCEEEEEcCCCCCceeeEEEEcC------CccEEeCCcccccccccccccCCCceEEEEEcCCcEEEE
Confidence 45799999999999999987666666766666633 22222211 234667766543 23666
Q ss_pred eecccceeeeeeeeee
Q 030783 153 ECSSISKIQVLVILIY 168 (171)
Q Consensus 153 ECSS~skiQVdswLs~ 168 (171)
.|.|..+ ...|+.+
T Consensus 104 ~a~s~~~--~~~Wi~~ 117 (121)
T cd01254 104 KCKSSRK--LKQWMAS 117 (121)
T ss_pred EeCCHHH--HHHHHHH
Confidence 6665443 3345433
No 27
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=88.01 E-value=0.97 Score=34.65 Aligned_cols=91 Identities=14% Similarity=0.315 Sum_probs=48.6
Q ss_pred ceeEEEeeecccCCCCCCCCCCCCccccceeeEeeecc-eeEeEeeeCCCC---CCCcceeehhhhccCCCCcccc--CC
Q 030783 63 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGS-CIFFYLLSTDLS---PQDSTVLSDVVEVASLPSITRE--NG 136 (171)
Q Consensus 63 sgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~-cif~yL~sTDLs---PqdStllsdIVEvg~lP~~~rE--dg 136 (171)
-||||+|+... + ---|.-.|+..++. =+|=++. .+-. ++. ....+--.+|-+-|-.++ ..
T Consensus 2 ~GYLy~~~k~~--------~----~~~Wvk~y~~~~~~~~~f~m~~-~~q~s~~~~~-g~v~~~e~~~l~sc~~r~~~~~ 67 (104)
T cd01249 2 EGYLYMQEKSK--------F----GGSWTKYYCTYSKETRIFTMVP-FNQKTKTDMK-GAVAQDETLTLKSCSRRKTESI 67 (104)
T ss_pred CceEEEEcCCC--------C----CCeEEEEEEEEEcCCcEEEEEe-cccccccccC-cccccceEEeeeeccccccCCc
Confidence 49999999543 1 12499778888874 3432222 2211 222 233344445555565553 33
Q ss_pred ceEEEEEEE--eecc-eeeeecccceeeeeeeeeee
Q 030783 137 EMQYCFYIL--TRHG-LRIECSSISKIQVLVILIYL 169 (171)
Q Consensus 137 e~~yaFyIl--TrhG-LR~ECSS~skiQVdswLs~l 169 (171)
|-||||=|. +++| +-+.. .|+-+-..|+.|+
T Consensus 68 dRRFCFei~~~~~~~~~~lQA--~Se~~~~~Wi~A~ 101 (104)
T cd01249 68 DKRFCFDVEVEEKPGVITMQA--LSEKDRRLWIEAM 101 (104)
T ss_pred cceeeEeeeecCCCCeEEEEe--cCHHHHHHHHHhh
Confidence 559999995 4443 22332 3444444566553
No 28
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=84.07 E-value=0.75 Score=32.83 Aligned_cols=75 Identities=11% Similarity=0.150 Sum_probs=46.8
Q ss_pred cccceeeEeeecceeEeEeeeCCCC-----CCCcceeehhhhccCCCCccccCCceEEEEEEEeecceeeeecccceeee
Q 030783 88 DDWLPRFIVLHGSCIFFYLLSTDLS-----PQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQV 162 (171)
Q Consensus 88 DDWlpRFVVl~G~cif~yL~sTDLs-----PqdStllsdIVEvg~lP~~~rEdge~~yaFyIlTrhGLR~ECSS~skiQV 162 (171)
-.|=||+++|...-+.|+-.....+ +.+.+-++++ .|.. ..+.+-.++|.|.+.+ =.|+++-.|.-.-
T Consensus 16 ~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~-~v~~-----~~~~~~~~~F~I~~~~-rsf~l~A~s~eEk 88 (101)
T cd01219 16 EKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGM-QVCE-----GDNLERPHSFLVSGKQ-RCLELQARTQKEK 88 (101)
T ss_pred CCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccE-EEEe-----CCCCCcCceEEEecCC-cEEEEEcCCHHHH
Confidence 4688999999887655554222222 2233444442 1211 1134457899998888 6888887887778
Q ss_pred eeeeeee
Q 030783 163 LVILIYL 169 (171)
Q Consensus 163 dswLs~l 169 (171)
+.|+.+|
T Consensus 89 ~~W~~ai 95 (101)
T cd01219 89 NDWVQAI 95 (101)
T ss_pred HHHHHHH
Confidence 8887665
No 29
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=81.93 E-value=1.6 Score=33.48 Aligned_cols=56 Identities=29% Similarity=0.523 Sum_probs=35.1
Q ss_pred ccccceeeEeeecceeEeEeeeCCCCCCC---------cceeeh----hhhccCCCCccccCCceEEEEEEEeecc
Q 030783 87 VDDWLPRFIVLHGSCIFFYLLSTDLSPQD---------STVLSD----VVEVASLPSITRENGEMQYCFYILTRHG 149 (171)
Q Consensus 87 VDDWlpRFVVl~G~cif~yL~sTDLsPqd---------Stllsd----IVEvg~lP~~~rEdge~~yaFyIlTrhG 149 (171)
-..|-|||++|.|..+++|= --|+. +-=|.| +|..| |.-.-+ +.--+||-|.|-||
T Consensus 16 ~~~wrP~F~aL~~~dl~ly~----s~P~s~e~w~~p~~~y~L~~~atrvv~~~--~~~~~~-~~~~~~F~irtg~~ 84 (108)
T cd01258 16 SQRWRPRFLALKGSEFLFFE----TPPLSVEDWSRPLYVYKLYDVATRLVKNS--STRRLN-DQRDNCFLIRTGTQ 84 (108)
T ss_pred ccccceEEEEEcCCcEEEEe----CCCCCHHHHhChhhhChhHHhhhheeccC--CccCcC-CCCceEEEEEcCCc
Confidence 47899999999999999983 33442 221221 23333 321112 23348999999988
No 30
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=77.73 E-value=5.6 Score=29.21 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=50.8
Q ss_pred ceeEEEeeecccCCCCCCCCCCCCccccceeeEeeecceeEeEeeeCCCCCC--------------CcceeehhhhccCC
Q 030783 63 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQ--------------DSTVLSDVVEVASL 128 (171)
Q Consensus 63 sgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~sTDLsPq--------------dStllsdIVEvg~l 128 (171)
.|||+-+.-|..--.-.| . ---.|-.-|+||+|..++||=-.....+. .++-|.. ..++.-
T Consensus 3 eG~l~RK~~~~~~gkk~~-~---~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~-a~a~~a 77 (119)
T PF15410_consen 3 EGILMRKHELESGGKKAS-R---SKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHH-ALAEIA 77 (119)
T ss_dssp EEEEEEEEEEECTTCC-------S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT--EEEEE
T ss_pred eEEEEEEEEEcCCCCCcC-C---CCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecc-eEEEeC
Confidence 488888888876543332 2 23489999999999999999652211111 1111110 011112
Q ss_pred CCccccCCceEEEEEEEeecceeeeecccceeeeeeeeeee
Q 030783 129 PSITRENGEMQYCFYILTRHGLRIECSSISKIQVLVILIYL 169 (171)
Q Consensus 129 P~~~rEdge~~yaFyIlTrhGLR~ECSS~skiQVdswLs~l 169 (171)
+.+ -+-.+.|.+.|.-|-.|==.-.+.-.+..|+..|
T Consensus 78 ~dY----~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~I 114 (119)
T PF15410_consen 78 SDY----TKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAI 114 (119)
T ss_dssp TTB----TTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHH
T ss_pred ccc----ccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHH
Confidence 222 2346789999988866544444445555666543
No 31
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=77.37 E-value=3.6 Score=27.05 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=34.7
Q ss_pred hheeHHHHHhHHhhhcChHHHHHHHHHhhhhH----HHHHhhhh-cceeE
Q 030783 22 VELTATELESLRSELADLEDREAHLKAQLEHV----DEILRSAR-LSGYL 66 (171)
Q Consensus 22 velt~~EvesLR~Ela~~eEREa~lkAqLehv----DEvLRsar-lsgYL 66 (171)
+.-..+|++.|..+++.++++-..|+++++.+ |.|-+.|| --||.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~ 68 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMV 68 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCc
Confidence 34456788888889988888888888888776 66778888 66664
No 32
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=71.98 E-value=3.8 Score=40.14 Aligned_cols=112 Identities=17% Similarity=0.252 Sum_probs=77.4
Q ss_pred eHHHHHhHHhhhcChHHHHHHHHHhhhhHHH----------------HHhhhhcceeEEEeeecccCCCCCCCCCCCCcc
Q 030783 25 TATELESLRSELADLEDREAHLKAQLEHVDE----------------ILRSARLSGYLYIRTRWKPLPGEPPPIDDTDVD 88 (171)
Q Consensus 25 t~~EvesLR~Ela~~eEREa~lkAqLehvDE----------------vLRsarlsgYLyiRtRW~aLpgEpppiDDtdVD 88 (171)
-++.+..+|.|.+...++..+....+.+..+ ....-+..||||.|+-= ---
T Consensus 223 i~~~v~ql~~~~~~e~~am~~~~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~~~-------------~~~ 289 (785)
T KOG0521|consen 223 VATYVQQLREESDAEQRAMEQRYQELRSASNLESRPKSDSASPSGGNLKLGYRMEGYLRKKASN-------------ASK 289 (785)
T ss_pred HHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhhhccccccccccccccchhhhhhhhhhhccc-------------chh
Confidence 4678899999888777777777776666533 23445677888887631 112
Q ss_pred ccceeeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCccccCCc---eEEEEEEEeecceeeeecccceeeeee
Q 030783 89 DWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGE---MQYCFYILTRHGLRIECSSISKIQVLV 164 (171)
Q Consensus 89 DWlpRFVVl~G~cif~yL~sTDLsPqdStllsdIVEvg~lP~~~rEdge---~~yaFyIlTrhGLR~ECSS~skiQVds 164 (171)
-|=+|+--+||.++-|+.+..+..+ .+.....++-.+-+.+ -||||-|+| | +.++..|-++
T Consensus 290 tw~r~~f~~q~~~l~~~~r~~~~~~--------~~~~dL~~csvk~~~~~~drr~CF~iiS-~------tks~~lQAes 353 (785)
T KOG0521|consen 290 TWKRRWFSIQDGQLGYQHRGADAEN--------VLIEDLRTCSVKPDAEQRDRRFCFEIIS-P------TKSYLLQAES 353 (785)
T ss_pred hHHhhhhhhhccccccccccccccc--------cccccchhccccCCcccccceeeEEEec-C------CcceEEecCc
Confidence 3555999999999999999999987 5555555665554443 599999998 2 3444555544
No 33
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=71.80 E-value=4.6 Score=30.17 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=29.7
Q ss_pred HHhhhcChHHHHHHHHHhhhhHHHHHhhhhcce
Q 030783 32 LRSELADLEDREAHLKAQLEHVDEILRSARLSG 64 (171)
Q Consensus 32 LR~Ela~~eEREa~lkAqLehvDEvLRsarlsg 64 (171)
.-.||..+||+-++.+-+||.||-=||+..||.
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~ 35 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSP 35 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCCh
Confidence 457899999999999999999999999988874
No 34
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=70.82 E-value=2.1 Score=30.66 Aligned_cols=30 Identities=30% Similarity=0.686 Sum_probs=23.6
Q ss_pred HHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 030783 26 ATELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (171)
Q Consensus 26 ~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRs 59 (171)
+.|||-||..|+++++|-++|+.+ .++||+
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~E----N~~Lk~ 42 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEE----NNLLKQ 42 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh
Confidence 469999999999999998776543 456664
No 35
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=69.54 E-value=4.2 Score=32.66 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=21.1
Q ss_pred eHHHHHhHHhhhcChHHHHHHHHHh
Q 030783 25 TATELESLRSELADLEDREAHLKAQ 49 (171)
Q Consensus 25 t~~EvesLR~Ela~~eEREa~lkAq 49 (171)
-+.|||-||..|.+++||-++|.+.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999998776553
No 36
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=66.70 E-value=9.3 Score=30.27 Aligned_cols=65 Identities=15% Similarity=0.085 Sum_probs=52.8
Q ss_pred ccceeeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCccccCCceEEEEEEEeecceeeee
Q 030783 89 DWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIEC 154 (171)
Q Consensus 89 DWlpRFVVl~G~cif~yL~sTDLsPqdStllsdIVEvg~lP~~~rEdge~~yaFyIlTrhGLR~EC 154 (171)
-|--+|-+|..-||-+|.--++=.|--.+=|+||.-|-+-.+....++..-|||=|.|.. +-|-+
T Consensus 15 ~rKRhYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~-~vY~V 79 (117)
T cd01239 15 RRKKHYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTT-NVYFV 79 (117)
T ss_pred ceeeeEEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEecC-EEEEe
Confidence 466789999999999999999888999999999999865444555678889999999943 44444
No 37
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=66.25 E-value=5.9 Score=28.03 Aligned_cols=35 Identities=34% Similarity=0.447 Sum_probs=17.5
Q ss_pred CcchhheeHHHHHhHHhhhcChHHHHHHHHHhhhh
Q 030783 18 GQEKVELTATELESLRSELADLEDREAHLKAQLEH 52 (171)
Q Consensus 18 ~qekvelt~~EvesLR~Ela~~eEREa~lkAqLeh 52 (171)
..++++-..++++.|+.+++.++.+.+-+++|++.
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455555555555555555555555443
No 38
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=63.53 E-value=6.9 Score=31.22 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=29.0
Q ss_pred hheeHHHHHhHHhhhcChH---------HHHHHHHHhhhhHHHHHhhhhc
Q 030783 22 VELTATELESLRSELADLE---------DREAHLKAQLEHVDEILRSARL 62 (171)
Q Consensus 22 velt~~EvesLR~Ela~~e---------EREa~lkAqLehvDEvLRsarl 62 (171)
.+-..+|++.|+.+|+.|. ++.+.+.+++..+.+.|..|++
T Consensus 36 ~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~~A~I 85 (160)
T PRK06342 36 LKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARRRTAQL 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHccCEE
Confidence 3445567777777776662 4556677888888888888876
No 39
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=62.25 E-value=6.6 Score=30.60 Aligned_cols=37 Identities=32% Similarity=0.560 Sum_probs=27.7
Q ss_pred hccCCCC-ccccCCceEEEEEEEeecce-eeeeccccee
Q 030783 124 EVASLPS-ITRENGEMQYCFYILTRHGL-RIECSSISKI 160 (171)
Q Consensus 124 Evg~lP~-~~rEdge~~yaFyIlTrhGL-R~ECSS~ski 160 (171)
|+-.-|. ...|+|+.+|.|=+.|.+|+ .|||-|...-
T Consensus 54 ~~~awpgr~~~e~~~~~~yfgL~T~~G~vEfec~~~~~~ 92 (110)
T PF08458_consen 54 EIPAWPGRELREDGEERRYFGLKTAQGVVEFECDSQREY 92 (110)
T ss_pred CcccCCCcccccCCceEEEEEEEecCcEEEEEeCChhhH
Confidence 3444453 45688989999999999996 7999876543
No 40
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=60.30 E-value=15 Score=26.87 Aligned_cols=32 Identities=31% Similarity=0.894 Sum_probs=20.9
Q ss_pred ceeEEEeeecccCCCCCCCCCCCCccccceeeEeee-cceeEeEee
Q 030783 63 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLH-GSCIFFYLL 107 (171)
Q Consensus 63 sgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~-G~cif~yL~ 107 (171)
+|||| .|..-=|. -|=+||.||+ +-.+-||=-
T Consensus 2 ~G~l~---K~~~~~~k----------gWk~RwFiL~k~~~L~YyK~ 34 (112)
T PF15413_consen 2 EGYLY---KWGNKFGK----------GWKKRWFILRKDGVLSYYKI 34 (112)
T ss_dssp EEEEE---E--TTS-S------------EEEEEEEE-TTEEEEESS
T ss_pred CceEE---EecCCCCc----------CccccEEEEEeCCEEEEeec
Confidence 58888 44433344 4999999999 888888866
No 41
>PF12852 Cupin_6: Cupin
Probab=59.61 E-value=18 Score=27.38 Aligned_cols=43 Identities=37% Similarity=0.764 Sum_probs=31.4
Q ss_pred hHHHHHhhhhcceeEEEeee----ccc-CCCCCCCCCCCCccccceeeEeeecceeEe
Q 030783 52 HVDEILRSARLSGYLYIRTR----WKP-LPGEPPPIDDTDVDDWLPRFIVLHGSCIFF 104 (171)
Q Consensus 52 hvDEvLRsarlsgYLyiRtR----W~a-LpgEpppiDDtdVDDWlpRFVVl~G~cif~ 104 (171)
-++++|+..|+.|.+|.|.. |.- .|+.+ . ..=.+|++|+|.+.
T Consensus 2 ~Ls~lL~~l~l~~~~~~~~~~~~~W~~~~~~~~---------~-~~fh~V~~G~~~l~ 49 (186)
T PF12852_consen 2 PLSDLLSSLRLRGSLFFRCELCGPWGLRFPGSP---------G-ASFHVVLRGSCWLR 49 (186)
T ss_pred chHHHHhhCCCceEEEEEEEEeCCcEEeccCCC---------c-eEEEEEECCeEEEE
Confidence 47899999999999999875 432 22221 1 55568999999765
No 42
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=59.07 E-value=12 Score=34.29 Aligned_cols=41 Identities=27% Similarity=0.388 Sum_probs=33.4
Q ss_pred chhheeHHHHHhHHhhhcChHHHHHH-HHHhhhhHHHHHhhh
Q 030783 20 EKVELTATELESLRSELADLEDREAH-LKAQLEHVDEILRSA 60 (171)
Q Consensus 20 ekvelt~~EvesLR~Ela~~eEREa~-lkAqLehvDEvLRsa 60 (171)
|-+|+-..|+..|+.|||++|||-+. .-.+...|.|++.+.
T Consensus 269 d~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~ 310 (395)
T PF10267_consen 269 DLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESC 310 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34577889999999999999999875 456777888888764
No 43
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=57.94 E-value=16 Score=29.92 Aligned_cols=41 Identities=32% Similarity=0.408 Sum_probs=28.4
Q ss_pred eHHHHHhHHhhhcChHHHHH---HHHHhhhhHHHHHhhhhccee
Q 030783 25 TATELESLRSELADLEDREA---HLKAQLEHVDEILRSARLSGY 65 (171)
Q Consensus 25 t~~EvesLR~Ela~~eEREa---~lkAqLehvDEvLRsarlsgY 65 (171)
..+|-+.|+.|++.++.+.+ .++++.+++.++|....-..|
T Consensus 74 l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~~~~~ 117 (276)
T PRK13922 74 LREENEELKKELLELESRLQELEQLEAENARLRELLNLKESLDY 117 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 45677777777777777666 567777788888776554443
No 44
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=57.42 E-value=15 Score=33.07 Aligned_cols=34 Identities=35% Similarity=0.462 Sum_probs=29.9
Q ss_pred HHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 030783 26 ATELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (171)
Q Consensus 26 ~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRs 59 (171)
++|-|+|-+|+.++|.|-..||.|++++-.=+|+
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~y 280 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRY 280 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999998755544
No 45
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=56.74 E-value=12 Score=27.88 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=25.2
Q ss_pred hhheeHHHHHhHHhhhcChHHHHHHHHHhhhhH
Q 030783 21 KVELTATELESLRSELADLEDREAHLKAQLEHV 53 (171)
Q Consensus 21 kvelt~~EvesLR~Ela~~eEREa~lkAqLehv 53 (171)
+..-..+|++.++.|++.++.|.+.|+++++.+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556788888888888888888888887665
No 46
>PRK04406 hypothetical protein; Provisional
Probab=51.28 E-value=32 Score=24.62 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=20.6
Q ss_pred HHhHHhhhcChHHHHHHHHHhhhhHHHHHhhhhcce
Q 030783 29 LESLRSELADLEDREAHLKAQLEHVDEILRSARLSG 64 (171)
Q Consensus 29 vesLR~Ela~~eEREa~lkAqLehvDEvLRsarlsg 64 (171)
+++|-..++.-...-..|++||.++-+-|+++.-++
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~~~ 62 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYVVGKVKNMDSSN 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 444444444444444566777777777677665444
No 47
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=51.28 E-value=22 Score=26.85 Aligned_cols=39 Identities=36% Similarity=0.529 Sum_probs=30.5
Q ss_pred hhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 030783 21 KVELTATELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (171)
Q Consensus 21 kvelt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRs 59 (171)
+++-...+++.+..|++.+++++.++++++.+....++.
T Consensus 74 ~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 74 DVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888888999999999999998887766654
No 48
>PHA03230 nuclear protein UL55; Provisional
Probab=50.90 E-value=6.8 Score=32.93 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=57.9
Q ss_pred eeeEeeecce-------eEeEeeeCCCCCCCcceeehhhhccCCCCccccCCc---------------eEE-----EEEE
Q 030783 92 PRFIVLHGSC-------IFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGE---------------MQY-----CFYI 144 (171)
Q Consensus 92 pRFVVl~G~c-------if~yL~sTDLsPqdStllsdIVEvg~lP~~~rEdge---------------~~y-----aFyI 144 (171)
.|--+|+-.| .|||=+.+|=+|..+.++.|+--.+.+=|..|--.| |++ ..+-
T Consensus 52 ~RsY~iRa~C~~~~~lHaFF~gl~~~~~~~~~p~~~dl~~f~~lln~~~~l~el~~~~~lC~aPFSaaTi~d~~~~~~~~ 131 (180)
T PHA03230 52 TRTYTIRATCNTSGDLHAFFFGLFTDSKPSEQPSLPDLRNFCRLLNNPRVLRELRTKHELCSAPFSAATIKDSLDDGYLE 131 (180)
T ss_pred ceeEEEEeecCCCCceeEEEEEEeecCCcccCCCHHHHHHHHHHHcCHHHHHHhcccCCCCCCCcchheeeccCCCCcce
Confidence 6888999888 699999999999988998887665555444332111 111 1226
Q ss_pred Eeecceeeeecccceeeeeeeeee
Q 030783 145 LTRHGLRIECSSISKIQVLVILIY 168 (171)
Q Consensus 145 lTrhGLR~ECSS~skiQVdswLs~ 168 (171)
+|-+||.|-|=-.++|-++||..|
T Consensus 132 ~~I~Gl~yHCHCk~PFS~eCW~gA 155 (180)
T PHA03230 132 YTINGLCYHCHCKNPFSLECWQGA 155 (180)
T ss_pred eEEeEEEEeeccCCCCCHHHHHHH
Confidence 788999999999999999999865
No 49
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=50.08 E-value=23 Score=26.23 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=14.4
Q ss_pred eHHHHHhHHhhhcChHHHHHHHHHhhhhH
Q 030783 25 TATELESLRSELADLEDREAHLKAQLEHV 53 (171)
Q Consensus 25 t~~EvesLR~Ela~~eEREa~lkAqLehv 53 (171)
++++++.|+..++..+.|-..+..+++|+
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455555555555555555555555444
No 50
>PF04537 Herpes_UL55: Herpesvirus UL55 protein; InterPro: IPR007622 In infected cells, UL55 is associated with the nuclear matrix, and found adjacent to compartments containing the capsid protein ICP35. UL55 was not detected in assembled virions. It is thought that UL55 may play a role in virion assembly or maturation [].; GO: 0019067 viral assembly, maturation, egress, and release
Probab=49.54 E-value=11 Score=31.49 Aligned_cols=71 Identities=27% Similarity=0.343 Sum_probs=54.6
Q ss_pred eeeEeeecce-------eEeEeeeCCCCCCCcceeehhhhccCCCCcc---c------------------------cCCc
Q 030783 92 PRFIVLHGSC-------IFFYLLSTDLSPQDSTVLSDVVEVASLPSIT---R------------------------ENGE 137 (171)
Q Consensus 92 pRFVVl~G~c-------if~yL~sTDLsPqdStllsdIVEvg~lP~~~---r------------------------Edge 137 (171)
.|--+|+-.| .|||=+.+|=+|.-|.++.|+--.-.|=|.. + ++|.
T Consensus 46 ~Rsy~lRa~C~~~~~~HaFF~gl~~~~~~~~~p~~~dl~~f~~llN~~~~l~el~~~~~~~~C~~PFSaaTi~d~~~~~~ 125 (169)
T PF04537_consen 46 TRSYVLRATCNTSGDLHAFFFGLFKDSKESMSPLLSDLRNFCRLLNNPPVLRELRDKHGRPLCSAPFSAATIKDSPDDGY 125 (169)
T ss_pred eeeEEEEeecCCCCceeEEEEEEEecCCCccCcchHhHHHHHHHHcChHHHHHHhhcccccccCCCcccceeeccCCCCC
Confidence 6888899888 6999999999999998887764333332222 1 3333
Q ss_pred eEEEEEEEeecceeeeecccceeeeeeeeee
Q 030783 138 MQYCFYILTRHGLRIECSSISKIQVLVILIY 168 (171)
Q Consensus 138 ~~yaFyIlTrhGLR~ECSS~skiQVdswLs~ 168 (171)
-+|-+||.|-|=-.++|-+++|..|
T Consensus 126 ------~~~I~Gl~yHCHCk~PFS~eCW~gA 150 (169)
T PF04537_consen 126 ------EYTINGLCYHCHCKNPFSLECWRGA 150 (169)
T ss_pred ------ceEEEEEEEEeecCCCCCHHHHHHH
Confidence 6688999999999999999999865
No 51
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=49.08 E-value=17 Score=25.86 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=24.6
Q ss_pred chhheeHHHHHhHHhhhcChHHHHHHHHHhhhh
Q 030783 20 EKVELTATELESLRSELADLEDREAHLKAQLEH 52 (171)
Q Consensus 20 ekvelt~~EvesLR~Ela~~eEREa~lkAqLeh 52 (171)
+.++-..+|+..+..+|+.+|+....+.+++.+
T Consensus 67 ~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 67 EDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666778888888888888887777777654
No 52
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.99 E-value=17 Score=33.63 Aligned_cols=37 Identities=24% Similarity=0.709 Sum_probs=33.2
Q ss_pred CccccceeeEeeecceeEeEeeeCCCCCCCcceeehh
Q 030783 86 DVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDV 122 (171)
Q Consensus 86 dVDDWlpRFVVl~G~cif~yL~sTDLsPqdStllsdI 122 (171)
-|.-|--||.||.--|+|||=..||--|-+-+-|..+
T Consensus 273 rvktWKrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNl 309 (395)
T KOG0930|consen 273 RVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENL 309 (395)
T ss_pred cccchhheeEEeecceeeeeeeccCCCCCcceecccc
Confidence 5788999999999999999999999999998877653
No 53
>PF08848 DUF1818: Domain of unknown function (DUF1818); InterPro: IPR014947 This entry represents a small family of uncharacterised cyanobacterial proteins. ; PDB: 2IT9_A 2NVN_A.
Probab=48.25 E-value=5.7 Score=31.39 Aligned_cols=65 Identities=23% Similarity=0.412 Sum_probs=49.9
Q ss_pred hhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhhhhcceeEEEeeecccCCCCCCCCCCCCccccceeeEeeec
Q 030783 21 KVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHG 99 (171)
Q Consensus 21 kvelt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRsarlsgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G 99 (171)
-||||++|...+..=+..+.+--+.++.|| .-.-++++=+-.--=|..+.|.| +.|=.|||..+|
T Consensus 28 AiELT~~E~~~f~~Ll~~L~~q~~~i~~eL------M~EE~I~lE~E~~~~W~eleG~~--------~~~sLr~IL~~~ 92 (117)
T PF08848_consen 28 AIELTEAEFNDFCRLLQQLAEQMQAIADEL------MDEESITLEAESDLWWMELEGYP--------HAWSLRLILNQG 92 (117)
T ss_dssp EEEE-HHHHHHHHHHHHHHHHHHHCCHTTS------STTSEEEEEEEETTEEEEEEEET--------TEEEEEEEE-TC
T ss_pred heeecHHHHHHHHHHHHHHHHHHHHHHHHh------cchhhheeeeccccEEEEecccc--------CceEEEEEEcCC
Confidence 589999999999999988888777777766 33345566565566688899988 789999998887
No 54
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=47.61 E-value=22 Score=30.49 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=16.7
Q ss_pred HHHHhHHhhhcChHHHHHHHHHhhhhHHHHHh
Q 030783 27 TELESLRSELADLEDREAHLKAQLEHVDEILR 58 (171)
Q Consensus 27 ~EvesLR~Ela~~eEREa~lkAqLehvDEvLR 58 (171)
.|+++++.+++.++++-+.+++++.+.+.++.
T Consensus 237 ~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 237 EELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555666666555544
No 55
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.54 E-value=22 Score=27.83 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=27.7
Q ss_pred hhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHHH
Q 030783 21 KVELTATELESLRSELADLEDREAHLKAQLEHVDE 55 (171)
Q Consensus 21 kvelt~~EvesLR~Ela~~eEREa~lkAqLehvDE 55 (171)
+.+-...|++.|+.||+.+|.=-..||.|.++..+
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455689999999999988888889999888753
No 56
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=46.34 E-value=22 Score=31.82 Aligned_cols=43 Identities=30% Similarity=0.445 Sum_probs=35.8
Q ss_pred CCCcchhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHh
Q 030783 16 SDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILR 58 (171)
Q Consensus 16 ~~~qekvelt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLR 58 (171)
....+++.-..++++.|+.|++.++.+.+.+++|+..++.+-.
T Consensus 67 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (525)
T TIGR02231 67 RPDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIRE 109 (525)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455677777889999999999999999999999988887753
No 57
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=45.84 E-value=24 Score=27.16 Aligned_cols=25 Identities=8% Similarity=0.359 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhcc
Q 030783 39 LEDREAHLKAQLEHVDEILRSARLS 63 (171)
Q Consensus 39 ~eEREa~lkAqLehvDEvLRsarls 63 (171)
+.++.+.+.+++..+.+.|.+|++-
T Consensus 47 ak~~~~~~e~ri~~L~~~L~~a~iv 71 (151)
T TIGR01462 47 AKEEQGFNEGRIAELEDLLANAQVI 71 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccc
Confidence 3567788889999999999999863
No 58
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=45.40 E-value=30 Score=27.70 Aligned_cols=35 Identities=37% Similarity=0.573 Sum_probs=28.8
Q ss_pred eeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHh
Q 030783 24 LTATELESLRSELADLEDREAHLKAQLEHVDEILR 58 (171)
Q Consensus 24 lt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLR 58 (171)
++..|++..+.+++.+.++|+.|..+++..-+-++
T Consensus 64 v~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~ 98 (152)
T PF07321_consen 64 VSLKELEKWQQQVASLREREAELEQQLAEAEEQLE 98 (152)
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999888776554443
No 59
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=43.84 E-value=22 Score=26.52 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=36.3
Q ss_pred CCcchhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 030783 17 DGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (171)
Q Consensus 17 ~~qekvelt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRs 59 (171)
.-+.+++-..+|++.|+.+.+.++++-+.|+...+-|+|+.|.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 3466778888899999999999999999998877889988775
No 60
>PF15456 Uds1: Up-regulated During Septation
Probab=43.52 E-value=33 Score=26.68 Aligned_cols=29 Identities=34% Similarity=0.488 Sum_probs=26.6
Q ss_pred heeHHHHHhHHhhhcChHHHHHHHHHhhh
Q 030783 23 ELTATELESLRSELADLEDREAHLKAQLE 51 (171)
Q Consensus 23 elt~~EvesLR~Ela~~eEREa~lkAqLe 51 (171)
-|+..||++|+.|+..++.|-..+++.|.
T Consensus 18 iLs~eEVe~LKkEl~~L~~R~~~lr~kl~ 46 (124)
T PF15456_consen 18 ILSFEEVEELKKELRSLDSRLEYLRRKLA 46 (124)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999998887
No 61
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=43.16 E-value=14 Score=26.08 Aligned_cols=38 Identities=21% Similarity=0.397 Sum_probs=31.7
Q ss_pred HHhhhcChHHHHHHHHHhhhhHHHHHhhhhcceeEEEeeecccCCCC
Q 030783 32 LRSELADLEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLPGE 78 (171)
Q Consensus 32 LR~Ela~~eEREa~lkAqLehvDEvLRsarlsgYLyiRtRW~aLpgE 78 (171)
++.-+..+.+|-..+..-++-+|.++.. .+.|..||-|
T Consensus 41 I~k~I~~~~~R~~li~~~i~~i~~~~~~---------~~~w~~LP~E 78 (97)
T PF09372_consen 41 IKKIIENAIKRYKLINKAIEVIDNICDD---------NNYWNILPIE 78 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC---------CCchhhCCHH
Confidence 4556777889999999999999998876 7889999965
No 62
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=42.32 E-value=28 Score=23.55 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=25.4
Q ss_pred hheeHHHHHhHHhhhcChHHHHHHHHHhhhhH
Q 030783 22 VELTATELESLRSELADLEDREAHLKAQLEHV 53 (171)
Q Consensus 22 velt~~EvesLR~Ela~~eEREa~lkAqLehv 53 (171)
+.-+.+|++++..+++.+++...+|+.+...+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999998876653
No 63
>PRK00295 hypothetical protein; Provisional
Probab=42.28 E-value=58 Score=22.72 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=23.1
Q ss_pred eHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhhhh
Q 030783 25 TATELESLRSELADLEDREAHLKAQLEHVDEILRSAR 61 (171)
Q Consensus 25 t~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRsar 61 (171)
...-+++|-..++.-...-..|++||..+-+-|++..
T Consensus 17 qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 17 QDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344556666665555555667777777777777655
No 64
>PRK11546 zraP zinc resistance protein; Provisional
Probab=41.71 E-value=26 Score=28.24 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.0
Q ss_pred ccCCCCcchhheeHHHHHhHHhhhc
Q 030783 13 VSSSDGQEKVELTATELESLRSELA 37 (171)
Q Consensus 13 ~s~~~~qekvelt~~EvesLR~Ela 37 (171)
.+++.|++||.-.+.|+..||.+|.
T Consensus 82 ~~~~pD~~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 82 TANPPDSSKINAVAKEMENLRQSLD 106 (143)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999765
No 65
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=41.56 E-value=36 Score=25.44 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=28.5
Q ss_pred hheeHHHHHhHHhhhcChHHHHHHHHHhhhhHH
Q 030783 22 VELTATELESLRSELADLEDREAHLKAQLEHVD 54 (171)
Q Consensus 22 velt~~EvesLR~Ela~~eEREa~lkAqLehvD 54 (171)
.|=..+|.+....+|+.+++|+.+|+.|+.++.
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568999999999999999999999998886
No 66
>PRK14161 heat shock protein GrpE; Provisional
Probab=41.56 E-value=26 Score=28.61 Aligned_cols=35 Identities=26% Similarity=0.485 Sum_probs=23.1
Q ss_pred chhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHH
Q 030783 20 EKVELTATELESLRSELADLEDREAHLKAQLEHVD 54 (171)
Q Consensus 20 ekvelt~~EvesLR~Ela~~eEREa~lkAqLehvD 54 (171)
+-++-..+|++.|..|++++.+|-..++|..+|.-
T Consensus 19 ~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~r 53 (178)
T PRK14161 19 EIVETANPEITALKAEIEELKDKLIRTTAEIDNTR 53 (178)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556677777777777777666777777653
No 67
>PRK02793 phi X174 lysis protein; Provisional
Probab=41.26 E-value=51 Score=23.21 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=25.6
Q ss_pred HHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhhhhcce
Q 030783 26 ATELESLRSELADLEDREAHLKAQLEHVDEILRSARLSG 64 (171)
Q Consensus 26 ~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRsarlsg 64 (171)
..-+++|-..++.-...-..|++||.++-+-|++.+-++
T Consensus 21 e~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~ 59 (72)
T PRK02793 21 EITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPSN 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 334555655565555555677888888888787776554
No 68
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=40.31 E-value=25 Score=24.93 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=10.6
Q ss_pred HHhHHhhhcChHHHHHHHHHhhhhH
Q 030783 29 LESLRSELADLEDREAHLKAQLEHV 53 (171)
Q Consensus 29 vesLR~Ela~~eEREa~lkAqLehv 53 (171)
++.|+.++..+++.-..+.++++.+
T Consensus 96 ~~~l~~~~~~l~~~~~~~~~~~~~l 120 (129)
T cd00890 96 LETLEKQIEKLEKQLEKLQDQITEL 120 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 69
>PF06401 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-terminal domain ; InterPro: IPR010483 The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family. The protein inhibits binding of all currently known ligands of these receptors []. Two different studies have provided conflicting domain boundaries.; GO: 0008201 heparin binding, 0050750 low-density lipoprotein particle receptor binding, 0005783 endoplasmic reticulum; PDB: 2FCW_A 2P03_A 2FTU_A 2P01_A.
Probab=39.47 E-value=40 Score=28.92 Aligned_cols=36 Identities=42% Similarity=0.586 Sum_probs=27.9
Q ss_pred heeHHHHHhHHhhhcChHHHH---HHHHHhhhhHHHHHh
Q 030783 23 ELTATELESLRSELADLEDRE---AHLKAQLEHVDEILR 58 (171)
Q Consensus 23 elt~~EvesLR~Ela~~eERE---a~lkAqLehvDEvLR 58 (171)
.+|..|++|||.||---|.|- .++++||+...+-++
T Consensus 125 nFT~~ELeSlkeEL~HfE~rl~K~~H~~~el~~~~~k~~ 163 (214)
T PF06401_consen 125 NFTEDELESLKEELKHFEKRLEKHRHYQEELELSHEKLK 163 (214)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999888775 467788887777665
No 70
>PF03836 RasGAP_C: RasGAP C-terminus; InterPro: IPR000593 Ras GTPase-activating protein (rasGAP) is a major contributor to the down-regulation of ras by facilitating GTP hydrolysis of activated ras. In addition, GAP participates in the down-stream effector system of the ras signalling pathway. Abnormal signal transduction involving activated ras genes plays a major role in the development of a variety of tumours. Depending on the precise genetic alteration, its location within the gene and the effects it exerts on protein function, rasGAP can theoretically function as either an oncogene or as a tumour suppressor gene [].; GO: 0005099 Ras GTPase activator activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3ISU_A 3IEZ_A 4EZA_B 1X0H_A.
Probab=39.40 E-value=9.9 Score=29.06 Aligned_cols=40 Identities=30% Similarity=0.493 Sum_probs=0.0
Q ss_pred heeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhhhhc
Q 030783 23 ELTATELESLRSELADLEDREAHLKAQLEHVDEILRSARL 62 (171)
Q Consensus 23 elt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRsarl 62 (171)
+-..+|+++|+.=+..+++....|..||+.-++-+.+++-
T Consensus 47 ~~r~~El~~l~~tl~~L~~k~~~l~~ql~~Y~~Yi~~~l~ 86 (142)
T PF03836_consen 47 EQRKQELEKLRQTLKNLNEKNKFLEEQLDSYNEYIKNCLS 86 (142)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456899999999999999999999999988877766543
No 71
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=38.57 E-value=92 Score=26.01 Aligned_cols=85 Identities=22% Similarity=0.311 Sum_probs=51.2
Q ss_pred ceeEEEeeecccCCC-CCCCCCCCCccccceeeEeeecceeEeEeeeCCCCCCCcceeehhhhccC-CCCccccCCceEE
Q 030783 63 SGYLYIRTRWKPLPG-EPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVAS-LPSITRENGEMQY 140 (171)
Q Consensus 63 sgYLyiRtRW~aLpg-EpppiDDtdVDDWlpRFVVl~G~cif~yL~sTDLsPqdStllsdIVEvg~-lP~~~rEdge~~y 140 (171)
+-++.+|+|+.+++| .+|+.-=..++|+=+.=..=.|.+..--++-+|+.+ |-.+--=.++-|. +|-+..+..|--|
T Consensus 126 a~~l~v~k~y~~~~g~~~~~~vvg~~~dv~~~~~~g~~~~~~~~llp~~~~~-~~~~~~~~~~PG~~~~~~~~H~~eh~~ 204 (260)
T TIGR03214 126 ARFFLYKKRYQPVEGLHAPELVVGNEKDIEPEPYEGMDDVILTTLLPKELAF-DMNVHILSFEPGASHPYIETHVMEHGL 204 (260)
T ss_pred EEEEEEEeeeEEcCCCCCCCeeecCHHHCCccccCCCCcEEEEEeCchhcCC-CcEEEEEEECCCcccCCcccccceeEE
Confidence 446889999999999 888765566666655544334455443333677777 4444334445554 4533444433333
Q ss_pred EEEEEeecce
Q 030783 141 CFYILTRHGL 150 (171)
Q Consensus 141 aFyIlTrhGL 150 (171)
|||.=+|.
T Consensus 205 --yiL~G~G~ 212 (260)
T TIGR03214 205 --YVLEGKGV 212 (260)
T ss_pred --EEEeceEE
Confidence 89987776
No 72
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.48 E-value=28 Score=22.78 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=16.3
Q ss_pred heeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHh
Q 030783 23 ELTATELESLRSELADLEDREAHLKAQLEHVDEILR 58 (171)
Q Consensus 23 elt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLR 58 (171)
.-+..+++.++.|..+++++-..++.--+.|.++-|
T Consensus 27 ~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 27 AELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 333444444444444444444444334444444433
No 73
>PRK14147 heat shock protein GrpE; Provisional
Probab=38.06 E-value=38 Score=27.43 Aligned_cols=35 Identities=31% Similarity=0.372 Sum_probs=27.6
Q ss_pred chhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHH
Q 030783 20 EKVELTATELESLRSELADLEDREAHLKAQLEHVD 54 (171)
Q Consensus 20 ekvelt~~EvesLR~Ela~~eEREa~lkAqLehvD 54 (171)
...+-..++++.|+.|++++.+|-..+.|..+|.-
T Consensus 18 ~~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~r 52 (172)
T PRK14147 18 PETDPLKAEVESLRSEIALVKADALRERADLENQR 52 (172)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444667889999999999998888888888764
No 74
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=37.97 E-value=28 Score=27.86 Aligned_cols=39 Identities=33% Similarity=0.482 Sum_probs=29.6
Q ss_pred HHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhhhhccee
Q 030783 27 TELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGY 65 (171)
Q Consensus 27 ~EvesLR~Ela~~eEREa~lkAqLehvDEvLRsarlsgY 65 (171)
+.+.++.-||..+|.||.+||+|...+-+.-+.+.+.-|
T Consensus 72 ~~l~~~~~~L~~Le~r~e~Lk~~~~~~~~~~~~~~a~~~ 110 (120)
T PF04521_consen 72 AQLSDLNLELEKLERREEQLKTQIQVLTAAAKLAKAPVY 110 (120)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 367788889999999999999998776665555554433
No 75
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=37.87 E-value=8.8 Score=28.47 Aligned_cols=28 Identities=39% Similarity=0.490 Sum_probs=1.6
Q ss_pred eHHHHHhHHhhhcChHHHHHHHHHhhhh
Q 030783 25 TATELESLRSELADLEDREAHLKAQLEH 52 (171)
Q Consensus 25 t~~EvesLR~Ela~~eEREa~lkAqLeh 52 (171)
+..++++|++|++.+.++.+.|..|...
T Consensus 18 LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 18 LESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp -------------------------HT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4467888899999888888888888877
No 76
>PRK14162 heat shock protein GrpE; Provisional
Probab=37.59 E-value=35 Score=28.39 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=30.5
Q ss_pred CCCcchhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHH
Q 030783 16 SDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVD 54 (171)
Q Consensus 16 ~~~qekvelt~~EvesLR~Ela~~eEREa~lkAqLehvD 54 (171)
...+..++-..++++.|+.+++++.++-..++|..+|+-
T Consensus 35 ~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~r 73 (194)
T PRK14162 35 QEKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQ 73 (194)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666778889999999999888888888888763
No 77
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=37.55 E-value=46 Score=24.25 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=24.5
Q ss_pred HHHHHhHHhhhcChHHHHHHHHHhhhhHHHH
Q 030783 26 ATELESLRSELADLEDREAHLKAQLEHVDEI 56 (171)
Q Consensus 26 ~~EvesLR~Ela~~eEREa~lkAqLehvDEv 56 (171)
...+.+++..+.+++++-+.++-++..||+|
T Consensus 41 ~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~I 71 (99)
T PF10046_consen 41 KDIAAGLEKNLEDLNQKYEELQPYLQQIDQI 71 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888888875
No 78
>PRK02119 hypothetical protein; Provisional
Probab=37.16 E-value=74 Score=22.51 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=18.4
Q ss_pred HHhHHhhhcChHHHHHHHHHhhhhHHHHHhhhh
Q 030783 29 LESLRSELADLEDREAHLKAQLEHVDEILRSAR 61 (171)
Q Consensus 29 vesLR~Ela~~eEREa~lkAqLehvDEvLRsar 61 (171)
++.|-..++.-...-..|++||.++-+-|+..+
T Consensus 25 ie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 25 LEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444444444556677777766666654
No 79
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.73 E-value=28 Score=30.21 Aligned_cols=57 Identities=26% Similarity=0.265 Sum_probs=31.0
Q ss_pred CCCcchhheeHHHHHhHH-----------------hhhcChHHHHHHHHHhhhh-------HHHHHhhhhcceeEEEeee
Q 030783 16 SDGQEKVELTATELESLR-----------------SELADLEDREAHLKAQLEH-------VDEILRSARLSGYLYIRTR 71 (171)
Q Consensus 16 ~~~qekvelt~~EvesLR-----------------~Ela~~eEREa~lkAqLeh-------vDEvLRsarlsgYLyiRtR 71 (171)
++.+|+++..++|=|.|+ .+++.+|||-..+..||-+ +-+|=+.+-=||--+.+-+
T Consensus 45 s~k~eel~~~~~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~llrQLPs~tEmp~Ll~dv~q~Gl~sgL~fd~~~ 124 (211)
T COG3167 45 SGKLEELEELEAEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILLRQLPSDTEMPNLLADVNQAGLSSGLTFDLFM 124 (211)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHhhhccCceeeccC
Confidence 567777777776655555 4555555555555555532 2222333334555555554
Q ss_pred c
Q 030783 72 W 72 (171)
Q Consensus 72 W 72 (171)
|
T Consensus 125 p 125 (211)
T COG3167 125 P 125 (211)
T ss_pred C
Confidence 4
No 80
>PRK14158 heat shock protein GrpE; Provisional
Probab=36.63 E-value=36 Score=28.31 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=28.1
Q ss_pred CCCcchhheeHHHHHhHHhhhcChHHHHHHHHHhhhhH
Q 030783 16 SDGQEKVELTATELESLRSELADLEDREAHLKAQLEHV 53 (171)
Q Consensus 16 ~~~qekvelt~~EvesLR~Ela~~eEREa~lkAqLehv 53 (171)
.+..++++-...+++.|..|++++.+|-..++|..+|.
T Consensus 36 ~~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~ 73 (194)
T PRK14158 36 VAAADRIKELEEALAAKEAEAAANWDKYLRERADLENY 73 (194)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666778888888888888877777877775
No 81
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=36.60 E-value=19 Score=21.59 Aligned_cols=16 Identities=38% Similarity=0.715 Sum_probs=12.7
Q ss_pred HHHHhHHhhhcChHHH
Q 030783 27 TELESLRSELADLEDR 42 (171)
Q Consensus 27 ~EvesLR~Ela~~eER 42 (171)
.|++.||+.|.|+|-+
T Consensus 1 ~E~~rlr~rI~dLer~ 16 (23)
T PF04508_consen 1 REMNRLRNRISDLERQ 16 (23)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 3788999999888654
No 82
>PRK14143 heat shock protein GrpE; Provisional
Probab=36.49 E-value=34 Score=29.23 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=27.9
Q ss_pred CcchhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHH
Q 030783 18 GQEKVELTATELESLRSELADLEDREAHLKAQLEHVD 54 (171)
Q Consensus 18 ~qekvelt~~EvesLR~Ela~~eEREa~lkAqLehvD 54 (171)
..++++-..++++.|+.|++++.+|-..++|..+|.-
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~R 101 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFR 101 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777888889898888887777777777754
No 83
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=36.48 E-value=40 Score=26.67 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhcc
Q 030783 40 EDREAHLKAQLEHVDEILRSARLS 63 (171)
Q Consensus 40 eEREa~lkAqLehvDEvLRsarls 63 (171)
.++.+++.+++..+...|++|++.
T Consensus 53 k~~q~~~e~RI~~L~~~L~~A~ii 76 (158)
T PRK05892 53 ADELARLDDRINELDRRLRTGPTP 76 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhCEEe
Confidence 446778889999999999999883
No 84
>PRK04325 hypothetical protein; Provisional
Probab=35.99 E-value=71 Score=22.62 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=23.2
Q ss_pred HHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhhhhc
Q 030783 27 TELESLRSELADLEDREAHLKAQLEHVDEILRSARL 62 (171)
Q Consensus 27 ~EvesLR~Ela~~eEREa~lkAqLehvDEvLRsarl 62 (171)
.-+|.|-..++.-...-..|++||.++-+-|++++-
T Consensus 23 ~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~ 58 (74)
T PRK04325 23 DLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANP 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555555555555556777888888777777653
No 85
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=35.06 E-value=43 Score=28.72 Aligned_cols=43 Identities=28% Similarity=0.377 Sum_probs=25.9
Q ss_pred CCCcchhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHh
Q 030783 16 SDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILR 58 (171)
Q Consensus 16 ~~~qekvelt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLR 58 (171)
..++++++-..+|+.++..+|+.....-+.+++|++.+++-+.
T Consensus 205 ~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~ 247 (325)
T PF08317_consen 205 SCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIE 247 (325)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666555555566666666665543
No 86
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=34.93 E-value=43 Score=24.84 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=13.3
Q ss_pred HhHHhhhcChHHHHHHHHHhhhhHHHHH
Q 030783 30 ESLRSELADLEDREAHLKAQLEHVDEIL 57 (171)
Q Consensus 30 esLR~Ela~~eEREa~lkAqLehvDEvL 57 (171)
+-|+..++.++++-+.+++.++.+++.+
T Consensus 83 ~~l~~~~~~l~~~~~~l~~~~~~L~~~~ 110 (118)
T cd04776 83 EKIEKRRAELEQQRRDIDAALAELDAAE 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555544444443
No 87
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=34.93 E-value=25 Score=24.97 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=15.8
Q ss_pred eHHHHHhHHhhhcChHHHHHHHHHhhhh
Q 030783 25 TATELESLRSELADLEDREAHLKAQLEH 52 (171)
Q Consensus 25 t~~EvesLR~Ela~~eEREa~lkAqLeh 52 (171)
|+.|.+-++..|+.+.+|-+.|.|||..
T Consensus 48 tREEFd~q~~~L~~~r~kl~~LEarl~~ 75 (79)
T PF04380_consen 48 TREEFDAQKAVLARTREKLEALEARLAA 75 (79)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555544
No 88
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=34.34 E-value=37 Score=26.14 Aligned_cols=76 Identities=13% Similarity=0.234 Sum_probs=46.0
Q ss_pred cccceeeEeeecceeEeEeeeCCCCCCCcceeehh-hhccCCCCccccCCceEEEEEEEe--eccee---eeecccceee
Q 030783 88 DDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDV-VEVASLPSITRENGEMQYCFYILT--RHGLR---IECSSISKIQ 161 (171)
Q Consensus 88 DDWlpRFVVl~G~cif~yL~sTDLsPqdStllsdI-VEvg~lP~~~rEdge~~yaFyIlT--rhGLR---~ECSS~skiQ 161 (171)
..|=-||++++|.-||||=...|..|..++-+.-. .||-+=.|. ....|++-+++ -.|-| +.|. ++-|
T Consensus 18 K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl~gcev~~dv~~----~~~kf~I~l~~ps~~~~r~y~l~cd--sEeq 91 (106)
T cd01237 18 KGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNLKGCEVTPDVNV----AQQKFHIKLLIPTAEGMNEVWLRCD--NEKQ 91 (106)
T ss_pred hhheeEEEEEeCCEEEEEccchhcCCCCeEEEecCceEEcccccc----cccceEEEEecCCccCCeEEEEECC--CHHH
Confidence 35778999999999999966666666666544321 222111111 12358777775 34433 4554 5678
Q ss_pred eeeeeeee
Q 030783 162 VLVILIYL 169 (171)
Q Consensus 162 VdswLs~l 169 (171)
-++|+.|+
T Consensus 92 ya~Wmaa~ 99 (106)
T cd01237 92 YAKWMAAC 99 (106)
T ss_pred HHHHHHHH
Confidence 88887653
No 89
>smart00338 BRLZ basic region leucin zipper.
Probab=33.95 E-value=35 Score=22.58 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=12.0
Q ss_pred HHHHHhHHhhhcChHHHHHHHHHhhhhH
Q 030783 26 ATELESLRSELADLEDREAHLKAQLEHV 53 (171)
Q Consensus 26 ~~EvesLR~Ela~~eEREa~lkAqLehv 53 (171)
..+++.|..|...+..+-++|..++..+
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 90
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=33.90 E-value=42 Score=24.86 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=21.1
Q ss_pred HHHHHhHHhhhcChHHHHHHHHHhhhhHHHHH
Q 030783 26 ATELESLRSELADLEDREAHLKAQLEHVDEIL 57 (171)
Q Consensus 26 ~~EvesLR~Ela~~eEREa~lkAqLehvDEvL 57 (171)
+.++..|+.+++.++.+-+.+.|+++-|+..+
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44555666777777777777777777666554
No 91
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=33.64 E-value=41 Score=23.79 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=18.5
Q ss_pred HHHHHHHhhhhHHHHHhhhhcc
Q 030783 42 REAHLKAQLEHVDEILRSARLS 63 (171)
Q Consensus 42 REa~lkAqLehvDEvLRsarls 63 (171)
=++|.+.-++||+++|+.|-++
T Consensus 24 ~~~Q~~~v~~ni~~~L~~aG~~ 45 (101)
T cd06155 24 VEEQMESIFSKLREILQSNGLS 45 (101)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 4578899999999999998654
No 92
>PRK14155 heat shock protein GrpE; Provisional
Probab=33.54 E-value=45 Score=27.99 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=27.4
Q ss_pred hheeHHHHHhHHhhhcChHHHHHHHHHhhhhHHH
Q 030783 22 VELTATELESLRSELADLEDREAHLKAQLEHVDE 55 (171)
Q Consensus 22 velt~~EvesLR~Ela~~eEREa~lkAqLehvDE 55 (171)
.+-...+++.|+.|++++++|-..++|.++|+-.
T Consensus 15 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RK 48 (208)
T PRK14155 15 ADDAAQEIEALKAEVAALKDQALRYAAEAENTKR 48 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666778999999999999888888888887643
No 93
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=33.49 E-value=68 Score=21.97 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=29.5
Q ss_pred HHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhhh
Q 030783 26 ATELESLRSELADLEDREAHLKAQLEHVDEILRSA 60 (171)
Q Consensus 26 ~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRsa 60 (171)
.+++..|+.++..+...-.+++.++..++.+++.-
T Consensus 4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL 38 (106)
T PF01920_consen 4 QNKFQELNQQLQQLEQQIQQLERQLRELELTLEEL 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999999999888887754
No 94
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=33.46 E-value=59 Score=25.59 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhcc
Q 030783 39 LEDREAHLKAQLEHVDEILRSARLS 63 (171)
Q Consensus 39 ~eEREa~lkAqLehvDEvLRsarls 63 (171)
+.++.+++.+++..+...|+.|++-
T Consensus 50 ak~~~~~le~rI~~L~~~L~~A~ii 74 (156)
T TIGR01461 50 GKKRLREIDRRVRFLTKRLENLKVV 74 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCEEe
Confidence 5567788999999999999999763
No 95
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=33.23 E-value=50 Score=27.29 Aligned_cols=13 Identities=8% Similarity=-0.010 Sum_probs=7.1
Q ss_pred eeehhhhccCCCC
Q 030783 118 VLSDVVEVASLPS 130 (171)
Q Consensus 118 llsdIVEvg~lP~ 130 (171)
+-.-|+.|++-|.
T Consensus 345 ~~g~V~~i~~~~~ 357 (423)
T TIGR01843 345 LNGKVKSISPDTF 357 (423)
T ss_pred ccEEEEEECCCcc
Confidence 4455666665553
No 96
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=33.20 E-value=43 Score=26.08 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=31.7
Q ss_pred eeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHh------hhhcceeEEEee
Q 030783 24 LTATELESLRSELADLEDREAHLKAQLEHVDEILR------SARLSGYLYIRT 70 (171)
Q Consensus 24 lt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLR------sarlsgYLyiRt 70 (171)
.+..|++..+.++..++.+...++++|+...+-++ .|-.+|++-.+.
T Consensus 51 ~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~AP~dG~V~~~~ 103 (265)
T TIGR00999 51 IPRQEFESAEYALEEAQAEVQAAKSELRSAREAKDGSYVEVRSPFDGYITQKS 103 (265)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCeEEEECCCCeEEEEEE
Confidence 45677777777777777777777777765544433 566678876653
No 97
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=32.92 E-value=65 Score=25.41 Aligned_cols=53 Identities=19% Similarity=0.424 Sum_probs=38.3
Q ss_pred ccceeeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCCCcc-----------ccCCceEEEEEEEe
Q 030783 89 DWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSIT-----------RENGEMQYCFYILT 146 (171)
Q Consensus 89 DWlpRFVVl~G~cif~yL~sTDLsPqdStllsdIVEvg~lP~~~-----------rEdge~~yaFyIlT 146 (171)
-|--+|||+.+.-||||-...|-+.|...+ +.+.+. .|. -...|.-|-|.|++
T Consensus 19 gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~---vldl~~--~fhv~~V~asDVi~a~~kDiP~IF~I~~ 82 (112)
T cd01242 19 GWKKQYVVVSSRKILFYNDEQDKENSTPSM---ILDIDK--LFHVRPVTQGDVYRADAKEIPKIFQILY 82 (112)
T ss_pred CceEEEEEEeCCEEEEEecCccccCCCcEE---EEEccc--eeeeecccHHHeeecCcccCCeEEEEEe
Confidence 599999999999999999888876665444 444443 222 13456678899987
No 98
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=32.69 E-value=45 Score=23.46 Aligned_cols=34 Identities=18% Similarity=0.467 Sum_probs=23.5
Q ss_pred chhheeHHHHHhHHhhhcChHHHHHHHHHhhhhH
Q 030783 20 EKVELTATELESLRSELADLEDREAHLKAQLEHV 53 (171)
Q Consensus 20 ekvelt~~EvesLR~Ela~~eEREa~lkAqLehv 53 (171)
.||.-...+|..+|.++..+.+--+.-..+|+|+
T Consensus 17 ~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 17 SKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666677788888888887777555555555554
No 99
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=32.45 E-value=39 Score=22.35 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=9.3
Q ss_pred HHHHHhHHhhhcChHHHHHHHHH
Q 030783 26 ATELESLRSELADLEDREAHLKA 48 (171)
Q Consensus 26 ~~EvesLR~Ela~~eEREa~lkA 48 (171)
..|.+.|+.++..+...-..|++
T Consensus 39 ~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 39 ESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444443333333
No 100
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=31.95 E-value=54 Score=23.30 Aligned_cols=31 Identities=35% Similarity=0.427 Sum_probs=26.3
Q ss_pred cchhheeHHHHHhHHhhhcChHHHHHHHHHh
Q 030783 19 QEKVELTATELESLRSELADLEDREAHLKAQ 49 (171)
Q Consensus 19 qekvelt~~EvesLR~Ela~~eEREa~lkAq 49 (171)
.|-.+.-.+.+..+|..|+.+|.|-+.|.||
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556778889999999999999999988875
No 101
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=31.82 E-value=25 Score=26.46 Aligned_cols=36 Identities=33% Similarity=0.528 Sum_probs=20.7
Q ss_pred CcchhheeHHHHHhHHhhhcChHHHHHHHHHhhhhH
Q 030783 18 GQEKVELTATELESLRSELADLEDREAHLKAQLEHV 53 (171)
Q Consensus 18 ~qekvelt~~EvesLR~Ela~~eEREa~lkAqLehv 53 (171)
.+++++-..++++.|+.+++++.++-..+.|.++|+
T Consensus 9 ~~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~ 44 (165)
T PF01025_consen 9 EDEEIEELEEELEELEKEIEELKERLLRLQAEFENY 44 (165)
T ss_dssp CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556666666666666655555555554
No 102
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=31.77 E-value=65 Score=24.83 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=30.8
Q ss_pred hhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 030783 21 KVELTATELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (171)
Q Consensus 21 kvelt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRs 59 (171)
+.+....+++.+...++.+|+|-+++++-++.+|...|-
T Consensus 75 ~~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~ 113 (134)
T cd04779 75 EQREVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRM 113 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888888999999999998888888876664
No 103
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=31.57 E-value=63 Score=25.04 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=27.4
Q ss_pred HHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 030783 27 TELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (171)
Q Consensus 27 ~EvesLR~Ela~~eEREa~lkAqLehvDEvLRs 59 (171)
.-++.+..|+..++.|...++.+++.|-+.++.
T Consensus 163 ~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~ 195 (236)
T PF09325_consen 163 DKVEQAENEIEEAERRVEQAKDEFEEISENIKK 195 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677888889999999999999999887764
No 104
>PF14301 DUF4376: Domain of unknown function (DUF4376)
Probab=30.95 E-value=66 Score=22.31 Aligned_cols=43 Identities=30% Similarity=0.382 Sum_probs=31.2
Q ss_pred CCCccccCCCCcchhheeHHHHHhHHhhhcChH----HHHHHHHHhhhh
Q 030783 8 RGLPWVSSSDGQEKVELTATELESLRSELADLE----DREAHLKAQLEH 52 (171)
Q Consensus 8 ~~l~W~s~~~~qekvelt~~EvesLR~Ela~~e----EREa~lkAqLeh 52 (171)
..+.|.. .+...|.+|++++..+-..+..-. .|+..||++++.
T Consensus 55 ~~~~W~~--adn~~v~lt~~~l~~~~~a~~~~~~~~~~~~~~lk~~i~a 101 (111)
T PF14301_consen 55 ESFFWKD--ADNSFVPLTAEQLIALAQAMAAHVQACFQRARALKAAIEA 101 (111)
T ss_pred CceeccC--CCCCEeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568874 444449999999999888876543 567788887764
No 105
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=30.89 E-value=45 Score=28.95 Aligned_cols=44 Identities=34% Similarity=0.433 Sum_probs=32.9
Q ss_pred CcchhheeHHHHHhHHhhhcChHHHHHHHH----HhhhhHHHHHhhhh
Q 030783 18 GQEKVELTATELESLRSELADLEDREAHLK----AQLEHVDEILRSAR 61 (171)
Q Consensus 18 ~qekvelt~~EvesLR~Ela~~eEREa~lk----AqLehvDEvLRsar 61 (171)
..++.-|+.+|-|.||.||+..||--.-|+ |.=.|.-|+=|---
T Consensus 35 ~s~~~~LSe~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLG 82 (208)
T KOG4010|consen 35 ASEFEALSEEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLG 82 (208)
T ss_pred hhHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 346778999999999999999999766554 44457777666443
No 106
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.77 E-value=59 Score=28.52 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=23.3
Q ss_pred hHHhhhcChHHHHHHHHHhhhhHHHHHhhhh
Q 030783 31 SLRSELADLEDREAHLKAQLEHVDEILRSAR 61 (171)
Q Consensus 31 sLR~Ela~~eEREa~lkAqLehvDEvLRsar 61 (171)
-|+.|+.+++++.++|+++.+..+.-+.+.+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777777777776666
No 107
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=30.74 E-value=59 Score=30.94 Aligned_cols=42 Identities=31% Similarity=0.480 Sum_probs=34.1
Q ss_pred chhheeHHHHHhHHhhhcChHHHHHHHH-HhhhhHHHHHhhhh
Q 030783 20 EKVELTATELESLRSELADLEDREAHLK-AQLEHVDEILRSAR 61 (171)
Q Consensus 20 ekvelt~~EvesLR~Ela~~eEREa~lk-AqLehvDEvLRsar 61 (171)
+-+||-.+|+-.|..|+|.+|||-|... .+-.+|-|.+.|.+
T Consensus 317 dlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscq 359 (455)
T KOG3850|consen 317 DLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQ 359 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999998654 56678888887753
No 108
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=30.33 E-value=62 Score=27.87 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=26.6
Q ss_pred eHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 030783 25 TATELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (171)
Q Consensus 25 t~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRs 59 (171)
...++++||.|...++++-..+++|++.-|.....
T Consensus 37 l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~ 71 (308)
T PF11382_consen 37 LEDQFDSLREENDELRAELDALQAQLNAADQFIAA 71 (308)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888888888777776654
No 109
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=30.29 E-value=42 Score=28.93 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=34.9
Q ss_pred CCcchhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHH
Q 030783 17 DGQEKVELTATELESLRSELADLEDREAHLKAQLEHVD 54 (171)
Q Consensus 17 ~~qekvelt~~EvesLR~Ela~~eEREa~lkAqLehvD 54 (171)
+-+|||.-...+-+.|..+|+.+|.|-+.-++||+...
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n 214 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMN 214 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999998764
No 110
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=30.01 E-value=34 Score=33.20 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=28.0
Q ss_pred eeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHH
Q 030783 24 LTATELESLRSELADLEDREAHLKAQLEHVDEI 56 (171)
Q Consensus 24 lt~~EvesLR~Ela~~eEREa~lkAqLehvDEv 56 (171)
=..+||+.||+||......|..|+.|+..++.-
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~ 454 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNN 454 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Confidence 357899999999999999999999996665543
No 111
>PRK02119 hypothetical protein; Provisional
Probab=29.60 E-value=65 Score=22.83 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=20.8
Q ss_pred HHHhHHhhhcChHHHHHHHHHhhhhHHHHH
Q 030783 28 ELESLRSELADLEDREAHLKAQLEHVDEIL 57 (171)
Q Consensus 28 EvesLR~Ela~~eEREa~lkAqLehvDEvL 57 (171)
|.+.+-.-|.++|+|-|+...-++.+++++
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v 32 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQAL 32 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788888887777777776665
No 112
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=29.57 E-value=46 Score=27.12 Aligned_cols=28 Identities=39% Similarity=0.487 Sum_probs=23.0
Q ss_pred heeHHHHHhHHhhhcChHHHHHHHHHhh
Q 030783 23 ELTATELESLRSELADLEDREAHLKAQL 50 (171)
Q Consensus 23 elt~~EvesLR~Ela~~eEREa~lkAqL 50 (171)
|-+..+++-|+++..+++-|-+.||++|
T Consensus 91 e~l~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 91 ETLEKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678889999999999999999887
No 113
>PRK00846 hypothetical protein; Provisional
Probab=29.40 E-value=1.2e+02 Score=22.24 Aligned_cols=38 Identities=26% Similarity=0.187 Sum_probs=27.3
Q ss_pred HHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhhhhcce
Q 030783 27 TELESLRSELADLEDREAHLKAQLEHVDEILRSARLSG 64 (171)
Q Consensus 27 ~EvesLR~Ela~~eEREa~lkAqLehvDEvLRsarlsg 64 (171)
.=+|.|-..++.....-..|+.||.++-+=|+.++-|+
T Consensus 27 ~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 27 QALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34566666666666666778888888888888887554
No 114
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.25 E-value=64 Score=24.81 Aligned_cols=27 Identities=37% Similarity=0.574 Sum_probs=13.1
Q ss_pred HHHHHhHHhhhcChHHHHHHHHHhhhh
Q 030783 26 ATELESLRSELADLEDREAHLKAQLEH 52 (171)
Q Consensus 26 ~~EvesLR~Ela~~eEREa~lkAqLeh 52 (171)
..|+..|+.|++.++.....|.++|..
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~ 104 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELAS 104 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444444433
No 115
>COG1342 Predicted DNA-binding proteins [General function prediction only]
Probab=29.15 E-value=41 Score=26.22 Aligned_cols=51 Identities=35% Similarity=0.380 Sum_probs=30.9
Q ss_pred ccccCCCCcchhheeHHHHHhHHh-hhcChHHHHHHHHHhhh--hHHHHHhhhh
Q 030783 11 PWVSSSDGQEKVELTATELESLRS-ELADLEDREAHLKAQLE--HVDEILRSAR 61 (171)
Q Consensus 11 ~W~s~~~~qekvelt~~EvesLR~-Ela~~eEREa~lkAqLe--hvDEvLRsar 61 (171)
|-+.+....+.|+||..|+|.||- .+.++..-||-++-+.. -+=..|.|||
T Consensus 21 P~g~~~~~~~~V~lt~eElEAlRLvD~~~l~QeeAA~rMgISr~Tfwr~l~sAR 74 (99)
T COG1342 21 PEGVPLEELEPVILTIEELEALRLVDYEGLTQEEAALRMGISRQTFWRLLTSAR 74 (99)
T ss_pred cCCCCcccCcceeecHHHHHHHHHHhHhhccHHHHHHHhcccHHHHHHHHHHHH
Confidence 445556668999999999999993 33344445554443321 2334455554
No 116
>PRK00736 hypothetical protein; Provisional
Probab=29.09 E-value=1.3e+02 Score=21.01 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=25.1
Q ss_pred eeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhhhhc
Q 030783 24 LTATELESLRSELADLEDREAHLKAQLEHVDEILRSARL 62 (171)
Q Consensus 24 lt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRsarl 62 (171)
....-+|.|-..++.-...-..|+.||..+-+-|+++.-
T Consensus 16 fqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 16 EQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333445666666666555556777888888777777553
No 117
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=28.91 E-value=55 Score=20.61 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=17.4
Q ss_pred hhhHHHHHhhhhcceeEEEeee
Q 030783 50 LEHVDEILRSARLSGYLYIRTR 71 (171)
Q Consensus 50 LehvDEvLRsarlsgYLyiRtR 71 (171)
..+.+|++.-|+=.||=++...
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft~~e 47 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFTEEE 47 (49)
T ss_pred cCCHHHHHHHHHHcCCCCCHHH
Confidence 3478999999999999776443
No 118
>PHA01750 hypothetical protein
Probab=28.87 E-value=50 Score=24.72 Aligned_cols=32 Identities=28% Similarity=0.601 Sum_probs=26.9
Q ss_pred heeHHHHHhHHhhhcChHHHHHHHHHhhhhHH
Q 030783 23 ELTATELESLRSELADLEDREAHLKAQLEHVD 54 (171)
Q Consensus 23 elt~~EvesLR~Ela~~eEREa~lkAqLehvD 54 (171)
|+-..|+..||.||.++.-|..++..|.+.+-
T Consensus 38 eIV~~ELdNL~~ei~~~kikqDnl~~qv~eik 69 (75)
T PHA01750 38 EIVNSELDNLKTEIEELKIKQDELSRQVEEIK 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45667999999999999999998888877654
No 119
>PRK14144 heat shock protein GrpE; Provisional
Probab=28.75 E-value=54 Score=27.55 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=27.9
Q ss_pred CcchhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHH
Q 030783 18 GQEKVELTATELESLRSELADLEDREAHLKAQLEHVD 54 (171)
Q Consensus 18 ~qekvelt~~EvesLR~Ela~~eEREa~lkAqLehvD 54 (171)
++++++-..++++.|..|++++.+|-..+.|..+|+-
T Consensus 43 ~~~~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~R 79 (199)
T PRK14144 43 GHPSYTALEEQLTLAEQKAHENWEKSVRALAELENVR 79 (199)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667888888898888888777777777754
No 120
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=28.74 E-value=34 Score=32.45 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=10.3
Q ss_pred EEEeeecccCCCC
Q 030783 66 LYIRTRWKPLPGE 78 (171)
Q Consensus 66 LyiRtRW~aLpgE 78 (171)
.=.|||--.+-+.
T Consensus 70 ~DfRt~~Dsi~yk 82 (489)
T PF11853_consen 70 GDFRTRYDSIQYK 82 (489)
T ss_pred eEEEEEEeccccc
Confidence 4568888888888
No 121
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=28.38 E-value=23 Score=30.39 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=15.7
Q ss_pred chhheeHHHHHhHHhhhcChH
Q 030783 20 EKVELTATELESLRSELADLE 40 (171)
Q Consensus 20 ekvelt~~EvesLR~Ela~~e 40 (171)
.||..+..|+..||+.||.+=
T Consensus 122 qKIsALEdELs~LRaQIA~IV 142 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIV 142 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477777788888888887654
No 122
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=28.21 E-value=21 Score=27.36 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=8.8
Q ss_pred hhhcChHHHHHHHHHhhhhH
Q 030783 34 SELADLEDREAHLKAQLEHV 53 (171)
Q Consensus 34 ~Ela~~eEREa~lkAqLehv 53 (171)
.+++.++++...|..+++..
T Consensus 112 ~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 112 ERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 123
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=28.19 E-value=81 Score=22.21 Aligned_cols=34 Identities=32% Similarity=0.475 Sum_probs=26.2
Q ss_pred heeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHH
Q 030783 23 ELTATELESLRSELADLEDREAHLKAQLEHVDEI 56 (171)
Q Consensus 23 elt~~EvesLR~Ela~~eEREa~lkAqLehvDEv 56 (171)
+....+++.|+.+|..++.+.+.+.++++-+..-
T Consensus 66 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 66 ESDSPELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888887765543
No 124
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.10 E-value=40 Score=29.26 Aligned_cols=14 Identities=36% Similarity=0.446 Sum_probs=9.1
Q ss_pred EEeecceeeeeccc
Q 030783 144 ILTRHGLRIECSSI 157 (171)
Q Consensus 144 IlTrhGLR~ECSS~ 157 (171)
|+|-|.+.+-=++.
T Consensus 163 IiTl~d~~i~~~~~ 176 (211)
T COG3167 163 IITLHDLKIKPVPE 176 (211)
T ss_pred eeeeecceeccCCC
Confidence 77777776655444
No 125
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=28.06 E-value=69 Score=24.64 Aligned_cols=23 Identities=9% Similarity=0.442 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhc
Q 030783 40 EDREAHLKAQLEHVDEILRSARL 62 (171)
Q Consensus 40 eEREa~lkAqLehvDEvLRsarl 62 (171)
.++.+++.+++..+.+.|..|+.
T Consensus 53 ~~~~~~~~~ri~~l~~~L~~a~i 75 (157)
T PRK00226 53 KEEQGFIEGRIRELEDKLSNAEV 75 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHhCee
Confidence 44556778888889999998875
No 126
>PRK14154 heat shock protein GrpE; Provisional
Probab=27.99 E-value=54 Score=27.74 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=25.2
Q ss_pred hhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHH
Q 030783 21 KVELTATELESLRSELADLEDREAHLKAQLEHVD 54 (171)
Q Consensus 21 kvelt~~EvesLR~Ela~~eEREa~lkAqLehvD 54 (171)
+++-+.++++.|+.+++++.++-..++|..+|.-
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyR 86 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLR 86 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888888888777777777753
No 127
>PF14019 DUF4235: Protein of unknown function (DUF4235)
Probab=27.96 E-value=28 Score=24.74 Aligned_cols=20 Identities=40% Similarity=0.793 Sum_probs=15.9
Q ss_pred eecccCCCCCCCCCCCCccc
Q 030783 70 TRWKPLPGEPPPIDDTDVDD 89 (171)
Q Consensus 70 tRW~aLpgEpppiDDtdVDD 89 (171)
.-|...-|++||.|.+|-|.
T Consensus 22 ~~W~~~tg~~~P~~~~d~~~ 41 (78)
T PF14019_consen 22 QVWKKVTGREPPKDPDDPDR 41 (78)
T ss_pred HHHHHHcCCCCCCCCCCccc
Confidence 35888899999988887664
No 128
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=27.83 E-value=90 Score=25.45 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=38.6
Q ss_pred eHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhhhhcceeEEEe
Q 030783 25 TATELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGYLYIR 69 (171)
Q Consensus 25 t~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRsarlsgYLyiR 69 (171)
+..|+-.+..||++.+..-.++++|+..+|+-...+.++=++|-.
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti~i~l~~~ 204 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTITISLYEP 204 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEEEEec
Confidence 567777888889988888899999999999999999998777765
No 129
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=27.52 E-value=65 Score=29.48 Aligned_cols=46 Identities=30% Similarity=0.414 Sum_probs=32.8
Q ss_pred CCCCcchhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhhhh
Q 030783 15 SSDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSAR 61 (171)
Q Consensus 15 ~~~~qekvelt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRsar 61 (171)
+++.+.++.-+++|++.|+.|++..+.--.-+ .+|..+|+.|++++
T Consensus 71 ~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L-~~L~~i~~~l~~~~ 116 (593)
T PF06248_consen 71 ENEIQPQLRDAAEELQELKRELEENEQLLEVL-EQLQEIDELLEEVE 116 (593)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 35567777888888888888887766544433 37777888777665
No 130
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=27.36 E-value=99 Score=26.21 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=30.0
Q ss_pred eHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhhhhcceeEE
Q 030783 25 TATELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGYLY 67 (171)
Q Consensus 25 t~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRsarlsgYLy 67 (171)
+..+++.|+.++..+......++.+++++-+-+...+..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIV 46 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 3456777777777776666677788888877777777666543
No 131
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=27.29 E-value=9.8 Score=30.03 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=16.6
Q ss_pred HHhhhcChHHHHHHHHHhhhhHHHHHhhh
Q 030783 32 LRSELADLEDREAHLKAQLEHVDEILRSA 60 (171)
Q Consensus 32 LR~Ela~~eEREa~lkAqLehvDEvLRsa 60 (171)
|+..++.++++-+.|+++...+..++...
T Consensus 79 L~~~~~~l~~ei~~L~~~~~~l~~ll~~~ 107 (172)
T cd04790 79 LRRRLAELNREIQRLRQQQRAIATLLKQP 107 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555556666666666665443
No 132
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=26.86 E-value=83 Score=26.86 Aligned_cols=51 Identities=29% Similarity=0.451 Sum_probs=32.7
Q ss_pred heeHHHHHhHHhhhcChHHHHHHHHHhhhh---HHHHHhhhhcc---eeEEEeeecc
Q 030783 23 ELTATELESLRSELADLEDREAHLKAQLEH---VDEILRSARLS---GYLYIRTRWK 73 (171)
Q Consensus 23 elt~~EvesLR~Ela~~eEREa~lkAqLeh---vDEvLRsarls---gYLyiRtRW~ 73 (171)
+++-+||+.+|.|-+....|+...+++.+. ..+||..--|- +=.-++.||.
T Consensus 149 ~~Ll~ELekIKkER~ee~~~~e~~~~~~~~~~~~~~~~~~NpLl~~~~~~~~kr~W~ 205 (244)
T PF04889_consen 149 AALLRELEKIKKERAEEKARKEEEKAEEEEKEREENILSGNPLLNASGDFKVKRRWD 205 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCCccccCCc
Confidence 677799999999998888887777555443 34455443331 1223556663
No 133
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.80 E-value=39 Score=33.71 Aligned_cols=42 Identities=36% Similarity=0.471 Sum_probs=34.8
Q ss_pred CCCCcchhheeHHHHHhHHhhhcChHH-HHHHHHHhhhhHHHH
Q 030783 15 SSDGQEKVELTATELESLRSELADLED-REAHLKAQLEHVDEI 56 (171)
Q Consensus 15 ~~~~qekvelt~~EvesLR~Ela~~eE-REa~lkAqLehvDEv 56 (171)
+.+.++-|.+..+|+|.|++++-.++. +..++-++|+|+|=.
T Consensus 270 ~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~ 312 (716)
T KOG4593|consen 270 LRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLL 312 (716)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 346678899999999999999999887 456778999999844
No 134
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=26.57 E-value=48 Score=29.45 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=12.7
Q ss_pred hhhcChHHHHHHHHHhhhhH
Q 030783 34 SELADLEDREAHLKAQLEHV 53 (171)
Q Consensus 34 ~Ela~~eEREa~lkAqLehv 53 (171)
.||.-+.+-.++||||||-|
T Consensus 235 eei~fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 235 EEIEFLKETNRQLKAQLEGI 254 (259)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34444555557888888765
No 135
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=26.06 E-value=96 Score=23.33 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=27.5
Q ss_pred hheeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhhhh
Q 030783 22 VELTATELESLRSELADLEDREAHLKAQLEHVDEILRSAR 61 (171)
Q Consensus 22 velt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRsar 61 (171)
+.-..+|+++++..+++++++...++.-|+..=++.+-|+
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq 44 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQ 44 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777777777777777777776666666553
No 136
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=26.06 E-value=78 Score=24.02 Aligned_cols=40 Identities=30% Similarity=0.469 Sum_probs=33.9
Q ss_pred chhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 030783 20 EKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (171)
Q Consensus 20 ekvelt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRs 59 (171)
+++.-+.+|++.|+..+..+.|--+.|+-.-+|+-+.|.-
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999998888888777653
No 137
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=25.89 E-value=1.3e+02 Score=24.38 Aligned_cols=47 Identities=36% Similarity=0.575 Sum_probs=28.7
Q ss_pred hHHhhhcChHHHHHHHHHhhhhHHHHHhhhhcceeEEEeeecccCCCCCCC
Q 030783 31 SLRSELADLEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLPGEPPP 81 (171)
Q Consensus 31 sLR~Ela~~eEREa~lkAqLehvDEvLRsarlsgYLyiRtRW~aLpgEppp 81 (171)
-||..-.++|+|-++--.+|..| -+|-|.|.|=| ..-.--.|||.||
T Consensus 36 ~Lk~rk~~Lee~L~~kl~ELk~l--ClrEAELTG~L--P~E~PL~pGEk~P 82 (138)
T PF11819_consen 36 ALKKRKQALEERLAQKLEELKKL--CLREAELTGEL--PPEYPLEPGEKPP 82 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhccC--CCccCCCCCCCCC
Confidence 34555555555554444444443 47899999965 2333567898877
No 138
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.55 E-value=1e+02 Score=22.95 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=22.3
Q ss_pred HHHHhHHhhhcChHHHHHHHHHhhhhHHHHHh
Q 030783 27 TELESLRSELADLEDREAHLKAQLEHVDEILR 58 (171)
Q Consensus 27 ~EvesLR~Ela~~eEREa~lkAqLehvDEvLR 58 (171)
+.++.+..+|..+|++....+..++.|.+.+.
T Consensus 145 ~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~ 176 (218)
T cd07596 145 AKVEELEEELEEAESALEEARKRYEEISERLK 176 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777776665543
No 139
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=25.42 E-value=90 Score=24.05 Aligned_cols=40 Identities=23% Similarity=0.403 Sum_probs=35.5
Q ss_pred chhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 030783 20 EKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (171)
Q Consensus 20 ekvelt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRs 59 (171)
+++.-+-+|++.|+..++.+.|.-+.|+-.-+|+-+.|..
T Consensus 15 ~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 15 QNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999888874
No 140
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=25.36 E-value=66 Score=26.70 Aligned_cols=21 Identities=48% Similarity=0.601 Sum_probs=17.5
Q ss_pred hheeHHHHHhHHhhhcChHHH
Q 030783 22 VELTATELESLRSELADLEDR 42 (171)
Q Consensus 22 velt~~EvesLR~Ela~~eER 42 (171)
..|+.+|-|.||.||+..||-
T Consensus 24 ~~LsEeE~eeLr~EL~KvEeE 44 (162)
T PF04201_consen 24 EGLSEEEREELRSELAKVEEE 44 (162)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 478889999999999888764
No 141
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=25.36 E-value=83 Score=24.80 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhc
Q 030783 39 LEDREAHLKAQLEHVDEILRSARL 62 (171)
Q Consensus 39 ~eEREa~lkAqLehvDEvLRsarl 62 (171)
+.++.+.+.+++..++..|+.|++
T Consensus 52 Ak~~~~~~e~rI~~L~~~L~~A~i 75 (157)
T PRK01885 52 GKKRLREIDRRVRFLTKRLENLKV 75 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHccCEE
Confidence 344567888899999999999886
No 142
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=25.35 E-value=1.6e+02 Score=25.19 Aligned_cols=65 Identities=22% Similarity=0.239 Sum_probs=36.7
Q ss_pred eHHHHHhHHhhhcChHHHHHH----HHHhhhhHHHHHhhhhc-ceeEEEeeecccCCCCCCCCCCCCccccceeeEeeec
Q 030783 25 TATELESLRSELADLEDREAH----LKAQLEHVDEILRSARL-SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHG 99 (171)
Q Consensus 25 t~~EvesLR~Ela~~eEREa~----lkAqLehvDEvLRsarl-sgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G 99 (171)
+.+|-+.||.|++.+.++... ++++.+.+-+.|....- ..|- +-.| +--.+-+.|.-.+++=.|
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~~~~~~-i~A~----------Vi~r~~~~~~~~i~IdkG 139 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLSSDEYK-ISAE----------VIYLNYDNYSTQVVINKG 139 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCc-eEEE----------EEEeCCCccccEEEEcCc
Confidence 456777888887766333322 66666677777766542 2222 2222 222344678877776665
Q ss_pred c
Q 030783 100 S 100 (171)
Q Consensus 100 ~ 100 (171)
+
T Consensus 140 s 140 (283)
T TIGR00219 140 F 140 (283)
T ss_pred c
Confidence 4
No 143
>PRK14127 cell division protein GpsB; Provisional
Probab=25.13 E-value=50 Score=25.45 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=25.5
Q ss_pred cchhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHHH
Q 030783 19 QEKVELTATELESLRSELADLEDREAHLKAQLEHVDE 55 (171)
Q Consensus 19 qekvelt~~EvesLR~Ela~~eEREa~lkAqLehvDE 55 (171)
++=...-+.+.|.|-.|++.++++-+.|+++|+..-.
T Consensus 29 D~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 29 DKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455667777777777787777777777766544
No 144
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=25.06 E-value=66 Score=25.48 Aligned_cols=93 Identities=16% Similarity=0.348 Sum_probs=56.8
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCC--Cc-cccCCce
Q 030783 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLP--SI-TRENGEM 138 (171)
Q Consensus 62 lsgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~cif~yL~sTDLsPqdStllsdIVEvg~lP--~~-~rEdge~ 138 (171)
+.|+||+|. +|- .-|=.+|+||+++=|||.=.++-=+|-|=+.+.+.-+...-- ++ +....-|
T Consensus 2 ~~g~LylK~-----~gk---------KsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPT 67 (114)
T cd01259 2 MEGPLYLKA-----DGK---------KSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPT 67 (114)
T ss_pred ccceEEEcc-----CCC---------ccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCC
Confidence 578999884 232 369999999999999999988877777777776665543111 11 1122233
Q ss_pred EEEEEEE-------eecceeeeecccceeeeeeeeeee
Q 030783 139 QYCFYIL-------TRHGLRIECSSISKIQVLVILIYL 169 (171)
Q Consensus 139 ~yaFyIl-------TrhGLR~ECSS~skiQVdswLs~l 169 (171)
-|+|-+= ..+.+++-|+-. +-+..+|+++|
T Consensus 68 d~~F~~K~~~~q~~~s~~ik~lCaeD-e~t~~~W~ta~ 104 (114)
T cd01259 68 DYCFGFKAVGDQSKGSQSIKYLCAED-LPTLDRWLTAI 104 (114)
T ss_pred CceEEEeccccCcccchhheeeccCC-HHHHHHHHHHH
Confidence 4555441 234555556532 23455666654
No 145
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=25.05 E-value=93 Score=25.24 Aligned_cols=39 Identities=26% Similarity=0.452 Sum_probs=30.9
Q ss_pred heeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhhhh
Q 030783 23 ELTATELESLRSELADLEDREAHLKAQLEHVDEILRSAR 61 (171)
Q Consensus 23 elt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRsar 61 (171)
|-+..|.+.++.||..+...-++.-++.+.+...-|.||
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR 61 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQAR 61 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999999888888887777777777777765
No 146
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.91 E-value=1.1e+02 Score=28.35 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=39.6
Q ss_pred CCCCcchhheeHHHHHhHHhhhcChHHHHHHHHHhhh--------------hHHHHHhhhhcceeEEEeeeccc
Q 030783 15 SSDGQEKVELTATELESLRSELADLEDREAHLKAQLE--------------HVDEILRSARLSGYLYIRTRWKP 74 (171)
Q Consensus 15 ~~~~qekvelt~~EvesLR~Ela~~eEREa~lkAqLe--------------hvDEvLRsarlsgYLyiRtRW~a 74 (171)
+...++.++-..+|++.+++|+++++++-+.++.+.+ ..=+++....-+++.+.=+-|.+
T Consensus 210 ~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~l~GWvP 283 (646)
T PRK05771 210 EGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGWVP 283 (646)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEee
Confidence 3455777777888888888888887766555444221 12234555667888888888874
No 147
>PF08690 GET2: GET complex subunit GET2; InterPro: IPR014802 This family corresponds to the GET complex subunit GET2. The GET complex is involved in the retrieval of ER resident proteins from the Golgi []. ; PDB: 3SJD_D 3ZS9_C.
Probab=24.73 E-value=83 Score=27.65 Aligned_cols=21 Identities=52% Similarity=0.681 Sum_probs=15.4
Q ss_pred heeHHHHHhHHhhhcChHHHHHHHHH
Q 030783 23 ELTATELESLRSELADLEDREAHLKA 48 (171)
Q Consensus 23 elt~~EvesLR~Ela~~eEREa~lkA 48 (171)
||++||-..||.| .|||.+||
T Consensus 1 els~aEkrRLrRE-----RReAKi~~ 21 (302)
T PF08690_consen 1 ELSEAEKRRLRRE-----RREAKIKA 21 (302)
T ss_dssp ---HHHHHHHHHH-----HHHHHHHC
T ss_pred CCCHHHHHHHHHH-----HHHHHHHC
Confidence 7999999999975 79999974
No 148
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=24.46 E-value=1e+02 Score=23.54 Aligned_cols=29 Identities=14% Similarity=0.346 Sum_probs=18.5
Q ss_pred HHhHHhhhcChHHHHHHHHHhhhhHHHHH
Q 030783 29 LESLRSELADLEDREAHLKAQLEHVDEIL 57 (171)
Q Consensus 29 vesLR~Ela~~eEREa~lkAqLehvDEvL 57 (171)
-|.|+.=-..+++..++++.+|+++|+.+
T Consensus 71 kEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 71 KEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444333445666777888888888765
No 149
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.31 E-value=79 Score=27.45 Aligned_cols=30 Identities=37% Similarity=0.450 Sum_probs=13.9
Q ss_pred heeHHHHHhHHhhhcChHHHHHHHHHhhhh
Q 030783 23 ELTATELESLRSELADLEDREAHLKAQLEH 52 (171)
Q Consensus 23 elt~~EvesLR~Ela~~eEREa~lkAqLeh 52 (171)
+-+..|-+.|..||..+|.-++++.++++.
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555444444444443
No 150
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=24.27 E-value=74 Score=28.67 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=26.4
Q ss_pred eHHHHHhHHhhhcChHHHHHHHHHhhhhHH
Q 030783 25 TATELESLRSELADLEDREAHLKAQLEHVD 54 (171)
Q Consensus 25 t~~EvesLR~Ela~~eEREa~lkAqLehvD 54 (171)
|+.||+.+-..|.++|.|-..||.+|+..+
T Consensus 287 TRsElDe~~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 287 TRSELDEAHQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788999999999999999999999988765
No 151
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.60 E-value=1.1e+02 Score=24.29 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=6.5
Q ss_pred eHHHHHhHHhhhcChHH
Q 030783 25 TATELESLRSELADLED 41 (171)
Q Consensus 25 t~~EvesLR~Ela~~eE 41 (171)
...+++.+|.++....+
T Consensus 75 l~~~i~~~~~~i~~~r~ 91 (302)
T PF10186_consen 75 LRERIERLRKRIEQKRE 91 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 152
>PRK14159 heat shock protein GrpE; Provisional
Probab=23.48 E-value=82 Score=25.80 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=25.0
Q ss_pred heeHHHHHhHHhhhcChHHHHHHHHHhhhhHH
Q 030783 23 ELTATELESLRSELADLEDREAHLKAQLEHVD 54 (171)
Q Consensus 23 elt~~EvesLR~Ela~~eEREa~lkAqLehvD 54 (171)
++-..+++.|+.|++++.++-..++|..+|.-
T Consensus 26 ~~~~~~i~~l~~e~~elkd~~lR~~AdfeN~r 57 (176)
T PRK14159 26 NIEDVEQNKLQKDYDELKDKYMRANAEFENIK 57 (176)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888888888888888888887763
No 153
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=23.30 E-value=1.6e+02 Score=25.22 Aligned_cols=66 Identities=30% Similarity=0.382 Sum_probs=45.1
Q ss_pred eHHHHHhHHhhhcChHHH---HHHHHHhhhhHHHHHhhhhcc-eeEEEeeecccCCCCCCCCCCCCccccceeeEeeecc
Q 030783 25 TATELESLRSELADLEDR---EAHLKAQLEHVDEILRSARLS-GYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGS 100 (171)
Q Consensus 25 t~~EvesLR~Ela~~eER---Ea~lkAqLehvDEvLRsarls-gYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~ 100 (171)
++.|-|.||.|++.++.+ -.+|+++..++-+.|-++.-+ .|=++-++=.. .+.|.|-.+.++-.|+
T Consensus 71 ~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~~~~~~~~~~a~Vi~----------~~~~~~~~~ivId~Gs 140 (284)
T COG1792 71 LALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKESSSDYDPIAARVIS----------RSPDPWSQTIVIDKGS 140 (284)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccceeeEEEE----------ecCCchhcEEEEecCc
Confidence 567788899888776654 567889999999999888766 46665554322 2344566666666554
No 154
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=23.25 E-value=1e+02 Score=24.23 Aligned_cols=34 Identities=24% Similarity=0.597 Sum_probs=24.2
Q ss_pred eeeEeeecceeEeEeeeCCCCCCCcceeehhhhc
Q 030783 92 PRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEV 125 (171)
Q Consensus 92 pRFVVl~G~cif~yL~sTDLsPqdStllsdIVEv 125 (171)
|=.|-|+..|+.||.+-.|..|-.----.|+=++
T Consensus 22 Pf~vwLrd~~V~YfvLradp~p~~~~~~~d~Dd~ 55 (126)
T PF14784_consen 22 PFSVWLRDKCVYYFVLRADPKPPEEFEKEDIDDV 55 (126)
T ss_pred CcEEEEcCceEEEEEEeCCCCCccccccccCCCc
Confidence 3456788899999999999988774333344344
No 155
>PF10517 DM13: Electron transfer DM13; InterPro: IPR019545 This domain of unknown function is present in proteins of Drosophila melanogaster, Caenorhabditis elegans and Arabidopsis thaliana. In some proteins it is found in either one or two copies, N-terminal to the DOMON domain. Proteins with the DM13 and DOMON domains include Skeletor, which is part of a macromolecular complex that forms the spindle matrix []. The DM13 domain is also a component of a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins []. It contains a nearly absolutely conserved cysteine, which could be involved in a redox reaction, either as a naked thiol group or through binding a prosthetic group like heme [].
Probab=22.90 E-value=1.8e+02 Score=20.97 Aligned_cols=39 Identities=26% Similarity=0.516 Sum_probs=28.0
Q ss_pred cceeEeEeeeC-CCCCCCccee-ehhhhccCCCCccccCCceEE
Q 030783 99 GSCIFFYLLST-DLSPQDSTVL-SDVVEVASLPSITRENGEMQY 140 (171)
Q Consensus 99 G~cif~yL~sT-DLsPqdStll-sdIVEvg~lP~~~rEdge~~y 140 (171)
|+=+||||-.. .-+|++.... .+-+++|+|..+ .|++.|
T Consensus 37 gPD~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~ 77 (108)
T PF10517_consen 37 GPDLYFWLGKGPSPTPDGFIIPSDEYVSLGPLKSY---NGDQTY 77 (108)
T ss_pred CCCEEEEEECCCCCCCcccccccccceeeeccccc---CCCEEE
Confidence 88899998766 4455555555 578899999887 455544
No 156
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.88 E-value=81 Score=25.10 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=25.9
Q ss_pred eeeEeeecceeEeEeeeCCCCCCCcceeehh
Q 030783 92 PRFIVLHGSCIFFYLLSTDLSPQDSTVLSDV 122 (171)
Q Consensus 92 pRFVVl~G~cif~yL~sTDLsPqdStllsdI 122 (171)
.||+||.-.|++||=-.+|=.|-.-+-|.++
T Consensus 21 ~~WFVLt~~~L~wykd~eeKE~kyilpLdnL 51 (110)
T cd01256 21 DYWFVLTSESLSWYKDDEEKEKKYMLPLDGL 51 (110)
T ss_pred ceEEEEecceeeeecccccccccceeecccc
Confidence 3789999999999999999888877666543
No 157
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=22.75 E-value=78 Score=22.89 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=18.2
Q ss_pred HHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHh
Q 030783 26 ATELESLRSELADLEDREAHLKAQLEHVDEILR 58 (171)
Q Consensus 26 ~~EvesLR~Ela~~eEREa~lkAqLehvDEvLR 58 (171)
...++.||.||+....=....++.|..+++-++
T Consensus 3 ~~~L~~L~~eL~~~~~ld~~~~~~L~~l~~dIe 35 (85)
T PF14357_consen 3 QELLEKLHQELEQNPPLDEETRAELSSLDDDIE 35 (85)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 457888999988643322333444444444333
No 158
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=22.43 E-value=42 Score=34.96 Aligned_cols=18 Identities=33% Similarity=0.665 Sum_probs=16.6
Q ss_pred cceeeEeeecceeEeEee
Q 030783 90 WLPRFIVLHGSCIFFYLL 107 (171)
Q Consensus 90 WlpRFVVl~G~cif~yL~ 107 (171)
|=-||-+|||.||+|+=-
T Consensus 1008 WhRyWc~L~gg~I~fWk~ 1025 (1116)
T KOG3640|consen 1008 WHRYWCALHGGEIKFWKY 1025 (1116)
T ss_pred hhhhhHHhcCCeeeeecC
Confidence 999999999999999853
No 159
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=22.40 E-value=85 Score=22.15 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhhHHHHHhhhhcc
Q 030783 41 DREAHLKAQLEHVDEILRSARLS 63 (171)
Q Consensus 41 EREa~lkAqLehvDEvLRsarls 63 (171)
.-++|.+.-++||+++|+++..+
T Consensus 26 ~~~~Q~~~~~~nl~~~L~~~G~~ 48 (105)
T cd06150 26 DITGQTRQVLAKIDALLAEAGSD 48 (105)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCC
Confidence 34678999999999999998654
No 160
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.34 E-value=72 Score=21.84 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=14.3
Q ss_pred HHHHhHHhhhcChHHHHHHHHHhhhhHHHHH
Q 030783 27 TELESLRSELADLEDREAHLKAQLEHVDEIL 57 (171)
Q Consensus 27 ~EvesLR~Ela~~eEREa~lkAqLehvDEvL 57 (171)
.+.+.+..+|..++.....+..+++..-+-|
T Consensus 69 ~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 69 ERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 161
>PRK14151 heat shock protein GrpE; Provisional
Probab=22.17 E-value=86 Score=25.53 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=23.1
Q ss_pred heeHHHHHhHHhhhcChHHHHHHHHHhhhhHH
Q 030783 23 ELTATELESLRSELADLEDREAHLKAQLEHVD 54 (171)
Q Consensus 23 elt~~EvesLR~Ela~~eEREa~lkAqLehvD 54 (171)
+-..++++.|+.|++++.++-..++|..+|.-
T Consensus 23 ~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~r 54 (176)
T PRK14151 23 DDLTARVQELEEQLAAAKDQSLRAAADLQNVR 54 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446777888888888887777777777753
No 162
>PRK14146 heat shock protein GrpE; Provisional
Probab=22.16 E-value=95 Score=26.16 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=24.2
Q ss_pred hheeHHHHHhHHhhhcChHHHHHHHHHhhhhHH
Q 030783 22 VELTATELESLRSELADLEDREAHLKAQLEHVD 54 (171)
Q Consensus 22 velt~~EvesLR~Ela~~eEREa~lkAqLehvD 54 (171)
++-..++++.|+.+++++.++-..++|..+|+-
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~r 88 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFK 88 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456778888888888888878888877753
No 163
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=22.16 E-value=82 Score=21.71 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=23.7
Q ss_pred hhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhhhh
Q 030783 21 KVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSAR 61 (171)
Q Consensus 21 kvelt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRsar 61 (171)
|+-....-+|.|-..++.-...-..|+.|+.++-+-|++.+
T Consensus 12 ~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 12 KLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334445666776676666677777777777777777765
No 164
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=22.08 E-value=83 Score=23.45 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhcc
Q 030783 40 EDREAHLKAQLEHVDEILRSARLS 63 (171)
Q Consensus 40 eEREa~lkAqLehvDEvLRsarls 63 (171)
+.-++|.+.-|+||+++|+.|..+
T Consensus 46 ~d~~~Q~~~~l~ni~~iL~~aG~~ 69 (127)
T TIGR03610 46 GDAAAQTRHVLETIKSVIETAGGT 69 (127)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCC
Confidence 456789999999999999998765
No 165
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.07 E-value=69 Score=23.30 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=14.1
Q ss_pred heeHHHHHhHHhhhcChHHHHHHHHHhhhhH
Q 030783 23 ELTATELESLRSELADLEDREAHLKAQLEHV 53 (171)
Q Consensus 23 elt~~EvesLR~Ela~~eEREa~lkAqLehv 53 (171)
++.....+.+..+++.+++..+.+++.++++
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (116)
T cd04769 82 QALEDKKQEIRAQITELQQLLARLDAFEASL 112 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444433
No 166
>PRK14160 heat shock protein GrpE; Provisional
Probab=22.04 E-value=73 Score=26.97 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=18.3
Q ss_pred heeHHHHHhHHhhhcChHHHHHHHHHhhhhH
Q 030783 23 ELTATELESLRSELADLEDREAHLKAQLEHV 53 (171)
Q Consensus 23 elt~~EvesLR~Ela~~eEREa~lkAqLehv 53 (171)
+-..++++.|+.+++++.++-..++|..+|.
T Consensus 64 ~~l~~~l~~l~~e~~elkd~~lR~~AefeN~ 94 (211)
T PRK14160 64 NKLKEENKKLENELEALKDRLLRTVAEYDNY 94 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666666664
No 167
>PLN02866 phospholipase D
Probab=21.84 E-value=1.5e+02 Score=30.94 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=26.7
Q ss_pred cccceeeEeeecceeEeEeeeCCCCCCCcceeehhhhccCCC
Q 030783 88 DDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLP 129 (171)
Q Consensus 88 DDWlpRFVVl~G~cif~yL~sTDLsPqdStllsdIVEvg~lP 129 (171)
+.|--||.|+.-+|+.|.- .|-+. -+.||+-+..+|
T Consensus 216 ~~w~k~w~v~k~~~l~~~~-----~p~~~-~~~~v~lfD~~~ 251 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLE-----DPFDA-KPLDIIVFDVLP 251 (1068)
T ss_pred CchheeEEEEeccEEEEEe-----cCCCC-ceeEEEEEeccc
Confidence 5799999999999998742 23333 367787777777
No 168
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=21.83 E-value=93 Score=26.52 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=27.3
Q ss_pred hheeHHHHHhHHhhhcChHHHHHHHHHhhhhHH
Q 030783 22 VELTATELESLRSELADLEDREAHLKAQLEHVD 54 (171)
Q Consensus 22 velt~~EvesLR~Ela~~eEREa~lkAqLehvD 54 (171)
-.....|+|+||+.+..+||--+.|.||..+..
T Consensus 62 aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlE 94 (193)
T PF14662_consen 62 AKALEEELEDLKTLAKSLEEENRSLLAQARQLE 94 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578999999999999999999999876653
No 169
>PF15409 PH_8: Pleckstrin homology domain
Probab=21.60 E-value=1.3e+02 Score=22.35 Aligned_cols=41 Identities=22% Similarity=0.433 Sum_probs=27.8
Q ss_pred eeEEEeeecccCCCCCCCCCCCCccccceeeEee--ecceeEeEeeeCCCCCCCcc
Q 030783 64 GYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVL--HGSCIFFYLLSTDLSPQDST 117 (171)
Q Consensus 64 gYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl--~G~cif~yL~sTDLsPqdSt 117 (171)
|||.-+.||- ..-|-.||.|| ...-+-||.---+....+|+
T Consensus 1 G~llKkrr~~-------------lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi 43 (89)
T PF15409_consen 1 GWLLKKRRKP-------------LQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSI 43 (89)
T ss_pred Ccceeecccc-------------CCCceeEEEEEEcCCcEEEEEecCCCCeeEeEE
Confidence 6777777773 24589999999 88888888743333344443
No 170
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=21.51 E-value=1.4e+02 Score=21.95 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=27.2
Q ss_pred HHHHHhHHhhhcC------hHHHHHHHHHhhhhHHHHHhhhh
Q 030783 26 ATELESLRSELAD------LEDREAHLKAQLEHVDEILRSAR 61 (171)
Q Consensus 26 ~~EvesLR~Ela~------~eEREa~lkAqLehvDEvLRsar 61 (171)
.+.+|.||.++.. -++....|.++.-|||-+++.|.
T Consensus 17 Pe~fe~lr~~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~k 58 (83)
T PF11333_consen 17 PEAFEQLRQELIEEMIESAPEEMQPRLRALQFHIDMQRSRCK 58 (83)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456777776543 46778899999999999988753
No 171
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=21.42 E-value=1.1e+02 Score=24.58 Aligned_cols=33 Identities=42% Similarity=0.640 Sum_probs=27.3
Q ss_pred HHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 030783 27 TELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (171)
Q Consensus 27 ~EvesLR~Ela~~eEREa~lkAqLehvDEvLRs 59 (171)
+-++.+..||..+|.+-.+.++..++|.+..+.
T Consensus 143 ~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~ 175 (216)
T cd07627 143 EKLNSLLSELEEAERRASELKKEFEEVSELIKS 175 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999999999999999887653
No 172
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.23 E-value=72 Score=23.02 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=6.2
Q ss_pred cChHHHHHHHHHhhhhH
Q 030783 37 ADLEDREAHLKAQLEHV 53 (171)
Q Consensus 37 a~~eEREa~lkAqLehv 53 (171)
+.++++-+.+.+..+.+
T Consensus 85 ~~l~~~i~~l~~~~~~l 101 (108)
T cd01107 85 AELEAEIEELQRILRLL 101 (108)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 173
>PRK14148 heat shock protein GrpE; Provisional
Probab=21.18 E-value=84 Score=26.21 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=22.4
Q ss_pred hheeHHHHHhHHhhhcChHHHHHHHHHhhhhHH
Q 030783 22 VELTATELESLRSELADLEDREAHLKAQLEHVD 54 (171)
Q Consensus 22 velt~~EvesLR~Ela~~eEREa~lkAqLehvD 54 (171)
++-...+++.|+.|++++.+|-..++|..+|+-
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~r 74 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIR 74 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777777777777777777754
No 174
>PTZ00066 pyruvate kinase; Provisional
Probab=21.04 E-value=72 Score=30.23 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=26.6
Q ss_pred eHHHHHhHHhhh----------cChHHHHHHHHHhhhhHHHHHhhhhcceeEEEe
Q 030783 25 TATELESLRSEL----------ADLEDREAHLKAQLEHVDEILRSARLSGYLYIR 69 (171)
Q Consensus 25 t~~EvesLR~El----------a~~eEREa~lkAqLehvDEvLRsarlsgYLyiR 69 (171)
++.+++.+|.-| |.+|.+|+ ++|+|||++.| -|-+--|
T Consensus 234 ~a~DI~~~r~~l~~~g~~~~IiAKIE~~~a-----v~NldeIl~~s--DGIMVAR 281 (513)
T PTZ00066 234 SADDVRLCRQLLGERGRHIKIIPKIENIEG-----LINFDEILAES--DGIMVAR 281 (513)
T ss_pred CHHHHHHHHHHHHhCCCCceEEEEECCHHH-----HHHHHHHHHhc--CEEEEEc
Confidence 456777777665 56777766 58999999987 4555444
No 175
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=20.64 E-value=1.2e+02 Score=26.14 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=20.8
Q ss_pred eHHHHHhHHhhhcChHHHHHHHHHhhhhHHHH
Q 030783 25 TATELESLRSELADLEDREAHLKAQLEHVDEI 56 (171)
Q Consensus 25 t~~EvesLR~Ela~~eEREa~lkAqLehvDEv 56 (171)
+..|...|-.|+.-+++|.+.|.-+|.++++-
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~ 118 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEE 118 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666653
No 176
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.59 E-value=31 Score=26.61 Aligned_cols=49 Identities=14% Similarity=-0.033 Sum_probs=33.1
Q ss_pred hhhhccCCCCccccC--CceEEEEEEEeec-ceeeeecccceeeeeeeeeee
Q 030783 121 DVVEVASLPSITREN--GEMQYCFYILTRH-GLRIECSSISKIQVLVILIYL 169 (171)
Q Consensus 121 dIVEvg~lP~~~rEd--ge~~yaFyIlTrh-GLR~ECSS~skiQVdswLs~l 169 (171)
|-+||..+|.=...+ ...++||+|.... +--|.|+..+.-+=.+||.|+
T Consensus 52 ~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~ 103 (109)
T cd01224 52 DRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAF 103 (109)
T ss_pred ccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHH
Confidence 345666666544442 2348899999887 566777777777777887765
No 177
>PF04698 Rab_eff_C: Rab effector MyRIP/melanophilin C-terminus; InterPro: IPR006788 MOBP is abundantly expressed in central nervous system myelin, and shares several characteristics with myelin basic protein (MBP), in terms of regional distribution and function. MOBP has been shown to be essential for normal arrangement of the radial component in central nervous system myelin [, ].
Probab=20.56 E-value=70 Score=31.96 Aligned_cols=44 Identities=27% Similarity=0.380 Sum_probs=36.3
Q ss_pred cchhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHHHHHhhhhc
Q 030783 19 QEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSARL 62 (171)
Q Consensus 19 qekvelt~~EvesLR~Ela~~eEREa~lkAqLehvDEvLRsarl 62 (171)
.+||-.+||+|++-.+|+.++|-|-+-|+|-==+|+-.-|-.|-
T Consensus 593 e~~va~aaa~vq~~e~~~s~i~~ri~al~~agl~v~~~~~~~r~ 636 (714)
T PF04698_consen 593 EDQVASAAAQVQQAESEVSDIESRIAALSAAGLNVKPCVKPTRK 636 (714)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCceeccccccccc
Confidence 35788899999999999999999999999987777765554443
No 178
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=20.52 E-value=1.3e+02 Score=20.57 Aligned_cols=37 Identities=22% Similarity=0.432 Sum_probs=23.7
Q ss_pred cchhheeHHHHHhHHhhhcChHHHHHHHHHhhhhHHH
Q 030783 19 QEKVELTATELESLRSELADLEDREAHLKAQLEHVDE 55 (171)
Q Consensus 19 qekvelt~~EvesLR~Ela~~eEREa~lkAqLehvDE 55 (171)
++|+.-....++.+...+..+|.|.+-+..++.++-+
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~ 41 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNK 41 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777777777777666666555443
No 179
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.48 E-value=48 Score=31.47 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=12.3
Q ss_pred hhheeHHHHHhHHhhhcChHHH
Q 030783 21 KVELTATELESLRSELADLEDR 42 (171)
Q Consensus 21 kvelt~~EvesLR~Ela~~eER 42 (171)
|||-+.+||++|+.++.++.+|
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccc
Confidence 5555555555555555554444
No 180
>PRK14145 heat shock protein GrpE; Provisional
Probab=20.37 E-value=99 Score=25.92 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=18.6
Q ss_pred heeHHHHHhHHhhhcChHHHHHHHHHhhhhH
Q 030783 23 ELTATELESLRSELADLEDREAHLKAQLEHV 53 (171)
Q Consensus 23 elt~~EvesLR~Ela~~eEREa~lkAqLehv 53 (171)
+-+.++++.++.+++++.++-..++|..+|.
T Consensus 48 ~~l~~~l~~le~e~~el~d~~lR~~AEfeN~ 78 (196)
T PRK14145 48 EELKQKLQQKEVEAQEYLDIAQRLKAEFENY 78 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666666666664
No 181
>PRK04406 hypothetical protein; Provisional
Probab=20.12 E-value=1.4e+02 Score=21.27 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=21.6
Q ss_pred HhHHhhhcChHHHHHHHHHhhhhHHHHHh
Q 030783 30 ESLRSELADLEDREAHLKAQLEHVDEILR 58 (171)
Q Consensus 30 esLR~Ela~~eEREa~lkAqLehvDEvLR 58 (171)
+.+-.-|.++|+|-|+...-++.+++++-
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~ 35 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALS 35 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888877777777653
Done!