BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030784
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 72/101 (71%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
V SW++ +L S+ PV+V+F+A WCGPC+++ VIDE+A EY+G++ + +NTD I
Sbjct: 4 VNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGI 63
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 169
A Y I+++P VL FKNGE++E+++G +PK +IE+ L
Sbjct: 64 ATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 104
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 72/101 (71%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
V SW++ +L S+ PV+V+F+A WCGPC+++ VIDE+A EY+G++ + +NTD I
Sbjct: 5 VNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGI 64
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 169
A Y I+++P VL FKNGE++E+++G +PK +IE+ L
Sbjct: 65 ATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 105
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 71/103 (68%)
Query: 67 AVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL 126
V D+++ +L S PVLV+F+A WCGPCR++ V+DEIAGEY +L+C +NTD
Sbjct: 4 GAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESP 63
Query: 127 TIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 169
+A +Y I+++P +++FK G+K ET++G +PK + +E+ L
Sbjct: 64 NVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 106
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 71/101 (70%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
V SW++ +L S+ PV+V+F+A WCGP +++ VIDE+A EY+G++ + +NTD I
Sbjct: 5 VNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPGI 64
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 169
A Y I+++P VL FKNGE++E+++G +PK +IE+ L
Sbjct: 65 ATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 105
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 59/90 (65%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS+E +L +D +LV+F+A WCGPC+M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 59/90 (65%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
VT DS++ +L +D +LV+F+A WCGPC+M+ ++DEIA EY G+L +N D +
Sbjct: 7 VTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 69/101 (68%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
VT +++E+ +L SD PVLV+F+A WCGPCRM+ +I+E+A EY G+++ VN D +
Sbjct: 6 VTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNT 65
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 169
A Y I+++P +LLFKNG+ + +VG PKE I++ L
Sbjct: 66 AAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKHL 106
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 60/90 (66%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T+DS++ +L +D +LV+F+A WCGPC+M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 60/90 (66%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGPC+M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+++P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRSIPTLLLFKNGEVAATKVGALSK 96
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 59/90 (65%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGPC+M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 59/90 (65%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGPC+M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 59/90 (65%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGPC+M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 59/90 (65%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGPC+M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 59/90 (65%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGPC+M+ ++DEIA EY G+L +N D +
Sbjct: 17 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 76
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 77 APKYGIRGIPTLLLFKNGEVAATKVGALSK 106
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 59/90 (65%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGPC+++ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 59/90 (65%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGPC+M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 59/90 (65%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGPC+M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 93.2 bits (230), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 58/90 (64%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGPC+M+ ++DEIA EY G+L +N D +
Sbjct: 8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 67
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ P +LLFKNGE T VG + K
Sbjct: 68 APKYGIRGTPTLLLFKNGEVAATKVGALSK 97
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 58/90 (64%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGPC M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 59/90 (65%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGPC+M+ ++D+IA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 59/90 (65%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGPC+M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNG+ T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGDVAATKVGALSK 96
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 59/90 (65%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGPC+M+ ++DEIA +Y G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 59/90 (65%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T +S++ +L +D +LV+F+A WCGPC+M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 59/90 (65%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGPC+M+ +++EIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 58/90 (64%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGPC+M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAACKVGALSK 96
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 58/90 (64%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGP +M+ ++DEIA EY G+L +N D +
Sbjct: 27 LTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 86
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 87 APKYGIRGIPTLLLFKNGEVAATKVGALSK 116
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 58/90 (64%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCGP +M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 58/90 (64%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WCG C+M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 89.4 bits (220), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCG-PCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLT 127
+T DS++ +L +D +LV+F+A WCG PC+M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG 66
Query: 128 IAEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 TAPKYGIRGIPTLLLFKNGEVAATKVGALSK 97
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 58/90 (64%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ ++ +D +LV+F+A WCGPC+M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y + +P +LLFKNGE T VG + K
Sbjct: 67 APKYIERGIPTLLLFKNGEVAATKVGALSK 96
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 4/103 (3%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
VT DS+E+ +L +D PVLV+F+A+WCGPCR + ++ IA EY ++ +N D +
Sbjct: 10 VTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGT 69
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 171
A Y + ++P + +++ GE +T+VG PK AAI R L+
Sbjct: 70 AAKYGVMSIPTLNVYQGGEVAKTIVGAKPK----AAIVRDLED 108
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 57/90 (63%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WC C+M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 14/104 (13%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGP--------------CRMVHRVIDEIAGEYAGR 114
+T DS++ +L +D +LV+F+A WCGP C+M+ ++DEIA EY G+
Sbjct: 8 LTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK 67
Query: 115 LRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
L +N D + A Y I+ +P +LLFKNGE T VG + K
Sbjct: 68 LTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSK 111
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 56/90 (62%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T DS++ +L +D +LV+F+A WC +M+ ++DEIA EY G+L +N D +
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158
A Y I+ +P +LLFKNGE T VG + K
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVGALSK 96
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK 144
VLV+F+A WC PCR + +++EIA EY G+L ++ D + A Y + ++P V+LFK
Sbjct: 22 VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 81
Query: 145 NGEKRETVVGTMPKEFYIAAIERVLKS 171
+G+ E +VG PK Y A IE+ L +
Sbjct: 82 DGQPVEVLVGAQPKRNYQAKIEKHLPA 108
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK 144
VLV+F+A WC PCR + +++EIA EY G+L ++ D + A Y + ++P V+LFK
Sbjct: 21 VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 80
Query: 145 NGEKRETVVGTMPKEFYIAAIERVLKS 171
+G+ E +VG PK Y A IE+ L +
Sbjct: 81 DGQPVEVLVGAQPKRNYQAKIEKHLPA 107
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 65/101 (64%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
VT S+ +L+S+ PVLV+F+A+WCGPC+MV V++EIA E A L ++ DT+
Sbjct: 12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPET 71
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 169
A ++++ ++P ++LFK+G+ + +VG K + + V+
Sbjct: 72 ARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 112
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 65/101 (64%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
VT S+ +L+S+ PVLV+F+A+WCGPC+MV V++EIA E A L ++ DT+
Sbjct: 17 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPET 76
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 169
A ++++ ++P ++LFK+G+ + +VG K + + V+
Sbjct: 77 ARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 117
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 54/90 (60%)
Query: 80 NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPV 139
D P +V+FYA WCGPC+MV ++DE+A EY G++ + V+T+ + +A + I+++P
Sbjct: 36 EGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPS 95
Query: 140 VLLFKNGEKRETVVGTMPKEFYIAAIERVL 169
+L K E G MPK + AI+ L
Sbjct: 96 ILFIPMEGKPEMAQGAMPKASFKKAIDEFL 125
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 57/95 (60%)
Query: 76 KSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIK 135
+ + D PVLV+F+A+WCGPCRM+ V++E A +A ++ +N D + + I
Sbjct: 11 QQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIM 70
Query: 136 AVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170
++P ++LFK GE + ++G PKE A + VL+
Sbjct: 71 SIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVLQ 105
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 57/95 (60%)
Query: 76 KSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIK 135
+ + D PVLV+F+A+WCGPCRM+ V++E A +A ++ +N D + + I
Sbjct: 11 QQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIM 70
Query: 136 AVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170
++P ++LFK GE + ++G PKE A + VL+
Sbjct: 71 SIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVLQ 105
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 64/101 (63%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
VT S+ +L+S+ PVLV+F+A+WCGP +MV V++EIA E A L ++ DT+
Sbjct: 14 VTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPET 73
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 169
A ++++ ++P ++LFK+G+ + +VG K + + V+
Sbjct: 74 ARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 114
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 55/89 (61%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
D P +V+FYA WCGPC+MV +++E++ EYAG++ + VN D + +A D+ I+++P +
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTI 109
Query: 141 LLFKNGEKRETVVGTMPKEFYIAAIERVL 169
+ + +G + KE I++VL
Sbjct: 110 WFVPMKGEPQVNMGALSKEQLKGYIDKVL 138
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
D P +V+FYA WCGPC+MV +++E++ EYAG++ + VN D + +A D+ I+ +P +
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTI 109
Query: 141 LLFKNGEKRETVVGTMPKEFYIAAIERVL 169
+ + +G + KE I++VL
Sbjct: 110 WFVPMKGEPQVNMGALSKEQLKGYIDKVL 138
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 56/84 (66%)
Query: 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKN 145
LV+F+A+WCGPC+M+ V++E+A +Y G+ ++ D + + A YE+ ++P +++FK+
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 146 GEKRETVVGTMPKEFYIAAIERVL 169
G+ + VVG PKE +++ L
Sbjct: 84 GQPVDKVVGFQPKENLAEVLDKHL 107
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 61/103 (59%)
Query: 64 ESRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD 123
E V+ S+++ +L + VLV+F+A WCGPC+M+ + EI E+AG++ VN D
Sbjct: 2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNID 61
Query: 124 TDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIE 166
+ Y+++++P ++L ++G+ + VG +PK A +E
Sbjct: 62 DNPETPNAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWVE 104
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 56/95 (58%)
Query: 76 KSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIK 135
+ + D PVLV+F+A+WCGPCRM+ V++E A +A ++ +N D + + I
Sbjct: 11 QQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIM 70
Query: 136 AVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170
++P ++LFK G + ++G PKE A + VL+
Sbjct: 71 SIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVLQ 105
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 56/95 (58%)
Query: 76 KSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIK 135
+ + D PVLV+F+A+WCGPCRM+ V++E A +A ++ +N D + + I
Sbjct: 11 QQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIM 70
Query: 136 AVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170
++P ++LFK G + ++G PKE A + VL+
Sbjct: 71 SIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVLQ 105
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 60 LCVRESRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCF 118
L R S V++ K + D V+++F+A+WCGPC+M+ V ++I+ AG ++ +
Sbjct: 11 LVPRGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFY 70
Query: 119 MVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIA 163
V+ D IA++ I+A+P + FKNG+K +TVVG P + A
Sbjct: 71 KVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAA 115
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 55/84 (65%)
Query: 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKN 145
LV+F+A+WCG C+M+ V++E+A +Y G+ ++ D + + A YE+ ++P +++FK+
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 146 GEKRETVVGTMPKEFYIAAIERVL 169
G+ + VVG PKE +++ L
Sbjct: 83 GQPVDKVVGFQPKENLAEVLDKHL 106
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%)
Query: 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKN 145
LV+F+A WCGPCR+V +++E+A ++AGRL+ VN D +A Y +++VP ++LF+
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRR 113
Query: 146 GEKRETVVGTMPK 158
G T VG P+
Sbjct: 114 GAPVATWVGASPR 126
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 55/84 (65%)
Query: 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKN 145
LV+F+A+WCG C+M+ V++E+A +Y G+ ++ D + + A YE+ ++P +++FK+
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 146 GEKRETVVGTMPKEFYIAAIERVL 169
G+ + VVG PKE +++ L
Sbjct: 84 GQPVDKVVGFQPKENLAEVLDKHL 107
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 55/84 (65%)
Query: 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKN 145
LV+F+A+ CGPC+M+ V++E+A +Y G+ ++ D + + A YE+ ++P +++FK+
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 146 GEKRETVVGTMPKEFYIAAIERVL 169
G+ + VVG PKE +++ L
Sbjct: 83 GQPVDKVVGFQPKENLAEVLDKHL 106
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%)
Query: 78 ILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAV 137
+L D P +++F+A WCGPCR + E A E AG++R VNT+ + ++ + I+++
Sbjct: 51 LLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSI 110
Query: 138 PVVLLFKNGEKRETVVGTMPK 158
P + L++NG+ + + G +PK
Sbjct: 111 PTIXLYRNGKXIDXLNGAVPK 131
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 54/84 (64%)
Query: 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKN 145
LV+F+A+WCG +M+ V++E+A +Y G+ ++ D + + A YE+ ++P +++FK+
Sbjct: 24 LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 146 GEKRETVVGTMPKEFYIAAIERVL 169
G+ + VVG PKE +++ L
Sbjct: 84 GQPVDKVVGFQPKENLAEVLDKHL 107
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 80 NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPV 139
S+ VL +F+A WCGPC+M+ V++E+ E +L+ ++ D + A Y + ++P
Sbjct: 15 TSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPT 74
Query: 140 VLLFKNGEKRETVVGTMPKE 159
+L+ K+GE ET VG PKE
Sbjct: 75 LLVLKDGEVVETSVGFKPKE 94
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 61/97 (62%)
Query: 73 SWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDY 132
++ ++NS+TPV+V+F+A WCGPC+++ ++++ + G++ V+ D +A +Y
Sbjct: 22 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEY 81
Query: 133 EIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 169
E+ AVP VL KNG+ + VG ++ A +++++
Sbjct: 82 EVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 118
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 59/95 (62%), Gaps = 6/95 (6%)
Query: 77 SILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKA 136
S + D V+V+FYA+WCGPC+M+ +I++ + +Y + + ++ D +A+ E+ A
Sbjct: 13 SAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVAQKNEVSA 71
Query: 137 VPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 171
+P +LLFKNG++ VVG P AAI++ + +
Sbjct: 72 MPTLLLFKNGKEVAKVVGANP-----AAIKQAIAA 101
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 59/95 (62%), Gaps = 6/95 (6%)
Query: 77 SILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKA 136
S + D V+V+FYA+WCGPC+M+ +I++ + +Y + + ++ D +A+ E+ A
Sbjct: 19 SAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVAQKNEVSA 77
Query: 137 VPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 171
+P +LLFKNG++ VVG P AAI++ + +
Sbjct: 78 MPTLLLFKNGKEVAKVVGANP-----AAIKQAIAA 107
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
S+ VL +F+A WCGP +M+ V++E+ E +L+ ++ D + A Y + ++P +
Sbjct: 16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTL 75
Query: 141 LLFKNGEKRETVVGTMPKE 159
L+ K+GE ET VG PKE
Sbjct: 76 LVLKDGEVVETSVGFKPKE 94
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
S+ VL +F+A WCGP +M+ V++E+ E +L+ ++ D + A Y + ++P +
Sbjct: 16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTL 75
Query: 141 LLFKNGEKRETVVGTMPKE 159
L+ K+GE ET VG PKE
Sbjct: 76 LVLKDGEVVETSVGFKPKE 94
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 60/103 (58%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T +E +L ++ PVLV F+ASWCGPC+++ +I+ A Y+ RL+ + D + T
Sbjct: 12 ITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTT 71
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 171
+ Y+++ VP + L K + ++ G + K+ ++ ++ L +
Sbjct: 72 VKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHLNN 114
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 77 SILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKA 136
S + D V+V+FYA+WCGP +M+ +I++ + +Y + + ++ D +A+ E+ A
Sbjct: 19 SAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYP-QADFYKLDVDELGDVAQKNEVSA 77
Query: 137 VPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 169
+P +LLFKNG++ VVG P AAI++ +
Sbjct: 78 MPTLLLFKNGKEVAKVVGANP-----AAIKQAI 105
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 5/87 (5%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK 144
V+V+F+A WC PC ++ VI+E+A +Y ++ +NT+ IA Y I ++P ++ FK
Sbjct: 26 VVVDFWAEWCAPCLILAPVIEELANDYP-QVAFGKLNTEESQDIAMRYGIMSLPTIMFFK 84
Query: 145 NGEKRETVVGTMPKEFYIAAIERVLKS 171
NGE + ++G +P+E IE LKS
Sbjct: 85 NGELVDQILGAVPRE----EIEVRLKS 107
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 76 KSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIK 135
S L S +V+F+A WC PC ++ +I+E+A +Y ++ +N+D + IA Y +
Sbjct: 10 DSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP-QVGFGKLNSDENPDIAARYGVM 68
Query: 136 AVPVVLLFKNGEKRETVVGTMPKE 159
++P V+ FK+GE + ++G +P+E
Sbjct: 69 SLPTVIFFKDGEPVDEIIGAVPRE 92
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 64 ESRAVV---TKDSWEKSILNS-DTP--VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRC 117
E AV+ TK ++ + N DT V+++F ASWCGPCR++ V E A ++ G +
Sbjct: 4 EEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIF- 62
Query: 118 FMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFY 161
V+ D +AE Y ++A+P L K+GEK ++VVG + +
Sbjct: 63 LKVDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIH 106
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 60/98 (61%), Gaps = 6/98 (6%)
Query: 74 WEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYE 133
++ ++ + D V+V+F+A+WCGPC+M+ +I++ A +Y+ + ++ D +A+ E
Sbjct: 11 YDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS-DAAFYKLDVDEVSDVAQKAE 69
Query: 134 IKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 171
+ ++P ++ +K G++ VVG P AAI++ + S
Sbjct: 70 VSSMPTLIFYKGGKEVTRVVGANP-----AAIKQAIAS 102
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
D V+V+F A+WCGPC+M+ ++ +Y+ + V+ D +A Y I+ +P +
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDAQDVAPKYGIRGIPTL 77
Query: 141 LLFKNGEKRETVVGTMPK 158
LLFKNGE T VG + K
Sbjct: 78 LLFKNGEVAATKVGALSK 95
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 60/98 (61%), Gaps = 6/98 (6%)
Query: 74 WEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYE 133
++ ++ + D V+V+F+A+WCGPC+M+ +I++ A +Y+ + ++ D +A+ E
Sbjct: 18 YDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDA-AFYKLDVDEVSDVAQKAE 76
Query: 134 IKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 171
+ ++P ++ +K G++ VVG P AAI++ + S
Sbjct: 77 VSSMPTLIFYKGGKEVTRVVGANP-----AAIKQAIAS 109
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVL 141
D P+LV+F+A WCGPCR + A AG++R ++T +A + I+ +P +
Sbjct: 64 DLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFI 123
Query: 142 LFKNGEKRETVVGTMP 157
LF G + G P
Sbjct: 124 LFHKGRELARAAGARP 139
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLT 127
V+T++++++ I N+ VLV+ +A WC PC + + ++A +Y G+ +N D +
Sbjct: 8 VLTEENFDEVIRNNKL-VLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQK 66
Query: 128 IAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170
IA+ Y + +P L+F NG+ +++VG + ++ + + + LK
Sbjct: 67 IADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKYLK 109
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 59/98 (60%), Gaps = 6/98 (6%)
Query: 74 WEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYE 133
++ ++ + D V+V+F+A+WCGP +M+ +I++ A +Y+ + ++ D +A+ E
Sbjct: 11 YDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS-DAAFYKLDVDEVSDVAQKAE 69
Query: 134 IKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 171
+ ++P ++ +K G++ VVG P AAI++ + S
Sbjct: 70 VSSMPTLIFYKGGKEVTRVVGANP-----AAIKQAIAS 102
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 72 DSWEKSILNSDTP---VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+ W I ++T V+++F ASWCGPCR++ V ++A ++ + V+ D I
Sbjct: 21 EQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAV-FLKVDVDELKPI 79
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPKEF 160
AE + ++A+P L K G+ ++ VVG + +E
Sbjct: 80 AEQFSVEAMPTFLFMKEGDVKDRVVGAIKEEL 111
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 59/98 (60%), Gaps = 6/98 (6%)
Query: 74 WEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYE 133
++ ++ + D V+V+F+A+WCGP +M+ +I++ A +Y+ + ++ D +A+ E
Sbjct: 19 YDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS-DAAFYKLDVDEVSDVAQKAE 77
Query: 134 IKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 171
+ ++P ++ +K G++ VVG P AAI++ + S
Sbjct: 78 VSSMPTLIFYKGGKEVTRVVGANP-----AAIKQAIAS 110
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK 144
V+++F+A+WCGPC+M+ + E++ ++A + V+ D IA +Y I ++P + K
Sbjct: 28 VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLK 87
Query: 145 NGEKRETVVGTMPKEFYIAAIERVLKS 171
NG K E G K +E V+K+
Sbjct: 88 NGVKVEEFAGANAKR-----LEDVIKA 109
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK 144
V+++F+A+WCGPC+M+ + E++ ++A + V+ D IA +Y I ++P + K
Sbjct: 23 VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLK 82
Query: 145 NGEKRETVVGTMPKEFYIAAIERVLKS 171
NG K E G K +E V+K+
Sbjct: 83 NGVKVEEFAGANAKR-----LEDVIKA 104
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK 144
V+++F ASWCGPCR + V E A ++ G + V+ D +AE Y ++A+P L K
Sbjct: 39 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIK 97
Query: 145 NGEKRETVVGT 155
+G + + VVG
Sbjct: 98 DGAEADKVVGA 108
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 70 TKDSWEKSIL---NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL 126
T ++W + + S T V+V+F ASWCGPCR + ++A + L V+TD
Sbjct: 23 TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVL-FLKVDTDELK 81
Query: 127 TIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEF 160
++A D+ I+A+P + K G+ + VVG E
Sbjct: 82 SVASDWAIQAMPTFMFLKEGKILDKVVGAKKDEL 115
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK 144
V+++FYA+WCGPC+M+ ++E++ + + V+ D IA+D +I +P L K
Sbjct: 23 VVIDFYATWCGPCKMIAPKLEELS-QSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFMK 81
Query: 145 NGEKRETVVG 154
NG+K +++ G
Sbjct: 82 NGQKLDSLSG 91
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVH----RVIDEIAGEYAGRLRCFMVNTDT 124
+T DS++K++L+S+ +VEFYA WCG C+ + E+ + G+++ V+
Sbjct: 12 LTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV 71
Query: 125 DLTIAEDYEIKAVPVVLLFKNGE 147
+ +A Y I+ P + +F+ GE
Sbjct: 72 NQVLASRYGIRGFPTIKIFQKGE 94
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 84 PVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLR-CFMVNTDTDLTIAEDYEIKAVPVVLL 142
P+++ F SWC PC+ + +E+A + G +R +M D + T+AE I+ +P + L
Sbjct: 19 PIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMAE-LNIRTLPSLAL 77
Query: 143 FKNGEKRETVVGTMPK 158
F +G RE GTM K
Sbjct: 78 FVDGMIREVFSGTMNK 93
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 72 DSWEKSILNSDTP---VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+ W I ++T V+++F ASWCGP R++ V ++A ++ + V+ D I
Sbjct: 24 EQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAV-FLKVDVDELKPI 82
Query: 129 AEDYEIKAVPVVLLFKNGEKRETVVGTMPKEF 160
AE + ++A+P L K G+ ++ VVG + +E
Sbjct: 83 AEQFSVEAMPTFLFMKEGDVKDRVVGAIKEEL 114
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 83 TPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLL 142
TPVL F++ C + V++ +A +Y G+ ++ D + IA + ++A+P V L
Sbjct: 27 TPVLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKLDCDAEQXIAAQFGLRAIPTVYL 86
Query: 143 FKNGEKRETVVGTMPKEFYIAAIERVL 169
F+NG+ + G P+E A +++VL
Sbjct: 87 FQNGQPVDGFQGPQPEEAIRALLDKVL 113
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK 144
V+V+F+A+WCGPC+ + + E++ +Y V+ D A Y I A+P + K
Sbjct: 36 VVVDFFATWCGPCKTIAPLFKELSEKYDAIF--VKVDVDKLEETARKYNISAMPTFIAIK 93
Query: 145 NGEKRETVVGTMPKEFYIAAIERVLK 170
NGEK VVG IA +E ++K
Sbjct: 94 NGEKVGDVVGA-----SIAKVEDMIK 114
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK 144
V+V+F+A+WCGPC+ + + E++ +Y V+ D A Y I A+P + K
Sbjct: 27 VVVDFFATWCGPCKTIAPLFKELSEKYDAIF--VKVDVDKLEETARKYNISAMPTFIAIK 84
Query: 145 NGEKRETVVGTMPKEFYIAAIERVLK 170
NGEK VVG IA +E ++K
Sbjct: 85 NGEKVGDVVGA-----SIAKVEDMIK 105
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
Query: 76 KSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIK 135
++++ + ++++FYA+WCGPC+M+ + ++ Y +R + D IA++ E+
Sbjct: 24 RNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP-DVRFVKCDVDESPDIAKECEVT 82
Query: 136 AVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 171
A+P +L K+G+ ++G P A+E+ +K
Sbjct: 83 AMPTFVLGKDGQLIGKIIGANP-----TALEKGIKD 113
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 70 TKDSWEKSILNSD---TPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL 126
+K +W+ + P++V+F A+WCGPC+M+ + + ++ +YAG++ V+ D
Sbjct: 9 SKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA 68
Query: 127 TIAEDYEIKAVPVVLLFKNGEKRETVVG 154
+AE I A+P ++K+G K + +VG
Sbjct: 69 AVAEAAGITAMPTFHVYKDGVKADDLVG 96
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 70 TKDSWEKSILNSD---TPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL 126
+K +W+ + P++V F A+WCGPC+M+ + + ++ +YAG++ V+ D
Sbjct: 9 SKAAWDAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA 68
Query: 127 TIAEDYEIKAVPVVLLFKNGEKRETVVG 154
+AE I A+P ++K+G K + +VG
Sbjct: 69 AVAEAAGITAMPTFHVYKDGVKADDLVG 96
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
D V+V+F A+WCGPC+M+ ++ +Y+ + V+ D +A + E+KA P
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDAQDVASEAEVKATPTF 77
Query: 141 LLFKNGEK 148
FK G+K
Sbjct: 78 QFFKKGQK 85
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 83 TPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLL 142
TPVL F++ C + +++ +A +Y G+ ++ D + IA + ++A+P V L
Sbjct: 27 TPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYL 86
Query: 143 FKNGEKRETVVGTMPKEFYIAAIERVL 169
F+NG+ + G P+E A ++ VL
Sbjct: 87 FQNGQPVDGFQGPQPEEAIRALLDXVL 113
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLT 127
+VT + SI++ + V+V+F+A WCGPC+ + +E + Y ++ V+ D
Sbjct: 12 IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSE 70
Query: 128 IAEDYEIKAVPVVLLFKNGEKRETVVG 154
+ E I ++P ++KNG +T++G
Sbjct: 71 VTEKENITSMPTFKVYKNGSSVDTLLG 97
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 68 VVTKDSWEKSILNSDTP---VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT 124
+ TK+ W++ + + VL F A WCGPC+ + E++ Y L +++ D
Sbjct: 29 ITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPS-LMFLVIDVDE 87
Query: 125 DLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFY 161
+ +EIKA P ++G++ + +VG E +
Sbjct: 88 LSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELH 124
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 70 TKDSWEKSI---LNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL 126
T D+W++ S ++V+F ASWC PC+M+ + E+A ++ + V+ D
Sbjct: 11 TVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELK 69
Query: 127 TIAEDYEIKAVPVVLLFKNGEKRETVVG 154
+AE++ ++A+P + K+G+ + VG
Sbjct: 70 AVAEEWNVEAMPTFIFLKDGKLVDKTVG 97
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
D V+V+F A+WCGPC+M+ ++ +Y+ + V+ D +A + E+K++P
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIF-LEVDVDDCQDVASESEVKSMPTF 77
Query: 141 LLFKNGEK 148
FK G+K
Sbjct: 78 QFFKKGQK 85
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVL 141
+T +++ F+A WC C M +D++ Y R+ V+ D + ++A + +K++P ++
Sbjct: 42 NTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTII 101
Query: 142 LFKN 145
L KN
Sbjct: 102 LLKN 105
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
D V+V+F A+WCGPC+M+ ++ +Y+ + V+ D +A + E+K++P
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIF-LEVDVDDCQDVASECEVKSMPTF 77
Query: 141 LLFKNGEK 148
FK G+K
Sbjct: 78 QFFKKGQK 85
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
D V+V+F A+WCGPC+M+ ++ +Y+ + V+ D +A + E+K +P
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIF-LEVDVDDCQDVASEXEVKCMPTF 77
Query: 141 LLFKNGEK 148
FK G+K
Sbjct: 78 QFFKKGQK 85
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
D V+V+F A+WCGPC+M+ ++ +Y+ + V+ D +A + E+K +P
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIF-LEVDVDDCQDVASECEVKCMPTF 77
Query: 141 LLFKNGEK 148
FK G+K
Sbjct: 78 QFFKKGQK 85
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T S++K+I N++ LVEFYA WCG C+ + + A G ++ VN D +
Sbjct: 22 LTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNK 81
Query: 129 A--EDYEIKAVPVVLLFK 144
A Y++ P +++F+
Sbjct: 82 ALCAKYDVNGFPTLMVFR 99
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFM-VNTDTDLTIAEDYEIKAVPVV 140
D +++ F+ SW PC+ + +V + I+ E + F+ ++ D + I+E +EI AVP
Sbjct: 21 DKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYF 80
Query: 141 LLFKNGEKRETVVGTMPKEFYIAAIE 166
++ G + + G PKE Y++ +E
Sbjct: 81 IIIHKGTILKELSGADPKE-YVSLLE 105
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
D V+V+F A+WCGPC+M+ ++ +Y+ + V+ D +A + E+K P
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIF-LEVDVDDCQDVASECEVKCTPTF 77
Query: 141 LLFKNGEK 148
FK G+K
Sbjct: 78 QFFKKGQK 85
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 68 VVTKDSWEKSILNSDTP---VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT 124
+ TK+ W++ + + VL F A WCGP R + E++ Y L +++ D
Sbjct: 29 ITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPS-LMFLVIDVDE 87
Query: 125 DLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFY 161
+ +EIKA P ++G++ + +VG E +
Sbjct: 88 LSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELH 124
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
D V+V+F A+WCGP +M+ ++ +Y+ + V+ D +A + E+KA P
Sbjct: 19 GDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVI-FLEVDVDDAQDVASEAEVKATPTF 77
Query: 141 LLFKNGEK 148
FK G+K
Sbjct: 78 QFFKKGQK 85
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
D V+V+F A+WCGP +M+ ++ +Y+ + V+ D +A + E+K++P
Sbjct: 19 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVI-FLEVDVDDSQDVASESEVKSMPTF 77
Query: 141 LLFKNGEK 148
FK G+K
Sbjct: 78 QFFKKGQK 85
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD---T 124
VV +++ +++ VL+EFYA WCG C+ + + + +Y G+ + D
Sbjct: 11 VVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAN 70
Query: 125 DLTIAEDYEIKAVPVVLLFKNGEKRETV 152
D+T + Y+++ P + +G+K+ +
Sbjct: 71 DIT-NDQYKVEGFPTIYFAPSGDKKNPI 97
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T ++ + ++ SD LVEFYA WCG C+ + + A ++ VN D ++
Sbjct: 22 LTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSL 81
Query: 129 AEDYEIKAVPVVLLFK-NGEKRETVVGTMPKEFYIAAIERVLKS 171
Y ++ P + +F N K E G E + A L+S
Sbjct: 82 GGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRS 125
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
D V+V+F A+WCGPC+M+ ++ +Y+ + V+ + +A + E+K +P
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIF-LEVDVNDCQDVASECEVKCMPTF 77
Query: 141 LLFKNGEK 148
FK G+K
Sbjct: 78 QFFKKGQK 85
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEY---AGRLRCFMVNTDTDLTIAEDYEIKAVPVVL 141
+LVEFYA WCG C+ + + AG+ +R V+ + +A+ Y ++ P +
Sbjct: 27 LLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIK 86
Query: 142 LFKNGEKRETVVGTMPKEF 160
F+NG+ PKE+
Sbjct: 87 FFRNGDT------ASPKEY 99
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG---RLRCFMVNTDT 124
VV ++ + +L+ VL+EFYA WCG C+ + +E+ YA + R + D
Sbjct: 11 VVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDA 70
Query: 125 DLTIAEDYEIKAVPVVLLFKNGEKRETV 152
D EI+ P + L+ G K + V
Sbjct: 71 TANDVPD-EIQGFPTIKLYPAGAKGQPV 97
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
D V+V+F A+WCGP +M+ ++ +Y+ + V+ D +A + E+K++P
Sbjct: 30 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASECEVKSMPTF 88
Query: 141 LLFKNGEK 148
FK G+K
Sbjct: 89 QFFKKGQK 96
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGR---LRCFMVNTDTD 125
+TKD+++ + N+D +LVEFYA WCG C+ + ++ A E + R + V+
Sbjct: 12 LTKDNFDDVVNNADI-ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQ 70
Query: 126 LTIAEDYEIKAVPVVLLFKNG 146
+A+ +++ P + +F+ G
Sbjct: 71 TDLAKRFDVSGYPTLKIFRKG 91
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 66 RAVVTKDSWEKSI-LNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT 124
R + T EK I N ++V+F+A WCGPCR + ++ +A E + V+ D
Sbjct: 2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQ 60
Query: 125 DLTIAEDYEIKAVPVVLLFKNGEKRETVVG 154
+ A Y + A+P + K+G++ + G
Sbjct: 61 NEEAAAKYSVTAMPTFVFIKDGKEVDRFSG 90
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK 144
VLV+F+A+WCGPC+ + +++ IA E + V+ D + A+ Y + ++P + K
Sbjct: 26 VLVDFFATWCGPCQRLGQILPSIA-EANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVK 84
Query: 145 NGEKRETVVGTMPKEFYIAAIERV 168
K + T+ +F A + R+
Sbjct: 85 ---KEGNEIKTL-DQFVGADVSRI 104
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGR---LRCFMVNTDT 124
V+TK+++++ + ++D +LVEFYA WCG C+ + ++ A E + R + V+
Sbjct: 134 VLTKENFDEVVNDADI-ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA 192
Query: 125 DLTIAEDYEIKAVPVVLLFKNG 146
+ +A+ +++ P + +F+ G
Sbjct: 193 ETDLAKRFDVSGYPTLKIFRKG 214
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 60 LCVRESRAVVTKD--SWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGR--- 114
L V+E V+ + +++ + + DT VL+EFYA WCG C+ ++IA +
Sbjct: 9 LEVKEENGVLVLNDANFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPP 67
Query: 115 LRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERV 168
+ ++ + +A +++ P + + K G+ + G+ +E +A + V
Sbjct: 68 IPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVD-YEGSRTQEEIVAKVREV 120
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
D V+V+F A+WCGP +M+ ++ +Y+ + V+ D +A + E+K +P
Sbjct: 19 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASECEVKRMPTF 77
Query: 141 LLFKNGEK 148
FK G+K
Sbjct: 78 QFFKKGQK 85
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T ++ + +L T +V+FYA WCGPC+ + +A G++R V+
Sbjct: 8 LTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQT 67
Query: 129 AEDYEIKAVPVVLLFKNGEKRETV 152
+ IKA P V L++ ++++
Sbjct: 68 CQKAGIKAYPSVKLYQYERAKKSI 91
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 73 SWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDY 132
+W + + +S PV+V FY+ C C+ +E A EY +N T+ AE Y
Sbjct: 15 TWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPWTAEKY 74
Query: 133 EIKAVPVVLLFKNGEKRETVVGTM 156
++ P F +G VG +
Sbjct: 75 GVQGTPTFKFFCHGRPVWEQVGQI 98
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 76 KSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIK 135
++I++ D + F A WCGPC+ + R +++IA E+ ++ V+ D + I +
Sbjct: 31 RNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVL 89
Query: 136 AVPVVLLFKNGEKRETVVGTMP 157
+P ++ ++G+ V+G P
Sbjct: 90 QLPTFIIARSGKMLGHVIGANP 111
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
D V+V+F A+WCGPC+M+ ++ +Y+ + V+ D +A + E+K +P
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIF-LEVDVDDXQDVASEXEVKCMPTF 77
Query: 141 LLFKNGEK 148
FK G+K
Sbjct: 78 QFFKKGQK 85
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 79 LNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVP 138
L + + ++V F+A W C ++ V+ E+A E ++ + + ++E YEI +VP
Sbjct: 29 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEKYEISSVP 87
Query: 139 VVLLFKNGEKRETVVGTMPKEF 160
L FKN +K + + G E
Sbjct: 88 TFLFFKNSQKIDRLDGAHAPEL 109
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 79 LNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVP 138
L + + ++V F+A W C ++ V+ E+A E ++ + + ++E YEI +VP
Sbjct: 35 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEKYEISSVP 93
Query: 139 VVLLFKNGEKRETVVGTMPKEF 160
L FKN +K + + G E
Sbjct: 94 TFLFFKNSQKIDRLDGAHAPEL 115
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%)
Query: 72 DSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAED 131
+++E+ I + LV F C C+ V V++E+ Y + V+ + + T+ +
Sbjct: 12 NTFEQLIYDEGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQR 71
Query: 132 YEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 171
+ +K VP +L FK+GE + G + + I VL+
Sbjct: 72 FSLKGVPQILYFKDGEYKGKXAGDVEDDEVEQXIADVLED 111
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 78 ILNSDTPVLVEFYASWCGPCRMVHRVIDE----IAGEYAGRLRCFMVNTDTDL--TIAED 131
ILN+ LV FYA WC + +H + +E I E+ + D D IA+
Sbjct: 18 ILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQR 77
Query: 132 YEIKAVPVVLLFKNG--EKRE 150
Y I P + LF+NG KRE
Sbjct: 78 YRISKYPTLKLFRNGXXXKRE 98
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 69 VTKDS-WEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLT 127
V KD+ W D PV+++ + WCGPC+ + +++A EY + + + T
Sbjct: 11 VNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKT 70
Query: 128 IAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERV 168
+A++ I+ VP + K +VVG + Y +E +
Sbjct: 71 LAKELGIRVVPTFKILKEN----SVVGEVTGAKYDKLLEAI 107
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIA-GEYAG--RLRCFMVNTDT 124
+T+++++ +I T ++FYA WCG C+ + +E++ E+ G ++ V+
Sbjct: 9 ALTENNFDDTIAEGIT--FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA 66
Query: 125 DLTIAEDYEIKAVPVVLLFKNGEK 148
+ I Y ++ P +LLF+ G+K
Sbjct: 67 ERNICSKYSVRGYPTLLLFRGGKK 90
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 69 VTKDS-WEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLT 127
V KD+ W D PV+++ + WCGPC+ + +++A EY + + + T
Sbjct: 23 VNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKT 82
Query: 128 IAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERV 168
+A++ I+ VP + K +VVG + Y +E +
Sbjct: 83 LAKELGIRVVPTFKIL----KENSVVGEVTGAKYDKLLEAI 119
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIA-GEYAG--RLRCFMVNTDT 124
+T+++++ +I T ++FYA WCG C+ + +E++ E+ G ++ V+
Sbjct: 11 ALTENNFDDTIAEGIT--FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA 68
Query: 125 DLTIAEDYEIKAVPVVLLFKNGEK 148
+ I Y ++ P +LLF+ G+K
Sbjct: 69 ERNICSKYSVRGYPTLLLFRGGKK 92
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIA-GEYAG--RLRCFMVNTDTD 125
+T+++++ +I T ++FYA WCG C+ + +E++ E+ G ++ V+ +
Sbjct: 5 LTENNFDDTIAEGIT--FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE 62
Query: 126 LTIAEDYEIKAVPVVLLFKNGEK 148
I Y ++ P +LLF+ G+K
Sbjct: 63 RNICSKYSVRGYPTLLLFRGGKK 85
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 69 VTKDSWEKSILNSDTP--VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL 126
+T D++E I ++ + +LVEF+A WCG C+ + + A G + V+ +
Sbjct: 6 LTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANT 65
Query: 127 TIAEDYEIKAVPVVLLFKNGEK 148
Y + P + +F++GE+
Sbjct: 66 NTCNKYGVSGYPTLKIFRDGEE 87
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 17/78 (21%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAE-DYE--------IK 135
VLV +YA WCG C+ + E+A YA N +D+ IA+ D+ I+
Sbjct: 379 VLVLYYAPWCGHCKRLAPTYQELADTYA--------NATSDVLIAKLDHTENDVRGVVIE 430
Query: 136 AVPVVLLFKNGEKRETVV 153
P ++L+ G+K E+VV
Sbjct: 431 GYPTIVLYPGGKKSESVV 448
Score = 32.7 bits (73), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 24/108 (22%)
Query: 64 ESRAVV--TKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVN 121
E AVV DS+ + I + D VL EF+A WCG C+ +A EY +
Sbjct: 12 EDSAVVKLATDSFNEYIQSHDL-VLAEFFAPWCGHCK-------NMAPEYVKAAETLV-- 61
Query: 122 TDTDLTIAE-----------DYEIKAVPVVLLFKNGEKRETVVGTMPK 158
+ ++T+A+ ++ I P + +FKN + ++ P+
Sbjct: 62 -EKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPR 108
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140
D V+V+F A+W GP +M+ ++ +Y+ + V+ D +A + E+K +P
Sbjct: 19 GDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIF-LEVDVDDCQDVASECEVKCMPTF 77
Query: 141 LLFKNGEK 148
FK G+K
Sbjct: 78 QFFKKGQK 85
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD-TDL 126
VV +++++ + N + VL+EFYA WCG C+ + E+ + + + D T
Sbjct: 31 VVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN 90
Query: 127 TIAEDYEIKAVPVV 140
+ YE++ P +
Sbjct: 91 DVPSPYEVRGFPTI 104
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD-TDL 126
VV +++++ + N + VL+EFYA WCG C+ + E+ + + + D T
Sbjct: 356 VVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN 415
Query: 127 TIAEDYEIKAVPVV 140
+ YE++ P +
Sbjct: 416 DVPSPYEVRGFPTI 429
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 69 VTKDSWEKSILNSDTP--VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL 126
+T D++E I ++ + +LVEF+A WCG + + + A G + V+ +
Sbjct: 6 LTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANT 65
Query: 127 TIAEDYEIKAVPVVLLFKNGEK 148
Y + P + +F++GE+
Sbjct: 66 NTCNKYGVSGYPTLKIFRDGEE 87
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 33/76 (43%)
Query: 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLT 127
V+ ++E + V VEFYA WCG C+ + + D++ Y + D+
Sbjct: 11 VLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTAN 70
Query: 128 IAEDYEIKAVPVVLLF 143
E ++ + P + F
Sbjct: 71 EVEAVKVHSFPTLKFF 86
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 33/76 (43%)
Query: 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLT 127
V+ ++E + V VEFYA WCG C+ + + D++ Y + D+
Sbjct: 253 VLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTAN 312
Query: 128 IAEDYEIKAVPVVLLF 143
E ++ + P + F
Sbjct: 313 EVEAVKVHSFPTLKFF 328
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 69 VTKDS-WEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLT 127
V KD+ W D PV+++ + WCGP + + +++A EY + + + T
Sbjct: 10 VNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKT 69
Query: 128 IAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERV 168
+A++ I+ VP + K +VVG + Y +E +
Sbjct: 70 LAKELGIRVVPTFKIL----KENSVVGEVTGAKYDKLLEAI 106
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 25/88 (28%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAGR------------------------LRCFMV 120
+ ++ +A+WCGPCR + E+ +YAG+ L+ +
Sbjct: 33 IYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQL 92
Query: 121 NTDTDLTIAEDYEIKAVP-VVLLFKNGE 147
+ TD T + Y I +P +LL ++G+
Sbjct: 93 HMGTDRTFMDAYLINGIPRFILLDRDGK 120
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT 124
+LV +A+WC PCR +DE+ G+ +G +N DT
Sbjct: 63 LLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDT 103
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 60 LCVRESRAV--VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGR--- 114
L V+E V + +++ + + DT VL+EFYA WCG C+ ++IA
Sbjct: 11 LEVKEENGVWVLNDGNFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPP 69
Query: 115 LRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERV 168
+ ++ + +A +++ P + + K G+ + G+ +E +A + V
Sbjct: 70 IAVAKIDATSASMLASKFDVSGYPTIKILKKGQAVD-YDGSRTQEEIVAKVREV 122
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 77 SILNSDTPVLVEFYASWCGPCR----MVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDY 132
SI N ++ F+ SWC PC+ D + + +VN++ + + ED+
Sbjct: 29 SIPNKGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDF 88
Query: 133 EIKA----VPVVLLFKNGEKRETVVGTMPKEFYI 162
IKA P+VL K +E + T+P F +
Sbjct: 89 -IKANKLTFPIVLDSKGELXKEYHIITIPTSFLL 121
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 35.8 bits (81), Expect = 0.012, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI 128
+T ++ + +L T +V+FYA W GP + + +A G++R V+
Sbjct: 662 LTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQT 721
Query: 129 AEDYEIKAVPVVLLFKNGEKRETV 152
+ IKA P V L++ ++++
Sbjct: 722 CQKAGIKAYPSVKLYQYERAKKSI 745
Score = 30.0 bits (66), Expect = 0.64, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 84 PVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLF 143
P LV+F+A W P R + + + + G+L+ ++ + Y I+A P ++F
Sbjct: 457 PWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVF 516
Query: 144 KNGEKRE 150
E
Sbjct: 517 NQSSIHE 523
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 82 DTPVLVEFYASWCGPCRMVHRVI--DEIAGEYAGRLRCFMVNTDTDLTIAEDYEIK 135
D + V+ + +WCGPC+ + +V+ D + +Y R VN D+ E E++
Sbjct: 27 DKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR---HFVNLKMDMEKGEGVELR 79
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 24/99 (24%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEY---------------AGRLRCFMVNTDTDLTIA 129
V ++F+ASWCGPCR ++ +Y G F+ + T+A
Sbjct: 31 VYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGDAXKFLAQVPAEFTVA 90
Query: 130 ED--------YEIKAVPVVLLF-KNGEKRETVVGTMPKE 159
D Y +K P L +NG+ VG P +
Sbjct: 91 FDPKGQTPRLYGVKGXPTSFLIDRNGKVLLQHVGFRPAD 129
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT--D 125
V+T ++W + +L D ++EFYA WC C+ + + A E+ L + D
Sbjct: 11 VITDENW-RELLEGDW--MIEFYAPWCPACQNLQPEWESFA-EWGEDLEVNIAKVDVTEQ 66
Query: 126 LTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 171
++ + I A+P + K+GE R K+F ++ KS
Sbjct: 67 PGLSGRFIINALPTIYHCKDGEFRRYQGPRTKKDFINFISDKEWKS 112
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEY-AGRLRCFMVNTD--- 123
++ D+ ++L S + VEF+ASWCG C +A + A R ++ D
Sbjct: 16 LLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAE 75
Query: 124 -TDLTIAEDYEIKAVPVVLLF 143
T+ + D+ I P V F
Sbjct: 76 ETNSAVCRDFNIPGFPTVRFF 96
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 34/85 (40%)
Query: 79 LNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVP 138
+NS V FY+ C C + E A E G LR VN D + + + P
Sbjct: 111 VNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYP 170
Query: 139 VVLLFKNGEKRETVVGTMPKEFYIA 163
+ +F++G G KE +A
Sbjct: 171 SLFIFRSGMAAVKYNGDRSKESLVA 195
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 74 WEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGE 110
++ +L PVL+ +A+WC CR H+ +++++ +
Sbjct: 60 YQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ 96
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEY-----AGRLRCFMVNT 122
++ DS ++L S + VEF+ASWCG E+A + A L
Sbjct: 16 LLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAE 75
Query: 123 DTDLTIAEDYEIKAVPVVLLF----KNG 146
+T+ + ++ I P V F KNG
Sbjct: 76 ETNSAVCREFNIAGFPTVRFFQAFTKNG 103
>pdb|2G0F|A Chain A, Crystal Structure Of P144a Mutant Of E.Coli Ccmg Protein
Length = 168
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 75 EKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGE 110
+ +L PVL+ +A+WC CR H+ +++++ +
Sbjct: 44 QADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ 79
>pdb|1FO5|A Chain A, Solution Structure Of Reduced Mj0307
Length = 85
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 89 FYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEK 148
F + C C RV++E+A E + +N + A +Y I AVP +++ NG+
Sbjct: 9 FTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV 66
Query: 149 RETVVGTMPKEFYIAAIERVL 169
+G KE + AI++ L
Sbjct: 67 E--FIGAPTKEALVEAIKKRL 85
>pdb|2B1K|A Chain A, Crystal Structure Of E. Coli Ccmg Protein
Length = 168
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 75 EKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGE 110
+ +L PVL+ +A+WC CR H+ +++++ +
Sbjct: 44 QADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ 79
>pdb|2B1L|A Chain A, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
pdb|2B1L|B Chain B, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
Length = 129
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 75 EKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGE 110
+ +L PVL+ +A+WC CR H+ +++++ +
Sbjct: 5 QADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ 40
>pdb|1A8L|A Chain A, Protein Disulfide Oxidoreductase From Archaeon Pyrococcus
Furiosus
Length = 226
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 72 DSWEKSILNSDTPV-LVEFYASWCGPC----RMVHRVIDEIAGEYAGRLRCFMVNTDTDL 126
D +++I N D V ++ F C C RM H+ E G++ MV
Sbjct: 123 DETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP 182
Query: 127 TIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAI 165
A+ Y + AVP +++ NGE R G P++ ++ +
Sbjct: 183 EWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKL 221
>pdb|1J08|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|E Chain E, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|F Chain F, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|G Chain G, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|H Chain H, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
Length = 226
Score = 32.7 bits (73), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 59 VLCVRESRAVVTKDSWEK-SILNSDTPVLVEFYASWCGPC----RMVHRVIDEIAGEYAG 113
++ V + + +DS E+ S ++ D +L+ F C C RM H+ E G
Sbjct: 111 IVDVSKGDTDLMQDSKEEVSKIDKDVRILI-FVTPTCPYCPLAVRMAHKFAIENTKAGKG 169
Query: 114 RLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAI 165
++ MV A+ Y + AVP +++ NGE + G P++ ++ +
Sbjct: 170 KILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKL 221
>pdb|2H30|A Chain A, Crystal Structure Of The N-Terminal Domain Of Pilb From
Neisseria Gonorrhoeae
Length = 164
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 30/117 (25%)
Query: 79 LNSDTPVLVEFYASWCGPC---------------------------RMVHRVID-EIAGE 110
L D P L++F+ASWC C +H D E
Sbjct: 35 LKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKW 94
Query: 111 YAG-RLRCFMVNTDTDLTIAEDYEIKAVPV-VLLFKNGEKRETVVGTMPKEFYIAAI 165
YAG V TD TIA++ I P L+ K+G+ + V G++ + +A I
Sbjct: 95 YAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALI 151
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL--TIAEDYEIKAVP 138
++ ++++F A WC PC + Y L V+ D D+ + + + IKA+P
Sbjct: 39 QNSSIVIKFGAVWCKPCNKIKEYFKNQLNYYYVTL----VDIDVDIHPKLNDQHNIKALP 94
Query: 139 VVLLFKNGEKRETVVGTM 156
+ N +V T+
Sbjct: 95 TFEFYFNLNNEWVLVHTV 112
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein
From Neisseria Meningitidis Serogroup B
Length = 151
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 71 KDSWEKSILNSDTPV-LVEFYASWCGPCR 98
KD+ +S+ + PV +V +A+WCGPCR
Sbjct: 12 KDNTPQSLQSLKAPVRIVNLWATWCGPCR 40
>pdb|4EJR|A Chain A, Crystal Structure Of Major Capsid Protein S Domain From
Rabbit Hemorrhagic Disease Virus
pdb|4EJR|B Chain B, Crystal Structure Of Major Capsid Protein S Domain From
Rabbit Hemorrhagic Disease Virus
Length = 255
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 80 NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPV 139
N T VL + YA W G M R I +G + GRL ++ + I E++ P
Sbjct: 125 NPFTAVLSQMYAGWAG--GMQFRFIVAGSGVFGGRLVAAVI--PPGIEIGPGLEVRQFPH 180
Query: 140 VLLFKNGEKRETVVGTMPK 158
V++ + E V TMP
Sbjct: 181 VVI--DARSLEPVTITMPD 197
>pdb|3ZUE|A Chain A, Rabbit Hemorrhagic Disease Virus (Rhdv)capsid Protein
pdb|3ZUE|B Chain B, Rabbit Hemorrhagic Disease Virus (Rhdv)capsid Protein
pdb|3ZUE|C Chain C, Rabbit Hemorrhagic Disease Virus (Rhdv)capsid Protein
Length = 579
Score = 30.8 bits (68), Expect = 0.41, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 80 NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPV 139
N T VL + YA W G M R I +G + GRL ++ + I E++ P
Sbjct: 100 NPFTAVLSQMYAGWAGG--MQFRFIVAGSGVFGGRLVAAVI--PPGIEIGPGLEVRQFPH 155
Query: 140 VLLFKNGEKRETVVGTMP 157
V++ + E V TMP
Sbjct: 156 VVI--DARSLEPVTNTMP 171
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEY--AGRLRCFMVNTDTDLTIAEDYEIKAVPVVLL 142
V + F ASWC PCR V+ E ++ A +++ D + + DY K + L
Sbjct: 31 VFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALP 90
Query: 143 FKNGEKRETVVGTMPKEFYIAAIERVL 169
F ++R T V + K F + +I ++
Sbjct: 91 F---DQRST-VSELGKTFGVESIPTLI 113
>pdb|1Z5Y|E Chain E, Crystal Structure Of The Disulfide-linked Complex Between
The N-terminal Domain Of The Electron Transfer Catalyst
Dsbd And The Cytochrome C Biogenesis Protein Ccmg
Length = 149
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 75 EKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD 125
+ +L PVL+ +A+WC R H+ +++++ A +R +N D
Sbjct: 19 QADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLS---AQGIRVVGMNYKDD 66
>pdb|2FY6|A Chain A, Structure Of The N-Terminal Domain Of Neisseria
Meningitidis Pilb
Length = 143
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 30/117 (25%)
Query: 79 LNSDTPVLVEFYASWCGPC---------------------------RMVHRVID-EIAGE 110
L D P L++F+ASWC C +H D +
Sbjct: 20 LKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKW 79
Query: 111 YAG-RLRCFMVNTDTDLTIAEDYEIKAVPV-VLLFKNGEKRETVVGTMPKEFYIAAI 165
YAG V TD TIA+ I P L+ K+G+ + V G++ + +A I
Sbjct: 80 YAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALI 136
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAG---RLRCFMVNTDTDLTIAEDYEIKAVPVVL 141
V+V F+A+WC PCR + AG R C ++ + + E + + +
Sbjct: 31 VIVNFWATWCPPCREEIPSXXRLNAAXAGKPFRXLCVSIDEGGKVAVEEFFRKTGFTLPV 90
Query: 142 LFKNGEKRETVVGT--MPKEFYIAAIERVLK 170
L ++ + GT +P+ F I +LK
Sbjct: 91 LLDADKRVGKLYGTTGVPETFVIDRHGVILK 121
>pdb|2JZR|A Chain A, Solution Structure Of The Oxidized Form (Cys67-Cys70) Of
The N-Terminal Domain Of Pilb From N. Meningitidis.
pdb|2JZS|A Chain A, Solution Structure Of The Reduced Form Of The N-Terminal
Domain Of Pilb From N. Meningitidis.
pdb|2K9F|A Chain A, Structural Features Of The Complex Between The Dsbd N-
Terminal And The Pilb N-Terminal Domains From Neisseria
Meningitidis
Length = 144
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 30/117 (25%)
Query: 79 LNSDTPVLVEFYASWCGPC---------------------------RMVHRVID-EIAGE 110
L D P L++F+ASWC C +H D +
Sbjct: 21 LKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKW 80
Query: 111 YAG-RLRCFMVNTDTDLTIAEDYEIKAVPV-VLLFKNGEKRETVVGTMPKEFYIAAI 165
YAG V TD TIA+ I P L+ K+G+ + V G++ + +A I
Sbjct: 81 YAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALI 137
>pdb|3J1P|A Chain A, Atomic Model Of Rabbit Hemorrhagic Disease Virus
pdb|3J1P|B Chain B, Atomic Model Of Rabbit Hemorrhagic Disease Virus
pdb|3J1P|C Chain C, Atomic Model Of Rabbit Hemorrhagic Disease Virus
Length = 579
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 80 NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPV 139
N T VL + YA W G M R I +G + GRL ++ + I E++ P
Sbjct: 100 NPFTAVLSQMYAGWAGG--MQFRFIVAGSGVFGGRLVAAVI--PPGIEIGPGLEVRQFPH 155
Query: 140 VLLFKNGEKRETVVGTMP 157
V++ + E V TMP
Sbjct: 156 VVI--DARSLEPVTITMP 171
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 27/115 (23%)
Query: 69 VTKDSWEKSILNSD---TPVLVEFYASWCGPCR-----MVHR----------VIDEIAGE 110
V +D+ K I SD V + F+ +WC PC+ M ++ ++ GE
Sbjct: 10 VLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVAVNVGE 69
Query: 111 YAGRLRCFM--------VNTDTDLTIAEDYEIKAVPVVLLFK-NGEKRETVVGTM 156
+ FM V DTD + + Y++ +P L G+ + V GTM
Sbjct: 70 SKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTM 124
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 27/115 (23%)
Query: 69 VTKDSWEKSILNSD---TPVLVEFYASWCGPCR-----MVHR----------VIDEIAGE 110
V +D+ K I SD V + F+ +WC PC+ M ++ ++ GE
Sbjct: 10 VLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGE 69
Query: 111 YAGRLRCFM--------VNTDTDLTIAEDYEIKAVPVVLLFK-NGEKRETVVGTM 156
+ FM V DTD + + Y++ +P L G+ + V GTM
Sbjct: 70 SKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTM 124
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 84 PVLVEFYASWCGPCRMVHRV------IDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAV 137
PV+++ YA WC C+ + + + + N D+ + + + +
Sbjct: 33 PVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGL 92
Query: 138 PVVLLFKNGEKRE----TVVGTMPKEFYIAAI 165
P +L F +G+ +E V G M E + A +
Sbjct: 93 PTILFF-DGQGQEHPQARVTGFMDAETFSAHL 123
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 84 PVLVEFYASWCGPCRMVHRV------IDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAV 137
PV+++ YA WC C+ + + + + N D+ + + + +
Sbjct: 30 PVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGL 89
Query: 138 PVVLLFKNGEKRE----TVVGTMPKEFYIAAI 165
P +L F +G+ +E V G M E + A +
Sbjct: 90 PTILFF-DGQGQEHPQARVTGFMDAETFSAHL 120
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 85 VLVEFYASWCGPCR 98
V+++F ASWCG CR
Sbjct: 36 VMLQFTASWCGVCR 49
>pdb|3Q4F|C Chain C, Crystal Structure Of Xrcc4XLF-Cernunnos Complex
pdb|3Q4F|D Chain D, Crystal Structure Of Xrcc4XLF-Cernunnos Complex
pdb|3Q4F|G Chain G, Crystal Structure Of Xrcc4XLF-Cernunnos Complex
pdb|3Q4F|H Chain H, Crystal Structure Of Xrcc4XLF-Cernunnos Complex
Length = 186
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 44 KNATFKAPNRSLSLKVLCVRESRAVVTKDSWEKSILNSDTPVLVEFYASWCGPC--RMVH 101
+N F+ R +S L S + SWEK++ + L + +++W G +
Sbjct: 23 ENLYFQGMERKISRIHLVSEPSITHFLQVSWEKTLESGFVITLTDGHSAWTGTVSESEIS 82
Query: 102 RVIDEIA---GEYAGRLR 116
+ D++A G+Y G LR
Sbjct: 83 QEADDMAMEKGKYVGELR 100
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange
Protein, Thioredoxin Family Protein From Chlorobium
Tepidum Tls
Length = 165
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 86 LVEFYASWCGPCR 98
+V F+A+WC PCR
Sbjct: 38 IVNFFATWCPPCR 50
>pdb|3KH7|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Reduced Ccmg From Pseudomonas Aeruginosa
pdb|3KH9|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Oxidized Ccmg From Pseudomonas Aeruginosa
Length = 176
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 84 PVLVEFYASWCGPCRMVHRVIDEIA------------GEYAGRLRC--------FMVNTD 123
P LV + +WC CR+ H + +A + A ++ + +D
Sbjct: 60 PALVNVWGTWCPSCRVEHPELTRLAEQGVVIYGINYKDDNAAAIKWLNELHNPYLLSISD 119
Query: 124 TDLTIAEDYEIKAVP-VVLLFKNGEKRETVVGTMPKEFY 161
D T+ D + P L+ K G R +VG + ++ +
Sbjct: 120 ADGTLGLDLGVYGAPETYLIDKQGIIRHKIVGVVDQKVW 158
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|B Chain B, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|C Chain C, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|D Chain D, Structure Of Bacillus Subtilis Citrate Synthase
Length = 363
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 119 MVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 169
+ D DL +A E +A+ ++ ++K G K T V EFY AA+ R +
Sbjct: 271 VAGNDRDLDLALHVEAEAIRLLEIYKPGRKLYTNV-----EFYAAAVMRAI 316
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 14 FTSAHFAIPRVSSFPSHTPNKLSFPSHFYAKNATFKAPNRSLSLKVLC-VRESRAVVTKD 72
+ + I RV F + NK + P N T + + ++++C V + +
Sbjct: 187 YLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEV-DLGSQIQLICNVTGQLSDIAYW 245
Query: 73 SWEKSILNSDTPVLVEFYASWCGPCRMVHRV------IDEIAGE-YAGRLRCFMVNT 122
W S+++ D PVL E Y S P I EI Y CF NT
Sbjct: 246 KWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNT 302
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 14 FTSAHFAIPRVSSFPSHTPNKLSFPSHFYAKNATFKAPNRSLSLKVLC-VRESRAVVTKD 72
+ + I RV F + NK + P N T + + ++++C V + +
Sbjct: 185 YLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEV-DLGSQIQLICNVTGQLSDIAYW 243
Query: 73 SWEKSILNSDTPVLVEFYASWCGPCRMVHRV------IDEIAGE-YAGRLRCFMVNT 122
W S+++ D PVL E Y S P I EI Y CF NT
Sbjct: 244 KWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNT 300
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 14 FTSAHFAIPRVSSFPSHTPNKLSFPSHFYAKNATFKAPNRSLSLKVLC-VRESRAVVTKD 72
+ + I RV F + NK + P N T + + ++++C V + +
Sbjct: 182 YLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEV-DLGSQIQLICNVTGQLSDIAYW 240
Query: 73 SWEKSILNSDTPVLVEFYASWCGPCRMVHRV------IDEIAGE-YAGRLRCFMVNT 122
W S+++ D PVL E Y S P I EI Y CF NT
Sbjct: 241 KWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNT 297
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 85 VLVEFYASWCGPCRMVHRVIDEIAGEY-AGRLRCFMVNTD 123
VLV F+ASWC CR D + + G L VN +
Sbjct: 44 VLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLAVNVE 83
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 14 FTSAHFAIPRVSSFPSHTPNKLSFPSHFYAKNATFKAPNRSLSLKVLC-VRESRAVVTKD 72
+ + I RV F + NK + P N T + + ++++C V + +
Sbjct: 185 YLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEV-DLGSQIQLICNVTGQLSDIAYW 243
Query: 73 SWEKSILNSDTPVLVEFYASWCGPCRMVHRV------IDEIAGE-YAGRLRCFMVNT 122
W S+++ D PVL E Y S P I EI Y CF NT
Sbjct: 244 KWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNT 300
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 70 TKDSWEKSILNSDTPVLVEFYASWCGPCRMV 100
T + +K S P++V + SWCG C+ +
Sbjct: 27 TLEDGKKEAAASGLPLMVIIHKSWCGACKAL 57
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 70 TKDSWEKSILNSDTPVLVEFYASWCGPCRMV 100
T + +K S P++V + SWCG C+ +
Sbjct: 34 TLEDGKKEAAASGLPLMVIIHKSWCGACKAL 64
>pdb|1NHO|A Chain A, Structural And Functional Characterization Of A
Thioredoxin-Like Protein From Methanobacterium
Thermoautotrophicum
Length = 85
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 89 FYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEK 148
F + C C M V+DE E+ ++ ++ D A +Y + AVP + + NG
Sbjct: 8 FTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV 65
Query: 149 R 149
R
Sbjct: 66 R 66
>pdb|3IB3|A Chain A, Crystal Structure Of Sacol2612 - CoceNOND FAMILY HYDROLASE
FROM Staphylococcus Aureus
pdb|3IB3|B Chain B, Crystal Structure Of Sacol2612 - CoceNOND FAMILY HYDROLASE
FROM Staphylococcus Aureus
pdb|3III|A Chain A, 1.95 Angstrom Crystal Structure Of Coce/nond Family
Hydrolase (sacol2612) From Staphylococcus Aureus
Length = 560
Score = 26.6 bits (57), Expect = 6.8, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 95 GPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAED----YEIKAVPVVLLFKNGEKRE 150
G R+ HR +D+ A +T+L +++D EI+ +P LFK GE E
Sbjct: 455 GWLRVSHRELDQEKSSIAQPWH----KHETELKLSQDEIVPVEIELLPSGTLFKQGETLE 510
Query: 151 TVV 153
VV
Sbjct: 511 VVV 513
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 84 PVLVEFYASWCGPCRMVHRVIDEIAGEYA---GR-----LRCFMVNTDTDLTIAEDYEIK 135
P +V FY CG CR + AG G+ VN +++ + Y+I
Sbjct: 44 PWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDIN 103
Query: 136 AVPVVLLF 143
VP + F
Sbjct: 104 FVPRLFFF 111
>pdb|3IA1|A Chain A, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
pdb|3IA1|B Chain B, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
Length = 154
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 84 PVLVEFYASWCGPCRM----VHRVIDEIA 108
P ++ F+ASWC C+ +HRV +E
Sbjct: 32 PAVIVFWASWCTVCKAEFPGLHRVAEETG 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,625,894
Number of Sequences: 62578
Number of extensions: 173526
Number of successful extensions: 601
Number of sequences better than 100.0: 187
Number of HSP's better than 100.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 192
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)