Query 030784
Match_columns 171
No_of_seqs 192 out of 1913
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:31:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 100.0 1.6E-30 3.5E-35 183.5 14.0 108 64-171 43-150 (150)
2 cd03065 PDI_b_Calsequestrin_N 99.9 3.2E-26 7E-31 158.8 12.7 106 64-170 9-120 (120)
3 cd02954 DIM1 Dim1 family; Dim1 99.9 2.1E-25 4.5E-30 152.9 14.5 88 71-158 2-90 (114)
4 PF00085 Thioredoxin: Thioredo 99.9 3.3E-25 7.2E-30 149.1 15.2 103 66-168 1-103 (103)
5 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1E-25 2.2E-30 155.1 12.9 102 63-164 8-112 (113)
6 PHA02278 thioredoxin-like prot 99.9 6.3E-25 1.4E-29 148.9 13.4 94 70-164 3-100 (103)
7 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 4.2E-25 9.2E-30 149.1 12.0 99 65-164 2-100 (101)
8 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 4.5E-25 9.7E-30 149.6 12.2 101 65-165 2-104 (104)
9 PRK09381 trxA thioredoxin; Pro 99.9 1.7E-24 3.8E-29 147.9 14.7 108 63-170 2-109 (109)
10 KOG0907 Thioredoxin [Posttrans 99.9 1.7E-24 3.7E-29 147.1 12.1 93 74-168 13-105 (106)
11 COG3118 Thioredoxin domain-con 99.9 1.3E-24 2.8E-29 168.5 11.4 105 66-170 25-131 (304)
12 cd02956 ybbN ybbN protein fami 99.9 5.2E-24 1.1E-28 142.2 12.6 94 73-166 2-96 (96)
13 cd02963 TRX_DnaJ TRX domain, D 99.9 4.1E-24 8.8E-29 146.9 12.2 102 67-168 7-111 (111)
14 PLN00410 U5 snRNP protein, DIM 99.9 1.1E-23 2.4E-28 149.5 14.1 101 70-170 10-121 (142)
15 cd02985 TRX_CDSP32 TRX family, 99.9 1.8E-23 4E-28 141.8 13.5 95 70-166 2-100 (103)
16 PRK10996 thioredoxin 2; Provis 99.9 5.4E-23 1.2E-27 146.7 15.1 104 65-169 36-139 (139)
17 cd02996 PDI_a_ERp44 PDIa famil 99.9 3.5E-23 7.5E-28 141.4 12.5 100 65-165 2-108 (108)
18 cd02948 TRX_NDPK TRX domain, T 99.9 8.1E-23 1.8E-27 138.4 14.0 97 69-168 5-102 (102)
19 cd02965 HyaE HyaE family; HyaE 99.9 4.2E-23 9E-28 140.7 12.1 97 65-162 11-109 (111)
20 cd03002 PDI_a_MPD1_like PDI fa 99.9 4E-23 8.7E-28 140.8 11.8 101 66-166 2-109 (109)
21 cd02999 PDI_a_ERp44_like PDIa 99.9 4.8E-23 1E-27 139.1 11.3 90 74-165 9-100 (100)
22 cd02994 PDI_a_TMX PDIa family, 99.9 1.3E-22 2.8E-27 136.7 12.7 99 65-167 2-101 (101)
23 PTZ00443 Thioredoxin domain-co 99.9 1.8E-22 3.8E-27 154.0 14.4 107 64-170 30-140 (224)
24 cd03005 PDI_a_ERp46 PDIa famil 99.9 1.6E-22 3.4E-27 136.1 12.5 98 66-165 2-102 (102)
25 TIGR01068 thioredoxin thioredo 99.9 2.7E-22 5.9E-27 134.3 13.4 101 69-169 1-101 (101)
26 cd02986 DLP Dim1 family, Dim1- 99.9 3.6E-22 7.9E-27 136.1 13.6 98 71-168 2-110 (114)
27 cd03001 PDI_a_P5 PDIa family, 99.9 2.9E-22 6.3E-27 135.1 12.9 100 66-165 2-102 (103)
28 cd02957 Phd_like Phosducin (Ph 99.9 1.6E-22 3.5E-27 139.3 9.5 91 64-156 4-96 (113)
29 cd02950 TxlA TRX-like protein 99.9 1.6E-21 3.4E-26 139.6 13.6 98 72-170 11-111 (142)
30 cd02949 TRX_NTR TRX domain, no 99.9 2.1E-21 4.6E-26 130.2 13.2 93 74-166 5-97 (97)
31 cd02997 PDI_a_PDIR PDIa family 99.9 1.7E-21 3.7E-26 131.4 12.8 99 66-165 2-104 (104)
32 cd02962 TMX2 TMX2 family; comp 99.9 2E-21 4.3E-26 140.1 13.9 91 64-154 28-126 (152)
33 TIGR01126 pdi_dom protein disu 99.9 9.5E-22 2.1E-26 132.0 11.5 100 69-169 1-102 (102)
34 cd02984 TRX_PICOT TRX domain, 99.9 2.6E-21 5.6E-26 129.2 12.8 94 71-165 2-96 (97)
35 cd02989 Phd_like_TxnDC9 Phosdu 99.9 4E-21 8.7E-26 132.4 13.0 90 65-156 5-95 (113)
36 cd02995 PDI_a_PDI_a'_C PDIa fa 99.9 3E-21 6.5E-26 130.1 11.5 99 66-165 2-104 (104)
37 cd02998 PDI_a_ERp38 PDIa famil 99.9 3E-21 6.5E-26 130.2 10.8 100 66-165 2-105 (105)
38 cd02993 PDI_a_APS_reductase PD 99.9 5.9E-21 1.3E-25 130.7 12.1 101 65-165 2-109 (109)
39 cd03000 PDI_a_TMX3 PDIa family 99.9 1.2E-20 2.7E-25 127.9 11.9 94 72-168 7-103 (104)
40 PTZ00051 thioredoxin; Provisio 99.9 2.2E-20 4.9E-25 125.0 12.8 93 67-162 3-96 (98)
41 cd02987 Phd_like_Phd Phosducin 99.8 1.2E-20 2.5E-25 139.4 11.7 91 64-156 62-155 (175)
42 cd02975 PfPDO_like_N Pyrococcu 99.8 9.1E-21 2E-25 130.7 10.3 98 71-170 12-111 (113)
43 cd02953 DsbDgamma DsbD gamma f 99.8 7E-21 1.5E-25 129.0 9.5 94 72-166 2-104 (104)
44 cd02961 PDI_a_family Protein D 99.8 3.6E-20 7.8E-25 123.3 10.6 97 68-165 2-101 (101)
45 KOG0908 Thioredoxin-like prote 99.8 3.6E-20 7.7E-25 140.1 10.0 98 70-169 8-106 (288)
46 cd02951 SoxW SoxW family; SoxW 99.8 2.3E-19 5.1E-24 125.4 13.1 93 78-170 9-120 (125)
47 TIGR01295 PedC_BrcD bacterioci 99.8 6.3E-19 1.4E-23 123.0 13.2 98 66-166 8-121 (122)
48 cd02988 Phd_like_VIAF Phosduci 99.8 4.2E-19 9.2E-24 132.8 13.0 88 64-155 82-171 (192)
49 cd02992 PDI_a_QSOX PDIa family 99.8 4.4E-19 9.5E-24 122.4 11.9 85 65-149 2-91 (114)
50 cd02947 TRX_family TRX family; 99.8 1.3E-18 2.9E-23 113.5 12.4 92 73-166 2-93 (93)
51 KOG0190 Protein disulfide isom 99.8 1.9E-19 4.1E-24 149.3 9.7 106 62-168 23-131 (493)
52 TIGR00424 APS_reduc 5'-adenyly 99.8 1E-18 2.2E-23 145.3 13.4 107 62-168 349-462 (463)
53 TIGR01130 ER_PDI_fam protein d 99.8 1.2E-18 2.7E-23 145.2 13.9 105 65-170 2-110 (462)
54 PTZ00102 disulphide isomerase; 99.8 1.2E-18 2.6E-23 146.3 13.0 107 64-170 357-466 (477)
55 PLN02309 5'-adenylylsulfate re 99.8 2.2E-18 4.7E-23 143.3 13.8 106 63-168 344-456 (457)
56 PTZ00102 disulphide isomerase; 99.8 3.6E-18 7.8E-23 143.5 14.4 105 64-170 32-139 (477)
57 cd03007 PDI_a_ERp29_N PDIa fam 99.8 2.9E-18 6.4E-23 117.9 9.9 99 65-168 2-115 (116)
58 TIGR00411 redox_disulf_1 small 99.8 1E-17 2.2E-22 108.4 11.5 81 85-169 2-82 (82)
59 cd02982 PDI_b'_family Protein 99.8 8.2E-18 1.8E-22 113.4 10.2 88 82-169 12-103 (103)
60 cd02952 TRP14_like Human TRX-r 99.8 9.2E-18 2E-22 116.2 10.1 81 70-150 8-104 (119)
61 PTZ00062 glutaredoxin; Provisi 99.7 2.5E-17 5.4E-22 124.0 12.5 90 70-169 5-94 (204)
62 TIGR02187 GlrX_arch Glutaredox 99.7 7.1E-17 1.5E-21 123.0 10.5 98 70-169 9-111 (215)
63 cd02959 ERp19 Endoplasmic reti 99.7 3.5E-17 7.6E-22 113.4 7.6 96 73-168 10-112 (117)
64 TIGR01130 ER_PDI_fam protein d 99.7 1.7E-16 3.7E-21 132.4 11.7 104 64-169 346-454 (462)
65 KOG4277 Uncharacterized conser 99.7 6.6E-17 1.4E-21 125.7 7.0 87 81-168 42-131 (468)
66 KOG0912 Thiol-disulfide isomer 99.7 1.8E-16 3.8E-21 123.2 8.4 100 70-170 2-107 (375)
67 PRK15412 thiol:disulfide inter 99.7 1E-15 2.2E-20 114.0 12.0 88 80-170 66-177 (185)
68 TIGR02187 GlrX_arch Glutaredox 99.7 1.2E-15 2.6E-20 116.2 12.6 96 67-167 118-214 (215)
69 PRK14018 trifunctional thiored 99.7 5.9E-16 1.3E-20 130.4 11.4 88 80-167 54-171 (521)
70 KOG0190 Protein disulfide isom 99.7 1.5E-16 3.2E-21 132.2 7.7 101 65-167 367-471 (493)
71 PF13098 Thioredoxin_2: Thiore 99.7 2.7E-16 5.9E-21 107.5 7.5 86 80-165 3-112 (112)
72 TIGR02738 TrbB type-F conjugat 99.7 1.2E-15 2.6E-20 110.3 11.0 87 81-169 49-153 (153)
73 PRK00293 dipZ thiol:disulfide 99.7 9.2E-16 2E-20 131.7 12.2 99 70-169 459-570 (571)
74 TIGR00412 redox_disulf_2 small 99.7 1.2E-15 2.5E-20 97.9 9.2 73 86-165 2-75 (76)
75 PHA02125 thioredoxin-like prot 99.6 2.4E-15 5.2E-20 96.2 10.2 70 86-164 2-72 (75)
76 cd02955 SSP411 TRX domain, SSP 99.6 3.3E-15 7.1E-20 104.4 11.2 98 71-169 5-119 (124)
77 TIGR00385 dsbE periplasmic pro 99.6 3.6E-15 7.8E-20 109.9 11.7 89 80-171 61-173 (173)
78 KOG0191 Thioredoxin/protein di 99.6 1.9E-15 4.2E-20 124.2 9.7 106 65-170 30-135 (383)
79 cd03010 TlpA_like_DsbE TlpA-li 99.6 5.5E-15 1.2E-19 103.3 10.4 79 81-161 24-126 (127)
80 TIGR02740 TraF-like TraF-like 99.6 9.7E-15 2.1E-19 114.8 12.6 87 81-169 165-264 (271)
81 PRK11509 hydrogenase-1 operon 99.6 2.3E-14 5E-19 100.5 12.5 104 66-170 19-125 (132)
82 cd03008 TryX_like_RdCVF Trypar 99.6 1.3E-14 2.9E-19 103.9 10.1 71 81-151 24-128 (146)
83 PRK03147 thiol-disulfide oxido 99.6 3.5E-14 7.5E-19 104.1 12.5 89 81-169 60-172 (173)
84 PF13905 Thioredoxin_8: Thiore 99.6 2.1E-14 4.5E-19 95.4 9.7 67 82-148 1-95 (95)
85 PLN02919 haloacid dehalogenase 99.6 2.1E-14 4.5E-19 130.6 12.5 90 81-170 419-537 (1057)
86 cd02973 TRX_GRX_like Thioredox 99.6 3.5E-14 7.6E-19 88.5 9.0 62 85-149 2-63 (67)
87 cd02964 TryX_like_family Trypa 99.6 2.7E-14 5.8E-19 100.7 9.4 71 81-151 16-115 (132)
88 cd03009 TryX_like_TryX_NRX Try 99.6 3.4E-14 7.5E-19 99.8 9.5 71 81-151 17-115 (131)
89 PLN02399 phospholipid hydroper 99.5 1.6E-13 3.5E-18 105.6 13.4 90 81-170 98-235 (236)
90 KOG1731 FAD-dependent sulfhydr 99.5 4.5E-15 9.8E-20 123.7 5.0 111 59-169 34-153 (606)
91 cd02958 UAS UAS family; UAS is 99.5 2.7E-13 5.9E-18 93.3 12.4 98 73-170 8-112 (114)
92 PRK13728 conjugal transfer pro 99.5 1.9E-13 4.1E-18 100.9 11.9 83 86-170 73-172 (181)
93 cd03026 AhpF_NTD_C TRX-GRX-lik 99.5 1.3E-13 2.9E-18 90.9 9.8 75 82-161 12-86 (89)
94 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 3.2E-13 6.9E-18 93.6 10.2 82 81-164 19-121 (123)
95 KOG0191 Thioredoxin/protein di 99.5 1.3E-13 2.7E-18 113.5 9.4 106 65-170 145-253 (383)
96 PF08534 Redoxin: Redoxin; In 99.5 3.5E-13 7.6E-18 96.3 10.1 77 81-157 27-136 (146)
97 cd02966 TlpA_like_family TlpA- 99.5 3.8E-13 8.3E-18 90.8 9.7 74 81-154 18-116 (116)
98 cd03012 TlpA_like_DipZ_like Tl 99.5 5.8E-13 1.3E-17 93.1 10.0 75 81-155 22-125 (126)
99 cd02967 mauD Methylamine utili 99.5 5.1E-13 1.1E-17 91.4 9.1 70 81-150 20-110 (114)
100 PTZ00056 glutathione peroxidas 99.5 6.5E-13 1.4E-17 100.1 10.2 90 81-170 38-179 (199)
101 TIGR01626 ytfJ_HI0045 conserve 99.4 1.2E-12 2.5E-17 97.1 9.1 80 81-163 58-174 (184)
102 PLN02412 probable glutathione 99.4 3.2E-12 7E-17 93.7 10.6 91 81-171 28-166 (167)
103 TIGR02661 MauD methylamine deh 99.4 4.9E-12 1.1E-16 94.6 11.3 85 81-168 73-178 (189)
104 cd02960 AGR Anterior Gradient 99.4 4.5E-12 9.8E-17 88.8 8.4 83 72-156 13-100 (130)
105 COG0526 TrxA Thiol-disulfide i 99.3 6.4E-12 1.4E-16 84.3 8.3 88 82-169 32-124 (127)
106 TIGR02540 gpx7 putative glutat 99.3 1.3E-11 2.9E-16 89.1 9.9 89 81-169 21-153 (153)
107 COG4232 Thiol:disulfide interc 99.3 6.3E-12 1.4E-16 105.9 9.3 102 67-169 457-568 (569)
108 smart00594 UAS UAS domain. 99.3 3.6E-11 7.9E-16 83.8 11.7 96 70-165 15-121 (122)
109 cd02969 PRX_like1 Peroxiredoxi 99.3 3.4E-11 7.4E-16 88.4 12.0 90 81-170 24-153 (171)
110 cd00340 GSH_Peroxidase Glutath 99.3 2.9E-11 6.3E-16 87.2 8.3 83 81-164 21-151 (152)
111 PF13899 Thioredoxin_7: Thiore 99.2 2.1E-11 4.5E-16 79.1 6.4 69 75-144 10-81 (82)
112 cd03017 PRX_BCP Peroxiredoxin 99.2 2.4E-10 5.2E-15 80.8 9.8 85 81-165 22-139 (140)
113 PTZ00256 glutathione peroxidas 99.2 3.3E-10 7.1E-15 84.3 9.8 90 81-170 39-182 (183)
114 PF02114 Phosducin: Phosducin; 99.2 3.2E-10 6.9E-15 88.8 9.9 103 65-169 126-234 (265)
115 KOG0914 Thioredoxin-like prote 99.1 7E-11 1.5E-15 88.3 5.4 92 62-153 122-222 (265)
116 PF14595 Thioredoxin_9: Thiore 99.1 4.5E-10 9.8E-15 79.0 8.6 96 68-166 27-126 (129)
117 TIGR02196 GlrX_YruB Glutaredox 99.1 1.3E-09 2.8E-14 68.2 9.1 68 86-165 2-73 (74)
118 COG2143 Thioredoxin-related pr 99.1 2E-09 4.4E-14 76.7 10.8 92 76-167 36-147 (182)
119 KOG2501 Thioredoxin, nucleored 99.1 3.1E-10 6.7E-15 81.3 6.5 70 81-150 32-130 (157)
120 cd03015 PRX_Typ2cys Peroxiredo 99.1 2.5E-09 5.4E-14 78.7 11.1 88 81-168 28-156 (173)
121 PF13728 TraF: F plasmid trans 99.1 2.5E-09 5.4E-14 81.5 11.3 82 82-165 120-214 (215)
122 PF13192 Thioredoxin_3: Thiore 99.1 3.3E-09 7.2E-14 67.7 9.7 73 87-166 3-76 (76)
123 PF00578 AhpC-TSA: AhpC/TSA fa 99.0 1.9E-09 4.1E-14 74.4 9.2 70 81-150 24-123 (124)
124 PRK09437 bcp thioredoxin-depen 99.0 3.8E-09 8.3E-14 76.1 11.1 87 81-167 29-151 (154)
125 PRK00522 tpx lipid hydroperoxi 99.0 2.3E-09 5.1E-14 78.6 10.0 73 81-154 43-149 (167)
126 TIGR02200 GlrX_actino Glutared 99.0 2.3E-09 5E-14 68.0 8.2 70 86-166 2-76 (77)
127 cd01659 TRX_superfamily Thiore 99.0 2.1E-09 4.6E-14 64.2 7.6 60 86-146 1-63 (69)
128 cd03014 PRX_Atyp2cys Peroxired 99.0 3.7E-09 8.1E-14 75.1 9.6 74 81-155 25-129 (143)
129 KOG1672 ATP binding protein [P 99.0 1.9E-09 4E-14 79.4 7.8 89 66-156 68-157 (211)
130 TIGR03137 AhpC peroxiredoxin. 99.0 7.5E-09 1.6E-13 77.2 11.3 86 81-166 30-153 (187)
131 cd02970 PRX_like2 Peroxiredoxi 99.0 9.8E-09 2.1E-13 73.0 10.7 73 82-154 24-148 (149)
132 PRK10606 btuE putative glutath 99.0 3.9E-09 8.5E-14 78.5 8.8 90 81-171 24-183 (183)
133 KOG0913 Thiol-disulfide isomer 99.0 1.7E-10 3.7E-15 87.1 1.0 99 65-167 25-124 (248)
134 PF03190 Thioredox_DsbH: Prote 99.0 5.4E-09 1.2E-13 75.9 8.7 84 67-151 23-118 (163)
135 cd03018 PRX_AhpE_like Peroxire 98.9 1.4E-08 3E-13 72.5 10.6 74 83-156 29-134 (149)
136 PF06110 DUF953: Eukaryotic pr 98.9 9.6E-09 2.1E-13 71.0 8.8 77 72-148 6-101 (119)
137 TIGR02180 GRX_euk Glutaredoxin 98.9 5.1E-09 1.1E-13 67.5 7.0 60 86-149 1-65 (84)
138 TIGR02739 TraF type-F conjugat 98.9 3.3E-08 7.1E-13 77.0 12.6 86 82-169 150-248 (256)
139 cd02991 UAS_ETEA UAS family, E 98.9 4E-08 8.6E-13 67.9 11.6 94 74-170 9-114 (116)
140 PRK10877 protein disulfide iso 98.9 1.7E-08 3.6E-13 77.9 10.0 81 81-168 106-230 (232)
141 cd02971 PRX_family Peroxiredox 98.9 2.1E-08 4.7E-13 70.6 9.6 77 81-157 21-131 (140)
142 KOG3414 Component of the U4/U6 98.9 9.4E-08 2E-12 65.7 12.1 99 70-168 10-119 (142)
143 PRK13190 putative peroxiredoxi 98.9 3.6E-08 7.7E-13 74.5 11.2 89 81-169 26-154 (202)
144 PRK10382 alkyl hydroperoxide r 98.9 6.5E-08 1.4E-12 72.2 11.8 88 81-168 30-155 (187)
145 PRK13703 conjugal pilus assemb 98.9 5.3E-08 1.1E-12 75.4 11.6 86 82-169 143-241 (248)
146 PRK11200 grxA glutaredoxin 1; 98.8 6.1E-08 1.3E-12 63.1 9.5 76 85-169 2-83 (85)
147 cd02968 SCO SCO (an acronym fo 98.8 2.6E-08 5.6E-13 70.5 7.9 43 81-123 21-68 (142)
148 PF02966 DIM1: Mitosis protein 98.8 5.5E-07 1.2E-11 62.6 13.7 98 70-168 7-116 (133)
149 PRK15000 peroxidase; Provision 98.8 7.9E-08 1.7E-12 72.5 9.5 87 81-167 33-160 (200)
150 PF13848 Thioredoxin_6: Thiore 98.8 2.8E-07 6E-12 67.8 12.3 102 65-167 78-184 (184)
151 TIGR03143 AhpF_homolog putativ 98.7 1.5E-07 3.3E-12 81.0 11.8 93 67-165 461-554 (555)
152 cd03020 DsbA_DsbC_DsbG DsbA fa 98.7 7.4E-08 1.6E-12 72.3 8.1 76 82-165 77-197 (197)
153 KOG3425 Uncharacterized conser 98.7 1E-07 2.2E-12 65.0 7.8 75 71-145 12-104 (128)
154 PRK11657 dsbG disulfide isomer 98.7 1.5E-07 3.3E-12 73.4 9.4 82 82-166 117-249 (251)
155 cd03023 DsbA_Com1_like DsbA fa 98.7 1.7E-07 3.7E-12 66.7 8.9 80 81-166 4-154 (154)
156 KOG0911 Glutaredoxin-related p 98.7 2E-08 4.3E-13 75.6 3.8 82 80-162 15-96 (227)
157 PF07449 HyaE: Hydrogenase-1 e 98.7 1.6E-07 3.5E-12 63.6 7.7 97 64-161 9-107 (107)
158 PTZ00137 2-Cys peroxiredoxin; 98.6 5.6E-07 1.2E-11 70.4 11.6 88 81-168 97-224 (261)
159 cd02976 NrdH NrdH-redoxin (Nrd 98.6 3.4E-07 7.3E-12 56.9 8.5 67 86-164 2-72 (73)
160 PRK13189 peroxiredoxin; Provis 98.6 6.2E-07 1.3E-11 68.7 11.1 88 81-168 34-162 (222)
161 PRK15317 alkyl hydroperoxide r 98.6 6.1E-07 1.3E-11 76.7 11.7 98 64-167 98-196 (517)
162 PRK13599 putative peroxiredoxi 98.6 8.6E-07 1.9E-11 67.6 11.0 88 81-168 27-155 (215)
163 cd03016 PRX_1cys Peroxiredoxin 98.6 8.9E-07 1.9E-11 66.9 10.5 86 83-168 26-153 (203)
164 TIGR02183 GRXA Glutaredoxin, G 98.6 7.1E-07 1.5E-11 58.3 8.7 74 86-168 2-81 (86)
165 PF01216 Calsequestrin: Calseq 98.6 1.6E-06 3.4E-11 69.4 11.8 114 55-170 25-145 (383)
166 PRK13191 putative peroxiredoxi 98.6 1.4E-06 3.1E-11 66.4 11.4 88 81-168 32-160 (215)
167 cd02983 P5_C P5 family, C-term 98.5 4.1E-06 8.8E-11 59.0 12.3 106 65-170 3-116 (130)
168 PF13462 Thioredoxin_4: Thiore 98.5 1.1E-06 2.5E-11 63.2 9.7 81 82-167 12-162 (162)
169 cd03019 DsbA_DsbA DsbA family, 98.5 6.6E-07 1.4E-11 65.5 8.4 41 81-121 14-54 (178)
170 PF11009 DUF2847: Protein of u 98.5 3.2E-06 7E-11 57.0 10.1 92 70-161 6-104 (105)
171 PRK10954 periplasmic protein d 98.5 9.4E-07 2E-11 66.9 8.2 41 82-122 37-80 (207)
172 PTZ00253 tryparedoxin peroxida 98.5 1.7E-06 3.6E-11 65.2 9.4 74 81-154 35-145 (199)
173 cd03072 PDI_b'_ERp44 PDIb' fam 98.5 2.6E-06 5.6E-11 58.4 9.4 102 66-170 1-109 (111)
174 TIGR03140 AhpF alkyl hydropero 98.4 3.6E-06 7.8E-11 72.0 11.7 98 65-168 100-198 (515)
175 PHA03050 glutaredoxin; Provisi 98.4 1.8E-06 3.8E-11 58.9 7.8 70 73-149 4-80 (108)
176 TIGR02190 GlrX-dom Glutaredoxi 98.4 4.2E-06 9.2E-11 53.6 8.8 60 82-149 6-68 (79)
177 cd03419 GRX_GRXh_1_2_like Glut 98.4 1.9E-06 4E-11 55.2 6.9 58 86-149 2-64 (82)
178 PF00462 Glutaredoxin: Glutare 98.3 4.1E-06 8.8E-11 50.7 7.3 56 86-149 1-60 (60)
179 cd02066 GRX_family Glutaredoxi 98.3 5E-06 1.1E-10 51.2 7.2 57 86-150 2-62 (72)
180 TIGR02194 GlrX_NrdH Glutaredox 98.2 1E-05 2.2E-10 50.8 7.8 67 86-163 1-70 (72)
181 PF05768 DUF836: Glutaredoxin- 98.2 1.5E-05 3.2E-10 51.4 8.7 76 86-166 2-81 (81)
182 cd02981 PDI_b_family Protein D 98.2 2.3E-05 5E-10 51.7 9.7 93 68-167 3-96 (97)
183 cd03029 GRX_hybridPRX5 Glutare 98.2 3E-05 6.5E-10 48.6 8.9 66 86-165 3-71 (72)
184 cd03073 PDI_b'_ERp72_ERp57 PDI 98.2 2.1E-05 4.5E-10 53.9 8.7 98 68-169 3-111 (111)
185 KOG2603 Oligosaccharyltransfer 98.2 1.8E-05 4E-10 62.5 9.4 105 63-168 39-165 (331)
186 cd03418 GRX_GRXb_1_3_like Glut 98.1 2.2E-05 4.9E-10 49.3 7.9 56 86-149 2-62 (75)
187 TIGR02189 GlrX-like_plant Glut 98.1 1.3E-05 2.9E-10 53.7 6.8 56 86-149 10-72 (99)
188 cd03027 GRX_DEP Glutaredoxin ( 98.1 3.1E-05 6.8E-10 48.6 8.0 56 86-149 3-62 (73)
189 TIGR02181 GRX_bact Glutaredoxi 98.1 1.4E-05 3E-10 50.9 6.3 56 86-149 1-60 (79)
190 TIGR03143 AhpF_homolog putativ 98.1 6.4E-05 1.4E-09 64.9 12.1 96 74-170 357-455 (555)
191 PRK10329 glutaredoxin-like pro 98.1 0.00011 2.4E-09 47.4 10.3 70 86-167 3-75 (81)
192 COG1225 Bcp Peroxiredoxin [Pos 98.0 8.6E-05 1.9E-09 53.7 9.8 88 81-168 29-155 (157)
193 cd02972 DsbA_family DsbA famil 98.0 3.3E-05 7.1E-10 50.2 6.7 58 86-143 1-90 (98)
194 TIGR00365 monothiol glutaredox 97.9 0.00015 3.3E-09 48.3 9.0 59 83-149 12-78 (97)
195 COG0695 GrxC Glutaredoxin and 97.9 0.00014 3.1E-09 46.8 8.3 54 86-147 3-62 (80)
196 cd03028 GRX_PICOT_like Glutare 97.9 0.00011 2.4E-09 48.3 7.4 60 82-149 7-74 (90)
197 KOG3170 Conserved phosducin-li 97.8 0.00012 2.7E-09 54.5 8.2 99 64-166 91-198 (240)
198 PRK10824 glutaredoxin-4; Provi 97.8 0.00016 3.4E-09 49.8 7.9 60 83-150 15-82 (115)
199 KOG1752 Glutaredoxin and relat 97.8 0.00044 9.6E-09 46.7 9.1 58 86-149 16-78 (104)
200 PRK10638 glutaredoxin 3; Provi 97.8 0.00023 5E-09 45.9 7.5 56 86-149 4-63 (83)
201 KOG3171 Conserved phosducin-li 97.7 0.0001 2.2E-09 55.5 5.5 86 65-152 139-227 (273)
202 PF13743 Thioredoxin_5: Thiore 97.7 0.00014 3E-09 53.8 6.1 35 88-122 2-36 (176)
203 cd03013 PRX5_like Peroxiredoxi 97.6 0.00053 1.1E-08 49.6 8.6 75 82-156 29-141 (155)
204 cd03067 PDI_b_PDIR_N PDIb fami 97.5 0.0013 2.9E-08 43.8 8.5 96 70-167 8-110 (112)
205 PF07912 ERp29_N: ERp29, N-ter 97.5 0.0089 1.9E-07 41.3 12.2 101 65-168 5-118 (126)
206 PTZ00062 glutaredoxin; Provisi 97.4 0.0013 2.9E-08 49.7 8.4 59 83-149 113-179 (204)
207 COG1651 DsbG Protein-disulfide 97.4 0.0014 3.1E-08 50.5 8.6 38 127-169 206-243 (244)
208 PRK12759 bifunctional gluaredo 97.2 0.0015 3.3E-08 54.5 7.7 56 86-149 4-71 (410)
209 COG1331 Highly conserved prote 97.2 0.0018 3.8E-08 56.5 8.1 85 65-150 27-123 (667)
210 PF01323 DSBA: DSBA-like thior 97.2 0.004 8.6E-08 45.9 9.0 36 127-166 158-193 (193)
211 PF13848 Thioredoxin_6: Thiore 97.1 0.0057 1.2E-07 44.6 9.2 65 100-168 8-74 (184)
212 PF00837 T4_deiodinase: Iodoth 96.8 0.013 2.9E-07 45.1 8.7 44 79-122 99-142 (237)
213 cd03066 PDI_b_Calsequestrin_mi 96.8 0.054 1.2E-06 36.1 10.8 95 67-168 3-100 (102)
214 COG0386 BtuE Glutathione perox 96.6 0.034 7.4E-07 40.0 9.3 91 80-171 23-162 (162)
215 cd03031 GRX_GRX_like Glutaredo 96.5 0.021 4.5E-07 41.0 7.6 56 86-149 2-71 (147)
216 cd03069 PDI_b_ERp57 PDIb famil 96.4 0.098 2.1E-06 35.0 10.1 90 70-168 7-103 (104)
217 cd02974 AhpF_NTD_N Alkyl hydro 96.4 0.15 3.3E-06 33.7 10.8 80 76-168 12-93 (94)
218 COG3019 Predicted metal-bindin 96.3 0.058 1.3E-06 38.1 8.9 73 84-167 26-102 (149)
219 COG1999 Uncharacterized protei 96.3 0.11 2.4E-06 39.4 11.2 91 81-171 66-206 (207)
220 cd02978 KaiB_like KaiB-like fa 96.1 0.035 7.6E-07 34.9 6.3 59 85-143 3-62 (72)
221 KOG2640 Thioredoxin [Function 96.0 0.0016 3.4E-08 51.7 -0.1 87 82-170 76-163 (319)
222 PRK15317 alkyl hydroperoxide r 96.0 0.13 2.8E-06 44.2 11.4 86 73-170 9-95 (517)
223 TIGR03140 AhpF alkyl hydropero 95.9 0.17 3.6E-06 43.5 11.4 85 74-169 10-95 (515)
224 KOG2792 Putative cytochrome C 95.6 0.074 1.6E-06 41.5 7.2 98 67-170 130-276 (280)
225 cd03074 PDI_b'_Calsequestrin_C 95.5 0.46 9.9E-06 32.2 10.8 102 68-169 5-120 (120)
226 KOG2507 Ubiquitin regulatory p 95.4 0.24 5.2E-06 41.3 9.9 90 80-169 16-111 (506)
227 PF09822 ABC_transp_aux: ABC-t 95.3 1 2.2E-05 35.3 13.1 71 65-136 8-88 (271)
228 TIGR02654 circ_KaiB circadian 95.0 0.19 4.1E-06 32.8 6.8 75 83-158 3-78 (87)
229 PRK09301 circadian clock prote 95.0 0.18 3.9E-06 33.8 6.8 76 82-158 5-81 (103)
230 cd03060 GST_N_Omega_like GST_N 95.0 0.13 2.8E-06 31.6 5.9 58 87-149 2-60 (71)
231 TIGR02742 TrbC_Ftype type-F co 94.9 0.12 2.7E-06 36.3 6.2 45 121-165 56-111 (130)
232 cd02990 UAS_FAF1 UAS family, F 94.7 1 2.2E-05 31.9 12.7 92 79-170 18-134 (136)
233 cd03040 GST_N_mPGES2 GST_N fam 94.4 0.23 5E-06 30.9 6.1 73 86-169 2-76 (77)
234 COG2761 FrnE Predicted dithiol 94.2 0.13 2.8E-06 39.4 5.4 41 126-170 174-214 (225)
235 PF09673 TrbC_Ftype: Type-F co 94.1 0.24 5.1E-06 33.9 6.1 43 98-145 38-80 (113)
236 cd00570 GST_N_family Glutathio 94.0 0.21 4.5E-06 29.5 5.2 56 88-149 3-60 (71)
237 COG4545 Glutaredoxin-related p 93.9 0.18 3.9E-06 31.8 4.7 56 87-149 5-76 (85)
238 COG3634 AhpF Alkyl hydroperoxi 93.7 0.39 8.5E-06 39.5 7.4 95 67-166 101-195 (520)
239 PHA03075 glutaredoxin-like pro 93.6 0.14 3.1E-06 35.0 4.2 30 83-112 2-31 (123)
240 KOG1651 Glutathione peroxidase 93.6 0.59 1.3E-05 34.1 7.6 92 80-171 32-171 (171)
241 cd03041 GST_N_2GST_N GST_N fam 93.5 0.23 5E-06 31.1 4.9 69 87-167 3-75 (77)
242 cd02977 ArsC_family Arsenate R 92.6 0.17 3.7E-06 33.8 3.4 33 87-125 2-34 (105)
243 PF02630 SCO1-SenC: SCO1/SenC; 92.6 0.45 9.7E-06 34.9 5.9 43 81-123 51-97 (174)
244 PF13417 GST_N_3: Glutathione 92.5 1.6 3.4E-05 27.0 8.7 68 89-168 2-70 (75)
245 PF07689 KaiB: KaiB domain; I 92.4 0.074 1.6E-06 34.3 1.4 53 89-141 3-56 (82)
246 cd03037 GST_N_GRX2 GST_N famil 92.4 0.42 9.1E-06 29.2 4.8 55 88-147 3-57 (71)
247 cd03051 GST_N_GTT2_like GST_N 92.0 0.28 6.1E-06 29.9 3.7 56 87-147 2-61 (74)
248 PF04592 SelP_N: Selenoprotein 91.7 1.6 3.4E-05 33.8 8.0 46 78-123 22-71 (238)
249 cd03045 GST_N_Delta_Epsilon GS 91.5 0.87 1.9E-05 27.8 5.6 55 87-147 2-60 (74)
250 TIGR01617 arsC_related transcr 91.4 0.47 1E-05 32.4 4.6 34 87-126 2-35 (117)
251 cd03024 DsbA_FrnE DsbA family, 91.4 0.21 4.6E-06 37.0 3.1 38 125-166 164-201 (201)
252 PF06053 DUF929: Domain of unk 90.9 1.1 2.4E-05 35.0 6.6 58 78-143 54-112 (249)
253 cd03068 PDI_b_ERp72 PDIb famil 90.8 3.6 7.7E-05 27.6 10.3 91 70-167 7-106 (107)
254 cd03059 GST_N_SspA GST_N famil 90.6 0.95 2.1E-05 27.5 5.1 69 87-167 2-71 (73)
255 PRK01655 spxA transcriptional 90.1 0.64 1.4E-05 32.5 4.4 34 86-125 2-35 (131)
256 cd03036 ArsC_like Arsenate Red 90.0 0.54 1.2E-05 31.8 3.9 33 87-125 2-34 (111)
257 COG0450 AhpC Peroxiredoxin [Po 89.9 3 6.4E-05 31.3 7.9 87 82-168 33-160 (194)
258 PF13778 DUF4174: Domain of un 89.7 4.9 0.00011 27.5 8.9 87 82-168 10-111 (118)
259 cd03035 ArsC_Yffb Arsenate Red 89.6 0.57 1.2E-05 31.5 3.7 41 87-133 2-49 (105)
260 PF04134 DUF393: Protein of un 89.5 0.63 1.4E-05 31.3 3.9 57 89-147 2-61 (114)
261 cd03022 DsbA_HCCA_Iso DsbA fam 89.2 0.45 9.8E-06 34.8 3.2 35 126-165 157-191 (192)
262 COG3531 Predicted protein-disu 89.1 0.84 1.8E-05 34.3 4.5 45 126-170 164-210 (212)
263 cd03055 GST_N_Omega GST_N fami 89.1 2 4.3E-05 27.6 5.9 53 86-142 19-72 (89)
264 PF06953 ArsD: Arsenical resis 88.6 3.6 7.8E-05 28.6 7.2 50 114-166 40-99 (123)
265 cd03025 DsbA_FrnE_like DsbA fa 87.3 0.99 2.1E-05 33.1 4.0 31 86-116 3-33 (193)
266 cd03056 GST_N_4 GST_N family, 86.4 1.4 3.1E-05 26.6 3.8 56 88-149 3-62 (73)
267 cd03032 ArsC_Spx Arsenate Redu 86.2 1.8 3.9E-05 29.4 4.5 34 86-125 2-35 (115)
268 PRK12559 transcriptional regul 85.7 1.4 3.1E-05 30.8 3.9 34 86-125 2-35 (131)
269 PRK13730 conjugal transfer pil 84.8 2.2 4.7E-05 32.3 4.6 37 125-162 151-187 (212)
270 cd03052 GST_N_GDAP1 GST_N fami 83.5 5.3 0.00012 24.6 5.5 56 87-148 2-61 (73)
271 KOG0855 Alkyl hydroperoxide re 83.4 8.4 0.00018 28.4 7.0 86 81-169 89-209 (211)
272 PF06764 DUF1223: Protein of u 83.2 17 0.00037 27.5 9.0 78 85-169 1-98 (202)
273 PF00255 GSHPx: Glutathione pe 82.9 6.3 0.00014 26.7 6.0 43 81-124 20-63 (108)
274 COG0278 Glutaredoxin-related p 80.4 7.8 0.00017 26.0 5.5 54 92-150 28-83 (105)
275 KOG1364 Predicted ubiquitin re 80.3 2.7 5.8E-05 34.3 3.9 57 114-170 132-190 (356)
276 PRK13344 spxA transcriptional 78.8 4.7 0.0001 28.2 4.4 34 86-125 2-35 (132)
277 cd03025 DsbA_FrnE_like DsbA fa 78.1 2.2 4.8E-05 31.2 2.7 22 126-147 159-180 (193)
278 PF09695 YtfJ_HI0045: Bacteria 77.9 24 0.00052 25.7 9.0 42 127-168 114-157 (160)
279 KOG4277 Uncharacterized conser 77.2 31 0.00067 28.0 8.9 98 60-167 130-229 (468)
280 COG5309 Exo-beta-1,3-glucanase 75.2 13 0.00029 29.5 6.3 82 82-168 74-161 (305)
281 PF00352 TBP: Transcription fa 74.6 8.3 0.00018 24.7 4.4 75 86-170 6-80 (86)
282 PF05988 DUF899: Bacterial pro 73.7 25 0.00055 26.8 7.3 80 74-153 60-173 (211)
283 COG3011 Predicted thiol-disulf 73.4 24 0.00052 25.0 6.7 67 81-149 5-73 (137)
284 KOG0852 Alkyl hydroperoxide re 73.1 31 0.00068 25.6 7.4 70 81-150 32-138 (196)
285 cd03053 GST_N_Phi GST_N family 72.6 11 0.00023 22.9 4.5 57 86-148 2-62 (76)
286 PF01216 Calsequestrin: Calseq 72.2 55 0.0012 27.1 9.9 104 67-170 252-369 (383)
287 cd03021 DsbA_GSTK DsbA family, 68.9 5.6 0.00012 29.8 3.0 39 127-165 170-208 (209)
288 PRK09481 sspA stringent starva 67.0 16 0.00035 27.1 5.2 63 81-149 6-69 (211)
289 KOG1422 Intracellular Cl- chan 66.9 55 0.0012 25.0 8.3 66 93-170 20-86 (221)
290 PRK00366 ispG 4-hydroxy-3-meth 66.7 23 0.00049 29.2 6.2 76 94-169 274-357 (360)
291 PF06491 Disulph_isomer: Disul 65.9 44 0.00095 23.5 12.1 99 70-169 23-132 (136)
292 cd03033 ArsC_15kD Arsenate Red 63.0 12 0.00026 25.5 3.4 32 86-123 2-33 (113)
293 COG0821 gcpE 1-hydroxy-2-methy 61.0 33 0.00072 28.1 6.0 77 94-170 264-352 (361)
294 COG5494 Predicted thioredoxin/ 59.6 69 0.0015 24.6 7.1 70 88-166 15-85 (265)
295 TIGR02743 TraW type-F conjugat 59.1 34 0.00073 25.9 5.6 41 104-150 158-198 (202)
296 PF07511 DUF1525: Protein of u 58.7 30 0.00065 23.7 4.7 36 128-167 75-110 (114)
297 KOG2244 Highly conserved prote 58.5 9.1 0.0002 33.4 2.6 76 67-143 98-184 (786)
298 cd03061 GST_N_CLIC GST_N famil 57.9 50 0.0011 21.5 8.4 65 92-168 20-85 (91)
299 PF07700 HNOB: Heme NO binding 57.2 37 0.00081 24.6 5.5 42 82-123 127-169 (171)
300 cd03049 GST_N_3 GST_N family, 55.1 41 0.00088 20.1 4.7 58 88-148 3-61 (73)
301 cd03022 DsbA_HCCA_Iso DsbA fam 55.0 30 0.00065 25.0 4.7 33 88-120 3-35 (192)
302 cd03058 GST_N_Tau GST_N family 55.0 44 0.00096 20.0 5.1 68 88-167 3-72 (74)
303 TIGR03521 GldG gliding-associa 54.5 1.5E+02 0.0032 26.0 10.5 74 63-138 29-116 (552)
304 PRK10387 glutaredoxin 2; Provi 54.3 64 0.0014 23.6 6.5 55 89-148 4-58 (210)
305 cd03038 GST_N_etherase_LigE GS 53.4 47 0.001 20.6 4.9 67 91-168 13-82 (84)
306 TIGR02182 GRXB Glutaredoxin, G 53.1 66 0.0014 23.9 6.4 55 89-148 3-57 (209)
307 COG2077 Tpx Peroxiredoxin [Pos 52.9 42 0.00091 24.3 4.9 41 82-123 45-85 (158)
308 PF11072 DUF2859: Protein of u 52.1 17 0.00037 25.9 2.8 36 103-142 102-137 (142)
309 PF08806 Sep15_SelM: Sep15/Sel 51.5 24 0.00052 22.4 3.2 34 136-169 41-76 (78)
310 TIGR03765 ICE_PFL_4695 integra 50.9 17 0.00037 24.5 2.5 37 102-142 63-99 (105)
311 PF11287 DUF3088: Protein of u 49.5 31 0.00068 23.5 3.6 49 94-143 24-75 (112)
312 PRK13738 conjugal transfer pil 49.4 61 0.0013 24.7 5.6 41 105-150 157-198 (209)
313 PRK00394 transcription factor; 49.1 46 0.001 24.6 4.8 31 138-170 47-77 (179)
314 cd03030 GRX_SH3BGR Glutaredoxi 48.8 73 0.0016 20.7 6.7 34 114-149 30-71 (92)
315 COG1393 ArsC Arsenate reductas 47.8 28 0.00061 23.8 3.3 22 86-107 3-24 (117)
316 COG3411 Ferredoxin [Energy pro 47.7 57 0.0012 19.9 4.2 31 136-170 16-46 (64)
317 TIGR03759 conj_TIGR03759 integ 45.8 61 0.0013 24.5 5.0 36 83-122 109-144 (200)
318 cd03039 GST_N_Sigma_like GST_N 45.3 41 0.00089 20.0 3.6 54 89-148 4-59 (72)
319 PF04551 GcpE: GcpE protein; 45.2 27 0.00058 28.8 3.3 75 94-168 271-358 (359)
320 COG2101 SPT15 TATA-box binding 45.2 43 0.00094 24.8 4.0 31 138-170 54-84 (185)
321 cd03034 ArsC_ArsC Arsenate Red 44.8 28 0.0006 23.4 2.9 32 87-124 2-33 (112)
322 TIGR00014 arsC arsenate reduct 44.3 28 0.00061 23.5 2.9 33 87-125 2-34 (114)
323 COG3531 Predicted protein-disu 43.2 28 0.00061 26.4 2.9 29 84-112 2-30 (212)
324 cd03050 GST_N_Theta GST_N fami 43.0 74 0.0016 19.1 6.0 55 88-148 3-61 (76)
325 cd03054 GST_N_Metaxin GST_N fa 42.4 74 0.0016 18.9 7.5 58 92-167 14-71 (72)
326 cd04516 TBP_eukaryotes eukaryo 41.9 63 0.0014 23.8 4.6 29 139-169 49-77 (174)
327 cd00652 TBP_TLF TATA box bindi 41.3 64 0.0014 23.7 4.6 30 139-170 141-170 (174)
328 PRK00394 transcription factor; 41.3 65 0.0014 23.8 4.6 31 138-170 140-170 (179)
329 cd04518 TBP_archaea archaeal T 40.3 69 0.0015 23.6 4.6 29 139-169 140-168 (174)
330 KOG3029 Glutathione S-transfer 40.2 97 0.0021 25.0 5.5 73 84-169 89-161 (370)
331 cd03044 GST_N_EF1Bgamma GST_N 40.0 84 0.0018 18.9 4.9 56 88-148 3-61 (75)
332 cd00652 TBP_TLF TATA box bindi 39.9 70 0.0015 23.5 4.6 31 138-170 48-78 (174)
333 cd04517 TLF TBP-like factors ( 39.8 72 0.0016 23.4 4.6 31 138-170 48-78 (174)
334 COG5429 Uncharacterized secret 39.7 31 0.00067 26.9 2.7 81 83-168 42-140 (261)
335 PF07315 DUF1462: Protein of u 39.6 1.1E+02 0.0024 20.1 7.6 70 93-166 8-93 (93)
336 TIGR00612 ispG_gcpE 1-hydroxy- 39.4 51 0.0011 27.1 4.0 74 91-168 262-344 (346)
337 TIGR03757 conj_TIGR03757 integ 39.4 82 0.0018 21.6 4.5 29 128-160 76-104 (113)
338 PLN00062 TATA-box-binding prot 39.3 71 0.0015 23.6 4.5 30 139-170 140-169 (179)
339 PLN00062 TATA-box-binding prot 39.2 71 0.0015 23.6 4.5 31 138-170 48-78 (179)
340 PF02702 KdpD: Osmosensitive K 38.3 1.8E+02 0.0039 22.2 7.7 70 81-151 3-73 (211)
341 cd04517 TLF TBP-like factors ( 37.7 78 0.0017 23.3 4.5 30 139-170 141-170 (174)
342 cd04516 TBP_eukaryotes eukaryo 37.6 79 0.0017 23.3 4.5 30 139-170 140-169 (174)
343 cd04518 TBP_archaea archaeal T 37.2 81 0.0018 23.2 4.5 31 138-170 48-78 (174)
344 PF03227 GILT: Gamma interfero 37.1 1.1E+02 0.0023 20.4 4.8 32 86-117 3-37 (108)
345 cd03024 DsbA_FrnE DsbA family, 36.9 75 0.0016 23.1 4.4 25 88-112 3-27 (201)
346 PRK10853 putative reductase; P 36.5 49 0.0011 22.6 3.1 32 86-123 2-33 (118)
347 COG1775 HgdB Benzoyl-CoA reduc 36.0 98 0.0021 25.8 5.2 71 93-170 299-376 (379)
348 PF03960 ArsC: ArsC family; I 34.5 1.1E+02 0.0023 20.3 4.5 31 89-125 1-31 (110)
349 KOG0912 Thiol-disulfide isomer 34.4 1.9E+02 0.0041 23.7 6.4 74 65-142 211-290 (375)
350 TIGR01616 nitro_assoc nitrogen 34.2 69 0.0015 22.2 3.6 22 86-107 3-24 (126)
351 PRK15113 glutathione S-transfe 33.9 1.9E+02 0.0042 21.3 6.6 60 84-149 4-69 (214)
352 PRK11752 putative S-transferas 33.5 1.9E+02 0.0041 22.4 6.4 56 87-142 45-106 (264)
353 PF00708 Acylphosphatase: Acyl 33.5 1.2E+02 0.0026 19.3 4.5 40 126-169 24-63 (91)
354 KOG0868 Glutathione S-transfer 32.6 22 0.00047 26.6 0.9 67 81-150 3-69 (217)
355 PRK10026 arsenate reductase; P 32.3 69 0.0015 22.7 3.4 22 86-107 4-25 (141)
356 COG2999 GrxB Glutaredoxin 2 [P 32.2 57 0.0012 24.4 3.0 52 91-147 6-57 (215)
357 cd03076 GST_N_Pi GST_N family, 31.8 1.2E+02 0.0026 18.2 4.3 55 88-148 4-59 (73)
358 KOG4079 Putative mitochondrial 31.7 69 0.0015 22.8 3.2 33 137-169 74-107 (169)
359 PF00403 HMA: Heavy-metal-asso 31.4 1.1E+02 0.0023 17.6 5.6 35 87-125 2-36 (62)
360 PRK14531 adenylate kinase; Pro 31.1 93 0.002 22.5 4.1 84 82-169 79-182 (183)
361 cd03048 GST_N_Ure2p_like GST_N 30.9 69 0.0015 19.5 3.0 70 88-168 3-78 (81)
362 COG2761 FrnE Predicted dithiol 30.7 82 0.0018 24.3 3.8 32 84-115 5-37 (225)
363 PF02484 Rhabdo_NV: Rhabdoviru 30.4 59 0.0013 21.3 2.5 38 131-168 18-55 (111)
364 PF02401 LYTB: LytB protein; 29.6 2.7E+02 0.0059 22.2 6.7 83 81-170 180-279 (281)
365 TIGR00597 rad10 DNA repair pro 29.4 88 0.0019 21.4 3.4 39 93-131 48-86 (112)
366 PF05679 CHGN: Chondroitin N-a 29.3 3.8E+02 0.0082 23.2 8.4 71 73-143 269-347 (499)
367 PF14424 Toxin-deaminase: The 29.1 1.3E+02 0.0028 21.1 4.3 26 91-120 105-130 (133)
368 TIGR00862 O-ClC intracellular 29.0 2.7E+02 0.0059 21.4 6.7 51 92-148 17-68 (236)
369 PF04214 DUF411: Protein of un 29.0 1.5E+02 0.0032 18.5 5.8 45 118-167 3-51 (70)
370 PF13409 GST_N_2: Glutathione 28.8 1.3E+02 0.0029 17.8 5.0 65 93-167 1-69 (70)
371 PF11238 DUF3039: Protein of u 28.5 1.2E+02 0.0026 18.1 3.4 24 81-104 23-57 (58)
372 COG1651 DsbG Protein-disulfide 28.0 51 0.0011 25.0 2.3 25 83-107 85-109 (244)
373 cd03021 DsbA_GSTK DsbA family, 27.5 1.9E+02 0.0042 21.4 5.4 37 86-122 3-39 (209)
374 PF11317 DUF3119: Protein of u 27.4 1.3E+02 0.0028 20.7 3.9 33 136-168 82-114 (116)
375 PF10865 DUF2703: Domain of un 27.0 1.3E+02 0.0028 20.8 3.9 53 92-149 13-72 (120)
376 PF14307 Glyco_tran_WbsX: Glyc 26.5 1.6E+02 0.0036 23.9 5.1 42 81-122 157-199 (345)
377 PF14639 YqgF: Holliday-juncti 26.2 1.2E+02 0.0027 21.6 3.9 43 79-122 59-106 (150)
378 PF10405 BHD_3: Rad4 beta-hair 26.1 1.3E+02 0.0029 18.8 3.6 48 118-165 22-72 (76)
379 TIGR01287 nifH nitrogenase iro 25.8 53 0.0012 25.5 2.1 52 80-134 219-270 (275)
380 TIGR00762 DegV EDD domain prot 25.8 1.5E+02 0.0033 23.2 4.7 27 122-149 9-35 (275)
381 KOG0911 Glutaredoxin-related p 25.6 1.1E+02 0.0024 23.6 3.6 62 82-149 138-205 (227)
382 COG4752 Uncharacterized protei 25.6 88 0.0019 22.7 2.9 31 68-98 119-149 (190)
383 COG5270 PUA domain (predicted 25.3 11 0.00023 28.2 -1.8 39 82-122 5-43 (202)
384 COG3581 Uncharacterized protei 25.0 2.1E+02 0.0044 24.2 5.3 55 68-122 53-112 (420)
385 PLN02817 glutathione dehydroge 25.0 1.7E+02 0.0038 22.9 4.8 47 92-142 71-118 (265)
386 PF09499 RE_ApaLI: ApaLI-like 24.9 2.9E+02 0.0063 20.6 5.5 41 73-113 133-174 (191)
387 PF09936 Methyltrn_RNA_4: SAM- 24.3 86 0.0019 23.4 2.8 27 67-93 117-143 (185)
388 TIGR03439 methyl_EasF probable 24.2 1.3E+02 0.0029 24.4 4.1 39 83-125 77-115 (319)
389 PLN02378 glutathione S-transfe 23.8 1.7E+02 0.0037 21.7 4.5 50 92-147 18-68 (213)
390 PF12617 LdpA_C: Iron-Sulfur b 23.5 2.5E+02 0.0054 21.0 5.0 74 95-169 18-97 (183)
391 cd01840 SGNH_hydrolase_yrhL_li 23.3 2.3E+02 0.005 19.6 4.8 54 82-139 51-116 (150)
392 PRK01045 ispH 4-hydroxy-3-meth 23.3 2.8E+02 0.0062 22.3 5.8 99 68-169 165-279 (298)
393 PF02042 RWP-RK: RWP-RK domain 22.6 62 0.0014 18.8 1.4 16 124-139 31-46 (52)
394 KOG0095 GTPase Rab30, small G 22.4 1.9E+02 0.004 21.1 4.1 31 83-113 80-110 (213)
395 PF14421 LmjF365940-deam: A di 22.3 1.2E+02 0.0026 22.6 3.2 26 94-123 157-182 (193)
396 cd00307 RuBisCO_small_like Rib 22.2 1.4E+02 0.003 19.2 3.1 35 89-123 28-71 (84)
397 KOG1371 UDP-glucose 4-epimeras 22.1 3.6E+02 0.0079 22.2 6.1 64 74-143 19-84 (343)
398 PF06616 BsuBI_PstI_RE: BsuBI/ 21.9 3.2E+02 0.0069 22.2 5.8 53 95-147 162-225 (306)
399 PRK14451 acylphosphatase; Prov 21.7 2.3E+02 0.005 18.2 4.2 39 126-168 23-61 (89)
400 cd03043 GST_N_1 GST_N family, 21.6 1.9E+02 0.0042 17.2 3.9 51 92-148 8-61 (73)
401 PF02591 DUF164: Putative zinc 21.5 1.5E+02 0.0032 17.1 3.0 36 73-108 4-41 (56)
402 TIGR03107 glu_aminopep glutamy 21.2 4.7E+02 0.01 21.5 7.6 82 82-164 249-330 (350)
403 PRK09548 PTS system ascorbate- 21.1 6.1E+02 0.013 22.8 9.3 39 86-124 509-547 (602)
404 PF05176 ATP-synt_10: ATP10 pr 21.0 4.1E+02 0.0089 20.8 8.4 40 127-166 205-247 (252)
405 PRK04011 peptide chain release 20.6 1.1E+02 0.0023 25.9 3.0 30 104-133 372-401 (411)
406 COG4956 Integral membrane prot 20.3 1.3E+02 0.0028 24.6 3.2 70 87-158 231-317 (356)
407 PF14437 MafB19-deam: MafB19-l 20.3 2.5E+02 0.0054 20.2 4.4 36 82-120 99-135 (146)
408 PF10589 NADH_4Fe-4S: NADH-ubi 20.1 27 0.00059 19.6 -0.4 19 93-111 18-36 (46)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-30 Score=183.53 Aligned_cols=108 Identities=45% Similarity=0.861 Sum_probs=103.6
Q ss_pred CCeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEE
Q 030784 64 ESRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLF 143 (171)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~ 143 (171)
.....++..+|++.+.+++.||+|+|||+||+||+.+.|.|+++..+|.+++.++++|+|++.+++.+|+|..+||+++|
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEecCCCHHHHHHHHHHHhcC
Q 030784 144 KNGEKRETVVGTMPKEFYIAAIERVLKS 171 (171)
Q Consensus 144 ~~g~~~~~~~G~~~~~~l~~~i~~~l~~ 171 (171)
++|++++++.|..+.+.++++|++.++.
T Consensus 123 knGe~~d~~vG~~~~~~l~~~i~k~l~~ 150 (150)
T KOG0910|consen 123 KNGEKVDRFVGAVPKEQLRSLIKKFLKL 150 (150)
T ss_pred ECCEEeeeecccCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999863
No 2
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.94 E-value=3.2e-26 Score=158.84 Aligned_cols=106 Identities=11% Similarity=0.196 Sum_probs=99.6
Q ss_pred CCeeEechhhHHHHHhcCCCcEEEEEEcCCChh--hH--HHHHHHHHHHHHh--cCCeEEEEEECCCCHhHHHhCCCCcc
Q 030784 64 ESRAVVTKDSWEKSILNSDTPVLVEFYASWCGP--CR--MVHRVIDEIAGEY--AGRLRCFMVNTDTDLTIAEDYEIKAV 137 (171)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~--C~--~~~~~l~~l~~~~--~~~v~~~~vd~d~~~~l~~~~~i~~~ 137 (171)
+.+.++++++|++.+.+++.++|++||+.||++ |+ ++.|.+.++++++ .+++.|++||+|++++++++|||+++
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~i 88 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEE 88 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccc
Confidence 456788999999999999999999999999988 99 8999999999999 77899999999999999999999999
Q ss_pred cEEEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 138 PVVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 138 Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
||+++|++|+++. +.|.++.+.+.++|+++++
T Consensus 89 PTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~~ 120 (120)
T cd03065 89 DSIYVFKDDEVIE-YDGEFAADTLVEFLLDLIE 120 (120)
T ss_pred cEEEEEECCEEEE-eeCCCCHHHHHHHHHHHhC
Confidence 9999999999887 9999999999999998863
No 3
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.94 E-value=2.1e-25 Score=152.87 Aligned_cols=88 Identities=20% Similarity=0.353 Sum_probs=81.0
Q ss_pred hhhHHHHHhc-CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEE
Q 030784 71 KDSWEKSILN-SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 71 ~~~~~~~~~~-~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
.++|++.+.. .++++||+|||+||++|+.+.|.++++++++++.+.|++||+|++++++++|+|.++||+++|++|+++
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 4677777764 688999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEecCCCH
Q 030784 150 ETVVGTMPK 158 (171)
Q Consensus 150 ~~~~G~~~~ 158 (171)
.+..|..+.
T Consensus 82 ~~~~G~~~~ 90 (114)
T cd02954 82 KIDLGTGNN 90 (114)
T ss_pred EEEcCCCCC
Confidence 999887644
No 4
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.94 E-value=3.3e-25 Score=149.08 Aligned_cols=103 Identities=34% Similarity=0.674 Sum_probs=98.2
Q ss_pred eeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeC
Q 030784 66 RAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKN 145 (171)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~ 145 (171)
+..++.++|.+.+.+.++++||+||++||++|+.+.|.|+++++++++++.|+.+|+++++.++++|+|+++|++++|++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 36789999999888779999999999999999999999999999999789999999999999999999999999999999
Q ss_pred CeEEEEEecCCCHHHHHHHHHHH
Q 030784 146 GEKRETVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 146 g~~~~~~~G~~~~~~l~~~i~~~ 168 (171)
|+...++.|..+.+.|.++|+++
T Consensus 81 g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 81 GKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TEEEEEEESSSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHcC
Confidence 99999999999999999999874
No 5
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.94 E-value=1e-25 Score=155.10 Aligned_cols=102 Identities=14% Similarity=0.167 Sum_probs=94.3
Q ss_pred cCCeeEechhhHHHHH--hcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHH-HhCCCCcccE
Q 030784 63 RESRAVVTKDSWEKSI--LNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIA-EDYEIKAVPV 139 (171)
Q Consensus 63 ~~~~~~l~~~~~~~~~--~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~-~~~~i~~~Pt 139 (171)
...+.++++++|++.+ .+.++++||+|||+||++|+.+.|.++++++++++.+.|++||+|++.+++ ++|+|+++||
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 3568899999999863 578999999999999999999999999999999988999999999999999 5899999999
Q ss_pred EEEEeCCeEEEEEecCCCHHHHHHH
Q 030784 140 VLLFKNGEKRETVVGTMPKEFYIAA 164 (171)
Q Consensus 140 ~~~~~~g~~~~~~~G~~~~~~l~~~ 164 (171)
+++|++|+...++.|..+.+.+..+
T Consensus 88 l~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred EEEEECCccceEEeCCCCHHHHHhh
Confidence 9999999999999999999998876
No 6
>PHA02278 thioredoxin-like protein
Probab=99.93 E-value=6.3e-25 Score=148.86 Aligned_cols=94 Identities=16% Similarity=0.256 Sum_probs=83.6
Q ss_pred chhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC----HhHHHhCCCCcccEEEEEeC
Q 030784 70 TKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD----LTIAEDYEIKAVPVVLLFKN 145 (171)
Q Consensus 70 ~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~----~~l~~~~~i~~~Pt~~~~~~ 145 (171)
+.++|.+.+ ..++++||+|||+|||+|+.+.|.++++++++..++.|+.+|+|++ ++++++|+|+++||+++|++
T Consensus 3 ~~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 3 SLVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred CHHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 356776666 6789999999999999999999999999988766678999999986 68999999999999999999
Q ss_pred CeEEEEEecCCCHHHHHHH
Q 030784 146 GEKRETVVGTMPKEFYIAA 164 (171)
Q Consensus 146 g~~~~~~~G~~~~~~l~~~ 164 (171)
|++++++.|..+.+.+.++
T Consensus 82 G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CEEEEEEeCCCCHHHHHhh
Confidence 9999999998888877654
No 7
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.93 E-value=4.2e-25 Score=149.06 Aligned_cols=99 Identities=22% Similarity=0.386 Sum_probs=91.9
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEe
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK 144 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~ 144 (171)
++.+++.++|++.+ ..+++++|+||++||++|+++.|.++++++++++.+.|+.||+|+++.++++|+|+++||+++|+
T Consensus 2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 56788999998876 56699999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCHHHHHHH
Q 030784 145 NGEKRETVVGTMPKEFYIAA 164 (171)
Q Consensus 145 ~g~~~~~~~G~~~~~~l~~~ 164 (171)
+|+.+.++.|..+.+.+.++
T Consensus 81 ~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 81 SGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCCCcccCCCCCCHHHHHhh
Confidence 99999999999999988765
No 8
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.93 E-value=4.5e-25 Score=149.58 Aligned_cols=101 Identities=25% Similarity=0.494 Sum_probs=93.1
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEe
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK 144 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~ 144 (171)
.+.+++.++|++.+.+.+++++|+||++||++|+.+.|.++++++++++.+.++.+|++++++++++|+|+++||+++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence 35678999999998888899999999999999999999999999999888999999999999999999999999999998
Q ss_pred CC-eEEEEEecCCC-HHHHHHHH
Q 030784 145 NG-EKRETVVGTMP-KEFYIAAI 165 (171)
Q Consensus 145 ~g-~~~~~~~G~~~-~~~l~~~i 165 (171)
+| +.+.++.|..+ .+.+.+||
T Consensus 82 ~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 82 GNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCCCceEccCCCCCHHHHHhhC
Confidence 87 88999999887 88887764
No 9
>PRK09381 trxA thioredoxin; Provisional
Probab=99.93 E-value=1.7e-24 Score=147.92 Aligned_cols=108 Identities=38% Similarity=0.741 Sum_probs=101.6
Q ss_pred cCCeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEE
Q 030784 63 RESRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLL 142 (171)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~ 142 (171)
++.+.+++.++|.+.+.+.+++++|+||++||++|+.+.|.|+++++.+++++.++.+|++.++.++++|+|+.+|++++
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL 81 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence 46788899999998888889999999999999999999999999999998889999999999999999999999999999
Q ss_pred EeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 143 FKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 143 ~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
|++|+.+.+..|..+.+.+.++|++.++
T Consensus 82 ~~~G~~~~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 82 FKNGEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred EeCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999998764
No 10
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-24 Score=147.08 Aligned_cols=93 Identities=29% Similarity=0.609 Sum_probs=82.8
Q ss_pred HHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEEEe
Q 030784 74 WEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVV 153 (171)
Q Consensus 74 ~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~ 153 (171)
........++++||+|||+|||+|+.+.|.+++|+.+|++ +.|++||+|+.++++++|+|+.+|||++|++|+++.++.
T Consensus 13 ~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~v 91 (106)
T KOG0907|consen 13 VLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVV 91 (106)
T ss_pred HHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEe
Confidence 3344445579999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHH
Q 030784 154 GTMPKEFYIAAIERV 168 (171)
Q Consensus 154 G~~~~~~l~~~i~~~ 168 (171)
|.. .+.+++.|++.
T Consensus 92 Ga~-~~~l~~~i~~~ 105 (106)
T KOG0907|consen 92 GAN-KAELEKKIAKH 105 (106)
T ss_pred cCC-HHHHHHHHHhc
Confidence 984 44677777653
No 11
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-24 Score=168.48 Aligned_cols=105 Identities=30% Similarity=0.716 Sum_probs=100.4
Q ss_pred eeEechhhHHHHHhcC--CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEE
Q 030784 66 RAVVTKDSWEKSILNS--DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLF 143 (171)
Q Consensus 66 ~~~l~~~~~~~~~~~~--~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~ 143 (171)
+.++|..||...+..+ .+||+|+||+|||++|+.+.|.|++++.+|++++.+++||+|+++.++.+|||+++||++.|
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEe
Confidence 7899999999998764 56999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 144 KNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 144 ~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
++|+.++.+.|..+.+.+++||++++.
T Consensus 105 ~dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 105 KDGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred eCCcCccccCCCCcHHHHHHHHHHhcC
Confidence 999999999999999999999999864
No 12
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.92 E-value=5.2e-24 Score=142.24 Aligned_cols=94 Identities=27% Similarity=0.544 Sum_probs=87.2
Q ss_pred hHHHHHhcC-CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEE
Q 030784 73 SWEKSILNS-DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRET 151 (171)
Q Consensus 73 ~~~~~~~~~-~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 151 (171)
+|++.+.+. ++++||+||++||++|+++.|.++++++.+++.+.++.+|++++++++++|+|.++|++++|++|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 566777655 7899999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHH
Q 030784 152 VVGTMPKEFYIAAIE 166 (171)
Q Consensus 152 ~~G~~~~~~l~~~i~ 166 (171)
+.|..+.+.+.++|+
T Consensus 82 ~~g~~~~~~l~~~l~ 96 (96)
T cd02956 82 FQGAQPEEQLRQMLD 96 (96)
T ss_pred ecCCCCHHHHHHHhC
Confidence 999999999988874
No 13
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.92 E-value=4.1e-24 Score=146.92 Aligned_cols=102 Identities=19% Similarity=0.333 Sum_probs=92.5
Q ss_pred eEechhhHHHHHhc--CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCCCHhHHHhCCCCcccEEEEE
Q 030784 67 AVVTKDSWEKSILN--SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDTDLTIAEDYEIKAVPVVLLF 143 (171)
Q Consensus 67 ~~l~~~~~~~~~~~--~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~ 143 (171)
..++.++|.+.+.. .++++||+||++||++|+.+.|.++++++++++ ++.++.||+|+++.++++|+|+++||+++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 34578888876654 689999999999999999999999999999975 599999999999999999999999999999
Q ss_pred eCCeEEEEEecCCCHHHHHHHHHHH
Q 030784 144 KNGEKRETVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 144 ~~g~~~~~~~G~~~~~~l~~~i~~~ 168 (171)
++|+.+.+..|..+.+.+.++|+++
T Consensus 87 ~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 87 INGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred ECCEEEEEecCCCCHHHHHHHHhcC
Confidence 9999999999999999999998864
No 14
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.92 E-value=1.1e-23 Score=149.53 Aligned_cols=101 Identities=19% Similarity=0.318 Sum_probs=90.2
Q ss_pred chhhHHHHHh-cCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEE-EEeCCe
Q 030784 70 TKDSWEKSIL-NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVL-LFKNGE 147 (171)
Q Consensus 70 ~~~~~~~~~~-~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~-~~~~g~ 147 (171)
+.++|++.+. ..+++|||+|||+||++|+.+.|.|+++++++++.+.|++||+|++++++++|+|+..|+++ +|++|+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 5778888886 45889999999999999999999999999999988999999999999999999999777666 889999
Q ss_pred -EEEEEec--------CCCHHHHHHHHHHHhc
Q 030784 148 -KRETVVG--------TMPKEFYIAAIERVLK 170 (171)
Q Consensus 148 -~~~~~~G--------~~~~~~l~~~i~~~l~ 170 (171)
++++..| ..+.+++++.++.+++
T Consensus 90 ~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 90 IMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred EEEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 8889999 6788899998887754
No 15
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.91 E-value=1.8e-23 Score=141.79 Aligned_cols=95 Identities=20% Similarity=0.345 Sum_probs=83.1
Q ss_pred chhhHHHHHhcC-CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCH---hHHHhCCCCcccEEEEEeC
Q 030784 70 TKDSWEKSILNS-DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL---TIAEDYEIKAVPVVLLFKN 145 (171)
Q Consensus 70 ~~~~~~~~~~~~-~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~---~l~~~~~i~~~Pt~~~~~~ 145 (171)
+.++|++.+.+. +++|||+||++||++|+.+.|.|+++++++ +++.|+.+|.|++. +++++|+|+++||+++|++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 567888888654 899999999999999999999999999999 45999999999884 8999999999999999999
Q ss_pred CeEEEEEecCCCHHHHHHHHH
Q 030784 146 GEKRETVVGTMPKEFYIAAIE 166 (171)
Q Consensus 146 g~~~~~~~G~~~~~~l~~~i~ 166 (171)
|+++.++.|..+ +.+.+.+.
T Consensus 81 G~~v~~~~G~~~-~~l~~~~~ 100 (103)
T cd02985 81 GEKIHEEEGIGP-DELIGDVL 100 (103)
T ss_pred CeEEEEEeCCCH-HHHHHHHH
Confidence 999999999754 44555443
No 16
>PRK10996 thioredoxin 2; Provisional
Probab=99.91 E-value=5.4e-23 Score=146.70 Aligned_cols=104 Identities=29% Similarity=0.709 Sum_probs=96.2
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEe
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK 144 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~ 144 (171)
....++.++|+..+ +.+++++|+||++||++|+.+.|.|+++++++++++.++.+|.+++++++++|+|+++|++++|+
T Consensus 36 ~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~ 114 (139)
T PRK10996 36 EVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFK 114 (139)
T ss_pred CCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEE
Confidence 45667888997754 66899999999999999999999999999999888999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHh
Q 030784 145 NGEKRETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 145 ~g~~~~~~~G~~~~~~l~~~i~~~l 169 (171)
+|+++.++.|..+.+.+.++|++++
T Consensus 115 ~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 115 NGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999864
No 17
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.90 E-value=3.5e-23 Score=141.35 Aligned_cols=100 Identities=28% Similarity=0.487 Sum_probs=88.7
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhc------CCeEEEEEECCCCHhHHHhCCCCccc
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYA------GRLRCFMVNTDTDLTIAEDYEIKAVP 138 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~------~~v~~~~vd~d~~~~l~~~~~i~~~P 138 (171)
.+.++++++|++.+ +.+++++|+||++||++|+++.|.|+++++.+. +++.++.+|+|++++++++|+|+++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 45788999998765 778899999999999999999999999998753 24899999999999999999999999
Q ss_pred EEEEEeCCeE-EEEEecCCCHHHHHHHH
Q 030784 139 VVLLFKNGEK-RETVVGTMPKEFYIAAI 165 (171)
Q Consensus 139 t~~~~~~g~~-~~~~~G~~~~~~l~~~i 165 (171)
|+++|++|++ ...+.|..+.+.|.+||
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999984 47788999999988875
No 18
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.90 E-value=8.1e-23 Score=138.36 Aligned_cols=97 Identities=25% Similarity=0.553 Sum_probs=86.4
Q ss_pred echhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCe
Q 030784 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGE 147 (171)
Q Consensus 69 l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~ 147 (171)
-+.++|++.+ +.+++++|+|||+||++|+.+.|.++++++++++ .+.|+.+|.| +++++++|+|+++||+++|++|+
T Consensus 5 ~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 5 NNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred cCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence 3677787754 6789999999999999999999999999999975 4789999999 78999999999999999999999
Q ss_pred EEEEEecCCCHHHHHHHHHHH
Q 030784 148 KRETVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 148 ~~~~~~G~~~~~~l~~~i~~~ 168 (171)
.+.+..|. +.+.+.++|+++
T Consensus 83 ~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 83 LVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred EEEEEecC-ChHHHHHHHhhC
Confidence 99999996 778888888753
No 19
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.90 E-value=4.2e-23 Score=140.67 Aligned_cols=97 Identities=15% Similarity=0.283 Sum_probs=89.9
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEcCC--ChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEE
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYASW--CGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLL 142 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a~w--C~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~ 142 (171)
...+++..+|++.+ +.+..+||.||++| |++|+.+.|.|++++++|++.+.|+.+|+|++++++.+|+|+++||+++
T Consensus 11 ~~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~ 89 (111)
T cd02965 11 GWPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLF 89 (111)
T ss_pred CCcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence 44678899998655 77899999999997 9999999999999999999989999999999999999999999999999
Q ss_pred EeCCeEEEEEecCCCHHHHH
Q 030784 143 FKNGEKRETVVGTMPKEFYI 162 (171)
Q Consensus 143 ~~~g~~~~~~~G~~~~~~l~ 162 (171)
|++|+++++..|..+.+++.
T Consensus 90 fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 90 FRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EECCEEEEEEeCccCHHHHh
Confidence 99999999999999988765
No 20
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.90 E-value=4e-23 Score=140.85 Aligned_cols=101 Identities=23% Similarity=0.459 Sum_probs=92.2
Q ss_pred eeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC--CHhHHHhCCCCcccEEEEE
Q 030784 66 RAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT--DLTIAEDYEIKAVPVVLLF 143 (171)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~--~~~l~~~~~i~~~Pt~~~~ 143 (171)
+.+++.++|++.+.+.+++++|+||++||++|+.+.|.++++++.+++.+.++.+|+++ +++++++|+|+++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 45789999999998889999999999999999999999999999998889999999998 8999999999999999999
Q ss_pred eCCe-----EEEEEecCCCHHHHHHHHH
Q 030784 144 KNGE-----KRETVVGTMPKEFYIAAIE 166 (171)
Q Consensus 144 ~~g~-----~~~~~~G~~~~~~l~~~i~ 166 (171)
++|+ ....+.|..+.+.+.+||.
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred eCCCcccccccccccCccCHHHHHHHhC
Confidence 8775 4567889999999998873
No 21
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.90 E-value=4.8e-23 Score=139.08 Aligned_cols=90 Identities=20% Similarity=0.341 Sum_probs=81.0
Q ss_pred HHHHHh-cCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC-CCHhHHHhCCCCcccEEEEEeCCeEEEE
Q 030784 74 WEKSIL-NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD-TDLTIAEDYEIKAVPVVLLFKNGEKRET 151 (171)
Q Consensus 74 ~~~~~~-~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d-~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 151 (171)
+.+.+. .+|++++|+|||+||++|+++.|.|+++++++++ +.++.+|.+ ++++++++|+|+++||+++|++| .+.+
T Consensus 9 ~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~ 86 (100)
T cd02999 9 ALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVR 86 (100)
T ss_pred HHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeE
Confidence 334443 4699999999999999999999999999999986 889999998 88999999999999999999999 8889
Q ss_pred EecCCCHHHHHHHH
Q 030784 152 VVGTMPKEFYIAAI 165 (171)
Q Consensus 152 ~~G~~~~~~l~~~i 165 (171)
+.|..+.+.+.+||
T Consensus 87 ~~G~~~~~~l~~f~ 100 (100)
T cd02999 87 YNGTRTLDSLAAFY 100 (100)
T ss_pred ecCCCCHHHHHhhC
Confidence 99999999988875
No 22
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.90 E-value=1.3e-22 Score=136.73 Aligned_cols=99 Identities=22% Similarity=0.418 Sum_probs=87.6
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCCCHhHHHhCCCCcccEEEEE
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDTDLTIAEDYEIKAVPVVLLF 143 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~ 143 (171)
.+.+++.++|++.+ + ++ ++|+||++||++|+.+.|.|+++++.+.+ ++.++.+|+++++.++++|+|+++||+++|
T Consensus 2 ~v~~l~~~~f~~~~-~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 2 NVVELTDSNWTLVL-E-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA 78 (101)
T ss_pred ceEEcChhhHHHHh-C-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence 35678999998765 3 33 78999999999999999999999998764 599999999999999999999999999999
Q ss_pred eCCeEEEEEecCCCHHHHHHHHHH
Q 030784 144 KNGEKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 144 ~~g~~~~~~~G~~~~~~l~~~i~~ 167 (171)
++|+. .++.|..+.+.+.++|++
T Consensus 79 ~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 79 KDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCCCE-EEecCCCCHHHHHHHHhC
Confidence 99974 788999999999988863
No 23
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.89 E-value=1.8e-22 Score=153.99 Aligned_cols=107 Identities=25% Similarity=0.455 Sum_probs=98.0
Q ss_pred CCeeEechhhHHHHHhcC----CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccE
Q 030784 64 ESRAVVTKDSWEKSILNS----DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPV 139 (171)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~----~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt 139 (171)
..+.++++++|++.+... +++++|+||++||++|+.+.|.|+++++++++.+.++.+|++++++++++|+|+++||
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT 109 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence 457899999999877543 5899999999999999999999999999999889999999999999999999999999
Q ss_pred EEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 140 VLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 140 ~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
+++|++|+.+....|..+.+.+.+++++..+
T Consensus 110 l~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 110 LLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred EEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 9999999998888898999999999887653
No 24
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.89 E-value=1.6e-22 Score=136.14 Aligned_cols=98 Identities=22% Similarity=0.536 Sum_probs=88.8
Q ss_pred eeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC---CeEEEEEECCCCHhHHHhCCCCcccEEEE
Q 030784 66 RAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG---RLRCFMVNTDTDLTIAEDYEIKAVPVVLL 142 (171)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~ 142 (171)
+.++++++|++.+.+ + +++|+||++||++|+.+.|.++++++++.+ ++.++.+|++++..++++|+|.++||+++
T Consensus 2 ~~~l~~~~f~~~~~~-~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAE-G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhc-C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 457889999888743 3 599999999999999999999999999976 69999999999999999999999999999
Q ss_pred EeCCeEEEEEecCCCHHHHHHHH
Q 030784 143 FKNGEKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 143 ~~~g~~~~~~~G~~~~~~l~~~i 165 (171)
|++|+.+.++.|..+.+.+.++|
T Consensus 80 ~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCeeeEeeCCCCHHHHHhhC
Confidence 99999999999999999887764
No 25
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.89 E-value=2.7e-22 Score=134.25 Aligned_cols=101 Identities=40% Similarity=0.864 Sum_probs=93.4
Q ss_pred echhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeE
Q 030784 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEK 148 (171)
Q Consensus 69 l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~ 148 (171)
++.+++.+.+.+.+++++|+||++||++|+.+.+.++++++++++++.|+.+|+++++.++++|+|..+|++++|++|+.
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence 35678888887778899999999999999999999999999998789999999999999999999999999999999999
Q ss_pred EEEEecCCCHHHHHHHHHHHh
Q 030784 149 RETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 149 ~~~~~G~~~~~~l~~~i~~~l 169 (171)
+..+.|..+.+.+.++|++.+
T Consensus 81 ~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 81 VDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred eeeecCCCCHHHHHHHHHhhC
Confidence 999999999999999998764
No 26
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.89 E-value=3.6e-22 Score=136.08 Aligned_cols=98 Identities=16% Similarity=0.334 Sum_probs=84.7
Q ss_pred hhhHHHHHhcC-CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEE
Q 030784 71 KDSWEKSILNS-DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 71 ~~~~~~~~~~~-~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
.++|++.+... +++|||.|+|+||++|+.+.|.|+++++++++.+.|+.||+|+.++++++|+|+..||+++|++|+.+
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 45677777655 99999999999999999999999999999986699999999999999999999999999999999988
Q ss_pred EEEecCC----------CHHHHHHHHHHH
Q 030784 150 ETVVGTM----------PKEFYIAAIERV 168 (171)
Q Consensus 150 ~~~~G~~----------~~~~l~~~i~~~ 168 (171)
..-.|.. +.+++++.++-+
T Consensus 82 ~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 82 KVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred EEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 7555543 346777777654
No 27
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.89 E-value=2.9e-22 Score=135.07 Aligned_cols=100 Identities=27% Similarity=0.534 Sum_probs=91.7
Q ss_pred eeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeC
Q 030784 66 RAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKN 145 (171)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~ 145 (171)
+.+++++++.+.+.+.+++++|+||++||++|+++.|.|.++++++.+++.++.+|++++++++++|+|+++|++++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence 46789999999888888889999999999999999999999999998889999999999999999999999999999988
Q ss_pred C-eEEEEEecCCCHHHHHHHH
Q 030784 146 G-EKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 146 g-~~~~~~~G~~~~~~l~~~i 165 (171)
| +....+.|..+.+.+.+|+
T Consensus 82 ~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 82 GKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCcceeecCCCCCHHHHHHHh
Confidence 8 5566788999999998875
No 28
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.88 E-value=1.6e-22 Score=139.35 Aligned_cols=91 Identities=22% Similarity=0.476 Sum_probs=83.5
Q ss_pred CCeeEechhhHHHHHhcC--CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEE
Q 030784 64 ESRAVVTKDSWEKSILNS--DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVL 141 (171)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~--~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~ 141 (171)
..+.+++.++|.+.+.+. +++++|+||++||++|+.+.|.++++++++++ +.|++||++++ +++++|+|+++||++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 356788999999888766 48999999999999999999999999999985 89999999999 999999999999999
Q ss_pred EEeCCeEEEEEecCC
Q 030784 142 LFKNGEKRETVVGTM 156 (171)
Q Consensus 142 ~~~~g~~~~~~~G~~ 156 (171)
+|++|+.+.+..|..
T Consensus 82 ~f~~G~~v~~~~G~~ 96 (113)
T cd02957 82 VYKNGELIDNIVGFE 96 (113)
T ss_pred EEECCEEEEEEecHH
Confidence 999999999998854
No 29
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.88 E-value=1.6e-21 Score=139.60 Aligned_cols=98 Identities=23% Similarity=0.577 Sum_probs=87.2
Q ss_pred hhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC--HhHHHhCCCCcccEEEEE-eCCeE
Q 030784 72 DSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD--LTIAEDYEIKAVPVVLLF-KNGEK 148 (171)
Q Consensus 72 ~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~--~~l~~~~~i~~~Pt~~~~-~~g~~ 148 (171)
..+.+ +...++++||+||++||++|+.+.|.+.++++++.+++.|+.||+|.. ..++++|+|.++|++++| ++|++
T Consensus 11 ~~~~~-a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 11 TPPEV-ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred CCHHH-HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 34443 446789999999999999999999999999999987788999988865 589999999999999999 58999
Q ss_pred EEEEecCCCHHHHHHHHHHHhc
Q 030784 149 RETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 149 ~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
+.++.|..+.+.+.++|+++++
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc
Confidence 9999999999999999999875
No 30
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.88 E-value=2.1e-21 Score=130.16 Aligned_cols=93 Identities=30% Similarity=0.508 Sum_probs=86.5
Q ss_pred HHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEEEe
Q 030784 74 WEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVV 153 (171)
Q Consensus 74 ~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~ 153 (171)
....+.+.+++++|+||++||+.|+.+.+.++++++++++++.++.+|.|++++++++|+|.++|++++|++|+++.++.
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~ 84 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEIS 84 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEe
Confidence 34556778999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHH
Q 030784 154 GTMPKEFYIAAIE 166 (171)
Q Consensus 154 G~~~~~~l~~~i~ 166 (171)
|..+.+++.++|+
T Consensus 85 g~~~~~~~~~~l~ 97 (97)
T cd02949 85 GVKMKSEYREFIE 97 (97)
T ss_pred CCccHHHHHHhhC
Confidence 9999999888874
No 31
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.88 E-value=1.7e-21 Score=131.41 Aligned_cols=99 Identities=27% Similarity=0.480 Sum_probs=88.7
Q ss_pred eeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhc--CCeEEEEEECCC--CHhHHHhCCCCcccEEE
Q 030784 66 RAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYA--GRLRCFMVNTDT--DLTIAEDYEIKAVPVVL 141 (171)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~d~--~~~l~~~~~i~~~Pt~~ 141 (171)
+.++++++|...+ +.+++++|+||++||++|+.+.|.++++++.+. +.+.++.+|+++ +..++++|+|+++|+++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 4677888897766 456699999999999999999999999999887 568899999998 89999999999999999
Q ss_pred EEeCCeEEEEEecCCCHHHHHHHH
Q 030784 142 LFKNGEKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 142 ~~~~g~~~~~~~G~~~~~~l~~~i 165 (171)
+|++|+.+.++.|....+.+.+||
T Consensus 81 ~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999999999999999999888764
No 32
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.88 E-value=2e-21 Score=140.15 Aligned_cols=91 Identities=21% Similarity=0.400 Sum_probs=83.6
Q ss_pred CCeeEechhhHHHHHhc-CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCCCHhHHHhCCCCc-----
Q 030784 64 ESRAVVTKDSWEKSILN-SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDTDLTIAEDYEIKA----- 136 (171)
Q Consensus 64 ~~~~~l~~~~~~~~~~~-~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~i~~----- 136 (171)
+.+.+++.++|++.+.. .++++||+||++||++|+.+.|.++++++++++ ++.|+.||+|++++++++|+|..
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 56788999999887754 467999999999999999999999999999874 59999999999999999999988
Q ss_pred -ccEEEEEeCCeEEEEEec
Q 030784 137 -VPVVLLFKNGEKRETVVG 154 (171)
Q Consensus 137 -~Pt~~~~~~g~~~~~~~G 154 (171)
+||+++|++|+++.++.|
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCEEEEEECCEEEEEEec
Confidence 999999999999999987
No 33
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.88 E-value=9.5e-22 Score=132.04 Aligned_cols=100 Identities=25% Similarity=0.513 Sum_probs=90.8
Q ss_pred echhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC--CeEEEEEECCCCHhHHHhCCCCcccEEEEEeCC
Q 030784 69 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG--RLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNG 146 (171)
Q Consensus 69 l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g 146 (171)
|++++|.+.+. .+++++|+||++||++|+.+.+.++++++.+.+ ++.++.+|+++++.++++|+|+++|++++|++|
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 46788877764 899999999999999999999999999999886 699999999999999999999999999999888
Q ss_pred eEEEEEecCCCHHHHHHHHHHHh
Q 030784 147 EKRETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 147 ~~~~~~~G~~~~~~l~~~i~~~l 169 (171)
+....+.|..+.+++..+|++.+
T Consensus 80 ~~~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 80 KKPVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred CcceeecCCCCHHHHHHHHHhcC
Confidence 77788999999999999998753
No 34
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.87 E-value=2.6e-21 Score=129.23 Aligned_cols=94 Identities=23% Similarity=0.521 Sum_probs=83.3
Q ss_pred hhhHHHHHhcC-CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEE
Q 030784 71 KDSWEKSILNS-DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 71 ~~~~~~~~~~~-~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
.++|++.+... +++++|+||++||++|+.+.+.|+++++++...+.++.+|.+++++++++|+|+++||+++|++|+++
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 56787777665 69999999999999999999999999999766799999999999999999999999999999999999
Q ss_pred EEEecCCCHHHHHHHH
Q 030784 150 ETVVGTMPKEFYIAAI 165 (171)
Q Consensus 150 ~~~~G~~~~~~l~~~i 165 (171)
.++.|. ..+.+.+.|
T Consensus 82 ~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 82 DRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEeCC-CHHHHHHhh
Confidence 999997 455565554
No 35
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.87 E-value=4e-21 Score=132.43 Aligned_cols=90 Identities=23% Similarity=0.412 Sum_probs=80.7
Q ss_pred CeeEech-hhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEE
Q 030784 65 SRAVVTK-DSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLF 143 (171)
Q Consensus 65 ~~~~l~~-~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~ 143 (171)
.+..++. ++|.+.+ ..+++|||+||++||++|+.+.|.|+++++++++ +.|++||.+++++++++|+|+.+||+++|
T Consensus 5 ~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 5 KYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred CeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 4566666 7787766 4568999999999999999999999999999986 99999999999999999999999999999
Q ss_pred eCCeEEEEEecCC
Q 030784 144 KNGEKRETVVGTM 156 (171)
Q Consensus 144 ~~g~~~~~~~G~~ 156 (171)
++|++++++.|..
T Consensus 83 k~G~~v~~~~g~~ 95 (113)
T cd02989 83 KNGKTVDRIVGFE 95 (113)
T ss_pred ECCEEEEEEECcc
Confidence 9999999887754
No 36
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.87 E-value=3e-21 Score=130.14 Aligned_cols=99 Identities=27% Similarity=0.586 Sum_probs=89.3
Q ss_pred eeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC--CeEEEEEECCCCHhHHHhCCCCcccEEEEE
Q 030784 66 RAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG--RLRCFMVNTDTDLTIAEDYEIKAVPVVLLF 143 (171)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~ 143 (171)
+.+++.++|++.+.+.+++++|+||++||++|+.+.|.++++++.+.+ ++.++.+|++++ +++..+++.++|++++|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 468899999998888889999999999999999999999999999876 599999999987 68899999999999999
Q ss_pred eCCe--EEEEEecCCCHHHHHHHH
Q 030784 144 KNGE--KRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 144 ~~g~--~~~~~~G~~~~~~l~~~i 165 (171)
++|+ ...++.|..+.+.+.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 8887 567789999999888775
No 37
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.86 E-value=3e-21 Score=130.25 Aligned_cols=100 Identities=24% Similarity=0.486 Sum_probs=89.3
Q ss_pred eeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhc--CCeEEEEEECCC-CHhHHHhCCCCcccEEEE
Q 030784 66 RAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYA--GRLRCFMVNTDT-DLTIAEDYEIKAVPVVLL 142 (171)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~d~-~~~l~~~~~i~~~Pt~~~ 142 (171)
+.+++++++...+.+.+++++|+||++||++|+.+.|.++++++.+. +++.++.+|+++ ++.++++|+|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 35778899988777778899999999999999999999999999987 469999999999 999999999999999999
Q ss_pred EeCC-eEEEEEecCCCHHHHHHHH
Q 030784 143 FKNG-EKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 143 ~~~g-~~~~~~~G~~~~~~l~~~i 165 (171)
|++| +....+.|..+.+.+.+||
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 9766 6677788989999888774
No 38
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.86 E-value=5.9e-21 Score=130.66 Aligned_cols=101 Identities=19% Similarity=0.392 Sum_probs=86.7
Q ss_pred CeeEechhhHHHHHh--cCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC-CHhHHH-hCCCCcccE
Q 030784 65 SRAVVTKDSWEKSIL--NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT-DLTIAE-DYEIKAVPV 139 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~--~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~-~~~l~~-~~~i~~~Pt 139 (171)
.+.+++.++|+..+. +.+++++|.||++||++|+++.|.|+++++.+.+ ++.++.||+|. +..+++ .|+|+.+||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 567899999988874 4589999999999999999999999999999986 49999999998 578887 499999999
Q ss_pred EEEEeCC-eEEEEEecC-CCHHHHHHHH
Q 030784 140 VLLFKNG-EKRETVVGT-MPKEFYIAAI 165 (171)
Q Consensus 140 ~~~~~~g-~~~~~~~G~-~~~~~l~~~i 165 (171)
+++|++| .....+.|. ++.+.|..||
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999654 567778884 7888887764
No 39
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.85 E-value=1.2e-20 Score=127.91 Aligned_cols=94 Identities=26% Similarity=0.519 Sum_probs=82.4
Q ss_pred hhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhc---CCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeE
Q 030784 72 DSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYA---GRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEK 148 (171)
Q Consensus 72 ~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~---~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~ 148 (171)
++|++ + ..+++++|+||++||++|+++.|.|+++++++. ..+.+..+|+++.+.++++|+|+++||+++|++| .
T Consensus 7 ~~~~~-~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~ 83 (104)
T cd03000 7 DSFKD-V-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-L 83 (104)
T ss_pred hhhhh-h-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-C
Confidence 56665 3 457799999999999999999999999999984 3488999999999999999999999999999777 4
Q ss_pred EEEEecCCCHHHHHHHHHHH
Q 030784 149 RETVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 149 ~~~~~G~~~~~~l~~~i~~~ 168 (171)
...+.|..+.+.+.+++++.
T Consensus 84 ~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ceeecCCCCHHHHHHHHHhh
Confidence 56789999999999999875
No 40
>PTZ00051 thioredoxin; Provisional
Probab=99.85 E-value=2.2e-20 Score=124.96 Aligned_cols=93 Identities=32% Similarity=0.634 Sum_probs=80.6
Q ss_pred eEec-hhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeC
Q 030784 67 AVVT-KDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKN 145 (171)
Q Consensus 67 ~~l~-~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~ 145 (171)
.+++ .+++.+ +.+.+++++|+||++||++|+.+.+.++++++++++ +.++.+|++++..++++|+|.++|++++|++
T Consensus 3 ~~i~~~~~~~~-~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 3 HIVTSQAEFES-TLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTFKVFKN 80 (98)
T ss_pred EEecCHHHHHH-HHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEEEEEeC
Confidence 3444 445544 557789999999999999999999999999999875 8999999999999999999999999999999
Q ss_pred CeEEEEEecCCCHHHHH
Q 030784 146 GEKRETVVGTMPKEFYI 162 (171)
Q Consensus 146 g~~~~~~~G~~~~~~l~ 162 (171)
|+++.++.|. ..+.+.
T Consensus 81 g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 81 GSVVDTLLGA-NDEALK 96 (98)
T ss_pred CeEEEEEeCC-CHHHhh
Confidence 9999999997 445444
No 41
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.85 E-value=1.2e-20 Score=139.43 Aligned_cols=91 Identities=18% Similarity=0.346 Sum_probs=82.3
Q ss_pred CCeeEech-hhHHHHHhcCC--CcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEE
Q 030784 64 ESRAVVTK-DSWEKSILNSD--TPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVV 140 (171)
Q Consensus 64 ~~~~~l~~-~~~~~~~~~~~--~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~ 140 (171)
..+.+++. ++|.+.+.+.+ ++|||+||++||++|+.+.|.|++++++|+. +.|++||+++. .++.+|+|+.+||+
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~~-~l~~~f~v~~vPTl 139 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASAT-GASDEFDTDALPAL 139 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccch-hhHHhCCCCCCCEE
Confidence 46678888 89998887654 5999999999999999999999999999985 99999999988 99999999999999
Q ss_pred EEEeCCeEEEEEecCC
Q 030784 141 LLFKNGEKRETVVGTM 156 (171)
Q Consensus 141 ~~~~~g~~~~~~~G~~ 156 (171)
++|++|+.+.++.|..
T Consensus 140 llyk~G~~v~~~vG~~ 155 (175)
T cd02987 140 LVYKGGELIGNFVRVT 155 (175)
T ss_pred EEEECCEEEEEEechH
Confidence 9999999999887653
No 42
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.85 E-value=9.1e-21 Score=130.66 Aligned_cols=98 Identities=19% Similarity=0.368 Sum_probs=84.9
Q ss_pred hhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEE
Q 030784 71 KDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRE 150 (171)
Q Consensus 71 ~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 150 (171)
.+++.+.+ ..++.++|+||++||++|+.+.|.++++++.+ +++.+..+|.|++++++++|+|.++||+++|++|+...
T Consensus 12 ~~~~~~~l-~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~ 89 (113)
T cd02975 12 KEEFFKEM-KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDG 89 (113)
T ss_pred HHHHHHHh-CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecc
Confidence 34454544 45677999999999999999999999999987 56999999999999999999999999999998876655
Q ss_pred --EEecCCCHHHHHHHHHHHhc
Q 030784 151 --TVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 151 --~~~G~~~~~~l~~~i~~~l~ 170 (171)
++.|..+..++.++|+.++.
T Consensus 90 ~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 90 GIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred eEEEEecCchHHHHHHHHHHHh
Confidence 67899999999999998864
No 43
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.85 E-value=7e-21 Score=129.02 Aligned_cols=94 Identities=17% Similarity=0.412 Sum_probs=82.5
Q ss_pred hhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHH---HHHHHHhcCCeEEEEEECCC----CHhHHHhCCCCcccEEEEEe
Q 030784 72 DSWEKSILNSDTPVLVEFYASWCGPCRMVHRVI---DEIAGEYAGRLRCFMVNTDT----DLTIAEDYEIKAVPVVLLFK 144 (171)
Q Consensus 72 ~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~d~----~~~l~~~~~i~~~Pt~~~~~ 144 (171)
+++.+ +.+.+++++|+||++||++|+++.+.+ .++++.+++++.++.+|.++ .++++++|+|.++||+++|+
T Consensus 2 ~~~~~-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQ-ALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHH-HHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 45554 446789999999999999999999988 68888887679999999987 57899999999999999997
Q ss_pred --CCeEEEEEecCCCHHHHHHHHH
Q 030784 145 --NGEKRETVVGTMPKEFYIAAIE 166 (171)
Q Consensus 145 --~g~~~~~~~G~~~~~~l~~~i~ 166 (171)
+|+.+.++.|..+.+++.++|+
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCcccccccCHHHHHHHhC
Confidence 7999999999999999888774
No 44
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.84 E-value=3.6e-20 Score=123.28 Aligned_cols=97 Identities=28% Similarity=0.578 Sum_probs=86.0
Q ss_pred EechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHh--cCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeC
Q 030784 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEY--AGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKN 145 (171)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~--~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~ 145 (171)
+++.++|.+.+.+.+ +++|+||++||++|+.+.+.++++++.+ .+++.++.+|++++..++++|+|+++|++++|++
T Consensus 2 ~l~~~~~~~~i~~~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKDSK-DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhCCC-cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 467888877665544 9999999999999999999999999999 5779999999999999999999999999999977
Q ss_pred C-eEEEEEecCCCHHHHHHHH
Q 030784 146 G-EKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 146 g-~~~~~~~G~~~~~~l~~~i 165 (171)
| +...++.|..+.+.+.+++
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 6 7888889988888887764
No 45
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.6e-20 Score=140.10 Aligned_cols=98 Identities=23% Similarity=0.543 Sum_probs=88.1
Q ss_pred chhhHHHHHhcC-CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeE
Q 030784 70 TKDSWEKSILNS-DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEK 148 (171)
Q Consensus 70 ~~~~~~~~~~~~-~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~ 148 (171)
++..|...+... .+.|+|+|+|+|||||+++.|.+..++.+|++ ..|++||+|+.+..+..+||...|||++|++|++
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k 86 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK 86 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence 456688777655 68999999999999999999999999999986 7799999999999999999999999999999999
Q ss_pred EEEEecCCCHHHHHHHHHHHh
Q 030784 149 RETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 149 ~~~~~G~~~~~~l~~~i~~~l 169 (171)
++++.|. +..-+++.|.+++
T Consensus 87 id~~qGA-d~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 87 IDQIQGA-DASGLEEKVAKYA 106 (288)
T ss_pred eeeecCC-CHHHHHHHHHHHh
Confidence 9999998 6666788777765
No 46
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.83 E-value=2.3e-19 Score=125.42 Aligned_cols=93 Identities=20% Similarity=0.408 Sum_probs=81.2
Q ss_pred HhcCC-CcEEEEEEcCCChhhHHHHHHHH---HHHHHhcCCeEEEEEECCCC-------------HhHHHhCCCCcccEE
Q 030784 78 ILNSD-TPVLVEFYASWCGPCRMVHRVID---EIAGEYAGRLRCFMVNTDTD-------------LTIAEDYEIKAVPVV 140 (171)
Q Consensus 78 ~~~~~-~~vvV~f~a~wC~~C~~~~~~l~---~l~~~~~~~v~~~~vd~d~~-------------~~l~~~~~i~~~Pt~ 140 (171)
+.+.+ ++++|+||++||++|+.+.+.+. ++.+.+.+++.++.+|.|++ .+++++|+|+++||+
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~ 88 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTV 88 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence 44567 99999999999999999999884 66666766788999999864 789999999999999
Q ss_pred EEEe-C-CeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 141 LLFK-N-GEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 141 ~~~~-~-g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
++|+ + |+++.++.|..+.+.+.++|+.+++
T Consensus 89 ~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 89 IFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred EEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 9996 4 6999999999999999999998875
No 47
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.81 E-value=6.3e-19 Score=123.01 Aligned_cols=98 Identities=8% Similarity=0.172 Sum_probs=79.7
Q ss_pred eeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCH-----------hHHHhCC-
Q 030784 66 RAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL-----------TIAEDYE- 133 (171)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~-----------~l~~~~~- 133 (171)
...++.+++.+.+ ++++.++|+|+++||++|+++.|.|++++++. ++.++.+|+|.+. ++.++|+
T Consensus 8 ~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 8 LEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred ceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 3567888887666 56788999999999999999999999999983 4678888888543 5556665
Q ss_pred ---CCcccEEEEEeCCeEEEEEec-CCCHHHHHHHHH
Q 030784 134 ---IKAVPVVLLFKNGEKRETVVG-TMPKEFYIAAIE 166 (171)
Q Consensus 134 ---i~~~Pt~~~~~~g~~~~~~~G-~~~~~~l~~~i~ 166 (171)
|.++||+++|++|+.+.+..| ..+.+++.+++.
T Consensus 85 ~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 85 PTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 556999999999999999998 556888887753
No 48
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.81 E-value=4.2e-19 Score=132.81 Aligned_cols=88 Identities=19% Similarity=0.422 Sum_probs=79.6
Q ss_pred CCeeEechhhHHHHHhcC--CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEE
Q 030784 64 ESRAVVTKDSWEKSILNS--DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVL 141 (171)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~--~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~ 141 (171)
..+.+++.++|...+... +++|||+||++||++|+.+.+.|++++++|+. +.|++||.++. ..+|+|+.+||++
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~~---~~~~~i~~lPTll 157 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQC---IPNYPDKNLPTIL 157 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHHh---HhhCCCCCCCEEE
Confidence 567889999999888765 45999999999999999999999999999985 99999999853 6899999999999
Q ss_pred EEeCCeEEEEEecC
Q 030784 142 LFKNGEKRETVVGT 155 (171)
Q Consensus 142 ~~~~g~~~~~~~G~ 155 (171)
+|++|+.+.++.|.
T Consensus 158 iyk~G~~v~~ivG~ 171 (192)
T cd02988 158 VYRNGDIVKQFIGL 171 (192)
T ss_pred EEECCEEEEEEeCc
Confidence 99999999999885
No 49
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.81 E-value=4.4e-19 Score=122.42 Aligned_cols=85 Identities=27% Similarity=0.532 Sum_probs=75.1
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhc---CCeEEEEEECC--CCHhHHHhCCCCcccE
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYA---GRLRCFMVNTD--TDLTIAEDYEIKAVPV 139 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~---~~v~~~~vd~d--~~~~l~~~~~i~~~Pt 139 (171)
.+.+++.++|.+.+.+.++++||+||++||++|+.+.|.|+++++.+. +.+.++.+|++ .+++++++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 357889999999988888999999999999999999999999999875 35889999975 4678999999999999
Q ss_pred EEEEeCCeEE
Q 030784 140 VLLFKNGEKR 149 (171)
Q Consensus 140 ~~~~~~g~~~ 149 (171)
+++|++|+..
T Consensus 82 ~~lf~~~~~~ 91 (114)
T cd02992 82 LRYFPPFSKE 91 (114)
T ss_pred EEEECCCCcc
Confidence 9999888743
No 50
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.80 E-value=1.3e-18 Score=113.55 Aligned_cols=92 Identities=38% Similarity=0.802 Sum_probs=81.6
Q ss_pred hHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEEE
Q 030784 73 SWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETV 152 (171)
Q Consensus 73 ~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~ 152 (171)
+|...+ +.+++++|+||++||++|+.+.+.++++++. .+++.++.+|++++.+++++|++.++|+++++++|+.+..+
T Consensus 2 ~~~~~~-~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 2 EFEELI-KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred chHHHH-hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence 454444 3449999999999999999999999999998 55699999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHH
Q 030784 153 VGTMPKEFYIAAIE 166 (171)
Q Consensus 153 ~G~~~~~~l~~~i~ 166 (171)
.|..+.+.+.++|+
T Consensus 80 ~g~~~~~~l~~~i~ 93 (93)
T cd02947 80 VGADPKEELEEFLE 93 (93)
T ss_pred ecCCCHHHHHHHhC
Confidence 99988888888763
No 51
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.9e-19 Score=149.29 Aligned_cols=106 Identities=27% Similarity=0.543 Sum_probs=96.7
Q ss_pred ecCCeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC---CeEEEEEECCCCHhHHHhCCCCccc
Q 030784 62 VRESRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG---RLRCFMVNTDTDLTIAEDYEIKAVP 138 (171)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~d~~~~l~~~~~i~~~P 138 (171)
..+.+.+|+.++|...+ ..+..++|.|||||||+|+++.|.+++.+..+.. .+.+++||+.++.++|.+|+|+++|
T Consensus 23 ~~~~Vl~Lt~dnf~~~i-~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETI-NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred cccceEEEecccHHHHh-ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 35678999999997654 6788899999999999999999999999998864 5899999999999999999999999
Q ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHHH
Q 030784 139 VVLLFKNGEKRETVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 139 t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~ 168 (171)
|+.+|++|+....|.|.+..+.+.+|+++.
T Consensus 102 TlkiFrnG~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 102 TLKIFRNGRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred eEEEEecCCcceeccCcccHHHHHHHHHhc
Confidence 999999999878899999999999999874
No 52
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.80 E-value=1e-18 Score=145.28 Aligned_cols=107 Identities=17% Similarity=0.331 Sum_probs=91.2
Q ss_pred ecCCeeEechhhHHHHHh--cCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCC-eEEEEEECCCCH-hHH-HhCCCCc
Q 030784 62 VRESRAVVTKDSWEKSIL--NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGR-LRCFMVNTDTDL-TIA-EDYEIKA 136 (171)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~--~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~d~~~-~l~-~~~~i~~ 136 (171)
.++.+.+|+.++|++.+. +.++++||+||++||++|+.+.|.|+++++++.+. +.|+.||+|.++ +++ ++|+|++
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc
Confidence 456788999999999874 57899999999999999999999999999999764 899999999764 454 7899999
Q ss_pred ccEEEEEeCCe-EEEEEe-cCCCHHHHHHHHHHH
Q 030784 137 VPVVLLFKNGE-KRETVV-GTMPKEFYIAAIERV 168 (171)
Q Consensus 137 ~Pt~~~~~~g~-~~~~~~-G~~~~~~l~~~i~~~ 168 (171)
+||+++|++|+ ....|. |.++.+.|..||+.+
T Consensus 429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred cceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 99999998875 334565 578999999999864
No 53
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.80 E-value=1.2e-18 Score=145.19 Aligned_cols=105 Identities=27% Similarity=0.501 Sum_probs=94.4
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC---CeEEEEEECCCCHhHHHhCCCCcccEEE
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG---RLRCFMVNTDTDLTIAEDYEIKAVPVVL 141 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~d~~~~l~~~~~i~~~Pt~~ 141 (171)
.+.+++.++|.+.+ +.+++++|+|||+||++|+++.|.+.++++.+.+ ++.++.||+++++++|++|+|.++||++
T Consensus 2 ~v~~l~~~~~~~~i-~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 80 (462)
T TIGR01130 2 DVLVLTKDNFDDFI-KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLK 80 (462)
T ss_pred CceECCHHHHHHHH-hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEE
Confidence 45688999997766 5678999999999999999999999999988753 4999999999999999999999999999
Q ss_pred EEeCCeE-EEEEecCCCHHHHHHHHHHHhc
Q 030784 142 LFKNGEK-RETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 142 ~~~~g~~-~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
+|++|+. +..+.|..+.+.+.+++++.+.
T Consensus 81 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 81 IFRNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred EEeCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 9999988 7889999999999999988753
No 54
>PTZ00102 disulphide isomerase; Provisional
Probab=99.79 E-value=1.2e-18 Score=146.31 Aligned_cols=107 Identities=26% Similarity=0.495 Sum_probs=97.0
Q ss_pred CCeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC--CeEEEEEECCCCHhHHHhCCCCcccEEE
Q 030784 64 ESRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG--RLRCFMVNTDTDLTIAEDYEIKAVPVVL 141 (171)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~i~~~Pt~~ 141 (171)
..+..++.++|++.+.+.+++|+|+|||+||++|+.+.|.|+++++.+.+ .+.++.+|++.+...+++|+++++||++
T Consensus 357 ~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~ 436 (477)
T PTZ00102 357 GPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTIL 436 (477)
T ss_pred CCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEE
Confidence 35788999999999889999999999999999999999999999998864 5889999999999999999999999999
Q ss_pred EEeCCeEE-EEEecCCCHHHHHHHHHHHhc
Q 030784 142 LFKNGEKR-ETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 142 ~~~~g~~~-~~~~G~~~~~~l~~~i~~~l~ 170 (171)
+|++|+++ .++.|.++.+.+.++|++...
T Consensus 437 ~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 437 FVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred EEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 99877665 478999999999999998754
No 55
>PLN02309 5'-adenylylsulfate reductase
Probab=99.79 E-value=2.2e-18 Score=143.25 Aligned_cols=106 Identities=19% Similarity=0.400 Sum_probs=91.6
Q ss_pred cCCeeEechhhHHHHHh--cCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECC-CCHhHHH-hCCCCcc
Q 030784 63 RESRAVVTKDSWEKSIL--NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTD-TDLTIAE-DYEIKAV 137 (171)
Q Consensus 63 ~~~~~~l~~~~~~~~~~--~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d-~~~~l~~-~~~i~~~ 137 (171)
++.+.+++.++|++.+. +.++++||+||++||++|+.+.|.|+++++++.+ ++.|+.+|+| ++.++++ +|+|+++
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~ 423 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 423 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCcee
Confidence 45678899999988774 5789999999999999999999999999999975 4999999999 8888986 6999999
Q ss_pred cEEEEEeCCeE-EEEEe-cCCCHHHHHHHHHHH
Q 030784 138 PVVLLFKNGEK-RETVV-GTMPKEFYIAAIERV 168 (171)
Q Consensus 138 Pt~~~~~~g~~-~~~~~-G~~~~~~l~~~i~~~ 168 (171)
||+++|++|.. ...|. |.++.+.|..||+.+
T Consensus 424 PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 424 PTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 99999987653 34565 468999999999875
No 56
>PTZ00102 disulphide isomerase; Provisional
Probab=99.78 E-value=3.6e-18 Score=143.48 Aligned_cols=105 Identities=22% Similarity=0.482 Sum_probs=94.4
Q ss_pred CCeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhc---CCeEEEEEECCCCHhHHHhCCCCcccEE
Q 030784 64 ESRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYA---GRLRCFMVNTDTDLTIAEDYEIKAVPVV 140 (171)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~---~~v~~~~vd~d~~~~l~~~~~i~~~Pt~ 140 (171)
..+..++.++|+..+ +.++.++|+||++||++|+++.|.+.++++.+. .++.++.||++++.+++++|+|+++||+
T Consensus 32 ~~v~~l~~~~f~~~i-~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 32 EHVTVLTDSTFDKFI-TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI 110 (477)
T ss_pred CCcEEcchhhHHHHH-hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence 457889999998765 567899999999999999999999999987764 3599999999999999999999999999
Q ss_pred EEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 141 LLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 141 ~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
++|++|+.+ ++.|.++.+.+.+++++++.
T Consensus 111 ~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 111 KFFNKGNPV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred EEEECCceE-EecCCCCHHHHHHHHHHhhC
Confidence 999999877 89999999999999998764
No 57
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.77 E-value=2.9e-18 Score=117.89 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=81.8
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEc--CCCh---hhHHHHHHHHHHHHHhcCCeEEEEEECC-----CCHhHHHhCCC
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYA--SWCG---PCRMVHRVIDEIAGEYAGRLRCFMVNTD-----TDLTIAEDYEI 134 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a--~wC~---~C~~~~~~l~~l~~~~~~~v~~~~vd~d-----~~~~l~~~~~i 134 (171)
....|+.++|++.+ ..++.++|.||| +||+ +|+.+.|.+.+.+. .|.+..||++ ++.+||++|+|
T Consensus 2 g~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 2 GCVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred CeeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCC
Confidence 35678999998855 678889999999 9999 77777766655443 3889999994 57889999999
Q ss_pred C--cccEEEEEeCCe--EEEEEecC-CCHHHHHHHHHHH
Q 030784 135 K--AVPVVLLFKNGE--KRETVVGT-MPKEFYIAAIERV 168 (171)
Q Consensus 135 ~--~~Pt~~~~~~g~--~~~~~~G~-~~~~~l~~~i~~~ 168 (171)
+ ++||+++|++|+ ....|.|. ++.+.|.+||.+.
T Consensus 77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 77 DKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9 999999999885 44578896 9999999999864
No 58
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.77 E-value=1e-17 Score=108.42 Aligned_cols=81 Identities=28% Similarity=0.468 Sum_probs=73.7
Q ss_pred EEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHH
Q 030784 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAA 164 (171)
Q Consensus 85 vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~ 164 (171)
.|..||++||++|+.+.+.+++++++++..+.++.+|.+++++++++||+.++|++++ +|+. ++.|..+.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence 4778999999999999999999999998779999999999999999999999999986 7763 68898899999999
Q ss_pred HHHHh
Q 030784 165 IERVL 169 (171)
Q Consensus 165 i~~~l 169 (171)
|++.|
T Consensus 78 l~~~~ 82 (82)
T TIGR00411 78 IKKRL 82 (82)
T ss_pred HHhhC
Confidence 98764
No 59
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.76 E-value=8.2e-18 Score=113.38 Aligned_cols=88 Identities=23% Similarity=0.314 Sum_probs=80.9
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCC--cccEEEEEeC--CeEEEEEecCCC
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIK--AVPVVLLFKN--GEKRETVVGTMP 157 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~--~~Pt~~~~~~--g~~~~~~~G~~~ 157 (171)
++++++.|+++||++|+.+.+.++++++++.+++.|+++|.|+++.+++.|||. ++|+++++++ |++.....|..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 789999999999999999999999999999989999999999999999999999 9999999987 777666666678
Q ss_pred HHHHHHHHHHHh
Q 030784 158 KEFYIAAIERVL 169 (171)
Q Consensus 158 ~~~l~~~i~~~l 169 (171)
.+.+.+||++++
T Consensus 92 ~~~l~~fi~~~~ 103 (103)
T cd02982 92 AESLEEFVEDFL 103 (103)
T ss_pred HHHHHHHHHhhC
Confidence 999999998764
No 60
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.75 E-value=9.2e-18 Score=116.20 Aligned_cols=81 Identities=19% Similarity=0.387 Sum_probs=71.0
Q ss_pred chhhHHHHHhcC-CCcEEEEEEc-------CCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC-------CHhHHHhCCC
Q 030784 70 TKDSWEKSILNS-DTPVLVEFYA-------SWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT-------DLTIAEDYEI 134 (171)
Q Consensus 70 ~~~~~~~~~~~~-~~~vvV~f~a-------~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~-------~~~l~~~~~i 134 (171)
+.++|.+.+... ++++||+||| +||++|+.+.|.++++.+++++++.|+.||+++ +.+++++|+|
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I 87 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL 87 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc
Confidence 567787777654 7899999999 999999999999999999999779999999976 4699999999
Q ss_pred C-cccEEEEEeCCeEEE
Q 030784 135 K-AVPVVLLFKNGEKRE 150 (171)
Q Consensus 135 ~-~~Pt~~~~~~g~~~~ 150 (171)
. ++||+++|++|+++.
T Consensus 88 ~~~iPT~~~~~~~~~l~ 104 (119)
T cd02952 88 TTGVPTLLRWKTPQRLV 104 (119)
T ss_pred ccCCCEEEEEcCCceec
Confidence 8 999999998876543
No 61
>PTZ00062 glutaredoxin; Provisional
Probab=99.75 E-value=2.5e-17 Score=123.97 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=78.0
Q ss_pred chhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEE
Q 030784 70 TKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 70 ~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
+.+++.+.+......+|++|||+||++|+.+.+.+.+|+++|++ +.|+.||.| |+|.++|+|++|++|+++
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 56778777654447789999999999999999999999999986 999999987 999999999999999999
Q ss_pred EEEecCCCHHHHHHHHHHHh
Q 030784 150 ETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 150 ~~~~G~~~~~~l~~~i~~~l 169 (171)
+++.|. +...+...++++.
T Consensus 76 ~r~~G~-~~~~~~~~~~~~~ 94 (204)
T PTZ00062 76 NSLEGC-NTSTLVSFIRGWA 94 (204)
T ss_pred eeeeCC-CHHHHHHHHHHHc
Confidence 999998 4666777776643
No 62
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.71 E-value=7.1e-17 Score=122.98 Aligned_cols=98 Identities=20% Similarity=0.382 Sum_probs=79.1
Q ss_pred chhhHHHHHhcCCCcEEEEEEc---CCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCCCHhHHHhCCCCcccEEEEEeC
Q 030784 70 TKDSWEKSILNSDTPVLVEFYA---SWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKN 145 (171)
Q Consensus 70 ~~~~~~~~~~~~~~~vvV~f~a---~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~ 145 (171)
..+.|.+.+ +++ ..++.|++ +||++|+.+.|.+++++++++. .+.++.+|.|++++++++|+|.++||+++|++
T Consensus 9 ~~~~~~~~~-~~~-~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~ 86 (215)
T TIGR02187 9 LKELFLKEL-KNP-VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEE 86 (215)
T ss_pred HHHHHHHhc-CCC-eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeC
Confidence 344544444 233 44556777 9999999999999999999964 24466666669999999999999999999999
Q ss_pred CeEEE-EEecCCCHHHHHHHHHHHh
Q 030784 146 GEKRE-TVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 146 g~~~~-~~~G~~~~~~l~~~i~~~l 169 (171)
|+.+. ++.|..+.+.+.++|+.++
T Consensus 87 g~~~~~~~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 87 GKDGGIRYTGIPAGYEFAALIEDIV 111 (215)
T ss_pred CeeeEEEEeecCCHHHHHHHHHHHH
Confidence 99985 8999999999999998775
No 63
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.71 E-value=3.5e-17 Score=113.41 Aligned_cols=96 Identities=19% Similarity=0.391 Sum_probs=72.3
Q ss_pred hHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCH-hHHHhCCCCc--ccEEEEEe-CCeE
Q 030784 73 SWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL-TIAEDYEIKA--VPVVLLFK-NGEK 148 (171)
Q Consensus 73 ~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~-~l~~~~~i~~--~Pt~~~~~-~g~~ 148 (171)
+-.+.....+++++|+|||+||++|+.+.|.+.+..........|+.+++|.+. .+.+.|++.+ +||++++. +|++
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence 333555667999999999999999999999999987765444567777777664 4567899986 99999995 9999
Q ss_pred EEE---EecCCCHHHHHHHHHHH
Q 030784 149 RET---VVGTMPKEFYIAAIERV 168 (171)
Q Consensus 149 ~~~---~~G~~~~~~l~~~i~~~ 168 (171)
+.+ ..|....+.+...|+.+
T Consensus 90 ~~~~~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 90 HPEIINKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred chhhccCCCCccccccCCCHHHH
Confidence 885 44555655555555544
No 64
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.70 E-value=1.7e-16 Score=132.39 Aligned_cols=104 Identities=22% Similarity=0.481 Sum_probs=92.0
Q ss_pred CCeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC---CeEEEEEECCCCHhHHHhCCCCcccEE
Q 030784 64 ESRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG---RLRCFMVNTDTDLTIAEDYEIKAVPVV 140 (171)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~d~~~~l~~~~~i~~~Pt~ 140 (171)
..+..++.++|.+.+.+.++.+||+||++||++|+.+.|.++++++.+.+ ++.++.+|++.+. +.. ++|+++|++
T Consensus 346 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~ 423 (462)
T TIGR01130 346 GPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTI 423 (462)
T ss_pred CccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEE
Confidence 35678999999999888899999999999999999999999999999987 7999999999874 444 999999999
Q ss_pred EEEeCCeEE--EEEecCCCHHHHHHHHHHHh
Q 030784 141 LLFKNGEKR--ETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 141 ~~~~~g~~~--~~~~G~~~~~~l~~~i~~~l 169 (171)
++|++|++. ..+.|..+.+.+.++|++..
T Consensus 424 ~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 424 KFVPAGKKSEPVPYDGDRTLEDFSKFIAKHA 454 (462)
T ss_pred EEEeCCCCcCceEecCcCCHHHHHHHHHhcC
Confidence 999887763 56789899999999998764
No 65
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.68 E-value=6.6e-17 Score=125.75 Aligned_cols=87 Identities=24% Similarity=0.473 Sum_probs=77.3
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC---CeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEEEecCCC
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG---RLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMP 157 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~ 157 (171)
.+..++|+||||||++|+++.|+|+++.-++.+ .+.+.++|+..-+.++.+|||+++||+.+|++|.. ..|.|.++
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a-~dYRG~R~ 120 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHA-IDYRGGRE 120 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCee-eecCCCcc
Confidence 467999999999999999999999999877764 59999999999999999999999999999988855 45788889
Q ss_pred HHHHHHHHHHH
Q 030784 158 KEFYIAAIERV 168 (171)
Q Consensus 158 ~~~l~~~i~~~ 168 (171)
++.++++-.+.
T Consensus 121 Kd~iieFAhR~ 131 (468)
T KOG4277|consen 121 KDAIIEFAHRC 131 (468)
T ss_pred HHHHHHHHHhc
Confidence 99999887653
No 66
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.67 E-value=1.8e-16 Score=123.25 Aligned_cols=100 Identities=32% Similarity=0.576 Sum_probs=89.1
Q ss_pred chhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHh----c-CCeEEEEEECCCCHhHHHhCCCCcccEEEEEe
Q 030784 70 TKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEY----A-GRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK 144 (171)
Q Consensus 70 ~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~----~-~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~ 144 (171)
+.+|++. +.+.+..|+|.|||+||+..++++|++++.++.+ + +++.++.||||.+..++.+|.|..+||+.+|+
T Consensus 2 t~~N~~~-il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDS-ILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHH-hhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 4456654 4566999999999999999999999999888765 4 57999999999999999999999999999999
Q ss_pred CCeEEE-EEecCCCHHHHHHHHHHHhc
Q 030784 145 NGEKRE-TVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 145 ~g~~~~-~~~G~~~~~~l~~~i~~~l~ 170 (171)
+|..+. .|.|.+..+.+.++|++.+.
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhc
Confidence 999988 78999999999999998875
No 67
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.67 E-value=1e-15 Score=114.05 Aligned_cols=88 Identities=23% Similarity=0.506 Sum_probs=74.0
Q ss_pred cCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCH-----------------------hHHHhCCCCc
Q 030784 80 NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL-----------------------TIAEDYEIKA 136 (171)
Q Consensus 80 ~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~-----------------------~l~~~~~i~~ 136 (171)
..+++++|+||++||++|+++.|.++++.++ ++.++.|+.++++ .+++.|||.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 3689999999999999999999999998753 4778888875442 2455789999
Q ss_pred ccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 137 VPVVLLF-KNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 137 ~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
+|+.+++ ++|+++..+.|..+.+.+.+.|+.+++
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 9977776 699999999999999999999988875
No 68
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.67 E-value=1.2e-15 Score=116.19 Aligned_cols=96 Identities=22% Similarity=0.371 Sum_probs=78.5
Q ss_pred eEechhhHHHHHhcCCCcE-EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeC
Q 030784 67 AVVTKDSWEKSILNSDTPV-LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKN 145 (171)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~v-vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~ 145 (171)
..++.+..+ .+...++++ |+.||++||++|+.+.+.+++++.+++ ++.+..+|.+++++++++|+|.++||++++++
T Consensus 118 ~~L~~~~~~-~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~-~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~ 195 (215)
T TIGR02187 118 PGLSEKTVE-LLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND-KILGEMIEANENPDLAEKYGVMSVPKIVINKG 195 (215)
T ss_pred CCCCHHHHH-HHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC-ceEEEEEeCCCCHHHHHHhCCccCCEEEEecC
Confidence 345444443 333445554 455999999999999999999999864 59999999999999999999999999999988
Q ss_pred CeEEEEEecCCCHHHHHHHHHH
Q 030784 146 GEKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 146 g~~~~~~~G~~~~~~l~~~i~~ 167 (171)
|+. +.|..+.+++.++|++
T Consensus 196 ~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 196 VEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred CEE---EECCCCHHHHHHHHHh
Confidence 864 8899999999999876
No 69
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.67 E-value=5.9e-16 Score=130.41 Aligned_cols=88 Identities=26% Similarity=0.448 Sum_probs=76.4
Q ss_pred cCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhc-CCeEEEEE----------------------------ECCCCHhHHH
Q 030784 80 NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYA-GRLRCFMV----------------------------NTDTDLTIAE 130 (171)
Q Consensus 80 ~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~-~~v~~~~v----------------------------d~d~~~~l~~ 130 (171)
..+++|||+|||+||++|+++.|.|++++++++ +++.++.| +.|.+..+++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 478999999999999999999999999999987 34665544 3355678999
Q ss_pred hCCCCcccEEEEE-eCCeEEEEEecCCCHHHHHHHHHH
Q 030784 131 DYEIKAVPVVLLF-KNGEKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 131 ~~~i~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~ 167 (171)
.|+|+++|+++++ ++|+++..+.|.++.+++.++|+.
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 9999999999776 799999999999999999999984
No 70
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.5e-16 Score=132.16 Aligned_cols=101 Identities=24% Similarity=0.498 Sum_probs=87.5
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC--CeEEEEEECCCCHhHHHhCCCCcccEEEE
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG--RLRCFMVNTDTDLTIAEDYEIKAVPVVLL 142 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~ 142 (171)
.++.+..++|++.+.+.+|-|+|.|||||||+|+++.|.|++|++.|.+ +|.++++|...|.- ...++.++||+++
T Consensus 367 pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~~~~~~~fPTI~~ 444 (493)
T KOG0190|consen 367 PVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--PSLKVDGFPTILF 444 (493)
T ss_pred CeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--ccccccccceEEE
Confidence 5789999999999999999999999999999999999999999999985 58899999877632 2456777999999
Q ss_pred EeCCe--EEEEEecCCCHHHHHHHHHH
Q 030784 143 FKNGE--KRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 143 ~~~g~--~~~~~~G~~~~~~l~~~i~~ 167 (171)
|+.|. ....|.|.++.+++..+|++
T Consensus 445 ~pag~k~~pv~y~g~R~le~~~~fi~~ 471 (493)
T KOG0190|consen 445 FPAGHKSNPVIYNGDRTLEDLKKFIKK 471 (493)
T ss_pred ecCCCCCCCcccCCCcchHHHHhhhcc
Confidence 98666 35567899999999999875
No 71
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.66 E-value=2.7e-16 Score=107.51 Aligned_cols=86 Identities=19% Similarity=0.478 Sum_probs=67.2
Q ss_pred cCCCcEEEEEEcCCChhhHHHHHHHHH---HHHHhcCCeEEEEEECCCC--------------------HhHHHhCCCCc
Q 030784 80 NSDTPVLVEFYASWCGPCRMVHRVIDE---IAGEYAGRLRCFMVNTDTD--------------------LTIAEDYEIKA 136 (171)
Q Consensus 80 ~~~~~vvV~f~a~wC~~C~~~~~~l~~---l~~~~~~~v~~~~vd~d~~--------------------~~l~~~~~i~~ 136 (171)
.+++++||+||++||++|+.+.+.+.+ +...+.+++.++.++++.. .+++++|||.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 468999999999999999999999875 4445555688888888653 35899999999
Q ss_pred ccEEEEEe-CCeEEEEEecCCCHHHHHHHH
Q 030784 137 VPVVLLFK-NGEKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 137 ~Pt~~~~~-~g~~~~~~~G~~~~~~l~~~i 165 (171)
+||+++++ +|+++.++.|..+.+++.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999995 899999999999999988765
No 72
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.66 E-value=1.2e-15 Score=110.30 Aligned_cols=87 Identities=20% Similarity=0.353 Sum_probs=68.9
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC------------HhHH-HhC---CCCcccEEEEE-
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD------------LTIA-EDY---EIKAVPVVLLF- 143 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~------------~~l~-~~~---~i~~~Pt~~~~- 143 (171)
.++..+|+||++||++|+++.|.+++++++|+ +.++.|+.|+. .... +.| ++.++|+.+++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 35667999999999999999999999999985 55666666542 2333 345 88999999998
Q ss_pred eCCeE-EEEEecCCCHHHHHHHHHHHh
Q 030784 144 KNGEK-RETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 144 ~~g~~-~~~~~G~~~~~~l~~~i~~~l 169 (171)
++|++ +..+.|..+.+++.+.|+++|
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 46665 557899999999999998875
No 73
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.66 E-value=9.2e-16 Score=131.65 Aligned_cols=99 Identities=18% Similarity=0.508 Sum_probs=83.1
Q ss_pred chhhHHHHHh---cCCCcEEEEEEcCCChhhHHHHHHH---HHHHHHhcCCeEEEEEECCCC----HhHHHhCCCCcccE
Q 030784 70 TKDSWEKSIL---NSDTPVLVEFYASWCGPCRMVHRVI---DEIAGEYAGRLRCFMVNTDTD----LTIAEDYEIKAVPV 139 (171)
Q Consensus 70 ~~~~~~~~~~---~~~~~vvV~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~d~~----~~l~~~~~i~~~Pt 139 (171)
+.+++++.+. +++|+|+|+||++||++|+.+++.+ +++.+++++ +.++++|.+++ ++++++|++.++|+
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt 537 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYNVLGLPT 537 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence 4566766654 3579999999999999999999875 677888764 88999998753 68999999999999
Q ss_pred EEEEe-CCeEE--EEEecCCCHHHHHHHHHHHh
Q 030784 140 VLLFK-NGEKR--ETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 140 ~~~~~-~g~~~--~~~~G~~~~~~l~~~i~~~l 169 (171)
+++|+ +|+++ .++.|..+.+++.++++++.
T Consensus 538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred EEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 99995 88884 67899999999999999864
No 74
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.65 E-value=1.2e-15 Score=97.91 Aligned_cols=73 Identities=21% Similarity=0.337 Sum_probs=61.0
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEEEecC-CCHHHHHHH
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGT-MPKEFYIAA 164 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~-~~~~~l~~~ 164 (171)
.|+||++||++|+.+.|.+++++++++..+.++.+| +.+.+.+||+.++|++++ +|+++ +.|. .+.+++.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 478999999999999999999999998778887776 355688999999999999 99887 6775 454666665
Q ss_pred H
Q 030784 165 I 165 (171)
Q Consensus 165 i 165 (171)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 5
No 75
>PHA02125 thioredoxin-like protein
Probab=99.65 E-value=2.4e-15 Score=96.16 Aligned_cols=70 Identities=20% Similarity=0.439 Sum_probs=58.4
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEEEecCCC-HHHHHHH
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMP-KEFYIAA 164 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~-~~~l~~~ 164 (171)
+++||++||++|+.+.|.|+++. ..++.+|.+++++++++|+|+++||++ +|+.+.++.|... ..++++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 78999999999999999997653 457899999999999999999999987 7888888989633 2444443
No 76
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.64 E-value=3.3e-15 Score=104.36 Aligned_cols=98 Identities=10% Similarity=0.149 Sum_probs=74.9
Q ss_pred hhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHH---HHHHHHhcCCeEEEEEECCCCHhHHHh--------CCCCcccE
Q 030784 71 KDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVI---DEIAGEYAGRLRCFMVNTDTDLTIAED--------YEIKAVPV 139 (171)
Q Consensus 71 ~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~d~~~~l~~~--------~~i~~~Pt 139 (171)
++.+ +.+.+.+|+|+|+|+++||++|+.+.... .++.+.+..+..++.+|.++.++++++ ||+.++|+
T Consensus 5 ~eal-~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 5 EEAF-EKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred HHHH-HHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 4444 55667899999999999999999998732 466766665688999999998887663 68999999
Q ss_pred EEEE-eCCeEEEEEecC-----CCHHHHHHHHHHHh
Q 030784 140 VLLF-KNGEKRETVVGT-----MPKEFYIAAIERVL 169 (171)
Q Consensus 140 ~~~~-~~g~~~~~~~G~-----~~~~~l~~~i~~~l 169 (171)
++++ .+|+.+....+. .+...+.++++++.
T Consensus 84 ~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (124)
T cd02955 84 NVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIR 119 (124)
T ss_pred EEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHH
Confidence 9999 589998876554 23345666666554
No 77
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.64 E-value=3.6e-15 Score=109.95 Aligned_cols=89 Identities=26% Similarity=0.478 Sum_probs=73.9
Q ss_pred cCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEEC-----------------------CCCHhHHHhCCCCc
Q 030784 80 NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNT-----------------------DTDLTIAEDYEIKA 136 (171)
Q Consensus 80 ~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~-----------------------d~~~~l~~~~~i~~ 136 (171)
..+++++|+||++||++|+++.|.++++.+. ++.++.|+. |.+..+++.|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 3589999999999999999999999998764 355666664 33446677899999
Q ss_pred ccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHhcC
Q 030784 137 VPVVLLF-KNGEKRETVVGTMPKEFYIAAIERVLKS 171 (171)
Q Consensus 137 ~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~l~~ 171 (171)
+|+.+++ ++|+++.++.|..+.+++.++|++++++
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~~ 173 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAMEK 173 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhhC
Confidence 9976666 6999999999999999999999998863
No 78
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.9e-15 Score=124.17 Aligned_cols=106 Identities=28% Similarity=0.521 Sum_probs=94.0
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEe
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK 144 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~ 144 (171)
....++..++...+...+.+++|+||++||++|+.+.|.+.+++..+.+.+.+..||++++.++|++|+|+++||+.+|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~ 109 (383)
T KOG0191|consen 30 VVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFR 109 (383)
T ss_pred chhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEc
Confidence 34455567777778888999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 145 NGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 145 ~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
.|.....+.|..+.+.+.+++...++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (383)
T KOG0191|consen 110 PGKKPIDYSGPRNAESLAEFLIKELE 135 (383)
T ss_pred CCCceeeccCcccHHHHHHHHHHhhc
Confidence 88667778888888988888776654
No 79
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.62 E-value=5.5e-15 Score=103.31 Aligned_cols=79 Identities=30% Similarity=0.570 Sum_probs=66.4
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEEC-----------------------CCCHhHHHhCCCCcc
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNT-----------------------DTDLTIAEDYEIKAV 137 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~-----------------------d~~~~l~~~~~i~~~ 137 (171)
.++++||+||++||++|+.+.|.++++.++++ +.++.|+. |.+..+++.|++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 48899999999999999999999999998863 66666653 455678889999999
Q ss_pred cEEEEE-eCCeEEEEEecCCCHHHH
Q 030784 138 PVVLLF-KNGEKRETVVGTMPKEFY 161 (171)
Q Consensus 138 Pt~~~~-~~g~~~~~~~G~~~~~~l 161 (171)
|+.+++ ++|+++.++.|..+.+.+
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 976666 699999999999887754
No 80
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.62 E-value=9.7e-15 Score=114.75 Aligned_cols=87 Identities=21% Similarity=0.327 Sum_probs=73.2
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC-----------CHhHHHhCCCCcccEEEEEeC-CeE
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT-----------DLTIAEDYEIKAVPVVLLFKN-GEK 148 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~-----------~~~l~~~~~i~~~Pt~~~~~~-g~~ 148 (171)
.++++||+||++||++|+.+.|.|++++++|+ +.++.|+.|. +..++++|||.++|++++++. |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 47899999999999999999999999999986 5666777665 357899999999999999974 555
Q ss_pred EE-EEecCCCHHHHHHHHHHHh
Q 030784 149 RE-TVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 149 ~~-~~~G~~~~~~l~~~i~~~l 169 (171)
+. ...|..+.+++.+.|..+.
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAA 264 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHh
Confidence 55 4569999999998887654
No 81
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.61 E-value=2.3e-14 Score=100.48 Aligned_cols=104 Identities=13% Similarity=0.220 Sum_probs=88.1
Q ss_pred eeEechhhHHHHHhcCCCcEEEEEEcC--CChhhHHHHHHHHHHHHHhcC-CeEEEEEECCCCHhHHHhCCCCcccEEEE
Q 030784 66 RAVVTKDSWEKSILNSDTPVLVEFYAS--WCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDTDLTIAEDYEIKAVPVVLL 142 (171)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vvV~f~a~--wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~ 142 (171)
...++..++++.+. .+...||+|-.+ .++.+..+.-+|++++++|++ ++.+++||.|++++++.+|||+++||+++
T Consensus 19 ~~~~~~~~~~~~~~-~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~ 97 (132)
T PRK11509 19 WTPVSESRLDDWLT-QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLV 97 (132)
T ss_pred CCccccccHHHHHh-CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence 34455566766663 444555655543 579999999999999999984 59999999999999999999999999999
Q ss_pred EeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 143 FKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 143 ~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
|++|+.+..+.|..+++++.++|++++.
T Consensus 98 FkdGk~v~~i~G~~~k~~l~~~I~~~L~ 125 (132)
T PRK11509 98 FTGGNYRGVLNGIHPWAELINLMRGLVE 125 (132)
T ss_pred EECCEEEEEEeCcCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999875
No 82
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.59 E-value=1.3e-14 Score=103.90 Aligned_cols=71 Identities=14% Similarity=0.320 Sum_probs=59.9
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC--------CeEEEEEECCCCH-------------------------h
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG--------RLRCFMVNTDTDL-------------------------T 127 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~--------~v~~~~vd~d~~~-------------------------~ 127 (171)
.+++++|+|||+||++|+++.|.|+++.+++.+ ++.++.|+.|++. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 589999999999999999999999998876643 4889999887532 4
Q ss_pred HHHhCCCCcccEEEEE-eCCeEEEE
Q 030784 128 IAEDYEIKAVPVVLLF-KNGEKRET 151 (171)
Q Consensus 128 l~~~~~i~~~Pt~~~~-~~g~~~~~ 151 (171)
++++|+|.++|+.+++ .+|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 7778999999999999 48888764
No 83
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.59 E-value=3.5e-14 Score=104.12 Aligned_cols=89 Identities=22% Similarity=0.544 Sum_probs=78.1
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------CHhHHHhCCCCcc
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT----------------------DLTIAEDYEIKAV 137 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~----------------------~~~l~~~~~i~~~ 137 (171)
.+++++|+||++||++|+...+.+.++++++++ ++.++.++.|. +.++++.|+|..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 578999999999999999999999999999975 48888888753 4577899999999
Q ss_pred cEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHh
Q 030784 138 PVVLLF-KNGEKRETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 138 Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~l 169 (171)
|+++++ ++|+.+..+.|..+.+++.++++++.
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~~ 172 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKIK 172 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHhc
Confidence 998888 58999989999999999999988753
No 84
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.58 E-value=2.1e-14 Score=95.37 Aligned_cols=67 Identities=30% Similarity=0.695 Sum_probs=56.5
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhc--CCeEEEEEECCCCH-------------------------hHHHhCCC
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYA--GRLRCFMVNTDTDL-------------------------TIAEDYEI 134 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~d~~~-------------------------~l~~~~~i 134 (171)
||+++|+||++||++|+++.|.+.++.++++ +++.++.|+.|+.. .+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999999 67999999997642 47788999
Q ss_pred CcccEEEEEe-CCeE
Q 030784 135 KAVPVVLLFK-NGEK 148 (171)
Q Consensus 135 ~~~Pt~~~~~-~g~~ 148 (171)
.++|++++++ +|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 9999999984 6753
No 85
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.57 E-value=2.1e-14 Score=130.57 Aligned_cols=90 Identities=17% Similarity=0.313 Sum_probs=78.7
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCC-eEEEEEEC---------------------------CCCHhHHHhC
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGR-LRCFMVNT---------------------------DTDLTIAEDY 132 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~---------------------------d~~~~l~~~~ 132 (171)
.+++|||+|||+||++|+.+.|.|+++.++|+++ +.++.|.. |.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 5899999999999999999999999999999864 77777742 2345678899
Q ss_pred CCCcccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 133 EIKAVPVVLLF-KNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 133 ~i~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
+|.++|+++++ ++|+++.++.|....+.+.++|++++.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99999999999 699999999999999999999998764
No 86
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.56 E-value=3.5e-14 Score=88.50 Aligned_cols=62 Identities=19% Similarity=0.386 Sum_probs=55.5
Q ss_pred EEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEE
Q 030784 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 85 vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
-|+.|+++||++|+++.+.++++++.++ ++.+..+|.+++++++++||+.++|++++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 4788999999999999999999988754 59999999999999999999999999977 77554
No 87
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.56 E-value=2.7e-14 Score=100.73 Aligned_cols=71 Identities=23% Similarity=0.517 Sum_probs=60.1
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC---CeEEEEEECCCCH-------------------------hHHHhC
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG---RLRCFMVNTDTDL-------------------------TIAEDY 132 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~d~~~-------------------------~l~~~~ 132 (171)
.|+++||+||++||++|+.+.|.++++.+++.+ ++.++.|+.|... .+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 589999999999999999999999999988875 4788888877542 456779
Q ss_pred CCCcccEEEEEe-CCeEEEE
Q 030784 133 EIKAVPVVLLFK-NGEKRET 151 (171)
Q Consensus 133 ~i~~~Pt~~~~~-~g~~~~~ 151 (171)
+|.++|++++++ +|+++.+
T Consensus 96 ~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred CCCCCCEEEEECCCCCEEch
Confidence 999999999995 7877654
No 88
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.55 E-value=3.4e-14 Score=99.83 Aligned_cols=71 Identities=24% Similarity=0.524 Sum_probs=60.4
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC---CeEEEEEECCCC------------------------HhHHHhCC
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG---RLRCFMVNTDTD------------------------LTIAEDYE 133 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~d~~------------------------~~l~~~~~ 133 (171)
.++++||+||++||++|+.+.|.+.++.+++.+ ++.++.++.|.. ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 578999999999999999999999999888753 477888887754 35778999
Q ss_pred CCcccEEEEEe-CCeEEEE
Q 030784 134 IKAVPVVLLFK-NGEKRET 151 (171)
Q Consensus 134 i~~~Pt~~~~~-~g~~~~~ 151 (171)
|.++|++++++ +|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 99999999995 8887764
No 89
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.55 E-value=1.6e-13 Score=105.58 Aligned_cols=90 Identities=18% Similarity=0.154 Sum_probs=72.2
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC-------C----HhHH-HhCCC-------------
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT-------D----LTIA-EDYEI------------- 134 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~-------~----~~l~-~~~~i------------- 134 (171)
.++++||+||++||++|+...|.|++++++|.+ ++.++.|+++. . .+++ +++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 479999999999999999999999999999975 48888888641 1 2222 23221
Q ss_pred ---------------------CcccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 135 ---------------------KAVPVVLLF-KNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 135 ---------------------~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
...|+.+++ ++|+++.++.|..+.+++++.|+++|+
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 224777777 799999999999999999999999885
No 90
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=4.5e-15 Score=123.72 Aligned_cols=111 Identities=20% Similarity=0.424 Sum_probs=89.3
Q ss_pred eeeecCCeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC---CeEEEEEECC--CCHhHHHhCC
Q 030784 59 VLCVRESRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG---RLRCFMVNTD--TDLTIAEDYE 133 (171)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~d--~~~~l~~~~~ 133 (171)
.....+.+.+|+.++|...+....+..+|+||++|||+|+++.|.++++++.... -|.+..|||. .|..+|++|+
T Consensus 34 Ly~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~ 113 (606)
T KOG1731|consen 34 LYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFS 113 (606)
T ss_pred ccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcC
Confidence 3444588999999999999988888999999999999999999999999998764 4888899984 5789999999
Q ss_pred CCcccEEEEEeCC----eEEEEEecCCCHHHHHHHHHHHh
Q 030784 134 IKAVPVVLLFKNG----EKRETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 134 i~~~Pt~~~~~~g----~~~~~~~G~~~~~~l~~~i~~~l 169 (171)
|.++|++.+|..+ ..-..+.|.....++.+.+.+.+
T Consensus 114 V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 114 VSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred CCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 9999999999422 11123455555666777666655
No 91
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.53 E-value=2.7e-13 Score=93.30 Aligned_cols=98 Identities=11% Similarity=0.158 Sum_probs=80.7
Q ss_pred hHHHHHhcCCCcEEEEEEcCCChhhHHHHHH-H--HHHHHHhcCCeEEEEEECC--CCHhHHHhCCCCcccEEEEEe--C
Q 030784 73 SWEKSILNSDTPVLVEFYASWCGPCRMVHRV-I--DEIAGEYAGRLRCFMVNTD--TDLTIAEDYEIKAVPVVLLFK--N 145 (171)
Q Consensus 73 ~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~-l--~~l~~~~~~~v~~~~vd~d--~~~~l~~~~~i~~~Pt~~~~~--~ 145 (171)
+..+...+.+|+++|+|+++||++|+.+... | .++.+.+..+..++.+|.+ +..++++.|++.++|+++++. +
T Consensus 8 ~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~ 87 (114)
T cd02958 8 DAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRT 87 (114)
T ss_pred HHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCcc
Confidence 3334455679999999999999999999864 3 5566666656777888876 457899999999999999994 7
Q ss_pred CeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 146 GEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 146 g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
|+.+.+..|..+.+.+...|++.+.
T Consensus 88 g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 88 GEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred CcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999988764
No 92
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.53 E-value=1.9e-13 Score=100.89 Aligned_cols=83 Identities=20% Similarity=0.357 Sum_probs=69.5
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC-------------HhHHHhCCC--CcccEEEEE-eCCeEE
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD-------------LTIAEDYEI--KAVPVVLLF-KNGEKR 149 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~-------------~~l~~~~~i--~~~Pt~~~~-~~g~~~ 149 (171)
||+||++||++|+++.|.+++++++|+ +.++.|+.|+. ..+.+.|++ .++|+.+++ ++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 778999999999999999999999985 66666766533 236678995 699998888 689886
Q ss_pred -EEEecCCCHHHHHHHHHHHhc
Q 030784 150 -ETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 150 -~~~~G~~~~~~l~~~i~~~l~ 170 (171)
..+.|..+.+++.+.|+++++
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHh
Confidence 579999999999999998875
No 93
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.53 E-value=1.3e-13 Score=90.91 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=64.9
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHH
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFY 161 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l 161 (171)
+...+..|+++||++|....+.+++++++++ ++.+..+|.++.++++++|||.++|++++ +|+.+. .|..+.+++
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~~e~ 86 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG--FGRMTLEEI 86 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE--eCCCCHHHH
Confidence 4557888899999999999999999999876 49999999999999999999999999975 888776 476665554
No 94
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.49 E-value=3.2e-13 Score=93.65 Aligned_cols=82 Identities=23% Similarity=0.492 Sum_probs=65.8
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEE---------------------CCCCHhHHHhCCCCcccE
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVN---------------------TDTDLTIAEDYEIKAVPV 139 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd---------------------~d~~~~l~~~~~i~~~Pt 139 (171)
.+++++|+||++||++|+.+.|.+.++++++. +..+.+| .|.+.+++++|+|.++|+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 96 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA 96 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence 46899999999999999999999999987743 2222222 145568999999999999
Q ss_pred EEEEeCCeEEEEEecCCCHHHHHHH
Q 030784 140 VLLFKNGEKRETVVGTMPKEFYIAA 164 (171)
Q Consensus 140 ~~~~~~g~~~~~~~G~~~~~~l~~~ 164 (171)
++++++|+++..+.|..+.+.+.+.
T Consensus 97 ~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 97 IVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEEcCCCeEEEEeccCCHHHHHhh
Confidence 9999655588899999999888654
No 95
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.3e-13 Score=113.48 Aligned_cols=106 Identities=24% Similarity=0.445 Sum_probs=96.8
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhc--CCeEEEEEECCCCHhHHHhCCCCcccEEEE
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYA--GRLRCFMVNTDTDLTIAEDYEIKAVPVVLL 142 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~ 142 (171)
.+.+++..+++..+.+.+..++|.||+|||++|+.+.|.+++++..+. ..+.+..+|++.+..++++++|+.+||+.+
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEE
Confidence 388899999999999999999999999999999999999999999885 579999999999999999999999999999
Q ss_pred EeCCeE-EEEEecCCCHHHHHHHHHHHhc
Q 030784 143 FKNGEK-RETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 143 ~~~g~~-~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
|.+|.. ...+.|.++.+.+..+++....
T Consensus 225 f~~~~~~~~~~~~~R~~~~i~~~v~~~~~ 253 (383)
T KOG0191|consen 225 FPPGEEDIYYYSGLRDSDSIVSFVEKKER 253 (383)
T ss_pred ecCCCcccccccccccHHHHHHHHHhhcC
Confidence 988888 7788899999999999987643
No 96
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.48 E-value=3.5e-13 Score=96.27 Aligned_cols=77 Identities=31% Similarity=0.638 Sum_probs=66.6
Q ss_pred CCCcEEEEEEcC-CChhhHHHHHHHHHHHHHhcC-CeEEEEEECCCC---------------------HhHHHhCCCC--
Q 030784 81 SDTPVLVEFYAS-WCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDTD---------------------LTIAEDYEIK-- 135 (171)
Q Consensus 81 ~~~~vvV~f~a~-wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~~---------------------~~l~~~~~i~-- 135 (171)
.++++||+||+. ||++|+...|.+.++.+.|.+ ++.++.|..+.+ ..+.++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 689999999999 999999999999999999765 488888877543 4688889988
Q ss_pred -------cccEEEEE-eCCeEEEEEecCCC
Q 030784 136 -------AVPVVLLF-KNGEKRETVVGTMP 157 (171)
Q Consensus 136 -------~~Pt~~~~-~~g~~~~~~~G~~~ 157 (171)
++|+++++ ++|+++....|..+
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99998777 79999999999877
No 97
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.48 E-value=3.8e-13 Score=90.81 Aligned_cols=74 Identities=35% Similarity=0.702 Sum_probs=66.4
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhc-CCeEEEEEECCCC-----------------------HhHHHhCCCCc
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYA-GRLRCFMVNTDTD-----------------------LTIAEDYEIKA 136 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~-~~v~~~~vd~d~~-----------------------~~l~~~~~i~~ 136 (171)
.+++++|+||++||++|+...+.+.++.++++ .++.++.|+.|.+ ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 37899999999999999999999999999986 3599999999886 78999999999
Q ss_pred ccEEEEE-eCCeEEEEEec
Q 030784 137 VPVVLLF-KNGEKRETVVG 154 (171)
Q Consensus 137 ~Pt~~~~-~~g~~~~~~~G 154 (171)
+|+++++ ++|+++.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9999998 58988888765
No 98
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.47 E-value=5.8e-13 Score=93.09 Aligned_cols=75 Identities=20% Similarity=0.363 Sum_probs=63.6
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECC---------------------------CCHhHHHhC
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTD---------------------------TDLTIAEDY 132 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d---------------------------~~~~l~~~~ 132 (171)
.++++||+||+.||++|+...|.|+++.+++++ ++.++.|+.+ ....+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 579999999999999999999999999999984 5778877541 223567789
Q ss_pred CCCcccEEEEE-eCCeEEEEEecC
Q 030784 133 EIKAVPVVLLF-KNGEKRETVVGT 155 (171)
Q Consensus 133 ~i~~~Pt~~~~-~~g~~~~~~~G~ 155 (171)
++.++|+++++ ++|+++..+.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999999999 589999988885
No 99
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.46 E-value=5.1e-13 Score=91.44 Aligned_cols=70 Identities=21% Similarity=0.402 Sum_probs=54.9
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC--------------------CHhHHHhCCCCcccEE
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT--------------------DLTIAEDYEIKAVPVV 140 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~--------------------~~~l~~~~~i~~~Pt~ 140 (171)
.++++||+||++||++|+.+.|.++++.+++.+++.++.+..+. +.++++.|++..+|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 47899999999999999999999999999887667766663211 1246667888889998
Q ss_pred EEEe-CCeEEE
Q 030784 141 LLFK-NGEKRE 150 (171)
Q Consensus 141 ~~~~-~g~~~~ 150 (171)
++++ +|+++.
T Consensus 100 ~vid~~G~v~~ 110 (114)
T cd02967 100 VLLDEAGVIAA 110 (114)
T ss_pred EEECCCCeEEe
Confidence 8884 777664
No 100
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.46 E-value=6.5e-13 Score=100.10 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=70.6
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC-------C----HhHHHhCCC--------------
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT-------D----LTIAEDYEI-------------- 134 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~-------~----~~l~~~~~i-------------- 134 (171)
.|+++||+||++||++|+...|.|+++.++|.+ ++.++.|++++ + ..+++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 579999999999999999999999999999975 48899998631 2 234444443
Q ss_pred ----------------------Cccc---EEEEE-eCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 135 ----------------------KAVP---VVLLF-KNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 135 ----------------------~~~P---t~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
..+| +.+++ ++|+++.++.|..+.+.+.+.|+++++
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1122 33344 899999999999899999999998876
No 101
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.42 E-value=1.2e-12 Score=97.12 Aligned_cols=80 Identities=13% Similarity=0.197 Sum_probs=64.0
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEE------EEEECCC-----------------------------C
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRC------FMVNTDT-----------------------------D 125 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~------~~vd~d~-----------------------------~ 125 (171)
.||+++|+|||.||++|++.+|.++++.++ ++.+ ..||.|+ +
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 499999999999999999999999999654 2444 5556553 2
Q ss_pred HhHHHhCCCCcccEE-EEE-eCCeEEEEEecCCCHHHHHH
Q 030784 126 LTIAEDYEIKAVPVV-LLF-KNGEKRETVVGTMPKEFYIA 163 (171)
Q Consensus 126 ~~l~~~~~i~~~Pt~-~~~-~~g~~~~~~~G~~~~~~l~~ 163 (171)
..++..||+.++|+. +++ ++|+++..+.|..+.+++.+
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 345678899999866 455 79999999999998887765
No 102
>PLN02412 probable glutathione peroxidase
Probab=99.40 E-value=3.2e-12 Score=93.75 Aligned_cols=91 Identities=16% Similarity=0.167 Sum_probs=72.9
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC-------C-HhH----HHhCC--------------
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT-------D-LTI----AEDYE-------------- 133 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~-------~-~~l----~~~~~-------------- 133 (171)
.++++||+||++||++|+...|.|+++.++|.+ ++.++.|+++. . .++ +++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 479999999999999999999999999999985 48899998642 1 121 22221
Q ss_pred --------------------CCcccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHhcC
Q 030784 134 --------------------IKAVPVVLLF-KNGEKRETVVGTMPKEFYIAAIERVLKS 171 (171)
Q Consensus 134 --------------------i~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~l~~ 171 (171)
|...|+.+++ ++|+++.++.|..+.+++...|+++|++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 3335777777 7999999999999999999999999874
No 103
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.40 E-value=4.9e-12 Score=94.57 Aligned_cols=85 Identities=21% Similarity=0.360 Sum_probs=63.7
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC--------------------CCHhHHHhCCCCcccEE
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD--------------------TDLTIAEDYEIKAVPVV 140 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d--------------------~~~~l~~~~~i~~~Pt~ 140 (171)
.+++++|+||++||++|+.+.|.+.++.++++.++ +.++.+ ...++++.|++..+|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~v--v~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDV--VMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcE--EEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 57899999999999999999999999988764334 444321 13477889999999988
Q ss_pred EEE-eCCeEEEEEecCCCHHHHHHHHHHH
Q 030784 141 LLF-KNGEKRETVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 141 ~~~-~~g~~~~~~~G~~~~~~l~~~i~~~ 168 (171)
+++ ++|+++... .....+++.+.++.+
T Consensus 151 ~lID~~G~I~~~g-~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGKIRAKG-LTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCeEEEcc-CCCCHHHHHHHHHHH
Confidence 777 588877642 234667777777654
No 104
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.36 E-value=4.5e-12 Score=88.80 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=58.4
Q ss_pred hhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHH---HHHHHHhcCCeEEEEEECCCCH-hHHHhCCCCcccEEEEE-eCC
Q 030784 72 DSWEKSILNSDTPVLVEFYASWCGPCRMVHRVI---DEIAGEYAGRLRCFMVNTDTDL-TIAEDYEIKAVPVVLLF-KNG 146 (171)
Q Consensus 72 ~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~d~~~-~l~~~~~i~~~Pt~~~~-~~g 146 (171)
++-.+...+.+|+++|+|+++||++|+.+...+ .++.+....+...+.++.|... .+. ..+ .++||++|+ .+|
T Consensus 13 eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g 90 (130)
T cd02960 13 EEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSL 90 (130)
T ss_pred HHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCC
Confidence 444455667899999999999999999999764 4445544434555666655221 111 234 689999999 688
Q ss_pred eEEEEEecCC
Q 030784 147 EKRETVVGTM 156 (171)
Q Consensus 147 ~~~~~~~G~~ 156 (171)
+++.++.|..
T Consensus 91 ~vi~~i~Gy~ 100 (130)
T cd02960 91 TVRADITGRY 100 (130)
T ss_pred CCcccccccc
Confidence 8888888765
No 105
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.34 E-value=6.4e-12 Score=84.29 Aligned_cols=88 Identities=39% Similarity=0.864 Sum_probs=75.8
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC-CCHhHHHhCC--CCcccEEEEEeCCeEEEEEec--CC
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD-TDLTIAEDYE--IKAVPVVLLFKNGEKRETVVG--TM 156 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d-~~~~l~~~~~--i~~~Pt~~~~~~g~~~~~~~G--~~ 156 (171)
+++++|.||++||++|+.+.|.+.++++++...+.++.+|.. .++++...|+ +..+|+++++.+|+.+....| ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 889999999999999999999999999999877899999996 8999999999 999999998888877666666 56
Q ss_pred CHHHHHHHHHHHh
Q 030784 157 PKEFYIAAIERVL 169 (171)
Q Consensus 157 ~~~~l~~~i~~~l 169 (171)
+.+.+......+.
T Consensus 112 ~~~~~~~~~~~~~ 124 (127)
T COG0526 112 PKEALIDALGELL 124 (127)
T ss_pred CHHHHHHHhcchh
Confidence 7777776655543
No 106
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.33 E-value=1.3e-11 Score=89.07 Aligned_cols=89 Identities=21% Similarity=0.218 Sum_probs=69.3
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEEC--------CCC---HhHHHh-CCC-------------
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNT--------DTD---LTIAED-YEI------------- 134 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~--------d~~---~~l~~~-~~i------------- 134 (171)
.||++||.||++||++|+...|.++++.++|++ ++.++.+++ |.. .+++++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 578999999999999999999999999999975 588998885 211 223322 221
Q ss_pred -------------CcccE-----EEEEeCCeEEEEEecCCCHHHHHHHHHHHh
Q 030784 135 -------------KAVPV-----VLLFKNGEKRETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 135 -------------~~~Pt-----~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l 169 (171)
..+|+ +++-++|+++.++.|..+.+.+...|++++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 13674 544489999999999999999999998764
No 107
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.33 E-value=6.3e-12 Score=105.88 Aligned_cols=102 Identities=17% Similarity=0.470 Sum_probs=81.2
Q ss_pred eEechh-hHHHHHhcC-CCcEEEEEEcCCChhhHHHHHHH---HHHHHHhcCCeEEEEEECCCC----HhHHHhCCCCcc
Q 030784 67 AVVTKD-SWEKSILNS-DTPVLVEFYASWCGPCRMVHRVI---DEIAGEYAGRLRCFMVNTDTD----LTIAEDYEIKAV 137 (171)
Q Consensus 67 ~~l~~~-~~~~~~~~~-~~~vvV~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~d~~----~~l~~~~~i~~~ 137 (171)
..++.. +.++.+.+. +|+|+|+|||+||-.||.+++.. .+.+.+..+ +...++|..++ .++.++|++-++
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 444444 666655443 45999999999999999999875 344445555 88999997654 567899999999
Q ss_pred cEEEEEe-CCeEEEEEecCCCHHHHHHHHHHHh
Q 030784 138 PVVLLFK-NGEKRETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 138 Pt~~~~~-~g~~~~~~~G~~~~~~l~~~i~~~l 169 (171)
|++++|. +|++.....|.++.+.+.+++++..
T Consensus 536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 9999995 8888777999999999999998864
No 108
>smart00594 UAS UAS domain.
Probab=99.33 E-value=3.6e-11 Score=83.76 Aligned_cols=96 Identities=10% Similarity=0.168 Sum_probs=73.8
Q ss_pred chhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHH---HHHHHHhcCCeEEEEEECC--CCHhHHHhCCCCcccEEEEE-
Q 030784 70 TKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVI---DEIAGEYAGRLRCFMVNTD--TDLTIAEDYEIKAVPVVLLF- 143 (171)
Q Consensus 70 ~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~d--~~~~l~~~~~i~~~Pt~~~~- 143 (171)
+-++..+...+.+|+++|+|+++||++|+.+...+ .++.+....+..+..+|.+ +..++++.|+++++|+++++
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~ 94 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVD 94 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEe
Confidence 34444455566789999999999999999988654 4555555556777777765 45679999999999999999
Q ss_pred eCC-----eEEEEEecCCCHHHHHHHH
Q 030784 144 KNG-----EKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 144 ~~g-----~~~~~~~G~~~~~~l~~~i 165 (171)
.+| +.+.++.|..+.+++...|
T Consensus 95 ~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 95 PRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred cCCCceeEEEeccccCCCCHHHHHHhh
Confidence 344 3577889999999888765
No 109
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.33 E-value=3.4e-11 Score=88.37 Aligned_cols=90 Identities=18% Similarity=0.324 Sum_probs=72.7
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhc-CCeEEEEEECCC-----------------------------CHhHHH
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYA-GRLRCFMVNTDT-----------------------------DLTIAE 130 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~-~~v~~~~vd~d~-----------------------------~~~l~~ 130 (171)
.++++||+||++||+.|....+.|.++.++++ .++.++.|+.|. +..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 57899999999999999999999999999997 368899998753 124677
Q ss_pred hCCCCcccEEEEE-eCCeEEEEEe---------cCCCHHHHHHHHHHHhc
Q 030784 131 DYEIKAVPVVLLF-KNGEKRETVV---------GTMPKEFYIAAIERVLK 170 (171)
Q Consensus 131 ~~~i~~~Pt~~~~-~~g~~~~~~~---------G~~~~~~l~~~i~~~l~ 170 (171)
.|++..+|+++++ ++|+++.... +..+.+.+.+.|+.++.
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 8899999999988 5888776531 22356778999988875
No 110
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.26 E-value=2.9e-11 Score=87.24 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=63.3
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC-------C----HhHHHh-CC--------------
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT-------D----LTIAED-YE-------------- 133 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~-------~----~~l~~~-~~-------------- 133 (171)
.+++|||+||++||+ |+...|.|+++.+++.+ ++.++.|+.+. . .+++++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 489999999999999 99999999999999974 58888887642 1 233332 32
Q ss_pred ---------CCccc-----------EEEEE-eCCeEEEEEecCCCHHHHHHH
Q 030784 134 ---------IKAVP-----------VVLLF-KNGEKRETVVGTMPKEFYIAA 164 (171)
Q Consensus 134 ---------i~~~P-----------t~~~~-~~g~~~~~~~G~~~~~~l~~~ 164 (171)
+..+| +.+++ ++|+++.++.|..+.+.+.+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 13456 45555 799999999999988877654
No 111
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.25 E-value=2.1e-11 Score=79.05 Aligned_cols=69 Identities=23% Similarity=0.458 Sum_probs=52.9
Q ss_pred HHHHhcCCCcEEEEEEcCCChhhHHHHHHH---HHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEe
Q 030784 75 EKSILNSDTPVLVEFYASWCGPCRMVHRVI---DEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK 144 (171)
Q Consensus 75 ~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~ 144 (171)
...+.+.+++++|+|+++||++|+.+...+ .++.+.+..+..++.+|.++.......++ +++|+++++.
T Consensus 10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 344566799999999999999999999877 55555455668899999987765443222 6699999874
No 112
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.18 E-value=2.4e-10 Score=80.79 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=69.5
Q ss_pred CCCcEEEEEE-cCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC---------------------CHhHHHhCCCCcc
Q 030784 81 SDTPVLVEFY-ASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT---------------------DLTIAEDYEIKAV 137 (171)
Q Consensus 81 ~~~~vvV~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~---------------------~~~l~~~~~i~~~ 137 (171)
.+++++|+|| +.||+.|....+.+.++.+++.+ ++.++.|..|. +..+++.||+...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 3889999999 58999999999999999988863 47788877643 3467778899888
Q ss_pred ---------cEEEEE-eCCeEEEEEecCCCHHHHHHHH
Q 030784 138 ---------PVVLLF-KNGEKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 138 ---------Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i 165 (171)
|+++++ ++|+++..+.|....+.+.+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 888888 4899999999998777776654
No 113
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.16 E-value=3.3e-10 Score=84.27 Aligned_cols=90 Identities=18% Similarity=0.239 Sum_probs=67.8
Q ss_pred CCCcE-EEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC-------C-H---hH-HHhC--------------
Q 030784 81 SDTPV-LVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT-------D-L---TI-AEDY-------------- 132 (171)
Q Consensus 81 ~~~~v-vV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~-------~-~---~l-~~~~-------------- 132 (171)
.|+++ |+.+||+||++|+...|.|+++.++|.+ ++.++.|+++. . . .+ .+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 46754 4566999999999999999999999975 48888987631 0 1 11 1121
Q ss_pred ----------------------CCCcccE----EEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 133 ----------------------EIKAVPV----VLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 133 ----------------------~i~~~Pt----~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
++.++|+ +++-++|+++.++.|..+.+.+.+.|+++++
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 3446784 4444899999999999999999999999875
No 114
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.15 E-value=3.2e-10 Score=88.78 Aligned_cols=103 Identities=19% Similarity=0.391 Sum_probs=76.4
Q ss_pred CeeEec-hhhHHHHHhcC--CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEE
Q 030784 65 SRAVVT-KDSWEKSILNS--DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVL 141 (171)
Q Consensus 65 ~~~~l~-~~~~~~~~~~~--~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~ 141 (171)
.+.+++ .++|.+.+.+. +..|||+||.+.++.|..+...|..|+.+|+. +.|++|.....+ +..+|.+..+||++
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LPtll 203 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLPTLL 203 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-SEEE
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCCEEE
Confidence 456775 46787776544 45899999999999999999999999999997 999999987765 78899999999999
Q ss_pred EEeCCeEEEEEecCC---CHHHHHHHHHHHh
Q 030784 142 LFKNGEKRETVVGTM---PKEFYIAAIERVL 169 (171)
Q Consensus 142 ~~~~g~~~~~~~G~~---~~~~l~~~i~~~l 169 (171)
+|++|..++.+.|.. ..+.....|+.+|
T Consensus 204 vYk~G~l~~~~V~l~~~~g~df~~~dlE~~L 234 (265)
T PF02114_consen 204 VYKNGDLIGNFVGLTDLLGDDFFTEDLEAFL 234 (265)
T ss_dssp EEETTEEEEEECTGGGCT-TT--HHHHHHHH
T ss_pred EEECCEEEEeEEehHHhcCCCCCHHHHHHHH
Confidence 999999999987643 3333344455544
No 115
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=7e-11 Score=88.32 Aligned_cols=92 Identities=22% Similarity=0.334 Sum_probs=76.5
Q ss_pred ecCCeeEechhh-HHHHHhc-CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCCCHhHHHhCCCC---
Q 030784 62 VRESRAVVTKDS-WEKSILN-SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDTDLTIAEDYEIK--- 135 (171)
Q Consensus 62 ~~~~~~~l~~~~-~~~~~~~-~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~i~--- 135 (171)
.++.++.+++.+ +++++.. ..+.++|.|++.|.+.|+...|.+.+|..+|.. .+.|++||+..-++.+.+|+|.
T Consensus 122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~ 201 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSP 201 (265)
T ss_pred CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCc
Confidence 356677775444 4444432 356899999999999999999999999999974 6999999999999999999985
Q ss_pred ---cccEEEEEeCCeEEEEEe
Q 030784 136 ---AVPVVLLFKNGEKRETVV 153 (171)
Q Consensus 136 ---~~Pt~~~~~~g~~~~~~~ 153 (171)
.+||+++|++|+++.+..
T Consensus 202 ~srQLPT~ilFq~gkE~~RrP 222 (265)
T KOG0914|consen 202 GSRQLPTYILFQKGKEVSRRP 222 (265)
T ss_pred ccccCCeEEEEccchhhhcCc
Confidence 789999999999988654
No 116
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.12 E-value=4.5e-10 Score=78.97 Aligned_cols=96 Identities=17% Similarity=0.352 Sum_probs=58.3
Q ss_pred EechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhC---CCCcccEEEEEe
Q 030784 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDY---EIKAVPVVLLFK 144 (171)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~---~i~~~Pt~~~~~ 144 (171)
.++++..........+..++.|..+|||.|++..|.+.++++..+ ++.+-.+..|+++++.++| |.+.+|++++++
T Consensus 27 ~l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d 105 (129)
T PF14595_consen 27 QLSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLD 105 (129)
T ss_dssp H--HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEc
Confidence 344444443333345678888999999999999999999999976 4888888889998887765 688999999994
Q ss_pred -CCeEEEEEecCCCHHHHHHHHH
Q 030784 145 -NGEKRETVVGTMPKEFYIAAIE 166 (171)
Q Consensus 145 -~g~~~~~~~G~~~~~~l~~~i~ 166 (171)
+|+++.++.. ++.. +.+.++
T Consensus 106 ~~~~~lg~wge-rP~~-~~~~~~ 126 (129)
T PF14595_consen 106 KDGKELGRWGE-RPKE-VQELVD 126 (129)
T ss_dssp TT--EEEEEES-S-HH-HH----
T ss_pred CCCCEeEEEcC-CCHH-Hhhccc
Confidence 6777776544 3443 344443
No 117
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.09 E-value=1.3e-09 Score=68.20 Aligned_cols=68 Identities=16% Similarity=0.403 Sum_probs=52.5
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHh----HHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHH
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLT----IAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFY 161 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~----l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l 161 (171)
+..|+++||++|+++.+.|++. ++.+..+|++++++ +.+.+++.++|++++ +|+. +.|. +.+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~--~~~~---~~g~-~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI--GHKI---IVGF-DPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE--CCEE---EeeC-CHHHH
Confidence 5679999999999998887652 37888999987754 556799999999987 4654 5664 66667
Q ss_pred HHHH
Q 030784 162 IAAI 165 (171)
Q Consensus 162 ~~~i 165 (171)
.++|
T Consensus 70 ~~~i 73 (74)
T TIGR02196 70 DQLL 73 (74)
T ss_pred HHHh
Confidence 6665
No 118
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2e-09 Score=76.66 Aligned_cols=92 Identities=21% Similarity=0.435 Sum_probs=75.9
Q ss_pred HHHhcCCCcEEEEEEcCCChhhHHHHHHH---HHHHHHhcCCeEEEEEECCC----------------CHhHHHhCCCCc
Q 030784 76 KSILNSDTPVLVEFYASWCGPCRMVHRVI---DEIAGEYAGRLRCFMVNTDT----------------DLTIAEDYEIKA 136 (171)
Q Consensus 76 ~~~~~~~~~vvV~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~d~----------------~~~l~~~~~i~~ 136 (171)
+.+...++..++.|-...|.+|.++...+ .++++-+.+.+.++.++... ..+|++.|+|++
T Consensus 36 ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrs 115 (182)
T COG2143 36 KSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRS 115 (182)
T ss_pred HhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcccc
Confidence 34455689999999999999999999766 56666666668888887632 258999999999
Q ss_pred ccEEEEE-eCCeEEEEEecCCCHHHHHHHHHH
Q 030784 137 VPVVLLF-KNGEKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 137 ~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~ 167 (171)
.|++++| ++|+.+....|+++.+++...++-
T Consensus 116 tPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 116 TPTFVFFDKTGKTILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred CceEEEEcCCCCEEEecCCCCCHHHHHHHHHH
Confidence 9999999 689999999999999998876654
No 119
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.08 E-value=3.1e-10 Score=81.33 Aligned_cols=70 Identities=26% Similarity=0.600 Sum_probs=60.3
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCC---eEEEEEECCCC-------------------------HhHHHhC
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGR---LRCFMVNTDTD-------------------------LTIAEDY 132 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~d~~-------------------------~~l~~~~ 132 (171)
.||.|.++|-|.||++||.+-|++.++.++..+. +.++.|+.|.+ +++.++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4799999999999999999999999999988765 88888888754 3688899
Q ss_pred CCCcccEEEEE-eCCeEEE
Q 030784 133 EIKAVPVVLLF-KNGEKRE 150 (171)
Q Consensus 133 ~i~~~Pt~~~~-~~g~~~~ 150 (171)
+|.++|++++. .+|..+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 99999999988 5786665
No 120
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.07 E-value=2.5e-09 Score=78.73 Aligned_cols=88 Identities=17% Similarity=0.264 Sum_probs=67.3
Q ss_pred CCCcEEEEEE-cCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCCC----------------------------HhHHH
Q 030784 81 SDTPVLVEFY-ASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDTD----------------------------LTIAE 130 (171)
Q Consensus 81 ~~~~vvV~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~~----------------------------~~l~~ 130 (171)
.++++||+|| +.||++|....+.|.++++++.+ ++.++.|+.|.. ..+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4789999999 89999999999999999999864 477777776532 24566
Q ss_pred hCCCC------cccEEEEE-eCCeEEEEEecCC----CHHHHHHHHHHH
Q 030784 131 DYEIK------AVPVVLLF-KNGEKRETVVGTM----PKEFYIAAIERV 168 (171)
Q Consensus 131 ~~~i~------~~Pt~~~~-~~g~~~~~~~G~~----~~~~l~~~i~~~ 168 (171)
.||+. ..|+++++ ++|+++..+.+.. +.+.+.+.|+++
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 77876 56788888 5999988885543 456677777654
No 121
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.07 E-value=2.5e-09 Score=81.50 Aligned_cols=82 Identities=23% Similarity=0.318 Sum_probs=69.3
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC-----------CCHhHHHhCCCCcccEEEEEe-CC-eE
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD-----------TDLTIAEDYEIKAVPVVLLFK-NG-EK 148 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d-----------~~~~l~~~~~i~~~Pt~~~~~-~g-~~ 148 (171)
++.-+++||.++|++|+.+.|.+..++++|+ +.+..|+.| .+..+++++||..+|+++++. ++ +.
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 6777999999999999999999999999995 777778777 357899999999999999884 44 45
Q ss_pred EEEEecCCCHHHHHHHH
Q 030784 149 RETVVGTMPKEFYIAAI 165 (171)
Q Consensus 149 ~~~~~G~~~~~~l~~~i 165 (171)
.....|.++.++|.+.|
T Consensus 198 ~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 198 YPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEeeecCCHHHHHHhh
Confidence 55668999999887654
No 122
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.05 E-value=3.3e-09 Score=67.75 Aligned_cols=73 Identities=23% Similarity=0.442 Sum_probs=57.3
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEEEec-CCCHHHHHHHH
Q 030784 87 VEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVG-TMPKEFYIAAI 165 (171)
Q Consensus 87 V~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G-~~~~~~l~~~i 165 (171)
|.+++++|++|..+...++++..+++ +.+-.+|..+.+++ ++|||..+|++++ ||+.+ +.| ..+.+++..+|
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~--~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVV--FVGRVPSKEELKELL 75 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEE--EESS--HHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEE--EEecCCCHHHHHHHh
Confidence 34478889999999999999999984 77777777666666 9999999999977 88755 678 66778888877
Q ss_pred H
Q 030784 166 E 166 (171)
Q Consensus 166 ~ 166 (171)
+
T Consensus 76 ~ 76 (76)
T PF13192_consen 76 E 76 (76)
T ss_dssp H
T ss_pred C
Confidence 5
No 123
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.05 E-value=1.9e-09 Score=74.44 Aligned_cols=70 Identities=27% Similarity=0.596 Sum_probs=59.9
Q ss_pred CCCcEEEEEEcC-CChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC---------------------CHhHHHhCCCC--
Q 030784 81 SDTPVLVEFYAS-WCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT---------------------DLTIAEDYEIK-- 135 (171)
Q Consensus 81 ~~~~vvV~f~a~-wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~---------------------~~~l~~~~~i~-- 135 (171)
.++++||.||+. ||+.|+...+.|.++.+++++ ++.++.|+.|. +.++++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 579999999999 999999999999999999884 59999998853 34688889998
Q ss_pred ----cccEEEEE-eCCeEEE
Q 030784 136 ----AVPVVLLF-KNGEKRE 150 (171)
Q Consensus 136 ----~~Pt~~~~-~~g~~~~ 150 (171)
.+|+++++ ++|++++
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 99999888 5777654
No 124
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.05 E-value=3.8e-09 Score=76.08 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=66.6
Q ss_pred CCCcEEEEEEcC-CChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC---------------------CHhHHHhCCCCcc
Q 030784 81 SDTPVLVEFYAS-WCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT---------------------DLTIAEDYEIKAV 137 (171)
Q Consensus 81 ~~~~vvV~f~a~-wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~---------------------~~~l~~~~~i~~~ 137 (171)
.++++||+||+. ||+.|....+.+.++.+++.+ ++.++.|+.|. ...+++.||+...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 478999999976 688899999999999998864 48888887743 3457778888654
Q ss_pred ------------cEEEEE-eCCeEEEEEecCCCHHHHHHHHHH
Q 030784 138 ------------PVVLLF-KNGEKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 138 ------------Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~ 167 (171)
|+.+++ ++|+++..+.|....+.+.+.++.
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~~ 151 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLDY 151 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHHH
Confidence 565666 699999999998777765554443
No 125
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.04 E-value=2.3e-09 Score=78.56 Aligned_cols=73 Identities=15% Similarity=0.284 Sum_probs=59.7
Q ss_pred CCCcEEEEEEcCC-ChhhHHHHHHHHHHHHHhcCCeEEEEEECCC-----------------------CHhHHHhCCCCc
Q 030784 81 SDTPVLVEFYASW-CGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT-----------------------DLTIAEDYEIKA 136 (171)
Q Consensus 81 ~~~~vvV~f~a~w-C~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~-----------------------~~~l~~~~~i~~ 136 (171)
.|+++||+||+.| |++|+...+.|.++.+++. ++.++.|+.|. ...+++.||+..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 4789999999999 9999999999999999985 58888887752 236788899887
Q ss_pred cc---------EEEEE-eCCeEEEEEec
Q 030784 137 VP---------VVLLF-KNGEKRETVVG 154 (171)
Q Consensus 137 ~P---------t~~~~-~~g~~~~~~~G 154 (171)
.| +.+++ ++|+++....+
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEEEEC
Confidence 77 77777 59998887754
No 126
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.03 E-value=2.3e-09 Score=67.96 Aligned_cols=70 Identities=21% Similarity=0.386 Sum_probs=50.7
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHh-----CCCCcccEEEEEeCCeEEEEEecCCCHHH
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAED-----YEIKAVPVVLLFKNGEKRETVVGTMPKEF 160 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~-----~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~ 160 (171)
++.||++||++|+++++.|+++. +.+..+|+++++..... +++..+|++ ++.+|+.+. ..+..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCHHH
Confidence 67899999999999999886653 44567888888766655 489999997 467775543 345555
Q ss_pred HHHHHH
Q 030784 161 YIAAIE 166 (171)
Q Consensus 161 l~~~i~ 166 (171)
+.+.|+
T Consensus 71 ~~~~l~ 76 (77)
T TIGR02200 71 VKAKLQ 76 (77)
T ss_pred HHHHhh
Confidence 555543
No 127
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.02 E-value=2.1e-09 Score=64.18 Aligned_cols=60 Identities=30% Similarity=0.653 Sum_probs=52.1
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHH---hCCCCcccEEEEEeCC
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAE---DYEIKAVPVVLLFKNG 146 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~---~~~i~~~Pt~~~~~~g 146 (171)
++.||+.||++|+++.+.+.++ +....++.+..++++......+ .+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999999 4445569999999998877665 8999999999998776
No 128
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.01 E-value=3.7e-09 Score=75.13 Aligned_cols=74 Identities=11% Similarity=0.203 Sum_probs=60.3
Q ss_pred CCCcEEEEEEcCC-ChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC-----------------------HhHHHhCCCCc
Q 030784 81 SDTPVLVEFYASW-CGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD-----------------------LTIAEDYEIKA 136 (171)
Q Consensus 81 ~~~~vvV~f~a~w-C~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~-----------------------~~l~~~~~i~~ 136 (171)
.++++||+||+.| |++|+...+.|.++.+++. ++.++.|+.|.. ..+++.||+..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 4789999999998 6999999999999999986 488888887521 35667788753
Q ss_pred ------ccEEEEE-eCCeEEEEEecC
Q 030784 137 ------VPVVLLF-KNGEKRETVVGT 155 (171)
Q Consensus 137 ------~Pt~~~~-~~g~~~~~~~G~ 155 (171)
.|+.+++ ++|+++....|.
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECC
Confidence 6887777 599999988765
No 129
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.00 E-value=1.9e-09 Score=79.37 Aligned_cols=89 Identities=25% Similarity=0.412 Sum_probs=78.7
Q ss_pred eeEec-hhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEe
Q 030784 66 RAVVT-KDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK 144 (171)
Q Consensus 66 ~~~l~-~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~ 144 (171)
..++. +.+|.+....+.+ ||+.||-+.-..|+-|...|+.|++.+-+ ..|++||..+.|-|+.+++|+.+|++++|+
T Consensus 68 y~ev~~Ekdf~~~~~kS~k-VVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~v~l~k 145 (211)
T KOG1672|consen 68 YEEVASEKDFFEEVKKSEK-VVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPTVALFK 145 (211)
T ss_pred EEEeccHHHHHHHhhcCce-EEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeeeEEEEE
Confidence 34554 6778777755554 78999999999999999999999999886 999999999999999999999999999999
Q ss_pred CCeEEEEEecCC
Q 030784 145 NGEKRETVVGTM 156 (171)
Q Consensus 145 ~g~~~~~~~G~~ 156 (171)
+|+.++++.|..
T Consensus 146 ~g~~~D~iVGF~ 157 (211)
T KOG1672|consen 146 NGKTVDYVVGFT 157 (211)
T ss_pred cCEEEEEEeeHh
Confidence 999999998853
No 130
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.00 E-value=7.5e-09 Score=77.23 Aligned_cols=86 Identities=14% Similarity=0.173 Sum_probs=64.6
Q ss_pred CCCcEEEEEE-cCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC-------------------------CHhHHHhCC
Q 030784 81 SDTPVLVEFY-ASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT-------------------------DLTIAEDYE 133 (171)
Q Consensus 81 ~~~~vvV~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~-------------------------~~~l~~~~~ 133 (171)
.|+++||+|| +.||+.|....+.|.++.+++.+ ++.++.|+.|. +..+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 4789999999 99999999999999999988853 47777777653 236778889
Q ss_pred CC------cccEEEEE-eCCeEEEEEecC----CCHHHHHHHHH
Q 030784 134 IK------AVPVVLLF-KNGEKRETVVGT----MPKEFYIAAIE 166 (171)
Q Consensus 134 i~------~~Pt~~~~-~~g~~~~~~~G~----~~~~~l~~~i~ 166 (171)
+. ..|+.+++ ++|+++....+. ...+++.+.|+
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 86 46877777 689988876442 24555555554
No 131
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.97 E-value=9.8e-09 Score=73.01 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=54.7
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC---------------------CHhHHHhCCCC----
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT---------------------DLTIAEDYEIK---- 135 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~---------------------~~~l~~~~~i~---- 135 (171)
+..+|++|++.||++|+...+.|.++.+++.+ ++.++.|+.|. +..+.+.||+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~~ 103 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSLP 103 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecCc
Confidence 34455555699999999999999999999863 58888888753 34567777874
Q ss_pred -------------------------cccEEEEE-eCCeEEEEEec
Q 030784 136 -------------------------AVPVVLLF-KNGEKRETVVG 154 (171)
Q Consensus 136 -------------------------~~Pt~~~~-~~g~~~~~~~G 154 (171)
.+|..+++ ++|+++..+.|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 104 WSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 68888777 47777766554
No 132
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.97 E-value=3.9e-09 Score=78.47 Aligned_cols=90 Identities=19% Similarity=0.256 Sum_probs=67.1
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC--------C---HhHHH-hCCCC------------
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT--------D---LTIAE-DYEIK------------ 135 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~--------~---~~l~~-~~~i~------------ 135 (171)
.|+++||.|||+||++|+ ..+.|+++.++|++ ++.++.+.+++ . .++++ +|++.
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~Fpv~~k~dvnG~ 102 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEVNGE 102 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCCceeEEEEccCCC
Confidence 479999999999999997 58899999999975 58899998742 1 34454 56542
Q ss_pred -----------ccc--------------------------------EEEEEeCCeEEEEEecCCCHHH--HHHHHHHHhc
Q 030784 136 -----------AVP--------------------------------VVLLFKNGEKRETVVGTMPKEF--YIAAIERVLK 170 (171)
Q Consensus 136 -----------~~P--------------------------------t~~~~~~g~~~~~~~G~~~~~~--l~~~i~~~l~ 170 (171)
..| .|++-++|+.+.++.......+ |.+.|+++|.
T Consensus 103 ~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~~~~~~p~~~~i~~~i~~~l~ 182 (183)
T PRK10606 103 GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDMTPEDPIVMESIKLALA 182 (183)
T ss_pred CCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEECCCCCCCHHHHHHHHHHHhc
Confidence 233 2444489999999987655544 8999998875
Q ss_pred C
Q 030784 171 S 171 (171)
Q Consensus 171 ~ 171 (171)
+
T Consensus 183 ~ 183 (183)
T PRK10606 183 K 183 (183)
T ss_pred C
Confidence 3
No 133
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.95 E-value=1.7e-10 Score=87.09 Aligned_cols=99 Identities=18% Similarity=0.392 Sum_probs=86.6
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCCCHhHHHhCCCCcccEEEEE
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDTDLTIAEDYEIKAVPVVLLF 143 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~ 143 (171)
....+++++|...+ ..-+++.|+++||+.|+...+.|+.++.--.| .|.+.+||+..++.|.-+|-+..+|||+..
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV 101 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEe
Confidence 66788999997765 34578999999999999999999998875443 599999999999999999999999999999
Q ss_pred eCCeEEEEEecCCCHHHHHHHHHH
Q 030784 144 KNGEKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 144 ~~g~~~~~~~G~~~~~~l~~~i~~ 167 (171)
++| +..+|.|.++.++++.+++.
T Consensus 102 kDG-eFrrysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 102 KDG-EFRRYSGARDKNDFISFEEH 124 (248)
T ss_pred ecc-ccccccCcccchhHHHHHHh
Confidence 999 45679999999999998875
No 134
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.95 E-value=5.4e-09 Score=75.86 Aligned_cols=84 Identities=15% Similarity=0.296 Sum_probs=57.3
Q ss_pred eEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHH-H--HHHHHHhcCCeEEEEEECCCCHhHHHhC--------CCC
Q 030784 67 AVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRV-I--DEIAGEYAGRLRCFMVNTDTDLTIAEDY--------EIK 135 (171)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~-l--~~l~~~~~~~v~~~~vd~d~~~~l~~~~--------~i~ 135 (171)
....++.+ +...+.+|+++|.++.+||+.|+.|... + .++++.++....-++||.++.+++.+.| |..
T Consensus 23 ~~w~~ea~-~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~g 101 (163)
T PF03190_consen 23 QPWGEEAL-EKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSG 101 (163)
T ss_dssp B-SSHHHH-HHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS--
T ss_pred ccCCHHHH-HHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCC
Confidence 34455666 4556789999999999999999998853 3 5566666656778999999999999988 889
Q ss_pred cccEEEEE-eCCeEEEE
Q 030784 136 AVPVVLLF-KNGEKRET 151 (171)
Q Consensus 136 ~~Pt~~~~-~~g~~~~~ 151 (171)
++|+.++. .+|+.+..
T Consensus 102 GwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 102 GWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp -SSEEEEE-TTS-EEEE
T ss_pred CCCceEEECCCCCeeee
Confidence 99999888 58877664
No 135
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.95 E-value=1.4e-08 Score=72.49 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=58.5
Q ss_pred CcEEEEEE-cCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECC---------------------CC--HhHHHhCCCCc-
Q 030784 83 TPVLVEFY-ASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTD---------------------TD--LTIAEDYEIKA- 136 (171)
Q Consensus 83 ~~vvV~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d---------------------~~--~~l~~~~~i~~- 136 (171)
++++|.|| +.||+.|....+.+.++.+++.+ ++.++.|+.| .. ..+++.||+..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 78888887 99999999999999999999863 5888887764 23 56778888873
Q ss_pred ---cc--EEEEE-eCCeEEEEEecCC
Q 030784 137 ---VP--VVLLF-KNGEKRETVVGTM 156 (171)
Q Consensus 137 ---~P--t~~~~-~~g~~~~~~~G~~ 156 (171)
.| +++++ ++|+++..+.|..
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCC
Confidence 33 66677 5899999888865
No 136
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.93 E-value=9.6e-09 Score=70.99 Aligned_cols=77 Identities=23% Similarity=0.516 Sum_probs=53.2
Q ss_pred hhHHHHHhc---CCCcEEEEEEcC-------CChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC-------HhHHH--hC
Q 030784 72 DSWEKSILN---SDTPVLVEFYAS-------WCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD-------LTIAE--DY 132 (171)
Q Consensus 72 ~~~~~~~~~---~~~~vvV~f~a~-------wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~-------~~l~~--~~ 132 (171)
++|.+.+.. .+++++|+|+++ ||+.|+...|.+++..+..+++..++.|.+... ..+-+ ++
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~ 85 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDL 85 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEccee
Confidence 556666643 568999999864 999999999999999888777788888887422 23444 59
Q ss_pred CCCcccEEEEEeCCeE
Q 030784 133 EIKAVPVVLLFKNGEK 148 (171)
Q Consensus 133 ~i~~~Pt~~~~~~g~~ 148 (171)
+++++||++-+..++.
T Consensus 86 ~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 86 KLKGIPTLIRWETGER 101 (119)
T ss_dssp ---SSSEEEECTSS-E
T ss_pred eeeecceEEEECCCCc
Confidence 9999999999977733
No 137
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.92 E-value=5.1e-09 Score=67.52 Aligned_cols=60 Identities=17% Similarity=0.337 Sum_probs=47.1
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCH-----hHHHhCCCCcccEEEEEeCCeEE
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL-----TIAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~-----~l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
|+.|+++||++|+++.+.|+++. .++...++.+|.+++. .+.+.+|+..+|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 57899999999999999999987 3344677888876553 3677789999999865 77653
No 138
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.92 E-value=3.3e-08 Score=76.96 Aligned_cols=86 Identities=20% Similarity=0.243 Sum_probs=72.3
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC-----------HhHHHhCCCCcccEEEEEe-C-CeE
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD-----------LTIAEDYEIKAVPVVLLFK-N-GEK 148 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~-----------~~l~~~~~i~~~Pt~~~~~-~-g~~ 148 (171)
++.-+|+||...|++|+.+.|.++.++++|+ +.+..|++|.. ..+++++||..+|+++++. + ++.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 5678999999999999999999999999997 77777877755 5689999999999998883 4 445
Q ss_pred EEEEecCCCHHHHHHHHHHHh
Q 030784 149 RETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 149 ~~~~~G~~~~~~l~~~i~~~l 169 (171)
.-...|.++.++|.+.|..++
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHH
Confidence 555689999999998877664
No 139
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.92 E-value=4e-08 Score=67.87 Aligned_cols=94 Identities=12% Similarity=0.090 Sum_probs=73.4
Q ss_pred HHHHHhcCCCcEEEEEEcC----CChhhHHHH--HHHHHHHHHhcCCeEEEEEECCCC--HhHHHhCCCCcccEEEEE--
Q 030784 74 WEKSILNSDTPVLVEFYAS----WCGPCRMVH--RVIDEIAGEYAGRLRCFMVNTDTD--LTIAEDYEIKAVPVVLLF-- 143 (171)
Q Consensus 74 ~~~~~~~~~~~vvV~f~a~----wC~~C~~~~--~~l~~l~~~~~~~v~~~~vd~d~~--~~l~~~~~i~~~Pt~~~~-- 143 (171)
..+...+..|.++|++|++ ||..|+... |.+.++. +.+..+...|++.. .+++..+++..+|++.++
T Consensus 9 Al~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~l---n~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~ 85 (116)
T cd02991 9 ALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYI---NTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIML 85 (116)
T ss_pred HHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHH---HcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEe
Confidence 3344566799999999999 899997765 3444444 34577888887644 678999999999999988
Q ss_pred e--CCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 144 K--NGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 144 ~--~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
+ +.+.+.+..|..+.+++...|+.+++
T Consensus 86 ~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 86 KDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred cCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 2 34568899999999999999998775
No 140
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.89 E-value=1.7e-08 Score=77.86 Aligned_cols=81 Identities=14% Similarity=0.290 Sum_probs=63.2
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEEC--------------------------------------
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNT-------------------------------------- 122 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~-------------------------------------- 122 (171)
.++.+++.|..+.||+|+++++.+.++.+. ++.+..+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 357889999999999999999998887542 244444322
Q ss_pred ------CCCHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHHH
Q 030784 123 ------DTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 123 ------d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~ 168 (171)
+++.++++++||+++|+++ +.+|+.+ .|..+.+++.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 2335788999999999998 6788654 8999999999999865
No 141
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.88 E-value=2.1e-08 Score=70.64 Aligned_cols=77 Identities=22% Similarity=0.374 Sum_probs=61.7
Q ss_pred CCCcEEEEEE-cCCChhhHHHHHHHHHHHHHhc-CCeEEEEEECCC----------------------CHhHHHhCCCCc
Q 030784 81 SDTPVLVEFY-ASWCGPCRMVHRVIDEIAGEYA-GRLRCFMVNTDT----------------------DLTIAEDYEIKA 136 (171)
Q Consensus 81 ~~~~vvV~f~-a~wC~~C~~~~~~l~~l~~~~~-~~v~~~~vd~d~----------------------~~~l~~~~~i~~ 136 (171)
.+++++|+|| +.||+.|....+.+.++.+++. .++.++.|..|. ...+++.||+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 5889999999 7899999999999999999884 357788887742 235777788876
Q ss_pred cc---------EEEEE-eCCeEEEEEecCCC
Q 030784 137 VP---------VVLLF-KNGEKRETVVGTMP 157 (171)
Q Consensus 137 ~P---------t~~~~-~~g~~~~~~~G~~~ 157 (171)
.| +++++ ++|+++..+.|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 66 66666 57999999888765
No 142
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=9.4e-08 Score=65.69 Aligned_cols=99 Identities=22% Similarity=0.389 Sum_probs=80.5
Q ss_pred chhhHHHHHhc-CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeE
Q 030784 70 TKDSWEKSILN-SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEK 148 (171)
Q Consensus 70 ~~~~~~~~~~~-~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~ 148 (171)
+..+.++.+.. ..+.|||-|..+|-+.|..+...|.++++...+-+.++.||.|+.+++.+-|++...|++++|-+++.
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 34556666644 48899999999999999999999999999999888899999999999999999999999999877666
Q ss_pred EEEEecCC----------CHHHHHHHHHHH
Q 030784 149 RETVVGTM----------PKEFYIAAIERV 168 (171)
Q Consensus 149 ~~~~~G~~----------~~~~l~~~i~~~ 168 (171)
+.--.|.. +++++++.++.+
T Consensus 90 mkiD~gtgdn~Kin~~~~~kq~~Idiie~i 119 (142)
T KOG3414|consen 90 MKIDLGTGDNNKINFAFEDKQEFIDIIETI 119 (142)
T ss_pred EEEeeCCCCCceEEEEeccHHHHHHHHHHH
Confidence 55333322 456677777654
No 143
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.88 E-value=3.6e-08 Score=74.48 Aligned_cols=89 Identities=15% Similarity=0.154 Sum_probs=66.0
Q ss_pred CCCcEEE-EEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC---------------------------CHhHHHh
Q 030784 81 SDTPVLV-EFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT---------------------------DLTIAED 131 (171)
Q Consensus 81 ~~~~vvV-~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~---------------------------~~~l~~~ 131 (171)
.++.+|| .||++||+.|....+.|.++.+++.+ ++.++.|++|. +..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 4666655 68999999999999999999988863 46777776652 3467778
Q ss_pred CCCC------cccEEEEE-eCCeEEEEE----ecCCCHHHHHHHHHHHh
Q 030784 132 YEIK------AVPVVLLF-KNGEKRETV----VGTMPKEFYIAAIERVL 169 (171)
Q Consensus 132 ~~i~------~~Pt~~~~-~~g~~~~~~----~G~~~~~~l~~~i~~~l 169 (171)
||+. .+|+.+++ .+|++.... .+.++.+++...|+.+.
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 8884 58998888 588777655 33457788888777654
No 144
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.86 E-value=6.5e-08 Score=72.21 Aligned_cols=88 Identities=14% Similarity=0.176 Sum_probs=66.3
Q ss_pred CCCcEEEEEE-cCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC-------------------------CHhHHHhCC
Q 030784 81 SDTPVLVEFY-ASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT-------------------------DLTIAEDYE 133 (171)
Q Consensus 81 ~~~~vvV~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~-------------------------~~~l~~~~~ 133 (171)
.++++||+|| +.||+.|....+.|.++.+++.+ ++.++.|+.|. +..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 4789999999 99999999999999999999853 47777777643 346788899
Q ss_pred C----Ccc--cEEEEE-eCCeEEEEEecC----CCHHHHHHHHHHH
Q 030784 134 I----KAV--PVVLLF-KNGEKRETVVGT----MPKEFYIAAIERV 168 (171)
Q Consensus 134 i----~~~--Pt~~~~-~~g~~~~~~~G~----~~~~~l~~~i~~~ 168 (171)
+ .++ |+.+++ .+|+++...... .+.+++...|+.+
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 8 356 888888 589887765432 3566666666543
No 145
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.85 E-value=5.3e-08 Score=75.42 Aligned_cols=86 Identities=21% Similarity=0.259 Sum_probs=70.7
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC-----------CHhHHHhCCCCcccEEEEEe--CCeE
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT-----------DLTIAEDYEIKAVPVVLLFK--NGEK 148 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~-----------~~~l~~~~~i~~~Pt~~~~~--~g~~ 148 (171)
++.-|++||...|++|+.+.|.++.++++|+ +.++.|++|. +...++++||..+|+++++. .++.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 5577999999999999999999999999987 5666676664 23577899999999999883 4455
Q ss_pred EEEEecCCCHHHHHHHHHHHh
Q 030784 149 RETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 149 ~~~~~G~~~~~~l~~~i~~~l 169 (171)
.-...|.++.++|.+.|..++
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHH
Confidence 556789999999988877654
No 146
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.82 E-value=6.1e-08 Score=63.06 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=58.5
Q ss_pred EEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCH----hHHHhCC--CCcccEEEEEeCCeEEEEEecCCCH
Q 030784 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL----TIAEDYE--IKAVPVVLLFKNGEKRETVVGTMPK 158 (171)
Q Consensus 85 vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~----~l~~~~~--i~~~Pt~~~~~~g~~~~~~~G~~~~ 158 (171)
-|+.|+.+||++|++....|+++..++. ++.+..+|++++. ++.+.++ +..+|++++ +|+.+ ...
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~i------gg~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHI------GGC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEE------cCH
Confidence 4788999999999999999999998864 4889999988753 4555554 589999875 88664 245
Q ss_pred HHHHHHHHHHh
Q 030784 159 EFYIAAIERVL 169 (171)
Q Consensus 159 ~~l~~~i~~~l 169 (171)
+++.++++..+
T Consensus 73 ~~~~~~~~~~~ 83 (85)
T PRK11200 73 TDFEAYVKENL 83 (85)
T ss_pred HHHHHHHHHhc
Confidence 77777776654
No 147
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.81 E-value=2.6e-08 Score=70.47 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=38.2
Q ss_pred CCCcEEEEEEcCCChh-hHHHHHHHHHHHHHhcC----CeEEEEEECC
Q 030784 81 SDTPVLVEFYASWCGP-CRMVHRVIDEIAGEYAG----RLRCFMVNTD 123 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~-C~~~~~~l~~l~~~~~~----~v~~~~vd~d 123 (171)
.++++||.||+.||++ |....+.+.++.+++.+ ++.++.|+.|
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5789999999999998 99999999999998865 3888888875
No 148
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.79 E-value=5.5e-07 Score=62.61 Aligned_cols=98 Identities=22% Similarity=0.352 Sum_probs=77.0
Q ss_pred chhhHHHHHhc-CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccE-EEEEeCCe
Q 030784 70 TKDSWEKSILN-SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPV-VLLFKNGE 147 (171)
Q Consensus 70 ~~~~~~~~~~~-~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt-~~~~~~g~ 147 (171)
+....++++.. .++.|||-|..+|-+.|.++...|.+++++..+-..++.||.++-+++.+.|++. -|. +++|-+++
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 34556666654 5899999999999999999999999999999988999999999999999999999 784 55666777
Q ss_pred EEEEEecCC----------CHHHHHHHHHHH
Q 030784 148 KRETVVGTM----------PKEFYIAAIERV 168 (171)
Q Consensus 148 ~~~~~~G~~----------~~~~l~~~i~~~ 168 (171)
.+..-.|.. +.+++++.++.+
T Consensus 86 hm~vD~GtgnnnKin~~~~~kqe~iDiie~i 116 (133)
T PF02966_consen 86 HMMVDFGTGNNNKINWAFEDKQEFIDIIETI 116 (133)
T ss_dssp EEEEESSSSSSSSBCS--SCHHHHHHHHHHH
T ss_pred EEEEEecCCCccEEEEEcCcHHHHHHHHHHH
Confidence 766555543 356777777643
No 149
>PRK15000 peroxidase; Provisional
Probab=98.76 E-value=7.9e-08 Score=72.51 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=66.6
Q ss_pred CCCcEEEEEEc-CCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHhHHH
Q 030784 81 SDTPVLVEFYA-SWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT----------------------------DLTIAE 130 (171)
Q Consensus 81 ~~~~vvV~f~a-~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 130 (171)
.++++||+||. .||+.|....+.|.++.+++.+ ++.++.|+.|. +..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 57899999999 5999999999999999999863 47778877762 225666
Q ss_pred hCCCC------cccEEEEE-eCCeEEEEEecCC----CHHHHHHHHHH
Q 030784 131 DYEIK------AVPVVLLF-KNGEKRETVVGTM----PKEFYIAAIER 167 (171)
Q Consensus 131 ~~~i~------~~Pt~~~~-~~g~~~~~~~G~~----~~~~l~~~i~~ 167 (171)
.||+. .+|+.+++ ++|++...+.|.. +.+++...|+.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 78887 68988888 4899888776533 45566665554
No 150
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.76 E-value=2.8e-07 Score=67.75 Aligned_cols=102 Identities=19% Similarity=0.310 Sum_probs=84.0
Q ss_pred CeeEechhhHHHHHhcCCCc-EEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCC--cccEEE
Q 030784 65 SRAVVTKDSWEKSILNSDTP-VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIK--AVPVVL 141 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~-vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~--~~Pt~~ 141 (171)
-+.+++.+++.... ..+++ +++.|..........+...++++++++.+++.|+.+|++..+.+++.+|+. .+|+++
T Consensus 78 ~v~~~t~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~v 156 (184)
T PF13848_consen 78 LVPELTPENFEKLF-SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALV 156 (184)
T ss_dssp SCEEESTTHHHHHH-STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEE
T ss_pred cccccchhhHHHHh-cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEE
Confidence 35788999986644 55554 788887778888999999999999999999999999999999999999998 999999
Q ss_pred EEe--CCeEEEEEecCCCHHHHHHHHHH
Q 030784 142 LFK--NGEKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 142 ~~~--~g~~~~~~~G~~~~~~l~~~i~~ 167 (171)
+++ +++......|..+.+.|.+||++
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 157 IFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 996 55543434788899999999874
No 151
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.73 E-value=1.5e-07 Score=81.02 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=75.3
Q ss_pred eEechhhHHHHHhcCCCcEEE-EEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeC
Q 030784 67 AVVTKDSWEKSILNSDTPVLV-EFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKN 145 (171)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vvV-~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~ 145 (171)
..++++.. +.+.+-++++-| .|++++|++|......+++++.+.+ ++..-.+|..+.++++++|+|.++|++++ |
T Consensus 461 ~~l~~~~~-~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~ 536 (555)
T TIGR03143 461 QPLGEELL-EKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--D 536 (555)
T ss_pred CCCCHHHH-HHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE--C
Confidence 45544444 344444666644 5589999999999999999999977 49999999999999999999999999988 8
Q ss_pred CeEEEEEecCCCHHHHHHHH
Q 030784 146 GEKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 146 g~~~~~~~G~~~~~~l~~~i 165 (171)
|+.+ +.|..+.+++.++|
T Consensus 537 ~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 537 DQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred CEEE--EeeCCCHHHHHHhh
Confidence 8765 55888999888876
No 152
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.71 E-value=7.4e-08 Score=72.32 Aligned_cols=76 Identities=17% Similarity=0.345 Sum_probs=56.6
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEEC---------------------------------------
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNT--------------------------------------- 122 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~--------------------------------------- 122 (171)
++..++.|+.++|++|+++.+.+.+ ..+++.+..+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 5789999999999999999998876 222343333322
Q ss_pred ------CCCHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHH
Q 030784 123 ------DTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 123 ------d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 165 (171)
+++..+++++||+++|+++ +.+|+. +.|..+.+++.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 2234688899999999997 778865 57888888777653
No 153
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=1e-07 Score=64.98 Aligned_cols=75 Identities=27% Similarity=0.461 Sum_probs=59.5
Q ss_pred hhhHHHHHhc--CCCcEEEEEEc--------CCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC-------CHhHHHhCC
Q 030784 71 KDSWEKSILN--SDTPVLVEFYA--------SWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT-------DLTIAEDYE 133 (171)
Q Consensus 71 ~~~~~~~~~~--~~~~vvV~f~a--------~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~-------~~~l~~~~~ 133 (171)
.++|++.+.+ +++.++|+|++ +||+.|++..|.+.+.-+..+.++.|+.|++.+ +..+-+..+
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCC
Confidence 3455555532 46669999997 599999999999999999888889999999854 345667777
Q ss_pred C-CcccEEEEEeC
Q 030784 134 I-KAVPVVLLFKN 145 (171)
Q Consensus 134 i-~~~Pt~~~~~~ 145 (171)
+ .++||++-+++
T Consensus 92 ~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTAVPTLLRWKR 104 (128)
T ss_pred ceeecceeeEEcC
Confidence 7 99999998864
No 154
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.69 E-value=1.5e-07 Score=73.36 Aligned_cols=82 Identities=13% Similarity=0.261 Sum_probs=61.6
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEEC---------------------------------------
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNT--------------------------------------- 122 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~--------------------------------------- 122 (171)
++.+|+.|..+.|++|++++..+.++.+. ++|.+..+..
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 46789999999999999999998887765 2355555432
Q ss_pred -----------CCCHhHHHhCCCCcccEEEEEe-CCeEEEEEecCCCHHHHHHHHH
Q 030784 123 -----------DTDLTIAEDYEIKAVPVVLLFK-NGEKRETVVGTMPKEFYIAAIE 166 (171)
Q Consensus 123 -----------d~~~~l~~~~~i~~~Pt~~~~~-~g~~~~~~~G~~~~~~l~~~i~ 166 (171)
+++.++++++||+++|++++-+ +| .+..+.|..+.++|.+.+.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 0122477789999999998864 34 5556789999998888764
No 155
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.68 E-value=1.7e-07 Score=66.73 Aligned_cols=80 Identities=19% Similarity=0.425 Sum_probs=60.0
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC----------------------------------C--
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD----------------------------------T-- 124 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d----------------------------------~-- 124 (171)
..+++|+.|+.++|++|+.+.+.+.++..++++ +.+...+.. .
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~ 82 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD-VRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNALMATRGR 82 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC-ceEEEEeCCccCcchHHHHHHHHHHHHhChhHHHHHHHHHHhcCCC
Confidence 357889999999999999999999998888764 554444330 0
Q ss_pred -----------------------------------CHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHH
Q 030784 125 -----------------------------------DLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIE 166 (171)
Q Consensus 125 -----------------------------------~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~ 166 (171)
+..+++++||.++||+++ +|+ .+.|..+.+.+.+.|+
T Consensus 83 ~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v--~g~---~~~G~~~~~~l~~~i~ 154 (154)
T cd03023 83 LNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFII--GDT---VIPGAVPADTLKEAID 154 (154)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEE--CCE---EecCCCCHHHHHHHhC
Confidence 013445679999999887 674 4689989998887764
No 156
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2e-08 Score=75.62 Aligned_cols=82 Identities=20% Similarity=0.357 Sum_probs=75.0
Q ss_pred cCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHH
Q 030784 80 NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKE 159 (171)
Q Consensus 80 ~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~ 159 (171)
.+++..++.||+.||..|+.+...++.+++... ++.++..+.++.++++..+.+..+|.+.++..|+.+.+..|..+..
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~-~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~ 93 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK-NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPF 93 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh-hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHH
Confidence 478899999999999999999999999999884 5999999999999999999999999999999999999999987765
Q ss_pred HHH
Q 030784 160 FYI 162 (171)
Q Consensus 160 ~l~ 162 (171)
.+.
T Consensus 94 ~~~ 96 (227)
T KOG0911|consen 94 LVS 96 (227)
T ss_pred HHH
Confidence 443
No 157
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.66 E-value=1.6e-07 Score=63.60 Aligned_cols=97 Identities=15% Similarity=0.282 Sum_probs=75.1
Q ss_pred CCeeEechhhHHHHHhcCCCcEEEEEEcC--CChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEE
Q 030784 64 ESRAVVTKDSWEKSILNSDTPVLVEFYAS--WCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVL 141 (171)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~~vvV~f~a~--wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~ 141 (171)
.....++.+++++.+.. +...+++|..+ -|+.+....-++-+|.+.+++.+....+..+...+|+.+||+..+|+++
T Consensus 9 ~g~~~vd~~~ld~~l~~-~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLv 87 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLAA-PGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALV 87 (107)
T ss_dssp -TEEEE-CCCHHHHHHC-CSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred cCCeeechhhHHHHHhC-CCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEE
Confidence 35577888888877655 44445544443 2466677777899999999998888888878889999999999999999
Q ss_pred EEeCCeEEEEEecCCCHHHH
Q 030784 142 LFKNGEKRETVVGTMPKEFY 161 (171)
Q Consensus 142 ~~~~g~~~~~~~G~~~~~~l 161 (171)
++++|+.++.+.|..+++++
T Consensus 88 f~R~g~~lG~i~gi~dW~dY 107 (107)
T PF07449_consen 88 FFRDGRYLGAIEGIRDWADY 107 (107)
T ss_dssp EEETTEEEEEEESSSTHHHH
T ss_pred EEECCEEEEEecCeeccccC
Confidence 99999999999999888753
No 158
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.65 E-value=5.6e-07 Score=70.37 Aligned_cols=88 Identities=15% Similarity=0.201 Sum_probs=65.0
Q ss_pred CCCcEEEEEE-cCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHhHHH
Q 030784 81 SDTPVLVEFY-ASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT----------------------------DLTIAE 130 (171)
Q Consensus 81 ~~~~vvV~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 130 (171)
.++++|++|| +.||+.|....+.|.++.+++.+ ++.++.|..|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4667788877 89999999999999999998863 47777777653 235778
Q ss_pred hCCCC-----cccEEEEEe-CCeEEEEEe----cCCCHHHHHHHHHHH
Q 030784 131 DYEIK-----AVPVVLLFK-NGEKRETVV----GTMPKEFYIAAIERV 168 (171)
Q Consensus 131 ~~~i~-----~~Pt~~~~~-~g~~~~~~~----G~~~~~~l~~~i~~~ 168 (171)
.||+. ..|+.++++ +|++..... ..+..+++...|+.+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 89985 589888885 898888653 223566666666543
No 159
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.64 E-value=3.4e-07 Score=56.92 Aligned_cols=67 Identities=24% Similarity=0.368 Sum_probs=47.8
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhC----CCCcccEEEEEeCCeEEEEEecCCCHHHH
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDY----EIKAVPVVLLFKNGEKRETVVGTMPKEFY 161 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~----~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l 161 (171)
++.|+.+||++|+++...+++. ++.+..++++.+.+..+.+ ++..+|++++ +|+ .+.|. +.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~-~~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGF-RPDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecC-CHHHH
Confidence 5789999999999988877652 3677788888776555443 7899999976 553 34554 55556
Q ss_pred HHH
Q 030784 162 IAA 164 (171)
Q Consensus 162 ~~~ 164 (171)
.++
T Consensus 70 ~~~ 72 (73)
T cd02976 70 RAL 72 (73)
T ss_pred Hhh
Confidence 554
No 160
>PRK13189 peroxiredoxin; Provisional
Probab=98.62 E-value=6.2e-07 Score=68.70 Aligned_cols=88 Identities=14% Similarity=0.134 Sum_probs=63.6
Q ss_pred CCCc-EEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC---------------------------CHhHHHh
Q 030784 81 SDTP-VLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT---------------------------DLTIAED 131 (171)
Q Consensus 81 ~~~~-vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~---------------------------~~~l~~~ 131 (171)
.++. +|+.||++||+.|....+.|.++++++.+ ++.++.|++|. +..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 4664 45577899999999999999999998863 47777777653 2356778
Q ss_pred CCCC-------cccEEEEE-eCCeEEEEEec----CCCHHHHHHHHHHH
Q 030784 132 YEIK-------AVPVVLLF-KNGEKRETVVG----TMPKEFYIAAIERV 168 (171)
Q Consensus 132 ~~i~-------~~Pt~~~~-~~g~~~~~~~G----~~~~~~l~~~i~~~ 168 (171)
||+. .+|+.+++ .+|++.....+ .+..+++...|+.+
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8875 46878887 58888776542 33566777777654
No 161
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.60 E-value=6.1e-07 Score=76.68 Aligned_cols=98 Identities=22% Similarity=0.242 Sum_probs=77.9
Q ss_pred CCeeEechhhHHHHHhcCCC-cEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEE
Q 030784 64 ESRAVVTKDSWEKSILNSDT-PVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLL 142 (171)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~-~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~ 142 (171)
.....|+++..+ .+.+-++ .-+..|++++|++|......+++++...+ +|.+-.+|..+.++++++|+|.++|++++
T Consensus 98 ~~~~~l~~~~~~-~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 98 GHPPKLDQEVIE-QIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL 175 (517)
T ss_pred CCCCCCCHHHHH-HHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE
Confidence 334566555553 3444344 45888999999999999999999999866 59999999999999999999999999976
Q ss_pred EeCCeEEEEEecCCCHHHHHHHHHH
Q 030784 143 FKNGEKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 143 ~~~g~~~~~~~G~~~~~~l~~~i~~ 167 (171)
+|+.. +.|..+.+++.+.+.+
T Consensus 176 --~~~~~--~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 176 --NGEEF--GQGRMTLEEILAKLDT 196 (517)
T ss_pred --CCcEE--EecCCCHHHHHHHHhc
Confidence 77644 6788888888877764
No 162
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.59 E-value=8.6e-07 Score=67.61 Aligned_cols=88 Identities=13% Similarity=0.132 Sum_probs=65.1
Q ss_pred CCCc-EEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC---------------------------CHhHHHh
Q 030784 81 SDTP-VLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT---------------------------DLTIAED 131 (171)
Q Consensus 81 ~~~~-vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~---------------------------~~~l~~~ 131 (171)
.+++ ||+.|+++||+.|....+.|.++.+++.+ ++.++.+++|. +..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 3555 46788999999999999999999999863 47788887764 2356777
Q ss_pred CCCC-------cccEEEEE-eCCeEEEEEec----CCCHHHHHHHHHHH
Q 030784 132 YEIK-------AVPVVLLF-KNGEKRETVVG----TMPKEFYIAAIERV 168 (171)
Q Consensus 132 ~~i~-------~~Pt~~~~-~~g~~~~~~~G----~~~~~~l~~~i~~~ 168 (171)
||+. .+|+++++ .+|++...... .+..+++...|+.+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 67988888 48888776432 23567777777654
No 163
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.57 E-value=8.9e-07 Score=66.90 Aligned_cols=86 Identities=13% Similarity=0.187 Sum_probs=62.6
Q ss_pred Cc-EEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC---------------------------CHhHHHhCC
Q 030784 83 TP-VLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT---------------------------DLTIAEDYE 133 (171)
Q Consensus 83 ~~-vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~---------------------------~~~l~~~~~ 133 (171)
++ +|+.||++||+.|....+.|.++.+++.+ ++.++.|++|. +..+++.||
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 54 45688999999999999999999999863 47888887763 236778888
Q ss_pred CC----c----ccEEEEE-eCCeEEEEEecC----CCHHHHHHHHHHH
Q 030784 134 IK----A----VPVVLLF-KNGEKRETVVGT----MPKEFYIAAIERV 168 (171)
Q Consensus 134 i~----~----~Pt~~~~-~~g~~~~~~~G~----~~~~~l~~~i~~~ 168 (171)
+. + +|+.+++ .+|++.....+. ++.+++...|+.+
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 75 2 3456666 688888776552 3566777777654
No 164
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.57 E-value=7.1e-07 Score=58.28 Aligned_cols=74 Identities=12% Similarity=0.199 Sum_probs=55.0
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC----HhHHHhCCC--CcccEEEEEeCCeEEEEEecCCCHH
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD----LTIAEDYEI--KAVPVVLLFKNGEKRETVVGTMPKE 159 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~----~~l~~~~~i--~~~Pt~~~~~~g~~~~~~~G~~~~~ 159 (171)
|+.|..+||++|++....|+++..++.+ +.+..+|.+.+ .++.+.+|- ..+|.+++ +|+.+ ...+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i------gG~~ 72 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV------GGCT 72 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe------cCHH
Confidence 6778999999999999999998776543 77888888753 356666664 79999965 77553 2456
Q ss_pred HHHHHHHHH
Q 030784 160 FYIAAIERV 168 (171)
Q Consensus 160 ~l~~~i~~~ 168 (171)
++.+++++.
T Consensus 73 dl~~~~~~~ 81 (86)
T TIGR02183 73 DFEQLVKEN 81 (86)
T ss_pred HHHHHHHhc
Confidence 677776654
No 165
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.56 E-value=1.6e-06 Score=69.43 Aligned_cols=114 Identities=12% Similarity=0.193 Sum_probs=75.4
Q ss_pred ccceeeeecCCeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHH-----HHHHHHHHHHHhc--CCeEEEEEECCCCHh
Q 030784 55 LSLKVLCVRESRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRM-----VHRVIDEIAGEYA--GRLRCFMVNTDTDLT 127 (171)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~-----~~~~l~~l~~~~~--~~v~~~~vd~d~~~~ 127 (171)
+.+........+..|+..||.+.+ +..+..+|+||.+--..=.. +...+-+|+++.- ..+.|+.||..++..
T Consensus 25 LefP~YDGkDRVi~LneKNfk~~l-Kkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~k 103 (383)
T PF01216_consen 25 LEFPEYDGKDRVIDLNEKNFKRAL-KKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAK 103 (383)
T ss_dssp -SSSS-SSS--CEEE-TTTHHHHH-HH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHH
T ss_pred cCCccCCCccceEEcchhHHHHHH-HhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHH
Confidence 333344445677899999997754 55667788888876322221 1233444444432 359999999999999
Q ss_pred HHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 128 IAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 128 l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
+++++|+...+++.+|++|+++. |.|.+..+.+..||-.+++
T Consensus 104 lAKKLgv~E~~SiyVfkd~~~IE-ydG~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 104 LAKKLGVEEEGSIYVFKDGEVIE-YDGERSADTLVEFLLDLLE 145 (383)
T ss_dssp HHHHHT--STTEEEEEETTEEEE-E-S--SHHHHHHHHHHHHS
T ss_pred HHHhcCccccCcEEEEECCcEEE-ecCccCHHHHHHHHHHhcc
Confidence 99999999999999999998776 5699999999999988875
No 166
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.56 E-value=1.4e-06 Score=66.37 Aligned_cols=88 Identities=11% Similarity=0.132 Sum_probs=63.4
Q ss_pred CCCcEEE-EEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCCC---------------------------HhHHHh
Q 030784 81 SDTPVLV-EFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDTD---------------------------LTIAED 131 (171)
Q Consensus 81 ~~~~vvV-~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~~---------------------------~~l~~~ 131 (171)
.++++|| .|+++||+.|....+.|.++++++.. ++.++.+++|.. ..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 4666555 77899999999999999999999853 477888877632 356677
Q ss_pred CCCC-------cccEEEEE-eCCeEEEEEecC----CCHHHHHHHHHHH
Q 030784 132 YEIK-------AVPVVLLF-KNGEKRETVVGT----MPKEFYIAAIERV 168 (171)
Q Consensus 132 ~~i~-------~~Pt~~~~-~~g~~~~~~~G~----~~~~~l~~~i~~~ 168 (171)
||+. .+|+.+++ .+|++.....+. ++.+++...|+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8863 36877777 588887765432 3566666666543
No 167
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.53 E-value=4.1e-06 Score=58.97 Aligned_cols=106 Identities=11% Similarity=0.223 Sum_probs=78.4
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEcC--CChh-h-HHHHHHHHHHHHHhcCC-eEEEEEECCCCHhHHHhCCCC--cc
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYAS--WCGP-C-RMVHRVIDEIAGEYAGR-LRCFMVNTDTDLTIAEDYEIK--AV 137 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a~--wC~~-C-~~~~~~l~~l~~~~~~~-v~~~~vd~d~~~~l~~~~~i~--~~ 137 (171)
++.+|+.++..+..=...+.-+|-|.-. .|.. + ......+.++++.+.++ +.|+++|.++...+.+.||+. .+
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~ 82 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGY 82 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCC
Confidence 5677887776554333345555555332 3422 3 45678899999999999 999999999999999999995 49
Q ss_pred cEEEEEeCCe-EEEEEecCCCHHHHHHHHHHHhc
Q 030784 138 PVVLLFKNGE-KRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 138 Pt~~~~~~g~-~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
|+++++...+ +...+.|..+.+.+.+|+++++.
T Consensus 83 P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 83 PAMVAINFRKMKFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred CEEEEEecccCccccccCccCHHHHHHHHHHHHc
Confidence 9999985333 33336788999999999999875
No 168
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.53 E-value=1.1e-06 Score=63.20 Aligned_cols=81 Identities=21% Similarity=0.432 Sum_probs=65.3
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHh--cCCeEEEEEECCCC----------------------------------
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEY--AGRLRCFMVNTDTD---------------------------------- 125 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~--~~~v~~~~vd~d~~---------------------------------- 125 (171)
.+++|+.|+..-|++|+.+.+.+.++.+++ ++++.+...++...
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQEN 91 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCHS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 567899999999999999999999999999 77899888877110
Q ss_pred ----------------------------------HhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHH
Q 030784 126 ----------------------------------LTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 126 ----------------------------------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~ 167 (171)
...++++||.++||+++ ||+.+ .|..+.+.+.+.|++
T Consensus 92 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 92 FENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp TSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred cchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 12445579999999999 99884 788899999999875
No 169
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.52 E-value=6.6e-07 Score=65.51 Aligned_cols=41 Identities=17% Similarity=0.380 Sum_probs=35.3
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEE
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVN 121 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd 121 (171)
.+++.|+.|+...|++|+.+.+.+.++.+++++++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcC
Confidence 56789999999999999999999999999987776665444
No 170
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.48 E-value=3.2e-06 Score=57.00 Aligned_cols=92 Identities=24% Similarity=0.324 Sum_probs=65.6
Q ss_pred chhhHHHHHhcC-CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCH----hHHHhCCCCc-ccEEEEE
Q 030784 70 TKDSWEKSILNS-DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL----TIAEDYEIKA-VPVVLLF 143 (171)
Q Consensus 70 ~~~~~~~~~~~~-~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~----~l~~~~~i~~-~Pt~~~~ 143 (171)
+.+++++.+..+ +++++|+=.++.|+-..+....|++.....++.+.++.+|+-+++ .++++|||+. -|-++++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 456677666554 789999889999999999999999999998877999999997774 5788999974 6999999
Q ss_pred eCCeEEEEEe-cCCCHHHH
Q 030784 144 KNGEKRETVV-GTMPKEFY 161 (171)
Q Consensus 144 ~~g~~~~~~~-G~~~~~~l 161 (171)
++|+.+.... +..+.+.|
T Consensus 86 ~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 86 KNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp ETTEEEEEEEGGG-SHHHH
T ss_pred ECCEEEEECccccCCHHhc
Confidence 9999988643 44555544
No 171
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.46 E-value=9.4e-07 Score=66.92 Aligned_cols=41 Identities=17% Similarity=0.430 Sum_probs=34.0
Q ss_pred CCcEEEEEEcCCChhhHHHHHHH---HHHHHHhcCCeEEEEEEC
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVI---DEIAGEYAGRLRCFMVNT 122 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~ 122 (171)
+++.||+|+.-.|++|..+++.+ +.+.+.+++++.++.+..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 56789999999999999999876 888998887766665543
No 172
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.46 E-value=1.7e-06 Score=65.16 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=57.6
Q ss_pred CCCcEEEEEEc-CCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHhHHH
Q 030784 81 SDTPVLVEFYA-SWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT----------------------------DLTIAE 130 (171)
Q Consensus 81 ~~~~vvV~f~a-~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 130 (171)
.|++++|+||. .||+.|....+.|.++++++.+ ++.++.|+.|. ..++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 47889999995 8899999999999999999874 57888887752 235777
Q ss_pred hCCCC------cccEEEEE-eCCeEEEEEec
Q 030784 131 DYEIK------AVPVVLLF-KNGEKRETVVG 154 (171)
Q Consensus 131 ~~~i~------~~Pt~~~~-~~g~~~~~~~G 154 (171)
.||+. .+|+.+++ .+|+++....+
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~ 145 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVN 145 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEec
Confidence 88885 46888777 48888776655
No 173
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.45 E-value=2.6e-06 Score=58.36 Aligned_cols=102 Identities=10% Similarity=0.006 Sum_probs=78.3
Q ss_pred eeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHH---hcCCeEEEEEECCCCHhHHHhCCCCc--ccEE
Q 030784 66 RAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGE---YAGRLRCFMVNTDTDLTIAEDYEIKA--VPVV 140 (171)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~---~~~~v~~~~vd~d~~~~l~~~~~i~~--~Pt~ 140 (171)
+++++.++.. .+...+.+..+.|+ .=..-..+...+.+++++ +.+++.|+.+|.++.....+.||+.. +|.+
T Consensus 1 ~~e~t~e~~~-~~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i 77 (111)
T cd03072 1 VREITFENAE-ELTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVI 77 (111)
T ss_pred CcccccccHH-HHhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence 3577888885 45566666666666 222346788899999999 99999999999999888999999997 8999
Q ss_pred EEEeCC--eEEEEEecCCCHHHHHHHHHHHhc
Q 030784 141 LLFKNG--EKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 141 ~~~~~g--~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
.+.... .+.....+..+.+.|.+|+++.+.
T Consensus 78 ~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 78 AIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 988432 232225577888999999998875
No 174
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.42 E-value=3.6e-06 Score=71.96 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=77.7
Q ss_pred CeeEechhhHHHHHhcCC-CcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEE
Q 030784 65 SRAVVTKDSWEKSILNSD-TPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLF 143 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~-~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~ 143 (171)
....++++..+ .+.+-+ ...+-.|+.+.|++|......+++++.+.+ +|..-.+|..+.++++++|+|.++|++++
T Consensus 100 ~~~~l~~~~~~-~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i- 176 (515)
T TIGR03140 100 HGPKLDEGIID-RIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL- 176 (515)
T ss_pred CCCCCCHHHHH-HHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE-
Confidence 34566555554 344434 445888999999999999999999999977 48888899999999999999999999987
Q ss_pred eCCeEEEEEecCCCHHHHHHHHHHH
Q 030784 144 KNGEKRETVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 144 ~~g~~~~~~~G~~~~~~l~~~i~~~ 168 (171)
+|+.. +.|..+.+++.+.+.+.
T Consensus 177 -~~~~~--~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 177 -NGEEF--HNGRMDLAELLEKLEET 198 (515)
T ss_pred -CCcEE--EecCCCHHHHHHHHhhc
Confidence 67644 67888888887776543
No 175
>PHA03050 glutaredoxin; Provisional
Probab=98.42 E-value=1.8e-06 Score=58.90 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=48.2
Q ss_pred hHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC---C----HhHHHhCCCCcccEEEEEeC
Q 030784 73 SWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT---D----LTIAEDYEIKAVPVVLLFKN 145 (171)
Q Consensus 73 ~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~---~----~~l~~~~~i~~~Pt~~~~~~ 145 (171)
++-+.+...++ |+.|..+|||+|++....|+++.-+.+ .+..+|+++ . ..+.+..|.+.+|.+++ +
T Consensus 4 ~~v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~ 76 (108)
T PHA03050 4 EFVQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--G 76 (108)
T ss_pred HHHHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--C
Confidence 34444555555 778999999999999988877654333 255566654 3 24556678899999966 7
Q ss_pred CeEE
Q 030784 146 GEKR 149 (171)
Q Consensus 146 g~~~ 149 (171)
|+.+
T Consensus 77 g~~i 80 (108)
T PHA03050 77 KTSI 80 (108)
T ss_pred CEEE
Confidence 8654
No 176
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.40 E-value=4.2e-06 Score=53.62 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=45.2
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC---HhHHHhCCCCcccEEEEEeCCeEE
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD---LTIAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~---~~l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
++.-|+.|+.+||++|++....|++. ++.+..+|++++ .++.+.+|...+|.+++ +|+.+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 34457889999999999999888642 366777887766 45566678999999965 78653
No 177
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.38 E-value=1.9e-06 Score=55.22 Aligned_cols=58 Identities=21% Similarity=0.372 Sum_probs=43.9
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC-H----hHHHhCCCCcccEEEEEeCCeEE
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD-L----TIAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~-~----~l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
|+.|+++||++|+.+...|+++... ..++.++.+.+ . .+.+.+|+..+|.+++ +|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK----PAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC----cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 5789999999999999999887653 45677776655 2 3556679999999744 77653
No 178
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.34 E-value=4.1e-06 Score=50.69 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=42.7
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhH----HHhCCCCcccEEEEEeCCeEE
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI----AEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l----~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
|+.|+.+||++|++....|++ . ++.+-.+|++++++. .+..|...+|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~----~--~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE----K--GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH----T--TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH----c--CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 578999999999998877732 2 377888888877543 33449999999987 77653
No 179
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.29 E-value=5e-06 Score=51.23 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=42.8
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHh----HHHhCCCCcccEEEEEeCCeEEE
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLT----IAEDYEIKAVPVVLLFKNGEKRE 150 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~----l~~~~~i~~~Pt~~~~~~g~~~~ 150 (171)
|+.|+++||++|+.+...|++.. +.+..+|.+.+.+ +.+..+...+|++++ +|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 56789999999999998887664 6677888877654 344467788998854 776543
No 180
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.24 E-value=1e-05 Score=50.80 Aligned_cols=67 Identities=18% Similarity=0.367 Sum_probs=47.6
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhC---CCCcccEEEEEeCCeEEEEEecCCCHHHHH
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDY---EIKAVPVVLLFKNGEKRETVVGTMPKEFYI 162 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~---~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~ 162 (171)
+..|..++|++|++.+..|++. ++.+-.+|++++++..+.+ |...+|++++ +|+. .+.| ...+.+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~--~~~G-~~~~~~~ 69 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL--SWSG-FRPDKLK 69 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc--EEec-cCHHHHH
Confidence 3567889999999999888642 4778888998887665544 8889999866 5542 2344 4555554
Q ss_pred H
Q 030784 163 A 163 (171)
Q Consensus 163 ~ 163 (171)
+
T Consensus 70 ~ 70 (72)
T TIGR02194 70 A 70 (72)
T ss_pred h
Confidence 4
No 181
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.24 E-value=1.5e-05 Score=51.39 Aligned_cols=76 Identities=24% Similarity=0.430 Sum_probs=60.5
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCC----eEEEEEecCCCHHHH
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNG----EKRETVVGTMPKEFY 161 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g----~~~~~~~G~~~~~~l 161 (171)
|+.|..+.|+-|......+.++....+ +.+-.+|+++++++..+|+. .+|.+.+ +| .......+..+.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~-~IPVl~~--~~~~~~~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKYGY-RIPVLHI--DGIRQFKEQEELKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHSCT-STSEEEE--TT-GGGCTSEEEESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcC-CCCEEEE--cCcccccccceeCCCCCHHHH
Confidence 678999999999999999988776644 88999999999999999996 8999876 44 112335678899999
Q ss_pred HHHHH
Q 030784 162 IAAIE 166 (171)
Q Consensus 162 ~~~i~ 166 (171)
.++|+
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 98875
No 182
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.23 E-value=2.3e-05 Score=51.74 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=69.2
Q ss_pred EechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCC-
Q 030784 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNG- 146 (171)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g- 146 (171)
+++..+..+.+...++++||-|+..+|+ .....+.+++..+.+.+.|+.+. +.++++++++.. |++++|+..
T Consensus 3 ~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~ 75 (97)
T cd02981 3 ELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFE 75 (97)
T ss_pred ecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcc
Confidence 3444443344567788999999999987 45678889999987668887775 568888888754 888888653
Q ss_pred eEEEEEecCCCHHHHHHHHHH
Q 030784 147 EKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 147 ~~~~~~~G~~~~~~l~~~i~~ 167 (171)
+....+.|..+.+.|.+||..
T Consensus 76 ~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 76 EEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred cCCccCCCCCCHHHHHHHHHh
Confidence 444557888788889999864
No 183
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.17 E-value=3e-05 Score=48.58 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=46.6
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHh---HHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHH
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLT---IAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYI 162 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~---l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~ 162 (171)
++.|..+||++|.+.+..|++. ++.+..+|++++.. +.+..|...+|.+++ +|+.+ | ..+++.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~i----g--g~~~l~ 68 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELI----G--GSDDLE 68 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEE----e--CHHHHH
Confidence 6779999999999998887742 36677777776542 344468899999855 78654 2 345555
Q ss_pred HHH
Q 030784 163 AAI 165 (171)
Q Consensus 163 ~~i 165 (171)
+++
T Consensus 69 ~~l 71 (72)
T cd03029 69 KYF 71 (72)
T ss_pred HHh
Confidence 554
No 184
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.17 E-value=2.1e-05 Score=53.86 Aligned_cols=98 Identities=15% Similarity=0.222 Sum_probs=70.1
Q ss_pred EechhhHHHHHhcCCCcEEEEEE-c---CCChhhHHHHHHHHHHHHHhc-CCeEEEEEECCCCHhHHHhCCCCc----cc
Q 030784 68 VVTKDSWEKSILNSDTPVLVEFY-A---SWCGPCRMVHRVIDEIAGEYA-GRLRCFMVNTDTDLTIAEDYEIKA----VP 138 (171)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vvV~f~-a---~wC~~C~~~~~~l~~l~~~~~-~~v~~~~vd~d~~~~l~~~~~i~~----~P 138 (171)
+++.++..... ..+.++.|+ . ..-..-......+.+++++++ +++.|+.+|.++.....+.||+.. +|
T Consensus 3 ~~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P 79 (111)
T cd03073 3 HRTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKP 79 (111)
T ss_pred eeccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCC
Confidence 45666665542 333344443 2 233444678899999999999 799999999998888999999984 99
Q ss_pred EEEEEe-CCeEEEEEecCC-CHHHHHHHHHHHh
Q 030784 139 VVLLFK-NGEKRETVVGTM-PKEFYIAAIERVL 169 (171)
Q Consensus 139 t~~~~~-~g~~~~~~~G~~-~~~~l~~~i~~~l 169 (171)
.+.++. ++++. ...+.. +.+.|.+|+++.+
T Consensus 80 ~~~i~~~~~~KY-~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 80 VVAIRTAKGKKY-VMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred EEEEEeCCCCcc-CCCcccCCHHHHHHHHHHhC
Confidence 999985 34222 245666 8899999998753
No 185
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.8e-05 Score=62.50 Aligned_cols=105 Identities=19% Similarity=0.322 Sum_probs=81.9
Q ss_pred cCCeeEechhhHHHHHhcC--CCcEEEEEEcC----CChhhHHHHHHHHHHHHHhc------C--CeEEEEEECCCCHhH
Q 030784 63 RESRAVVTKDSWEKSILNS--DTPVLVEFYAS----WCGPCRMVHRVIDEIAGEYA------G--RLRCFMVNTDTDLTI 128 (171)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~--~~~vvV~f~a~----wC~~C~~~~~~l~~l~~~~~------~--~v~~~~vd~d~~~~l 128 (171)
...+..+++++|...+... +-.++|.|.|. -|.-|+....+++-++..+. + ++-|..||.|+.+++
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 4567899999998887654 44788888875 59999999999999988653 2 588999999999999
Q ss_pred HHhCCCCcccEEEEEe--CCeEEE------EEecCCCHHHHHHHHHHH
Q 030784 129 AEDYEIKAVPVVLLFK--NGEKRE------TVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 129 ~~~~~i~~~Pt~~~~~--~g~~~~------~~~G~~~~~~l~~~i~~~ 168 (171)
.+.++++.+|++++|. .|++.+ ...|. ..|++.+|+++.
T Consensus 119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~-~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGF-EAEQIAQFVADR 165 (331)
T ss_pred HHHhcccCCCeEEEeCCCccccccCccchhhhcch-hHHHHHHHHHHh
Confidence 9999999999999992 333221 11233 478888888765
No 186
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.14 E-value=2.2e-05 Score=49.31 Aligned_cols=56 Identities=13% Similarity=0.234 Sum_probs=41.8
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHH----HhCCCC-cccEEEEEeCCeEE
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIA----EDYEIK-AVPVVLLFKNGEKR 149 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~----~~~~i~-~~Pt~~~~~~g~~~ 149 (171)
++.|+.+||++|++....|++. ++.+..+|++++++.. +.++.. .+|.+++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 5678899999999999888652 3677788888775543 345766 8998865 77654
No 187
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.12 E-value=1.3e-05 Score=53.67 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=39.6
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHh-------HHHhCCCCcccEEEEEeCCeEE
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLT-------IAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~-------l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
|+.|..+||++|++....|+++. +.+..+|+|++++ +.+..|...+|.+++ +|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEE
Confidence 66799999999999988776542 4455666665532 344457889999855 78554
No 188
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.10 E-value=3.1e-05 Score=48.64 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=43.5
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHh----HHHhCCCCcccEEEEEeCCeEE
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLT----IAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~----l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
|+.|+.+||++|++....|++. ++.+..+|++++++ +.+..+-..+|.+++ +|+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 6778999999999998887752 37778888887764 555668889999966 77654
No 189
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.10 E-value=1.4e-05 Score=50.95 Aligned_cols=56 Identities=11% Similarity=0.287 Sum_probs=41.3
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhH----HHhCCCCcccEEEEEeCCeEE
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI----AEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l----~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
|+.|+.+||++|++....|++. ++.+..+|++.+++. .+..|...+|++++ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 4568899999999999888753 266777777777544 44457889999865 77643
No 190
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.09 E-value=6.4e-05 Score=64.94 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=75.6
Q ss_pred HHHHHhcCCCc-EEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEe-CCeEE-E
Q 030784 74 WEKSILNSDTP-VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK-NGEKR-E 150 (171)
Q Consensus 74 ~~~~~~~~~~~-vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~-~g~~~-~ 150 (171)
+...+.+-.++ .++.|+.+.|..|..+...++++++. .+++.+...|.+++.+++++|++...|+|.+++ +|+.. -
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i 435 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASL-SEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGL 435 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhc-CCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccce
Confidence 33334333455 57788888999999999999999954 567999899999999999999999999999994 66543 4
Q ss_pred EEecCCCHHHHHHHHHHHhc
Q 030784 151 TVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 151 ~~~G~~~~~~l~~~i~~~l~ 170 (171)
++.|...-.++..+|..++.
T Consensus 436 ~f~g~P~G~Ef~s~i~~i~~ 455 (555)
T TIGR03143 436 KFHGVPSGHELNSFILALYN 455 (555)
T ss_pred EEEecCccHhHHHHHHHHHH
Confidence 78888777778888877653
No 191
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.08 E-value=0.00011 Score=47.38 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=50.3
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHH---HhCCCCcccEEEEEeCCeEEEEEecCCCHHHHH
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIA---EDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYI 162 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~---~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~ 162 (171)
++.|..+||++|++.+..|++ . ++.|-.+|++++++.. +..|...+|++++ ++. .+.|. ..+.+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~-gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf-~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----R-GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGF-RPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----C-CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecC-CHHHHH
Confidence 667889999999998888744 2 4888899998877643 3457889999966 552 23454 666677
Q ss_pred HHHHH
Q 030784 163 AAIER 167 (171)
Q Consensus 163 ~~i~~ 167 (171)
+++-.
T Consensus 71 ~~~~~ 75 (81)
T PRK10329 71 RLHPA 75 (81)
T ss_pred HHHHh
Confidence 66543
No 192
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=8.6e-05 Score=53.72 Aligned_cols=88 Identities=18% Similarity=0.283 Sum_probs=63.8
Q ss_pred CCCcEEEEEE-cCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECC---------------------CCHhHHHhCCCCc-
Q 030784 81 SDTPVLVEFY-ASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTD---------------------TDLTIAEDYEIKA- 136 (171)
Q Consensus 81 ~~~~vvV~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d---------------------~~~~l~~~~~i~~- 136 (171)
.+++||++|| ..|++.|-...-.+.+...++.. ++.++.|..| .+.++++.||+..
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~ 108 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGE 108 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccc
Confidence 5779999999 78999999999999998888864 5778888774 4567888888843
Q ss_pred -----------ccE-EEEEeCCeEEEEEecCCCH---HHHHHHHHHH
Q 030784 137 -----------VPV-VLLFKNGEKRETVVGTMPK---EFYIAAIERV 168 (171)
Q Consensus 137 -----------~Pt-~~~~~~g~~~~~~~G~~~~---~~l~~~i~~~ 168 (171)
.++ |++-++|++...+...... +.+.+.|+++
T Consensus 109 k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 109 KKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred cccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 234 4444789888887554444 4445555443
No 193
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.99 E-value=3.3e-05 Score=50.17 Aligned_cols=58 Identities=17% Similarity=0.375 Sum_probs=46.0
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC--C------------------------------CHhHHHhCC
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD--T------------------------------DLTIAEDYE 133 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d--~------------------------------~~~l~~~~~ 133 (171)
|+.|++.+|++|..+.+.++++.+..++++.+....+. . +..+++++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 46899999999999999999998777777777766542 1 124667899
Q ss_pred CCcccEEEEE
Q 030784 134 IKAVPVVLLF 143 (171)
Q Consensus 134 i~~~Pt~~~~ 143 (171)
+.++|++++.
T Consensus 81 ~~g~Pt~v~~ 90 (98)
T cd02972 81 VTGTPTFVVN 90 (98)
T ss_pred CCCCCEEEEC
Confidence 9999999884
No 194
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.92 E-value=0.00015 Score=48.31 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=41.2
Q ss_pred CcEEEEEE----cCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhH----HHhCCCCcccEEEEEeCCeEE
Q 030784 83 TPVLVEFY----ASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI----AEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 83 ~~vvV~f~----a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l----~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
+.|+|+-. .+||++|++....|++.. +.+..+|+++++++ .+..|-..+|.+++ +|+.+
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~i 78 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFV 78 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 44555443 289999999988886642 56777888776543 34567789999866 77654
No 195
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00014 Score=46.75 Aligned_cols=54 Identities=17% Similarity=0.385 Sum_probs=39.7
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCH-----hHHHhC-CCCcccEEEEEeCCe
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL-----TIAEDY-EIKAVPVVLLFKNGE 147 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~-----~l~~~~-~i~~~Pt~~~~~~g~ 147 (171)
++.|..+||++|++....|++. ++.+..++.+++. +..++. |.+.+|.+++ +|+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCE
Confidence 6678899999999998888722 3666666665554 344455 8999999987 775
No 196
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.86 E-value=0.00011 Score=48.27 Aligned_cols=60 Identities=20% Similarity=0.341 Sum_probs=41.6
Q ss_pred CCcEEEEEEc----CCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhH----HHhCCCCcccEEEEEeCCeEE
Q 030784 82 DTPVLVEFYA----SWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI----AEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 82 ~~~vvV~f~a----~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l----~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
+++|+|+-.. +||++|++....|++.. +.+..+|++++.++ .+..|-..+|.+++ +|+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~i 74 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELV 74 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 3455665443 79999999888886653 56777777766544 44568889999855 77653
No 197
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.85 E-value=0.00012 Score=54.48 Aligned_cols=99 Identities=13% Similarity=0.293 Sum_probs=77.4
Q ss_pred CCeeEechhhHHHHHhcC--CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEE
Q 030784 64 ESRAVVTKDSWEKSILNS--DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVL 141 (171)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~--~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~ 141 (171)
.++.+++..+|.+.+... +-.|||..|...-+.|..+.-.|+.++..|+. ++|+++-.... ...|.=..+||++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~c---IpNYPe~nlPTl~ 166 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTC---IPNYPESNLPTLL 166 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccccc---cCCCcccCCCeEE
Confidence 467889999988888654 67899999999999999999999999999996 99998854322 2346667899999
Q ss_pred EEeCCeEEEEEecCC-------CHHHHHHHHH
Q 030784 142 LFKNGEKRETVVGTM-------PKEFYIAAIE 166 (171)
Q Consensus 142 ~~~~g~~~~~~~G~~-------~~~~l~~~i~ 166 (171)
+|..|.+...+.|.. +.+.+..++-
T Consensus 167 VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~ 198 (240)
T KOG3170|consen 167 VYHHGALKKQMIGLLELGGMNLTMEDVEDFLV 198 (240)
T ss_pred EeecchHHhheehhhhhcCCcCCHHHHHHHHH
Confidence 999888777666543 4455655543
No 198
>PRK10824 glutaredoxin-4; Provisional
Probab=97.82 E-value=0.00016 Score=49.79 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=40.5
Q ss_pred CcEEEEEEc----CCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHH----hCCCCcccEEEEEeCCeEEE
Q 030784 83 TPVLVEFYA----SWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAE----DYEIKAVPVVLLFKNGEKRE 150 (171)
Q Consensus 83 ~~vvV~f~a----~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~----~~~i~~~Pt~~~~~~g~~~~ 150 (171)
.+|||+--. +||++|++....|+++. +.+..+|+++++++.+ .-|-..+|.+++ +|+.++
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IG 82 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVG 82 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 444554433 69999999998887753 4455667776655433 346778999877 887763
No 199
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00044 Score=46.69 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=41.8
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCH-hHH----HhCCCCcccEEEEEeCCeEE
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL-TIA----EDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~-~l~----~~~~i~~~Pt~~~~~~g~~~ 149 (171)
||.|-.+||++|+++...|.+ ++....++.+|-+.+. ++. +.-|.+.+|.+++ +|+.+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~i 78 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFI 78 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEE
Confidence 566999999999998877776 4445667777765542 333 3345679999887 88776
No 200
>PRK10638 glutaredoxin 3; Provisional
Probab=97.75 E-value=0.00023 Score=45.85 Aligned_cols=56 Identities=11% Similarity=0.251 Sum_probs=41.4
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHh----HHHhCCCCcccEEEEEeCCeEE
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLT----IAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~----l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
++.|..+||++|++....|++. ++.+..+|++++++ +.+..|...+|++++ +|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 5678889999999998888753 25667778876653 455568889998855 77554
No 201
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.67 E-value=0.0001 Score=55.53 Aligned_cols=86 Identities=16% Similarity=0.329 Sum_probs=70.4
Q ss_pred CeeEe-chhhHHHHHhcCC--CcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEE
Q 030784 65 SRAVV-TKDSWEKSILNSD--TPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVL 141 (171)
Q Consensus 65 ~~~~l-~~~~~~~~~~~~~--~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~ 141 (171)
.+.++ +.+.|.+.+...- ..++|..|-+--.-|..+...+.-|+.+|+- +.|+++-.. +....++|..+++|++.
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss-~~gas~~F~~n~lP~Ll 216 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSS-NTGASDRFSLNVLPTLL 216 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeec-cccchhhhcccCCceEE
Confidence 34555 4566877776553 4778899999999999999999999999995 999998654 45677899999999999
Q ss_pred EEeCCeEEEEE
Q 030784 142 LFKNGEKRETV 152 (171)
Q Consensus 142 ~~~~g~~~~~~ 152 (171)
+|++|+.+..+
T Consensus 217 iYkgGeLIgNF 227 (273)
T KOG3171|consen 217 IYKGGELIGNF 227 (273)
T ss_pred EeeCCchhHHH
Confidence 99999988744
No 202
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.66 E-value=0.00014 Score=53.77 Aligned_cols=35 Identities=14% Similarity=0.341 Sum_probs=27.6
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEEC
Q 030784 88 EFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNT 122 (171)
Q Consensus 88 ~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~ 122 (171)
+|..|+|+.|-...|.|.++..+|+.++.+-.+-.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~ 36 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPG 36 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEc
Confidence 58999999999999999999999998877666644
No 203
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.63 E-value=0.00053 Score=49.59 Aligned_cols=75 Identities=12% Similarity=0.114 Sum_probs=50.0
Q ss_pred CCcEEEEE-EcCCChhhHHH-HHHHHHHHHHhcC-Ce-EEEEEECC-----------------------CCHhHHHhCCC
Q 030784 82 DTPVLVEF-YASWCGPCRMV-HRVIDEIAGEYAG-RL-RCFMVNTD-----------------------TDLTIAEDYEI 134 (171)
Q Consensus 82 ~~~vvV~f-~a~wC~~C~~~-~~~l~~l~~~~~~-~v-~~~~vd~d-----------------------~~~~l~~~~~i 134 (171)
++++||+| .+.||+.|... .+.|.+..+++.. ++ .++.+..| .+.++++.||+
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv 108 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALGL 108 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCC
Confidence 44555555 58999999998 8888888888752 34 46666653 34567888887
Q ss_pred C------c-----ccEEEEEeCCeEEEEEecCC
Q 030784 135 K------A-----VPVVLLFKNGEKRETVVGTM 156 (171)
Q Consensus 135 ~------~-----~Pt~~~~~~g~~~~~~~G~~ 156 (171)
. + ....+++++|++...+....
T Consensus 109 ~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~~ 141 (155)
T cd03013 109 TLDLSAAGGGIRSKRYALIVDDGKVKYLFVEED 141 (155)
T ss_pred CccccccCCcceeeeEEEEECCCEEEEEEEecC
Confidence 3 1 23445557888877665443
No 204
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.52 E-value=0.0013 Score=43.80 Aligned_cols=96 Identities=13% Similarity=0.235 Sum_probs=70.9
Q ss_pred chhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC--CHhHHHhCCCC----cccE-EEE
Q 030784 70 TKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT--DLTIAEDYEIK----AVPV-VLL 142 (171)
Q Consensus 70 ~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~--~~~l~~~~~i~----~~Pt-~~~ 142 (171)
+..+|.+++. ..+-|+|.|..+- ..-......+.+.++...+.-.+..|||.+ ...||+++.|. --|. +..
T Consensus 8 d~KdfKKLLR-Tr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkH 85 (112)
T cd03067 8 DHKDFKKLLR-TRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKH 85 (112)
T ss_pred chHHHHHHHh-hcCcEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhc
Confidence 4466766554 4445566555443 333444568888999988888899999976 68999999998 5664 455
Q ss_pred EeCCeEEEEEecCCCHHHHHHHHHH
Q 030784 143 FKNGEKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 143 ~~~g~~~~~~~G~~~~~~l~~~i~~ 167 (171)
|++|.....|....+...+..|++.
T Consensus 86 YKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 86 YKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred ccCCCccccccchhhHHHHHHHhhC
Confidence 7999998888888888888888763
No 205
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.45 E-value=0.0089 Score=41.35 Aligned_cols=101 Identities=21% Similarity=0.306 Sum_probs=68.6
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHH-HHh--cCCeEEEEEECC-----CCHhHHHhCCC--
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIA-GEY--AGRLRCFMVNTD-----TDLTIAEDYEI-- 134 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~-~~~--~~~v~~~~vd~d-----~~~~l~~~~~i-- 134 (171)
....|+.-+|++.+ .+-+.++|.|=... +--.-+..+.+++ +.. .+.+.+..|-+. +|.+|+++|+|
T Consensus 5 G~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 5 GCVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TSEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred ceeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 34677888997765 45688999995432 2223356777787 333 245888888763 57999999999
Q ss_pred CcccEEEEEe-CCeEEEEE--ecCCCHHHHHHHHHHH
Q 030784 135 KAVPVVLLFK-NGEKRETV--VGTMPKEFYIAAIERV 168 (171)
Q Consensus 135 ~~~Pt~~~~~-~g~~~~~~--~G~~~~~~l~~~i~~~ 168 (171)
..+|.+.+|. +.+..-.+ .|..+.+.|..|+++.
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 5789999996 55555566 7888999999998864
No 206
>PTZ00062 glutaredoxin; Provisional
Probab=97.39 E-value=0.0013 Score=49.69 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=40.6
Q ss_pred CcEEEEEE----cCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHH----HhCCCCcccEEEEEeCCeEE
Q 030784 83 TPVLVEFY----ASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIA----EDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 83 ~~vvV~f~----a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~----~~~~i~~~Pt~~~~~~g~~~ 149 (171)
++|+|+-- .|||++|++....|++. ++.+..+|+++++++. +..|-..+|.+++ +|+.+
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~I 179 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELI 179 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 44555433 37999999988777643 3667788888776543 3346678898877 78664
No 207
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0014 Score=50.51 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=31.4
Q ss_pred hHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHh
Q 030784 127 TIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 127 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l 169 (171)
.+++++||.++|++++ +|+ .+.|..+.+++.+.|+..+
T Consensus 206 ~~a~~~gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 206 KLAQQLGVNGTPTFIV--NGK---LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHHhcCCCcCCeEEE--CCe---eecCCCCHHHHHHHHHHhh
Confidence 5677889999999988 554 6788888999999888765
No 208
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.22 E-value=0.0015 Score=54.52 Aligned_cols=56 Identities=13% Similarity=0.272 Sum_probs=41.7
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHh---HHHh---------CCCCcccEEEEEeCCeEE
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLT---IAED---------YEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~---l~~~---------~~i~~~Pt~~~~~~g~~~ 149 (171)
|+.|..+||++|++....|++. ++.+..+|+++++. +.++ .|.+.+|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 7789999999999988777653 37788888887763 2222 47889999977 67543
No 209
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0018 Score=56.47 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=67.1
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHH-H--HHHHHHhcCCeEEEEEECCCCHhHHHhCC--------
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRV-I--DEIAGEYAGRLRCFMVNTDTDLTIAEDYE-------- 133 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~-l--~~l~~~~~~~v~~~~vd~d~~~~l~~~~~-------- 133 (171)
......++.|. .....+||++|-....||.-|+.|... + .++++-.+....-++||-++-|++.+.|.
T Consensus 27 ~W~pW~~eAf~-~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG 105 (667)
T COG1331 27 DWYPWGEEAFA-KAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITG 105 (667)
T ss_pred cccccCHHHHH-HHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhcc
Confidence 44667788885 456789999999999999999998854 2 56666667678889999999999888774
Q ss_pred CCcccEEEEE-eCCeEEE
Q 030784 134 IKAVPVVLLF-KNGEKRE 150 (171)
Q Consensus 134 i~~~Pt~~~~-~~g~~~~ 150 (171)
-.++|-.+|. .+|+...
T Consensus 106 ~GGWPLtVfLTPd~kPFf 123 (667)
T COG1331 106 QGGWPLTVFLTPDGKPFF 123 (667)
T ss_pred CCCCceeEEECCCCceee
Confidence 6799966665 6887765
No 210
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.18 E-value=0.004 Score=45.92 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=29.0
Q ss_pred hHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHH
Q 030784 127 TIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIE 166 (171)
Q Consensus 127 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~ 166 (171)
..+.++||.++|++++ +|+ ..+.|....+.+.+.|+
T Consensus 158 ~~a~~~gv~GvP~~vv--~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 158 AEARQLGVFGVPTFVV--NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHTTCSSSSEEEE--TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHHHcCCcccCEEEE--CCE--EEEECCCCHHHHHHHhC
Confidence 3556689999999999 887 66899999998888764
No 211
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.12 E-value=0.0057 Score=44.62 Aligned_cols=65 Identities=22% Similarity=0.316 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCC-eEEEEEecC-CCHHHHHHHHHHH
Q 030784 100 VHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNG-EKRETVVGT-MPKEFYIAAIERV 168 (171)
Q Consensus 100 ~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g-~~~~~~~G~-~~~~~l~~~i~~~ 168 (171)
....+.++++.+.+.+.|+.+. +.++++++++.. |++++|+++ +....+.|. .+.+.|.+||+..
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence 4567899999999779999887 778999999999 999999863 445678887 7999999999864
No 212
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.78 E-value=0.013 Score=45.09 Aligned_cols=44 Identities=11% Similarity=0.317 Sum_probs=38.8
Q ss_pred hcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEEC
Q 030784 79 LNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNT 122 (171)
Q Consensus 79 ~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~ 122 (171)
.+.++|.||+|.+-.|++=+.-...+++++++|.+.+.|+.|-+
T Consensus 99 ~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 99 AKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred ccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 46799999999999999999999999999999998666766654
No 213
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.77 E-value=0.054 Score=36.11 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=62.0
Q ss_pred eEe-chhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeC
Q 030784 67 AVV-TKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKN 145 (171)
Q Consensus 67 ~~l-~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~ 145 (171)
.++ +.++.++.+...+..+||-|+..--. .....+.+++..+.+...|+.. .+.++++.+++. .|.++++++
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~~-~~~i~l~~~ 75 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFAT---FDSKVAKKLGLK-MNEVDFYEP 75 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEE---CcHHHHHHcCCC-CCcEEEeCC
Confidence 344 44556555531555666666655333 3456788889888666777554 344778888875 688888854
Q ss_pred -CeEEEEE-ecCCCHHHHHHHHHHH
Q 030784 146 -GEKRETV-VGTMPKEFYIAAIERV 168 (171)
Q Consensus 146 -g~~~~~~-~G~~~~~~l~~~i~~~ 168 (171)
++....+ .|..+.+.|.+||...
T Consensus 76 ~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 76 FMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCcccCCCCCCHHHHHHHHHHh
Confidence 4444446 6777889999999764
No 214
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.034 Score=40.01 Aligned_cols=91 Identities=16% Similarity=0.209 Sum_probs=65.2
Q ss_pred cCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC--------CH---hHHH-hCCCC-----------
Q 030784 80 NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT--------DL---TIAE-DYEIK----------- 135 (171)
Q Consensus 80 ~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~--------~~---~l~~-~~~i~----------- 135 (171)
-.+++++|.=.|+.||.-- ...-|+.|.++|.+ ++.++..-|++ +. ++|+ .|||+
T Consensus 23 ~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~VnG 101 (162)
T COG0386 23 YKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNG 101 (162)
T ss_pred hCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeecC
Confidence 3699999999999999887 45578888888876 36666665542 11 2232 34442
Q ss_pred ------------c-------------ccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHhcC
Q 030784 136 ------------A-------------VPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 171 (171)
Q Consensus 136 ------------~-------------~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~~ 171 (171)
. .=-|++-++|+.+.|+.-....+++...|+++|++
T Consensus 102 ~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~~ 162 (162)
T COG0386 102 KNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLAE 162 (162)
T ss_pred CCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhcC
Confidence 1 11344447999999999988999999999999874
No 215
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.49 E-value=0.021 Score=41.02 Aligned_cols=56 Identities=18% Similarity=0.287 Sum_probs=39.8
Q ss_pred EEEEEcC------CChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHh----HHHhCCC----CcccEEEEEeCCeEE
Q 030784 86 LVEFYAS------WCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLT----IAEDYEI----KAVPVVLLFKNGEKR 149 (171)
Q Consensus 86 vV~f~a~------wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~----l~~~~~i----~~~Pt~~~~~~g~~~ 149 (171)
||.|+++ +|++|++++..|+.+ +|.|..+|++.+.+ |.+.++- ..+|.+++ +|+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~I 71 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYL 71 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEE
Confidence 4455666 999999998888654 37788889887654 4444454 68898877 77655
No 216
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.39 E-value=0.098 Score=35.02 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=58.9
Q ss_pred chhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeC----
Q 030784 70 TKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKN---- 145 (171)
Q Consensus 70 ~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~---- 145 (171)
+.+++++.+ ..++.+||-|+..--. .....+.+++..+.+...|+... +.++++.|++ .|.+++|+.
T Consensus 7 s~~~l~~f~-~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~ 77 (104)
T cd03069 7 TEAEFEKFL-SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLS 77 (104)
T ss_pred CHHHHHHHh-ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhh
Confidence 344454444 4566667666665433 35567788888886667776553 3477889998 677888831
Q ss_pred ---CeEEEEEecCCCHHHHHHHHHHH
Q 030784 146 ---GEKRETVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 146 ---g~~~~~~~G~~~~~~l~~~i~~~ 168 (171)
.+....+.|..+.+.|.+||...
T Consensus 78 ~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 78 NKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred cccCcccccccCcCCHHHHHHHHHhh
Confidence 12223478877888999998753
No 217
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.37 E-value=0.15 Score=33.72 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=53.5
Q ss_pred HHHhcCCCcEEE-EEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEE-EEEe
Q 030784 76 KSILNSDTPVLV-EFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKR-ETVV 153 (171)
Q Consensus 76 ~~~~~~~~~vvV-~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~-~~~~ 153 (171)
..+.+-.++|.+ .|..+. ..|..+...++++++.- +++.+...+.+. ..|++.+.++|+.. -++.
T Consensus 12 ~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~ 78 (94)
T cd02974 12 AYLERLENPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFA 78 (94)
T ss_pred HHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC-----------CCCEEEEecCCCcccEEEE
Confidence 333333555555 455544 99999999999998874 467765544332 47999998776432 4678
Q ss_pred cCCCHHHHHHHHHHH
Q 030784 154 GTMPKEFYIAAIERV 168 (171)
Q Consensus 154 G~~~~~~l~~~i~~~ 168 (171)
|...-.++..+|..+
T Consensus 79 GiP~GhEf~Slilai 93 (94)
T cd02974 79 GIPMGHEFTSLVLAL 93 (94)
T ss_pred ecCCchhHHHHHHHh
Confidence 877667777777654
No 218
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.35 E-value=0.058 Score=38.13 Aligned_cols=73 Identities=21% Similarity=0.326 Sum_probs=55.2
Q ss_pred cEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCC----cccEEEEEeCCeEEEEEecCCCHH
Q 030784 84 PVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIK----AVPVVLLFKNGEKRETVVGTMPKE 159 (171)
Q Consensus 84 ~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~----~~Pt~~~~~~g~~~~~~~G~~~~~ 159 (171)
.-++.+++|.||=|......++ . . .+.+..+..|+-..+-++|||. +--|.++ +|. .++|..+.+
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk----~-~-Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy---~vEGHVPa~ 94 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK----A-N-GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGY---YVEGHVPAE 94 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH----h-C-CcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCE---EEeccCCHH
Confidence 4578899999999997665554 2 2 3777778888888888889884 5567777 884 468999999
Q ss_pred HHHHHHHH
Q 030784 160 FYIAAIER 167 (171)
Q Consensus 160 ~l~~~i~~ 167 (171)
.+..++++
T Consensus 95 aI~~ll~~ 102 (149)
T COG3019 95 AIARLLAE 102 (149)
T ss_pred HHHHHHhC
Confidence 98888764
No 219
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=96.33 E-value=0.11 Score=39.37 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=64.2
Q ss_pred CCCcEEEEEEcCCC-hhhHHHHHHHHHHHHHhc----CCeEEEEEECCCC-----------------------------H
Q 030784 81 SDTPVLVEFYASWC-GPCRMVHRVIDEIAGEYA----GRLRCFMVNTDTD-----------------------------L 126 (171)
Q Consensus 81 ~~~~vvV~f~a~wC-~~C~~~~~~l~~l~~~~~----~~v~~~~vd~d~~-----------------------------~ 126 (171)
.+++++|+|.-++| ..|-.+...+..+.++.. +++.++.|.+|-+ .
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~~ 145 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQIE 145 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHHH
Confidence 69999999999999 679998888888887776 2355555444321 2
Q ss_pred hHHHhCCCCc---------------ccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHhcC
Q 030784 127 TIAEDYEIKA---------------VPVVLLF-KNGEKRETVVGTMPKEFYIAAIERVLKS 171 (171)
Q Consensus 127 ~l~~~~~i~~---------------~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~l~~ 171 (171)
++++.|+|.. -..++++ .+|+....+.+..+.+.+.+.|+++++.
T Consensus 146 ~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 146 EVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred HHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 4555555542 1233344 4899999888877788899999988763
No 220
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=96.13 E-value=0.035 Score=34.86 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=49.8
Q ss_pred EEEEEEcCCChhhHHHHHHHHHHHHHh-cCCeEEEEEECCCCHhHHHhCCCCcccEEEEE
Q 030784 85 VLVEFYASWCGPCRMVHRVIDEIAGEY-AGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLF 143 (171)
Q Consensus 85 vvV~f~a~wC~~C~~~~~~l~~l~~~~-~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~ 143 (171)
++..|-+..-+..++....+.++.+++ ++...+-.+|+.+++++++.++|-.+||++-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 456666777788888888999998887 45688899999999999999999999997653
No 221
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.04 E-value=0.0016 Score=51.72 Aligned_cols=87 Identities=21% Similarity=0.332 Sum_probs=68.4
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEE-CCCCHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHH
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVN-TDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEF 160 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd-~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~ 160 (171)
...|-+.||+.||+.-+.++|.++-....+.. +....++ ...-+....+||+.+.|++++. +-..-.++.|......
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~-n~t~~~~~~~~r~l~s 153 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLML-NQTCPASYRGERDLAS 153 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceee-ccccchhhcccccHHH
Confidence 56899999999999999999999888887774 4334432 3445778899999999999876 4445567888889999
Q ss_pred HHHHHHHHhc
Q 030784 161 YIAAIERVLK 170 (171)
Q Consensus 161 l~~~i~~~l~ 170 (171)
++++..+++.
T Consensus 154 Lv~fy~~i~~ 163 (319)
T KOG2640|consen 154 LVNFYTEITP 163 (319)
T ss_pred HHHHHHhhcc
Confidence 9999888764
No 222
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.01 E-value=0.13 Score=44.23 Aligned_cols=86 Identities=12% Similarity=0.110 Sum_probs=60.8
Q ss_pred hHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEE-EE
Q 030784 73 SWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKR-ET 151 (171)
Q Consensus 73 ~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~-~~ 151 (171)
+....+.+-.++|-+.++.+.|..|..+...++++++.- +++.+...+.+ ...|++.+.++|+.. -+
T Consensus 9 ~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~ 76 (517)
T PRK15317 9 QLKQYLELLERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLD-----------VRKPSFSITRPGEDTGVR 76 (517)
T ss_pred HHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCC-----------CCCCEEEEEcCCccceEE
Confidence 344444444677767666768999999999999999875 46776443322 347999998777554 47
Q ss_pred EecCCCHHHHHHHHHHHhc
Q 030784 152 VVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 152 ~~G~~~~~~l~~~i~~~l~ 170 (171)
+.|...-.++..+|..++.
T Consensus 77 f~g~P~g~Ef~s~i~~i~~ 95 (517)
T PRK15317 77 FAGIPMGHEFTSLVLALLQ 95 (517)
T ss_pred EEecCccHHHHHHHHHHHH
Confidence 8888777778888877653
No 223
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.85 E-value=0.17 Score=43.55 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=60.1
Q ss_pred HHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEE-EEE
Q 030784 74 WEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKR-ETV 152 (171)
Q Consensus 74 ~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~-~~~ 152 (171)
....+.+-.++|.+.++.+.|..|..+...++++++.- +++.+...+.+. ...|++.+.++|+.. -++
T Consensus 10 l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f 78 (515)
T TIGR03140 10 LKSYLASLENPVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTADT----------LRKPSFTILRDGADTGIRF 78 (515)
T ss_pred HHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecCCc----------CCCCeEEEecCCcccceEE
Confidence 33444444666766666558999999999999998874 568775554332 356999888777643 478
Q ss_pred ecCCCHHHHHHHHHHHh
Q 030784 153 VGTMPKEFYIAAIERVL 169 (171)
Q Consensus 153 ~G~~~~~~l~~~i~~~l 169 (171)
.|...-.++..+|..++
T Consensus 79 ~g~P~g~Ef~s~i~~i~ 95 (515)
T TIGR03140 79 AGIPGGHEFTSLVLAIL 95 (515)
T ss_pred EecCCcHHHHHHHHHHH
Confidence 88877777888887765
No 224
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=95.56 E-value=0.074 Score=41.46 Aligned_cols=98 Identities=14% Similarity=0.211 Sum_probs=66.0
Q ss_pred eEechhhHHHHHhcCCCcEEEEEEcCCCh-hhHHHHHHHHHHHHHhcCC------eEEEEEECCCC--------------
Q 030784 67 AVVTKDSWEKSILNSDTPVLVEFYASWCG-PCRMVHRVIDEIAGEYAGR------LRCFMVNTDTD-------------- 125 (171)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vvV~f~a~wC~-~C~~~~~~l~~l~~~~~~~------v~~~~vd~d~~-------------- 125 (171)
+..++++| .||.++++|.-++|+ -|-.....|-++..+...+ -.|+.||-+.+
T Consensus 130 k~~te~df------~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~p 203 (280)
T KOG2792|consen 130 KRVTEKDF------LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHP 203 (280)
T ss_pred Ceeccccc------ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcCh
Confidence 44555555 489999999999995 5887777776666655421 24667776322
Q ss_pred ------------HhHHHhCCCCccc-------------EEEEE---eCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 126 ------------LTIAEDYEIKAVP-------------VVLLF---KNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 126 ------------~~l~~~~~i~~~P-------------t~~~~---~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
..+|++|.|..-. ++++| .+|+.++.+.-..+.+++.+.|.+.++
T Consensus 204 kllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 204 KLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred hhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 3577777764322 44554 488888877667788888888877654
No 225
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=95.51 E-value=0.46 Score=32.21 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=71.8
Q ss_pred EechhhHHHHHhc-CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC--CeEEEEEECCCCHhHHH----hCCCC-cccE
Q 030784 68 VVTKDSWEKSILN-SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG--RLRCFMVNTDTDLTIAE----DYEIK-AVPV 139 (171)
Q Consensus 68 ~l~~~~~~~~~~~-~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~d~~~~l~~----~~~i~-~~Pt 139 (171)
.++.+++.+.=.. -+...+|.|-..--+.-.++.++++++++++.+ ++.|+.||-|+-+-+.. .|+|. .-|.
T Consensus 5 kl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~Pq 84 (120)
T cd03074 5 KLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQ 84 (120)
T ss_pred hccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCc
Confidence 3445554443322 256788999999999999999999999999863 69999999999877654 56664 3487
Q ss_pred EEEEe--CCeEEE-EEe---cCCCHHHHHHHHHHHh
Q 030784 140 VLLFK--NGEKRE-TVV---GTMPKEFYIAAIERVL 169 (171)
Q Consensus 140 ~~~~~--~g~~~~-~~~---G~~~~~~l~~~i~~~l 169 (171)
+-++. +.+-+. ... ...+.+.+.+||+.+|
T Consensus 85 IGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 85 IGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred eeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 77762 222222 222 3367899999999875
No 226
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=95.35 E-value=0.24 Score=41.26 Aligned_cols=90 Identities=12% Similarity=0.210 Sum_probs=63.0
Q ss_pred cCCCcEEEEEEcCCChhhHHHH--HHHHHHHHHhcC-CeEEEEEECC--CCHhHHHhCCCCcccEEEEE-eCCeEEEEEe
Q 030784 80 NSDTPVLVEFYASWCGPCRMVH--RVIDEIAGEYAG-RLRCFMVNTD--TDLTIAEDYEIKAVPVVLLF-KNGEKRETVV 153 (171)
Q Consensus 80 ~~~~~vvV~f~a~wC~~C~~~~--~~l~~l~~~~~~-~v~~~~vd~d--~~~~l~~~~~i~~~Pt~~~~-~~g~~~~~~~ 153 (171)
+.++.++|.|.+..-.....+. -..+....+.-. .+..++|+.. ....+..-|.+-.+|+++++ +.|..+..+.
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 3466777778777777777766 223333333221 2333444432 23677888999999999888 7999999999
Q ss_pred cCCCHHHHHHHHHHHh
Q 030784 154 GTMPKEFYIAAIERVL 169 (171)
Q Consensus 154 G~~~~~~l~~~i~~~l 169 (171)
|....++|...|++.+
T Consensus 96 g~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 96 GFVTADELASSIEKVW 111 (506)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999998888764
No 227
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=95.25 E-value=1 Score=35.25 Aligned_cols=71 Identities=24% Similarity=0.381 Sum_probs=47.8
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEcCC------ChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHh----CCC
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYASW------CGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAED----YEI 134 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a~w------C~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~----~~i 134 (171)
....|++.+. +.+.+-+++|-|.+|.+- -..=+.+...|++++..-++++.+-.+|.+.+++.+++ |||
T Consensus 8 k~ysLS~~T~-~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi 86 (271)
T PF09822_consen 8 KRYSLSDQTK-KVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGI 86 (271)
T ss_pred CCccCCHHHH-HHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCC
Confidence 4456666665 445555778888877665 33444555555555555555899999999888777666 888
Q ss_pred Cc
Q 030784 135 KA 136 (171)
Q Consensus 135 ~~ 136 (171)
..
T Consensus 87 ~~ 88 (271)
T PF09822_consen 87 QP 88 (271)
T ss_pred Cc
Confidence 76
No 228
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=95.02 E-value=0.19 Score=32.76 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=59.6
Q ss_pred CcEEEEEEcCCChhhHHHHHHHHHHHHHh-cCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCH
Q 030784 83 TPVLVEFYASWCGPCRMVHRVIDEIAGEY-AGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158 (171)
Q Consensus 83 ~~vvV~f~a~wC~~C~~~~~~l~~l~~~~-~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~ 158 (171)
+.++=.|.+..-+..++....+.++.+++ ++...+-.+|+.+++++++.++|-++||++-. .-....++.|.++.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~-~P~P~rriiGdls~ 78 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKI-LPPPVRKIIGDLSD 78 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhc-CCCCcceeeccccc
Confidence 34566677888899999999999988765 45688888999999999999999999997654 34466677887654
No 229
>PRK09301 circadian clock protein KaiB; Provisional
Probab=94.98 E-value=0.18 Score=33.84 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=61.3
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHh-cCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCH
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEY-AGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPK 158 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~-~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~ 158 (171)
+..++=.|.+..-+..++....+.++.+++ ++...+-.+|+.+++++++.++|-++||++-. .-....++.|.++.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~-~P~P~rriiGDlsd 81 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKI-LPPPVRKIIGDLSD 81 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhc-CCCCcceeeccccc
Confidence 456777788899999999999999998765 45688888999999999999999999997654 34466677887644
No 230
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=94.96 E-value=0.13 Score=31.62 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=38.6
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC-CHhHHHhCCCCcccEEEEEeCCeEE
Q 030784 87 VEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT-DLTIAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 87 V~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~-~~~l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
+.|+..||++|++.+-.+++..-. ..+..+|... .+++.+......+|++.. .+|..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~----~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT----VELREVELKNKPAEMLAASPKGTVPVLVL-GNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC----cEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcEE
Confidence 457789999999987666554333 4455666443 356777777889999954 346543
No 231
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=94.88 E-value=0.12 Score=36.26 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=33.2
Q ss_pred ECCCCHhHHHhCCCCcccEEEEEeCCe-----------EEEEEecCCCHHHHHHHH
Q 030784 121 NTDTDLTIAEDYEIKAVPVVLLFKNGE-----------KRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 121 d~d~~~~l~~~~~i~~~Pt~~~~~~g~-----------~~~~~~G~~~~~~l~~~i 165 (171)
++.-+|.+.++|+|+.+|+|++.+++. ..+...|..+.+.-.+.+
T Consensus 56 ~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~i 111 (130)
T TIGR02742 56 GVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKM 111 (130)
T ss_pred cEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHH
Confidence 334579999999999999999997764 356777877665544433
No 232
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=94.73 E-value=1 Score=31.92 Aligned_cols=92 Identities=5% Similarity=0.091 Sum_probs=62.0
Q ss_pred hcCCCcEEEEEEcCCChhhHHHHHHH---HHHHHHhcCCeEEEEEECCCCH------------------hHHHhCCCCcc
Q 030784 79 LNSDTPVLVEFYASWCGPCRMVHRVI---DEIAGEYAGRLRCFMVNTDTDL------------------TIAEDYEIKAV 137 (171)
Q Consensus 79 ~~~~~~vvV~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~d~~~------------------~l~~~~~i~~~ 137 (171)
.+..|+.+|+.+.+.-..+..+-..+ +++.+-.+++..+..-|+.... ..++.++...+
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f 97 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL 97 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence 34589999999998764443333222 3333333445666677754431 24567889999
Q ss_pred cEEEEE-eC---CeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 138 PVVLLF-KN---GEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 138 Pt~~~~-~~---g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
|.+.++ +. -+++.+..|..+.+++...|...++
T Consensus 98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 998887 22 2677889999999999998887664
No 233
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=94.38 E-value=0.23 Score=30.88 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=42.3
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEe--CCeEEEEEecCCCHHHHHH
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK--NGEKRETVVGTMPKEFYIA 163 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~--~g~~~~~~~G~~~~~~l~~ 163 (171)
+..|+.++|+.|++.+-.+.+..-.| .+..+|.....++ +.-+-..+|++..-. +|+.+ ..-..+.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y----~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l------~eS~~I~~ 70 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPY----EVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL------VDSSVIIS 70 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCce----EEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE------EcHHHHHH
Confidence 45677899999999886665443222 2233333222333 345667899987532 24322 24456777
Q ss_pred HHHHHh
Q 030784 164 AIERVL 169 (171)
Q Consensus 164 ~i~~~l 169 (171)
+|++.|
T Consensus 71 yL~~~~ 76 (77)
T cd03040 71 TLKTYL 76 (77)
T ss_pred HHHHHc
Confidence 777765
No 234
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.24 E-value=0.13 Score=39.44 Aligned_cols=41 Identities=24% Similarity=0.482 Sum_probs=33.6
Q ss_pred HhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 126 LTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 126 ~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
...+++.||+++|+|++ +|+ ..+.|..+.+.+...|++++.
T Consensus 174 ~~~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~~ 214 (225)
T COG2761 174 EAAAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLLA 214 (225)
T ss_pred HHHHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHHh
Confidence 35678899999999988 443 346899999999999999875
No 235
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=94.12 E-value=0.24 Score=33.90 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeC
Q 030784 98 RMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKN 145 (171)
Q Consensus 98 ~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~ 145 (171)
+.....+.++..+.+.. .++.-+|.+.++|+|+.+|++++.++
T Consensus 38 ~~t~~~~~~l~~~~~~~-----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 38 KPTAKAIQELLRKDDPC-----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHhhccCCC-----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 33344445555443321 34455799999999999999998866
No 236
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=94.01 E-value=0.21 Score=29.52 Aligned_cols=56 Identities=14% Similarity=0.035 Sum_probs=36.2
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCH--hHHHhCCCCcccEEEEEeCCeEE
Q 030784 88 EFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL--TIAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 88 ~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~--~l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
.|+.++|+.|++..-.++...-. .....++.++.. ++.+..+-..+|++.. +|..+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~~ 60 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP----YELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLVL 60 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC----cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 57788999999888777655332 334455543332 3566678889998865 56543
No 237
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.18 Score=31.84 Aligned_cols=56 Identities=13% Similarity=0.265 Sum_probs=37.7
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC--------------CCHhH--HHhCCCCcccEEEEEeCCeEE
Q 030784 87 VEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD--------------TDLTI--AEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 87 V~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d--------------~~~~l--~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
+.|++..||.|..+...++++. +.+-.|++. ..+++ ++..|--++|.+.+ .+|+.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence 6799999999998877776654 333444442 23332 45677789999966 566665
No 238
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.39 Score=39.53 Aligned_cols=95 Identities=22% Similarity=0.250 Sum_probs=70.7
Q ss_pred eEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCC
Q 030784 67 AVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNG 146 (171)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g 146 (171)
..++.+-.++.-.-.+...+=-|++-.|..|-.+...|+-++--. .++....+|..--++-.+.-+|..+||+++ ||
T Consensus 101 pk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlN-p~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nG 177 (520)
T COG3634 101 PKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLN-PRIKHTAIDGALFQDEVEARNIMAVPTVFL--NG 177 (520)
T ss_pred CchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcC-CCceeEEecchhhHhHHHhccceecceEEE--cc
Confidence 344444444433345677888889999999999888887666554 468888998777777778889999999877 88
Q ss_pred eEEEEEecCCCHHHHHHHHH
Q 030784 147 EKRETVVGTMPKEFYIAAIE 166 (171)
Q Consensus 147 ~~~~~~~G~~~~~~l~~~i~ 166 (171)
+... .|.++.+++...|.
T Consensus 178 e~fg--~GRmtleeilaki~ 195 (520)
T COG3634 178 EEFG--QGRMTLEEILAKID 195 (520)
T ss_pred hhhc--ccceeHHHHHHHhc
Confidence 7653 67788888776664
No 239
>PHA03075 glutaredoxin-like protein; Provisional
Probab=93.65 E-value=0.14 Score=35.00 Aligned_cols=30 Identities=23% Similarity=0.567 Sum_probs=26.7
Q ss_pred CcEEEEEEcCCChhhHHHHHHHHHHHHHhc
Q 030784 83 TPVLVEFYASWCGPCRMVHRVIDEIAGEYA 112 (171)
Q Consensus 83 ~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~ 112 (171)
|.++|.|..|-|+.|+.....+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 467999999999999999999988888875
No 240
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.59 Score=34.11 Aligned_cols=92 Identities=18% Similarity=0.197 Sum_probs=65.0
Q ss_pred cCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC--------CHh----HHHhCCCC-----------
Q 030784 80 NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT--------DLT----IAEDYEIK----------- 135 (171)
Q Consensus 80 ~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~--------~~~----l~~~~~i~----------- 135 (171)
-.|++++|.=.|+-||.-......|..|.++|.+ .+.++..-|.+ +.+ ++.+|+..
T Consensus 32 yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~f~if~KidVNG 111 (171)
T KOG1651|consen 32 YRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAEFPIFQKIDVNG 111 (171)
T ss_pred hCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCCCCccEeEEecCC
Confidence 3689999999999999999888899999999975 46666666632 222 23444331
Q ss_pred ------------c------------ccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHhcC
Q 030784 136 ------------A------------VPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 171 (171)
Q Consensus 136 ------------~------------~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~~ 171 (171)
. .=-|++-++|+.+.|+.-..+..++...|+++|.+
T Consensus 112 ~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL~~ 171 (171)
T KOG1651|consen 112 DNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLLAQ 171 (171)
T ss_pred CCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHhcC
Confidence 0 11233447999999998777777788888888763
No 241
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=93.52 E-value=0.23 Score=31.09 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=40.2
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC----HhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHH
Q 030784 87 VEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD----LTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYI 162 (171)
Q Consensus 87 V~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~----~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~ 162 (171)
..++.++|++|++.+-.+++.. +.+-.++++.. +++.+..+-..+|+++.-.+|..+ ..-..|.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l------~es~~I~ 70 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQM------FESADIV 70 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC------CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEE------EcHHHHH
Confidence 4567789999998876665553 33333444332 345455566789998542234222 2445566
Q ss_pred HHHHH
Q 030784 163 AAIER 167 (171)
Q Consensus 163 ~~i~~ 167 (171)
++|++
T Consensus 71 ~yL~~ 75 (77)
T cd03041 71 KYLFK 75 (77)
T ss_pred HHHHH
Confidence 66665
No 242
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=92.60 E-value=0.17 Score=33.82 Aligned_cols=33 Identities=9% Similarity=0.142 Sum_probs=24.0
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC
Q 030784 87 VEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD 125 (171)
Q Consensus 87 V~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~ 125 (171)
..|+.++|+.|++....|++. ++.+-.+|+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKE 34 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccC
Confidence 568899999999988666553 356667776553
No 243
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=92.58 E-value=0.45 Score=34.93 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=34.3
Q ss_pred CCCcEEEEEEcCCC-hhhHHHHHHHHHHHHHhc---CCeEEEEEECC
Q 030784 81 SDTPVLVEFYASWC-GPCRMVHRVIDEIAGEYA---GRLRCFMVNTD 123 (171)
Q Consensus 81 ~~~~vvV~f~a~wC-~~C~~~~~~l~~l~~~~~---~~v~~~~vd~d 123 (171)
.||+++|+|.-..| ..|-.....+.++.+.++ .++.++.|.+|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 58999999999999 789888888888877664 35888888876
No 244
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=92.53 E-value=1.6 Score=26.98 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=46.6
Q ss_pred EEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC-CHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHH
Q 030784 89 FYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT-DLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 89 f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~-~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~ 167 (171)
++.++|++|+++.-.++...- ...+..++..+ ..++.+...-..+|++. .+|..+. +-..|.++|++
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~------dS~~I~~yL~~ 69 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT------DSAAIIEYLEE 69 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE------SHHHHHHHHHH
T ss_pred CCcCCChHHHHHHHHHHHcCC----eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe------CHHHHHHHHHH
Confidence 678999999997755543322 25556666544 46777788889999997 4676542 55667777776
Q ss_pred H
Q 030784 168 V 168 (171)
Q Consensus 168 ~ 168 (171)
.
T Consensus 70 ~ 70 (75)
T PF13417_consen 70 R 70 (75)
T ss_dssp H
T ss_pred H
Confidence 5
No 245
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=92.43 E-value=0.074 Score=34.29 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=44.8
Q ss_pred EEcCCChhhHHHHHHHHHHHHHh-cCCeEEEEEECCCCHhHHHhCCCCcccEEE
Q 030784 89 FYASWCGPCRMVHRVIDEIAGEY-AGRLRCFMVNTDTDLTIAEDYEIKAVPVVL 141 (171)
Q Consensus 89 f~a~wC~~C~~~~~~l~~l~~~~-~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~ 141 (171)
|-+..-+..+.....++.+.+++ ++...+-.+|+.+++++++.++|-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 45556667788888999998875 457999999999999999999999999875
No 246
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=92.42 E-value=0.42 Score=29.17 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=32.1
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCe
Q 030784 88 EFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGE 147 (171)
Q Consensus 88 ~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~ 147 (171)
.++.++|++|++.+-.+....-. ...+.++.+......+..+-..+|++.. .+|.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~----~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~ 57 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP----VEQIILQNDDEATPIRMIGAKQVPILEK-DDGS 57 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC----eEEEECCCCchHHHHHhcCCCccCEEEe-CCCe
Confidence 46778999999887666544322 2333444443333344455667898843 3353
No 247
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=92.01 E-value=0.28 Score=29.85 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=36.6
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC----CCHhHHHhCCCCcccEEEEEeCCe
Q 030784 87 VEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD----TDLTIAEDYEIKAVPVVLLFKNGE 147 (171)
Q Consensus 87 V~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d----~~~~l~~~~~i~~~Pt~~~~~~g~ 147 (171)
..|+.++|++|++.+-.+.+..-. .....++.. ..+++.+...-..+|++.. .+|.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~ 61 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID----VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGT 61 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC----ceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCC
Confidence 357778999999988777665433 333445542 2355666677789999965 3443
No 248
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=91.72 E-value=1.6 Score=33.76 Aligned_cols=46 Identities=11% Similarity=0.270 Sum_probs=37.6
Q ss_pred HhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhc----CCeEEEEEECC
Q 030784 78 ILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYA----GRLRCFMVNTD 123 (171)
Q Consensus 78 ~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~----~~v~~~~vd~d 123 (171)
....|+++||-+...+|..|......|+.|..++. .+|.|+.||--
T Consensus 22 ~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 22 LNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred hhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 34468999999999999999999999988886653 25999999853
No 249
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=91.49 E-value=0.87 Score=27.79 Aligned_cols=55 Identities=24% Similarity=0.218 Sum_probs=36.4
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC----CHhHHHhCCCCcccEEEEEeCCe
Q 030784 87 VEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT----DLTIAEDYEIKAVPVVLLFKNGE 147 (171)
Q Consensus 87 V~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~----~~~l~~~~~i~~~Pt~~~~~~g~ 147 (171)
..|+.++|+.|++.+-.+++..-. .....+|..+ .+++.+......+|++.. +|.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~----~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~ 60 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE----LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGF 60 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC----CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCE
Confidence 357889999999877666555333 3345555432 356777777789999953 453
No 250
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=91.40 E-value=0.47 Score=32.40 Aligned_cols=34 Identities=12% Similarity=0.295 Sum_probs=25.5
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCH
Q 030784 87 VEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL 126 (171)
Q Consensus 87 V~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~ 126 (171)
..|+.++|+.|++....|++- ++.+..+|+.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCCCh
Confidence 467899999999988766652 3677788876654
No 251
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=91.36 E-value=0.21 Score=36.96 Aligned_cols=38 Identities=32% Similarity=0.573 Sum_probs=30.0
Q ss_pred CHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHH
Q 030784 125 DLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIE 166 (171)
Q Consensus 125 ~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~ 166 (171)
+...+.++||.++|++++ +|+. ...|..+.+.+.+.|+
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i~ 201 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQALR 201 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHhC
Confidence 356778899999999988 7653 3689999998887663
No 252
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=90.90 E-value=1.1 Score=35.01 Aligned_cols=58 Identities=10% Similarity=0.190 Sum_probs=39.5
Q ss_pred HhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCC-CCcccEEEEE
Q 030784 78 ILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYE-IKAVPVVLLF 143 (171)
Q Consensus 78 ~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~-i~~~Pt~~~~ 143 (171)
+...||+.|++..+.||+.|-...=.|-....+|+. +.+....-|. ++ --.+|++++.
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn-~~l~~~~S~~-------~d~~pn~Ptl~F~ 112 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN-FSLEYHYSDP-------YDNYPNTPTLIFN 112 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCC-eeeEEeecCc-------ccCCCCCCeEEEe
Confidence 346799999999999999999888666666667775 4333332222 11 1367887765
No 253
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=90.82 E-value=3.6 Score=27.63 Aligned_cols=91 Identities=9% Similarity=0.099 Sum_probs=56.0
Q ss_pred chhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEe-----
Q 030784 70 TKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFK----- 144 (171)
Q Consensus 70 ~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~----- 144 (171)
+.++++..+...++.+||-|+..--+ .....+.+++..+.+...|+... +.++.+++++. .|.+++|+
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~~~ 79 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEKFQ 79 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEECcHHHh
Confidence 34556555544436666666655433 35567888999987768775553 34788888886 45566662
Q ss_pred --CCeEEEEEecC-CCHHH-HHHHHHH
Q 030784 145 --NGEKRETVVGT-MPKEF-YIAAIER 167 (171)
Q Consensus 145 --~g~~~~~~~G~-~~~~~-l~~~i~~ 167 (171)
=.+....+.|. .+.+. |..||++
T Consensus 80 ~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 80 SKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred hhcCcceeeeeccccchHHHHHHHHhc
Confidence 22333445666 45544 8888864
No 254
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=90.62 E-value=0.95 Score=27.50 Aligned_cols=69 Identities=13% Similarity=0.062 Sum_probs=41.0
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC-CHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHH
Q 030784 87 VEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT-DLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 87 V~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~-~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 165 (171)
..|+.++|+.|++..-.+++..-.| ....+|.+. .+++.+......+|++. .+|..+ ..-..|.++|
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~----~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l------~es~aI~~yL 69 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSV----EIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLVL------YESRIIMEYL 69 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCcc----EEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEEE------EcHHHHHHHH
Confidence 4577889999999887765544332 333445433 34666666778999774 355322 2334455555
Q ss_pred HH
Q 030784 166 ER 167 (171)
Q Consensus 166 ~~ 167 (171)
++
T Consensus 70 ~~ 71 (73)
T cd03059 70 DE 71 (73)
T ss_pred Hh
Confidence 54
No 255
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=90.07 E-value=0.64 Score=32.55 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=23.7
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD 125 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~ 125 (171)
+..|+.+||+.|++....|++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCC
Confidence 4578899999999977665443 255666666544
No 256
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=90.05 E-value=0.54 Score=31.84 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=24.3
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC
Q 030784 87 VEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD 125 (171)
Q Consensus 87 V~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~ 125 (171)
..|+.++|+.|++....|++- ++.|-.+|+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCC
Confidence 468899999999988666552 366777777654
No 257
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=89.85 E-value=3 Score=31.30 Aligned_cols=87 Identities=18% Similarity=0.215 Sum_probs=56.2
Q ss_pred CCcEEEEEE-cCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECC----------------------------CCHhHHHh
Q 030784 82 DTPVLVEFY-ASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTD----------------------------TDLTIAED 131 (171)
Q Consensus 82 ~~~vvV~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d----------------------------~~~~l~~~ 131 (171)
++.+|++|| ++.-..|--....+.+..+++.. ++.++.+.+| .+.++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 488888888 66678887777777777777753 4777777774 34578899
Q ss_pred CCCCccc-------EEEEEeCCeEEEEEec----CCCHHHHHHHHHHH
Q 030784 132 YEIKAVP-------VVLLFKNGEKRETVVG----TMPKEFYIAAIERV 168 (171)
Q Consensus 132 ~~i~~~P-------t~~~~~~g~~~~~~~G----~~~~~~l~~~i~~~ 168 (171)
||+-.-. +|++-.+|.+.+...- .++.+++...|+.+
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 9875321 3444367877664332 23556666555543
No 258
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=89.75 E-value=4.9 Score=27.55 Aligned_cols=87 Identities=9% Similarity=0.051 Sum_probs=54.4
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEEC-CCC-----------HhHHHhCCCCccc-EEEEE-eCC
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNT-DTD-----------LTIAEDYEIKAVP-VVLLF-KNG 146 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~-d~~-----------~~l~~~~~i~~~P-t~~~~-~~g 146 (171)
++++||.-=+..-+.=+.+...|.+-...+.+ ++.++.+-. ... ..+.++|++..-. +++++ ++|
T Consensus 10 ~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG 89 (118)
T PF13778_consen 10 NRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDG 89 (118)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCC
Confidence 44433322244566667777777775545544 355555532 222 2788899976433 34444 899
Q ss_pred eEEEEEecCCCHHHHHHHHHHH
Q 030784 147 EKRETVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 147 ~~~~~~~G~~~~~~l~~~i~~~ 168 (171)
.+-.++....+.+.+-..|+.+
T Consensus 90 ~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 90 GVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred cEEEecCCCCCHHHHHHHHhCC
Confidence 8888888999999998888753
No 259
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=89.64 E-value=0.57 Score=31.50 Aligned_cols=41 Identities=5% Similarity=0.033 Sum_probs=27.8
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCH-------hHHHhCC
Q 030784 87 VEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL-------TIAEDYE 133 (171)
Q Consensus 87 V~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~-------~l~~~~~ 133 (171)
..|+.+||+.|++....|++- ++.+-.+|+.+++ .+.+++|
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 568899999999987666443 3666677765542 4555555
No 260
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=89.54 E-value=0.63 Score=31.32 Aligned_cols=57 Identities=28% Similarity=0.503 Sum_probs=38.5
Q ss_pred EEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCC--cccEEEE-EeCCe
Q 030784 89 FYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIK--AVPVVLL-FKNGE 147 (171)
Q Consensus 89 f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~--~~Pt~~~-~~~g~ 147 (171)
||..+|+.|......+.+... .+.+.++.+..+...++.+.+++. ..-..+. .++|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 799999999998887777622 234666666545556666778875 3444444 46776
No 261
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=89.20 E-value=0.45 Score=34.83 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=27.6
Q ss_pred HhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHH
Q 030784 126 LTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 126 ~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 165 (171)
...+.++||.++|++++ +|+ .+.|....+.+.+.|
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 46677899999999988 775 457888888777665
No 262
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.13 E-value=0.84 Score=34.32 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=36.1
Q ss_pred HhHHHhCCCCcccEEEEEeCCeEEEEEec--CCCHHHHHHHHHHHhc
Q 030784 126 LTIAEDYEIKAVPVVLLFKNGEKRETVVG--TMPKEFYIAAIERVLK 170 (171)
Q Consensus 126 ~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G--~~~~~~l~~~i~~~l~ 170 (171)
..+++++++.++||+++-++|+..-.-.| ....+.+..++++.+.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 45788999999999999999988776667 4566888888877664
No 263
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=89.08 E-value=2 Score=27.59 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=35.0
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC-HhHHHhCCCCcccEEEE
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD-LTIAEDYEIKAVPVVLL 142 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~-~~l~~~~~i~~~Pt~~~ 142 (171)
+..|+.+.|++|++..-.+++..-. ..+..++.++. .++.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~----~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP----HEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC----CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 4556788899999887666554322 44455555443 34666667788999975
No 264
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=88.64 E-value=3.6 Score=28.60 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=33.1
Q ss_pred CeEEEEEECCCCH----------hHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHH
Q 030784 114 RLRCFMVNTDTDL----------TIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIE 166 (171)
Q Consensus 114 ~v~~~~vd~d~~~----------~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~ 166 (171)
.+.+.+.|..+++ ++.++.|...+|.+++ ||+++. ...+.+.+++.+|+.
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~-~G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVK-TGRYPTNEELAEWLG 99 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEE-ESS---HHHHHHHHT
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEE-ecCCCCHHHHHHHhC
Confidence 5999999998775 3455679999999988 998775 344668888888865
No 265
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=87.27 E-value=0.99 Score=33.05 Aligned_cols=31 Identities=26% Similarity=0.598 Sum_probs=26.4
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeE
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLR 116 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~ 116 (171)
|.+|+.+.|+.|-...+.++++.+++++++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~ 33 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGIE 33 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCCce
Confidence 6788999999999999999999999853333
No 266
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=86.36 E-value=1.4 Score=26.59 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=35.5
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC----CCHhHHHhCCCCcccEEEEEeCCeEE
Q 030784 88 EFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD----TDLTIAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 88 ~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d----~~~~l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
.|+.++|+.|++.+-.+++..-+ .....++.. ...++.+...-..+|++.. +|..+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~----~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i 62 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIP----YEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVL 62 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC----cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEE
Confidence 57788999999887666655433 334455542 2345555566778999865 56443
No 267
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=86.19 E-value=1.8 Score=29.42 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=24.2
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD 125 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~ 125 (171)
+..|+.++|+.|++....|++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 4467889999999988666553 256667776544
No 268
>PRK12559 transcriptional regulator Spx; Provisional
Probab=85.74 E-value=1.4 Score=30.81 Aligned_cols=34 Identities=18% Similarity=0.360 Sum_probs=23.0
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD 125 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~ 125 (171)
+..|+.++|+.|++....|++- ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeCC
Confidence 5678899999999977655443 255556665433
No 269
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=84.83 E-value=2.2 Score=32.31 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=28.7
Q ss_pred CHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHH
Q 030784 125 DLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYI 162 (171)
Q Consensus 125 ~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~ 162 (171)
+|.+.++|+|+.+|+|++.. +...+.+.|..+.+.-.
T Consensus 151 DP~lF~~F~I~~VPafVv~C-~~~yD~I~GNIsl~~AL 187 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFC-SQGYDIIRGNLRVGQAL 187 (212)
T ss_pred CHHHHHhcCCccccEEEEEc-CCCCCEEEecccHHHHH
Confidence 68999999999999999974 44567788877665433
No 270
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=83.55 E-value=5.3 Score=24.57 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=36.5
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC----CCHhHHHhCCCCcccEEEEEeCCeE
Q 030784 87 VEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD----TDLTIAEDYEIKAVPVVLLFKNGEK 148 (171)
Q Consensus 87 V~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d----~~~~l~~~~~i~~~Pt~~~~~~g~~ 148 (171)
..|+.+.|+.|++++-.+++..-. ..+..+|.. ..+++.+--.-..+|++. .+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~----~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLR----CEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCC----CEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 467788999998887555544332 445566652 234577777778999985 36654
No 271
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=83.39 E-value=8.4 Score=28.40 Aligned_cols=86 Identities=16% Similarity=0.175 Sum_probs=46.0
Q ss_pred CCCcEEEEEE-cCCChhhHHH----HHHHHHHHHHhcCCeEEEEEECC---------------------CCHhHHHhCCC
Q 030784 81 SDTPVLVEFY-ASWCGPCRMV----HRVIDEIAGEYAGRLRCFMVNTD---------------------TDLTIAEDYEI 134 (171)
Q Consensus 81 ~~~~vvV~f~-a~wC~~C~~~----~~~l~~l~~~~~~~v~~~~vd~d---------------------~~~~l~~~~~i 134 (171)
.+++||++|| +..-+-|.+. +..++++.+.+ ..++.+..| ...++.+.+|+
T Consensus 89 ~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~---aeV~GlS~D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~lGa 165 (211)
T KOG0855|consen 89 GNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG---AEVIGLSGDDSASQKAFASKQNLPYHLLSDPKNEVIKDLGA 165 (211)
T ss_pred CCCcEEEEEeccCCCCCcccccccccccHHHHhhcC---ceEEeeccCchHHHHHhhhhccCCeeeecCcchhHHHHhCC
Confidence 4568888888 3344555544 44455555543 334555544 33466677777
Q ss_pred Cccc--------EEEEEeCCeEEEEEecC-CCHHHHHHHHHHHh
Q 030784 135 KAVP--------VVLLFKNGEKRETVVGT-MPKEFYIAAIERVL 169 (171)
Q Consensus 135 ~~~P--------t~~~~~~g~~~~~~~G~-~~~~~l~~~i~~~l 169 (171)
..-| ++++.++|.+...+.-. .++-.+.+.++.++
T Consensus 166 ~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~~ 209 (211)
T KOG0855|consen 166 PKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFLK 209 (211)
T ss_pred CCCCCCCcccceEEEEecCCeEEEEEecccCccccHHHHHHHHh
Confidence 6544 45555665554444333 34444555555443
No 272
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=83.18 E-value=17 Score=27.48 Aligned_cols=78 Identities=23% Similarity=0.400 Sum_probs=49.0
Q ss_pred EEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC------------------CHhHHHhCCCC--cccEEEEEe
Q 030784 85 VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT------------------DLTIAEDYEIK--AVPVVLLFK 144 (171)
Q Consensus 85 vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~------------------~~~l~~~~~i~--~~Pt~~~~~ 144 (171)
||=.|.+.-|..|-.....|.+|+.+ + +|..+...+|- ....++.++.+ .+|-+++
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~-~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV-- 76 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR-P-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV-- 76 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH-T-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC-C-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--
Confidence 34567788999999999999999999 3 46666665541 13455566655 4688877
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHHh
Q 030784 145 NGEKRETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 145 ~g~~~~~~~G~~~~~~l~~~i~~~l 169 (171)
||... ..| .....+...|++..
T Consensus 77 nG~~~--~~g-~~~~~~~~ai~~~~ 98 (202)
T PF06764_consen 77 NGREH--RVG-SDRAAVEAAIQAAR 98 (202)
T ss_dssp TTTEE--EET-T-HHHHHHHHHHHH
T ss_pred CCeee--eec-cCHHHHHHHHHHhh
Confidence 88664 234 46677777777654
No 273
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=82.88 E-value=6.3 Score=26.68 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=36.8
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCC
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDT 124 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~ 124 (171)
+|++++|.=.|+.|+.-. ....|++|.++|.+ .+.++..-+++
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 589999999999999999 78899999999984 58888877753
No 274
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.41 E-value=7.8 Score=25.97 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=38.1
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCC-CCcccEEE-EEeCCeEEE
Q 030784 92 SWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYE-IKAVPVVL-LFKNGEKRE 150 (171)
Q Consensus 92 ~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~-i~~~Pt~~-~~~~g~~~~ 150 (171)
|-||...+....|... +. +.|..+|+-+++++.+..+ ...+|||= +|-+|+.++
T Consensus 28 P~CGFS~~~vqiL~~~----g~-v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvG 83 (105)
T COG0278 28 PQCGFSAQAVQILSAC----GV-VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVG 83 (105)
T ss_pred CCCCccHHHHHHHHHc----CC-cceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEec
Confidence 5788888776555433 33 7899999988999877664 45677764 456887664
No 275
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=80.32 E-value=2.7 Score=34.30 Aligned_cols=57 Identities=16% Similarity=0.352 Sum_probs=47.0
Q ss_pred CeEEEEEECCCCHhHHHhCCCCcccEEEEE--eCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 114 RLRCFMVNTDTDLTIAEDYEIKAVPVVLLF--KNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 114 ~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~--~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
.+..+..|..+...+..=|.+..+|.+.++ ..|+.+.+..|..+.+++...+++.+.
T Consensus 132 ~wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~ 190 (356)
T KOG1364|consen 132 RWLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFID 190 (356)
T ss_pred eEEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHh
Confidence 355557777788899999999999988888 589999999999888888888877664
No 276
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=78.81 E-value=4.7 Score=28.24 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=22.9
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD 125 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~ 125 (171)
+..|+.++|+.|++....|++- ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc------CCCeEEEECCCC
Confidence 4567889999999977555432 366666776543
No 277
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=78.05 E-value=2.2 Score=31.18 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=18.3
Q ss_pred HhHHHhCCCCcccEEEEEeCCe
Q 030784 126 LTIAEDYEIKAVPVVLLFKNGE 147 (171)
Q Consensus 126 ~~l~~~~~i~~~Pt~~~~~~g~ 147 (171)
...+.++||.++|++++..++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 4667789999999999987665
No 278
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=77.91 E-value=24 Score=25.66 Aligned_cols=42 Identities=10% Similarity=0.257 Sum_probs=29.3
Q ss_pred hHHHhCCCCcc-cEEEEE-eCCeEEEEEecCCCHHHHHHHHHHH
Q 030784 127 TIAEDYEIKAV-PVVLLF-KNGEKRETVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 127 ~l~~~~~i~~~-Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~ 168 (171)
.+.+.++...- -.++++ ++|+......|.++.+++.++|+=+
T Consensus 114 ~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll 157 (160)
T PF09695_consen 114 VVRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIALL 157 (160)
T ss_pred ceeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHHH
Confidence 34444554433 345555 7999999999999999988887643
No 279
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=77.21 E-value=31 Score=28.01 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=56.0
Q ss_pred eeecCCeeEechhh-HHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhC-CCCcc
Q 030784 60 LCVRESRAVVTKDS-WEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDY-EIKAV 137 (171)
Q Consensus 60 ~~~~~~~~~l~~~~-~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~-~i~~~ 137 (171)
.|.......++.++ ....+.+++++.+|+|...-- |.++++.+....++.+.+.- ....+++-.+ ..+..
T Consensus 130 R~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~-------PL~d~fidAASe~~~~a~Ff-SaseeVaPe~~~~kem 201 (468)
T KOG4277|consen 130 RCAAAIIEPINENQIEFEHLQARHQPFFVFFGTGEG-------PLFDAFIDAASEKFSVARFF-SASEEVAPEENDAKEM 201 (468)
T ss_pred hcccceeeecChhHHHHHHHhhccCceEEEEeCCCC-------cHHHHHHHHhhhheeeeeee-ccccccCCcccchhhc
Confidence 34444455666544 334566778999998886543 33444433333334333332 2233444333 46788
Q ss_pred cEEEEEeCCeEEEEEecCCCHHHHHHHHHH
Q 030784 138 PVVLLFKNGEKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 138 Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~ 167 (171)
|.+.+|++........| ..+++.+||.+
T Consensus 202 paV~VFKDetf~i~de~--dd~dLseWinR 229 (468)
T KOG4277|consen 202 PAVAVFKDETFEIEDEG--DDEDLSEWINR 229 (468)
T ss_pred cceEEEccceeEEEecC--chhHHHHHHhH
Confidence 99999988754433333 56778888875
No 280
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=75.16 E-value=13 Score=29.46 Aligned_cols=82 Identities=18% Similarity=0.090 Sum_probs=46.8
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC-----CHhHHHhCCC-CcccEEEEEeCCeEEEEEecC
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT-----DLTIAEDYEI-KAVPVVLLFKNGEKRETVVGT 155 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~-----~~~l~~~~~i-~~~Pt~~~~~~g~~~~~~~G~ 155 (171)
.....|..|+..|..=..+.|. ++..+=++.+..--.|+ ++.+...|+. .+++.+..+-=|.+.- +.+.
T Consensus 74 ~~t~~IR~Y~sDCn~le~v~pA----a~~~g~kv~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~VGnEal-~r~~ 148 (305)
T COG5309 74 SYTHSIRTYGSDCNTLENVLPA----AEASGFKVFLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVTVGNEAL-NRND 148 (305)
T ss_pred cCCceEEEeeccchhhhhhHHH----HHhcCceEEEEEeeccchhhhHHHHHHHHHhccCCCCceEEEEechhhh-hcCC
Confidence 4445899999776554443333 33333233333322222 2356666665 4678777665454432 4677
Q ss_pred CCHHHHHHHHHHH
Q 030784 156 MPKEFYIAAIERV 168 (171)
Q Consensus 156 ~~~~~l~~~i~~~ 168 (171)
.+.+++.+.|.+.
T Consensus 149 ~tasql~~~I~~v 161 (305)
T COG5309 149 LTASQLIEYIDDV 161 (305)
T ss_pred CCHHHHHHHHHHH
Confidence 8999999888764
No 281
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=74.63 E-value=8.3 Score=24.72 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=41.1
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHH
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 165 (171)
+....+.-+-.|.- .|++++..+++ ...+-+..+.+.-+.. ..-.++.+|..|+.+ ..|..+.+++.+.+
T Consensus 6 i~NIva~~~l~~~i---dL~~la~~~~~----~~YePe~fpgl~~r~~-~p~~t~~IF~sGki~--itGaks~~~~~~a~ 75 (86)
T PF00352_consen 6 IVNIVASFDLPFEI---DLEELAEELEN----VEYEPERFPGLIYRLR-NPKATVLIFSSGKIV--ITGAKSEEEAKKAI 75 (86)
T ss_dssp EEEEEEEEE-SSEB----HHHHHHHSTT----EEEETTTESSEEEEET-TTTEEEEEETTSEEE--EEEESSHHHHHHHH
T ss_pred EEEEEEEEECCCcc---CHHHHHhhccC----cEEeeccCCeEEEeec-CCcEEEEEEcCCEEE--EEecCCHHHHHHHH
Confidence 34444444444432 45566666532 2333333333221111 224688899999887 57888888888888
Q ss_pred HHHhc
Q 030784 166 ERVLK 170 (171)
Q Consensus 166 ~~~l~ 170 (171)
+++++
T Consensus 76 ~~i~~ 80 (86)
T PF00352_consen 76 EKILP 80 (86)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 282
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=73.66 E-value=25 Score=26.78 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=51.0
Q ss_pred HHHHHhcCCCcEEEEEE-----cCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECCCC---------------------H
Q 030784 74 WEKSILNSDTPVLVEFY-----ASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTDTD---------------------L 126 (171)
Q Consensus 74 ~~~~~~~~~~~vvV~f~-----a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d~~---------------------~ 126 (171)
+.+++....+.+|..|. ..-|+-|-.+...++.....+.. ++.|+.|.-.-- .
T Consensus 60 L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~gs 139 (211)
T PF05988_consen 60 LADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSYGS 139 (211)
T ss_pred HHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcCCC
Confidence 44445555667777775 44599999999999665555554 388888875322 2
Q ss_pred hHHHhCCC-----CcccEEEEE-e-CCeEEEEEe
Q 030784 127 TIAEDYEI-----KAVPVVLLF-K-NGEKRETVV 153 (171)
Q Consensus 127 ~l~~~~~i-----~~~Pt~~~~-~-~g~~~~~~~ 153 (171)
.+...|++ ...|.+-+| + +|++.+.+.
T Consensus 140 ~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhTys 173 (211)
T PF05988_consen 140 DFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHTYS 173 (211)
T ss_pred cccccccceeccCCCceeEEEEEEcCCEEEEEee
Confidence 34445666 577888777 4 455555543
No 283
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=73.35 E-value=24 Score=25.00 Aligned_cols=67 Identities=22% Similarity=0.329 Sum_probs=48.3
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcc-c-EEEEEeCCeEE
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAV-P-VVLLFKNGEKR 149 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~-P-t~~~~~~g~~~ 149 (171)
-+++-.|.+|.-.|+.|......|.+.- -+..+.|..+..+....+.+.+++..- + ++.+.++|+..
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D--~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~ 73 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRD--QGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLL 73 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhc--cCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceE
Confidence 3567788999999999998665554432 234588888888888889888888654 3 45555677554
No 284
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=73.14 E-value=31 Score=25.64 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=39.0
Q ss_pred CCCcEEEEEE-cCCChhhHHHHHHHHHHHHHhcC-CeEEEEEEC----------------------------CCCHhHHH
Q 030784 81 SDTPVLVEFY-ASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNT----------------------------DTDLTIAE 130 (171)
Q Consensus 81 ~~~~vvV~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~----------------------------d~~~~l~~ 130 (171)
.++.|++.|| -++--.|--..-.+-+.++++.. +..++.+.+ |.+.++++
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isr 111 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISR 111 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHH
Confidence 3688888888 44544454434444444544432 233344433 45678999
Q ss_pred hCCCC----ccc---EEEEEeCCeEEE
Q 030784 131 DYEIK----AVP---VVLLFKNGEKRE 150 (171)
Q Consensus 131 ~~~i~----~~P---t~~~~~~g~~~~ 150 (171)
+||+- +.+ .+++..+|-...
T Consensus 112 dyGvL~~~~G~~lRglfIId~~gi~R~ 138 (196)
T KOG0852|consen 112 DYGVLKEDEGIALRGLFIIDPDGILRQ 138 (196)
T ss_pred hcCceecCCCcceeeeEEEccccceEE
Confidence 99983 555 333335665443
No 285
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=72.63 E-value=11 Score=22.89 Aligned_cols=57 Identities=14% Similarity=0.050 Sum_probs=35.3
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC----CCHhHHHhCCCCcccEEEEEeCCeE
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD----TDLTIAEDYEIKAVPVVLLFKNGEK 148 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d----~~~~l~~~~~i~~~Pt~~~~~~g~~ 148 (171)
+..|+.+.|+.|++..-.+++..-. .....++.. ..+++.+......+|++.. +|..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~----~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~ 62 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD----YELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLK 62 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC----cEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEE
Confidence 3445566799999888766654433 334444432 2356677777889998753 5543
No 286
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=72.21 E-value=55 Score=27.08 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=64.5
Q ss_pred eEechhhHHHHHhc-CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC--CeEEEEEECCCCHhHH----HhCCCC-ccc
Q 030784 67 AVVTKDSWEKSILN-SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG--RLRCFMVNTDTDLTIA----EDYEIK-AVP 138 (171)
Q Consensus 67 ~~l~~~~~~~~~~~-~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~d~~~~l~----~~~~i~-~~P 138 (171)
+.++.+++.+.=.. -+...+|.|-..--+.-..+..+++++++...+ .+.+++||-|+-|-+. +.|+|. .-|
T Consensus 252 rkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~~P 331 (383)
T PF01216_consen 252 RKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLSRP 331 (383)
T ss_dssp EE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TTS-
T ss_pred hhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCccccCC
Confidence 56666664433322 356788889889999999999999999998753 5999999999987664 456764 348
Q ss_pred EEEEEe--CCeEEEE-Ee---cCCCHHHHHHHHHHHhc
Q 030784 139 VVLLFK--NGEKRET-VV---GTMPKEFYIAAIERVLK 170 (171)
Q Consensus 139 t~~~~~--~g~~~~~-~~---G~~~~~~l~~~i~~~l~ 170 (171)
.+-++. +..-+.. .. ...+.+.+.+||+.+|.
T Consensus 332 qIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVls 369 (383)
T PF01216_consen 332 QIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLS 369 (383)
T ss_dssp EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHC
T ss_pred ceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhc
Confidence 888773 3333332 11 23477899999999874
No 287
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=68.92 E-value=5.6 Score=29.81 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=25.4
Q ss_pred hHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHH
Q 030784 127 TIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 127 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 165 (171)
+.+.+.||.++|+|++-.++..-..+.|.--.+.+.+.|
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHh
Confidence 455678999999998854222223577776666665554
No 288
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=67.04 E-value=16 Score=27.14 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=39.8
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC-CHhHHHhCCCCcccEEEEEeCCeEE
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT-DLTIAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~-~~~l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
++...+..|+.++|+.|+++.=.+++..- ...+..+|.+. .+++.+..--..+|++.. +|..+
T Consensus 6 ~~~~~~~Ly~~~~s~~~~rv~~~L~e~gl----~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~--~g~~l 69 (211)
T PRK09481 6 NKRSVMTLFSGPTDIYSHQVRIVLAEKGV----SVEIEQVEKDNLPQDLIDLNPYQSVPTLVD--RELTL 69 (211)
T ss_pred CCCCeeEEeCCCCChhHHHHHHHHHHCCC----CCEEEeCCcccCCHHHHHhCCCCCCCEEEE--CCEEe
Confidence 34445556667789999998866655432 24455666543 346666666788999963 56443
No 289
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=66.91 E-value=55 Score=25.03 Aligned_cols=66 Identities=11% Similarity=0.067 Sum_probs=42.4
Q ss_pred CChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhH-HHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 93 WCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTI-AEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 93 wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l-~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
.|+.|+++.-.|. .+.. ...+..||....++- .+-..-..+|.+.+ +|+. ..+.+.++++|++.+.
T Consensus 20 dcpf~qr~~m~L~---~k~~-~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~~------~tDs~~Ie~~Lee~l~ 86 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV-PFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEKW------VTDSDKIEEFLEEKLP 86 (221)
T ss_pred CChhHHHHHHHHH---HcCC-CceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCce------eccHHHHHHHHHHhcC
Confidence 4777776655544 3322 477888998766554 46667778887766 5533 3456677778877653
No 290
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=66.74 E-value=23 Score=29.23 Aligned_cols=76 Identities=22% Similarity=0.223 Sum_probs=43.5
Q ss_pred ChhhHH-HHHHHHHHHHHhcC---CeEEEEEECC-CCHh--HHHhCCCCcc-cEEEEEeCCeEEEEEecCCCHHHHHHHH
Q 030784 94 CGPCRM-VHRVIDEIAGEYAG---RLRCFMVNTD-TDLT--IAEDYEIKAV-PVVLLFKNGEKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 94 C~~C~~-~~~~l~~l~~~~~~---~v~~~~vd~d-~~~~--l~~~~~i~~~-Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 165 (171)
|+.|.. ......++.+.+.+ .+.+...-|- +.+. -..++||-+- +..++|++|+.+..+.+..-.+.+.+.|
T Consensus 274 CgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~~~i 353 (360)
T PRK00366 274 CGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELEAEI 353 (360)
T ss_pred CCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHHHHH
Confidence 555432 22334445555543 3666665563 4433 3346777654 4678889999998876655555566666
Q ss_pred HHHh
Q 030784 166 ERVL 169 (171)
Q Consensus 166 ~~~l 169 (171)
+++.
T Consensus 354 ~~~~ 357 (360)
T PRK00366 354 EAYA 357 (360)
T ss_pred HHHH
Confidence 5554
No 291
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=65.91 E-value=44 Score=23.53 Aligned_cols=99 Identities=19% Similarity=0.212 Sum_probs=51.8
Q ss_pred chhhHHHHHhcCCCcEEEEEEcCCChhhH-HHHHHHHHHHHHhcCCeEEEEEECCCCH---hHHHhCCCC---cccEEEE
Q 030784 70 TKDSWEKSILNSDTPVLVEFYASWCGPCR-MVHRVIDEIAGEYAGRLRCFMVNTDTDL---TIAEDYEIK---AVPVVLL 142 (171)
Q Consensus 70 ~~~~~~~~~~~~~~~vvV~f~a~wC~~C~-~~~~~l~~l~~~~~~~v~~~~vd~d~~~---~l~~~~~i~---~~Pt~~~ 142 (171)
|.++.++.+.+.....+| +..+-||=-- ..+|-.......-...=+++.|=...++ +-++.|-.. +-|.+.+
T Consensus 23 T~e~Vd~~~~~~~GTtlV-vVNSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~~~pPSSPS~AL 101 (136)
T PF06491_consen 23 TAEEVDEALKNKEGTTLV-VVNSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFEPYPPSSPSIAL 101 (136)
T ss_dssp SHHHHHHHHHH--SEEEE-EEE-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTSTTS---SSEEEE
T ss_pred CHHHHHHHHhCCCCcEEE-EEeccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcCCCCCCCchhee
Confidence 667787777645555555 4456776222 2234433322221111334555544443 345555433 4579999
Q ss_pred EeCCeEEEEEec----CCCHHHHHHHHHHHh
Q 030784 143 FKNGEKRETVVG----TMPKEFYIAAIERVL 169 (171)
Q Consensus 143 ~~~g~~~~~~~G----~~~~~~l~~~i~~~l 169 (171)
||+|+.++.+.. .++.+.|.+-|....
T Consensus 102 fKdGelvh~ieRh~IEGr~a~~Ia~~L~~af 132 (136)
T PF06491_consen 102 FKDGELVHFIERHHIEGRPAEEIAENLQDAF 132 (136)
T ss_dssp EETTEEEEEE-GGGTTTS-HHHHHHHHHHHH
T ss_pred eeCCEEEEEeehhhcCCCCHHHHHHHHHHHH
Confidence 999999997652 246677777666554
No 292
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=63.01 E-value=12 Score=25.46 Aligned_cols=32 Identities=3% Similarity=0.028 Sum_probs=21.5
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD 123 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d 123 (171)
+..|+.+.|..|++....|++- ++.+-.+|+-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~------gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA------GHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEeehh
Confidence 4568899999999877655443 2555555553
No 293
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=60.98 E-value=33 Score=28.11 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=46.3
Q ss_pred ChhhHHHH----HHHHHHHHHhcC---CeEEEEEECC-CCHh--HHHhCCCCc--ccEEEEEeCCeEEEEEecCCCHHHH
Q 030784 94 CGPCRMVH----RVIDEIAGEYAG---RLRCFMVNTD-TDLT--IAEDYEIKA--VPVVLLFKNGEKRETVVGTMPKEFY 161 (171)
Q Consensus 94 C~~C~~~~----~~l~~l~~~~~~---~v~~~~vd~d-~~~~--l~~~~~i~~--~Pt~~~~~~g~~~~~~~G~~~~~~l 161 (171)
||.|-+.. ..++++.+.+.. .+.+..+-|- +.+. --..+||.+ -|...+|++|+++.+..+..-.+++
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~eel 343 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEEL 343 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHHH
Confidence 77775544 334444444432 2444443332 2222 223566653 5888899999999988777777777
Q ss_pred HHHHHHHhc
Q 030784 162 IAAIERVLK 170 (171)
Q Consensus 162 ~~~i~~~l~ 170 (171)
...++++.+
T Consensus 344 ~~~i~~~~~ 352 (361)
T COG0821 344 EALIEAYAE 352 (361)
T ss_pred HHHHHHHHH
Confidence 777776654
No 294
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=59.55 E-value=69 Score=24.64 Aligned_cols=70 Identities=16% Similarity=0.291 Sum_probs=45.9
Q ss_pred EEEcCCChhhHHHHHHHHHHHHH-hcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHH
Q 030784 88 EFYASWCGPCRMVHRVIDEIAGE-YAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIE 166 (171)
Q Consensus 88 ~f~a~wC~~C~~~~~~l~~l~~~-~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~ 166 (171)
.|....|..|..+...+ .++ +-++|. .++....+.++-+-+|-++|.+++ ||+.+ +.+..+.+.+...++
T Consensus 15 I~~HktC~ssy~Lf~~L---~nkgll~~Vk--ii~a~~p~f~~~~~~V~SvP~Vf~--DGel~--~~dpVdp~~ies~~~ 85 (265)
T COG5494 15 IFTHKTCVSSYMLFEYL---ENKGLLGKVK--IIDAELPPFLAFEKGVISVPSVFI--DGELV--YADPVDPEEIESILS 85 (265)
T ss_pred EEEecchHHHHHHHHHH---HhcCCCCCce--EEEcCCChHHHhhcceeecceEEE--cCeEE--EcCCCCHHHHHHHHc
Confidence 35566788887755444 322 112354 456677788888889999999866 99876 355666666666554
No 295
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=59.09 E-value=34 Score=25.92 Aligned_cols=41 Identities=20% Similarity=0.388 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEE
Q 030784 104 IDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRE 150 (171)
Q Consensus 104 l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 150 (171)
+.++.+.++..+. +|.+..|.++|+|+.+|.++. .+|+...
T Consensus 158 ~~~l~~~l~~~vY-----fdQ~g~Lt~rF~I~~VPavV~-q~g~~l~ 198 (202)
T TIGR02743 158 VNELEKRLDSRIY-----FDQHGKLTQKFGIKHVPARVS-QEGLRLR 198 (202)
T ss_pred HHHHHHHhCCceE-----EcCCchHhhccCceeeceEEE-ecCCEEE
Confidence 4566666654333 366778999999999999975 6666543
No 296
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=58.66 E-value=30 Score=23.71 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=22.7
Q ss_pred HHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHH
Q 030784 128 IAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 128 l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~ 167 (171)
-+-.|||+.+|.++| |++.+ +.|..+...-...+++
T Consensus 75 ~Aw~lgi~k~PAVVf--D~~~V--VYG~tDV~~A~~~~~~ 110 (114)
T PF07511_consen 75 DAWSLGITKYPAVVF--DDRYV--VYGETDVARALARIEQ 110 (114)
T ss_pred HHHHhCccccCEEEE--cCCeE--EecccHHHHHHHHHHH
Confidence 455789999999988 45444 4565555444444443
No 297
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=58.49 E-value=9.1 Score=33.42 Aligned_cols=76 Identities=9% Similarity=0.193 Sum_probs=54.1
Q ss_pred eEechhhHHHHHhcCCCcEEEEEEcCCChhhHHHHHH-H--HHHHHHhcCCeEEEEEECCCCHhHHH--------hCCCC
Q 030784 67 AVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRV-I--DEIAGEYAGRLRCFMVNTDTDLTIAE--------DYEIK 135 (171)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~-l--~~l~~~~~~~v~~~~vd~d~~~~l~~--------~~~i~ 135 (171)
.....+.|+ .+...++|+++-..-+.|..|..|... | ++.++.+.++..-++||-++.+++-+ .+|-.
T Consensus 98 ypwgqeaf~-kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~G 176 (786)
T KOG2244|consen 98 YPWGQEAFN-KARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGG 176 (786)
T ss_pred CcchHHHHH-HHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCC
Confidence 344456664 466789999999999999999888743 3 44666666556567777777777666 35777
Q ss_pred cccEEEEE
Q 030784 136 AVPVVLLF 143 (171)
Q Consensus 136 ~~Pt~~~~ 143 (171)
++|.-++.
T Consensus 177 GWPmsV~L 184 (786)
T KOG2244|consen 177 GWPMSVFL 184 (786)
T ss_pred CCceeEEe
Confidence 88876665
No 298
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=57.87 E-value=50 Score=21.51 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=40.3
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC-HhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHHH
Q 030784 92 SWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD-LTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 92 ~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~-~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~ 168 (171)
.+|+.|++.+=.|.+..- ...+..+|..+. ..+.+..-...+|++. .+|..+ .+-..|.++|++.
T Consensus 20 g~cpf~~rvrl~L~eKgi----~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i------~eS~~I~eYLde~ 85 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGV----VFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK------TDNNKIEEFLEET 85 (91)
T ss_pred CCChhHHHHHHHHHHCCC----ceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe------cCHHHHHHHHHHH
Confidence 589999988766654421 244566665554 4556666678899664 355433 3455677777765
No 299
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=57.22 E-value=37 Score=24.57 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=35.6
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEECC
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNTD 123 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~d 123 (171)
++-+.+.++++.++.|.-+...++.+++.+.+ +|.+-.+++.
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 45678889999999999999999999999998 7777766654
No 300
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=55.07 E-value=41 Score=20.09 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=34.0
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC-CCHhHHHhCCCCcccEEEEEeCCeE
Q 030784 88 EFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD-TDLTIAEDYEIKAVPVVLLFKNGEK 148 (171)
Q Consensus 88 ~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d-~~~~l~~~~~i~~~Pt~~~~~~g~~ 148 (171)
.|+.+.|++|.+..-.+.... .+-....+.+|.. ..+++.+......+|.+.. .+|..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~--~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~~ 61 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETG--LGDDVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGEA 61 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhC--CCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCCE
Confidence 466788999998776554421 1212444455432 2456666666788998754 35543
No 301
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=55.00 E-value=30 Score=24.99 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=26.1
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEE
Q 030784 88 EFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMV 120 (171)
Q Consensus 88 ~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~v 120 (171)
+|+..-|+.|-...+.++++.++++-.+.+.-+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 466779999999999999999988744554444
No 302
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=54.95 E-value=44 Score=20.01 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=38.4
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC-CHhHHHhCCC-CcccEEEEEeCCeEEEEEecCCCHHHHHHHH
Q 030784 88 EFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT-DLTIAEDYEI-KAVPVVLLFKNGEKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 88 ~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~-~~~l~~~~~i-~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 165 (171)
.++.+.|+.|++..-.+++..-. .....++... .+++.+.... ..+|++.. +|..+ ..-..+.++|
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~----~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~l------~eS~aI~~yL 70 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP----YEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKPI------CESLIIVEYI 70 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC----CEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEEe------ehHHHHHHHH
Confidence 45677899999988766554333 3334455433 2344444443 68998853 55432 2334455666
Q ss_pred HH
Q 030784 166 ER 167 (171)
Q Consensus 166 ~~ 167 (171)
++
T Consensus 71 ~~ 72 (74)
T cd03058 71 DE 72 (74)
T ss_pred Hh
Confidence 54
No 303
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=54.51 E-value=1.5e+02 Score=25.96 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=47.3
Q ss_pred cCCeeEechhhHHHHHhcCCCcEEEEEEcCCCh------hhHHHHHHHHHHHHHhcCCeEEEEEECCCCHh-----H---
Q 030784 63 RESRAVVTKDSWEKSILNSDTPVLVEFYASWCG------PCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLT-----I--- 128 (171)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~------~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~-----l--- 128 (171)
.+....|++.+- +.+..-+++|-|++|.+--. .=..+...|++++.. .+++.+-.+|-+.+++ +
T Consensus 29 ~~k~ytLS~~T~-~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~-s~~i~~~~iDP~~~~~~e~~~~~~~ 106 (552)
T TIGR03521 29 EDKRYTLSPASK-EVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAY-NPNIKFRFVNPLEEEDEQGEEILDS 106 (552)
T ss_pred CCCceecCHHHH-HHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCCCcchhhhhHHHHH
Confidence 456677877776 45556688888888765432 123445555555554 3459999999877543 3
Q ss_pred HHhCCCCccc
Q 030784 129 AEDYEIKAVP 138 (171)
Q Consensus 129 ~~~~~i~~~P 138 (171)
+.+|||...+
T Consensus 107 ~~~~gi~~~~ 116 (552)
T TIGR03521 107 LAQYGIKPAN 116 (552)
T ss_pred HHHcCCCcce
Confidence 3458887666
No 304
>PRK10387 glutaredoxin 2; Provisional
Probab=54.29 E-value=64 Score=23.61 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=31.0
Q ss_pred EEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeE
Q 030784 89 FYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEK 148 (171)
Q Consensus 89 f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~ 148 (171)
++.+.|++|.++.-.++...-. .....++..+.....+..+...+|+++. .+|..
T Consensus 4 y~~~~sp~~~kv~~~L~~~gi~----y~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~ 58 (210)
T PRK10387 4 YIYDHCPFCVKARMIFGLKNIP----VELIVLANDDEATPIRMIGQKQVPILQK-DDGSY 58 (210)
T ss_pred EeCCCCchHHHHHHHHHHcCCC----eEEEEcCCCchhhHHHhcCCcccceEEe-cCCeE
Confidence 4567799999887666554333 2334444433332233344568999854 35544
No 305
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=53.44 E-value=47 Score=20.57 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=36.5
Q ss_pred cCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHh---CCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHH
Q 030784 91 ASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAED---YEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 91 a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~---~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~ 167 (171)
-+||+.|++.+-.+....-.| .+..++..+....... -....+|++.. .+|..+ ..-..|.++|++
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~----~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~~l------~eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEY----KTVPVEFPDIPPILGELTSGGFYTVPVIVD-GSGEVI------GDSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCC----eEEEecCCCcccccccccCCCCceeCeEEE-CCCCEE------eCHHHHHHHHHH
Confidence 368999999887766544333 3444554333222222 23568898843 225432 244556666665
Q ss_pred H
Q 030784 168 V 168 (171)
Q Consensus 168 ~ 168 (171)
.
T Consensus 82 ~ 82 (84)
T cd03038 82 A 82 (84)
T ss_pred h
Confidence 3
No 306
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=53.15 E-value=66 Score=23.91 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=30.6
Q ss_pred EEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeE
Q 030784 89 FYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEK 148 (171)
Q Consensus 89 f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~ 148 (171)
++...|++|+++.-.+....-.| ..+.++.++.....+......+|++.. .+|..
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~~----e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~~ 57 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIPV----EKHVLLNDDEETPIRMIGAKQVPILQK-DDGRA 57 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCCe----EEEECCCCcchhHHHhcCCCCcceEEe-eCCeE
Confidence 45677999998776665544333 222333333333344445678998753 35543
No 307
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=52.89 E-value=42 Score=24.29 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=32.6
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD 123 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d 123 (171)
.+.++..|=+-+-+.|-.....+++.+.++++ +.++.+..|
T Consensus 45 k~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~-~~Vl~IS~D 85 (158)
T COG2077 45 KKKVISVFPSIDTPVCATQVRKFNEEAAKLGN-TVVLCISMD 85 (158)
T ss_pred ceEEEEEccCCCCchhhHHHHHHHHHHhccCC-cEEEEEeCC
Confidence 34555566677899999999999999999887 767777765
No 308
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=52.12 E-value=17 Score=25.91 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEE
Q 030784 103 VIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLL 142 (171)
Q Consensus 103 ~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~ 142 (171)
.|+.+.+..++ +.+.-++. .+|+++++++.||.++-
T Consensus 102 ~L~~Lr~lapg-l~l~P~sg---ddLA~rL~l~HYPvLIt 137 (142)
T PF11072_consen 102 ALQRLRQLAPG-LPLLPVSG---DDLARRLGLSHYPVLIT 137 (142)
T ss_pred HHHHHHHHcCC-CeecCCCH---HHHHHHhCCCcccEEee
Confidence 44555554443 55555543 48999999999998854
No 309
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=51.51 E-value=24 Score=22.36 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=21.5
Q ss_pred cccEEEEEe-CCeEEEEEe-cCCCHHHHHHHHHHHh
Q 030784 136 AVPVVLLFK-NGEKRETVV-GTMPKEFYIAAIERVL 169 (171)
Q Consensus 136 ~~Pt~~~~~-~g~~~~~~~-G~~~~~~l~~~i~~~l 169 (171)
.-|++++++ +|+++.++. ...+.+.+.++|.+.+
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 458999985 788777653 4458899999998754
No 310
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=50.93 E-value=17 Score=24.51 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEE
Q 030784 102 RVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLL 142 (171)
Q Consensus 102 ~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~ 142 (171)
..++++.+..++ +.+.-++. .+++++++++.||.++-
T Consensus 63 ~~l~~Lr~lapg-l~l~P~sg---ddLa~rL~l~hYPvLit 99 (105)
T TIGR03765 63 AALQRLRALAPG-LPLLPVSG---DDLAERLGLRHYPVLIT 99 (105)
T ss_pred HHHHHHHHHcCC-CcccCCCH---HHHHHHhCCCcccEEEe
Confidence 355556555554 55555544 48999999999998754
No 311
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=49.51 E-value=31 Score=23.53 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=33.6
Q ss_pred ChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCH-hHHHhCC--CCcccEEEEE
Q 030784 94 CGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL-TIAEDYE--IKAVPVVLLF 143 (171)
Q Consensus 94 C~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~-~l~~~~~--i~~~Pt~~~~ 143 (171)
|++|..++-.|.-.-.- .+.+.+.+|+...-. ++....| =++.|++++-
T Consensus 24 Cp~c~~iEGlLa~~P~l-~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~ 75 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDL-RERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLA 75 (112)
T ss_pred CCchHHHHhHHhhChhh-hhcccEEEeCCCCchHHHHHHhChhccCCCEEEeC
Confidence 99999888776444332 345889999987663 3444444 3689999775
No 312
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=49.40 E-value=61 Score=24.68 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=28.2
Q ss_pred HHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEE-eCCeEEE
Q 030784 105 DEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLF-KNGEKRE 150 (171)
Q Consensus 105 ~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~-~~g~~~~ 150 (171)
.++.+.++..+. +|.+..|.++|||+.+|.++.- .+|+...
T Consensus 157 ~~~~~~l~~~vY-----fdQ~G~Lt~rF~I~~VPAvV~~~q~G~~l~ 198 (209)
T PRK13738 157 PEMSKALDSRIY-----FDQNGVLCQRFGIDQVPARVSAVPGGRFLK 198 (209)
T ss_pred HHHHHHhCCceE-----EcCcchHHHhcCCeeeceEEEEcCCCCEEE
Confidence 455555554333 2566779999999999999752 6776654
No 313
>PRK00394 transcription factor; Reviewed
Probab=49.06 E-value=46 Score=24.61 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=25.5
Q ss_pred cEEEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 138 PVVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 138 Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
.++.+|..|+.+ ..|..+.++....++++++
T Consensus 47 ~t~lIf~sGKiv--~tGa~S~~~a~~a~~~~~~ 77 (179)
T PRK00394 47 IAALIFRSGKVV--CTGAKSVEDLHEAVKIIIK 77 (179)
T ss_pred eEEEEEcCCcEE--EEccCCHHHHHHHHHHHHH
Confidence 688899999887 5788899998888887653
No 314
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=48.79 E-value=73 Score=20.72 Aligned_cols=34 Identities=9% Similarity=-0.031 Sum_probs=22.6
Q ss_pred CeEEEEEECCCCHhHHHh--------CCCCcccEEEEEeCCeEE
Q 030784 114 RLRCFMVNTDTDLTIAED--------YEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 114 ~v~~~~vd~d~~~~l~~~--------~~i~~~Pt~~~~~~g~~~ 149 (171)
+|.|-.+|++.+++..+. .|-..+|-+++ +|+.+
T Consensus 30 ~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~i 71 (92)
T cd03030 30 KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYC 71 (92)
T ss_pred CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEe
Confidence 488999999877654332 23467787765 66555
No 315
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=47.85 E-value=28 Score=23.84 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=17.3
Q ss_pred EEEEEcCCChhhHHHHHHHHHH
Q 030784 86 LVEFYASWCGPCRMVHRVIDEI 107 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l 107 (171)
+..|+.+.|+.|+.....|++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5668899999999988666543
No 316
>COG3411 Ferredoxin [Energy production and conversion]
Probab=47.73 E-value=57 Score=19.93 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=22.9
Q ss_pred cccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 136 AVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 136 ~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
-=|++++|.+|. ..+..+.+.....++.++.
T Consensus 16 ~gPvl~vYpegv----WY~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 16 DGPVLVVYPEGV----WYTRVDPEDARRIVQSHLL 46 (64)
T ss_pred cCCEEEEecCCe----eEeccCHHHHHHHHHHHHh
Confidence 348999999993 3445688888888887764
No 317
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=45.77 E-value=61 Score=24.50 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=24.8
Q ss_pred CcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEEC
Q 030784 83 TPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNT 122 (171)
Q Consensus 83 ~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~ 122 (171)
.--+..|....|+.|......+. .. +..+.++.|+.
T Consensus 109 ~~rlalFvkd~C~~C~~~~~~l~---a~-~~~~Diylvgs 144 (200)
T TIGR03759 109 GGRLALFVKDDCVACDARVQRLL---AD-NAPLDLYLVGS 144 (200)
T ss_pred CCeEEEEeCCCChHHHHHHHHHh---cC-CCceeEEEecC
Confidence 34577788899999998765552 22 23588888883
No 318
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=45.33 E-value=41 Score=20.04 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=30.6
Q ss_pred EEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC--HhHHHhCCCCcccEEEEEeCCeE
Q 030784 89 FYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD--LTIAEDYEIKAVPVVLLFKNGEK 148 (171)
Q Consensus 89 f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~--~~l~~~~~i~~~Pt~~~~~~g~~ 148 (171)
++.+.|+.|++++-.+++..-.| ....++..+. .++.+...-..+|++.. +|..
T Consensus 4 y~~~~~~~~~~v~~~l~~~gi~~----e~~~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~ 59 (72)
T cd03039 4 TYFNIRGRGEPIRLLLADAGVEY----EDVRITYEEWPELDLKPTLPFGQLPVLEI--DGKK 59 (72)
T ss_pred EEEcCcchHHHHHHHHHHCCCCc----EEEEeCHHHhhhhhhccCCcCCCCCEEEE--CCEE
Confidence 45577899998776665554433 3344443322 22344455678898853 5543
No 319
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=45.17 E-value=27 Score=28.84 Aligned_cols=75 Identities=23% Similarity=0.229 Sum_probs=40.5
Q ss_pred ChhhHHHHHHHHHHHHH----h---cCCeEEEEEECCC-CHhHHH--hCCCC-ccc-EEEEEeCCeEEEEE-ecCCCHHH
Q 030784 94 CGPCRMVHRVIDEIAGE----Y---AGRLRCFMVNTDT-DLTIAE--DYEIK-AVP-VVLLFKNGEKRETV-VGTMPKEF 160 (171)
Q Consensus 94 C~~C~~~~~~l~~l~~~----~---~~~v~~~~vd~d~-~~~l~~--~~~i~-~~P-t~~~~~~g~~~~~~-~G~~~~~~ 160 (171)
||.|-+..-.+.++.++ . +..+.+..+-|-- .|.-++ +||+- +-+ ...+|++|+.+.+. ....-.+.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~ 350 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDE 350 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHH
Confidence 66665444344444433 2 2347777776643 354444 45655 334 47889999999987 66555566
Q ss_pred HHHHHHHH
Q 030784 161 YIAAIERV 168 (171)
Q Consensus 161 l~~~i~~~ 168 (171)
+.+.|++.
T Consensus 351 L~~~I~~~ 358 (359)
T PF04551_consen 351 LIELIEEH 358 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 77776654
No 320
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=45.16 E-value=43 Score=24.78 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=25.3
Q ss_pred cEEEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 138 PVVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 138 Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
+++++|+.|+.+ .+|.-+.++++..++++++
T Consensus 54 ~a~LIF~SGK~V--cTGaKs~ed~~~av~~~~~ 84 (185)
T COG2101 54 TAALIFRSGKVV--CTGAKSVEDVHRAVKKLAK 84 (185)
T ss_pred ceEEEEecCcEE--EeccCcHHHHHHHHHHHHH
Confidence 367788999887 5788899999988887764
No 321
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=44.83 E-value=28 Score=23.42 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=21.5
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC
Q 030784 87 VEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT 124 (171)
Q Consensus 87 V~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~ 124 (171)
..|+.+.|..|++....|++- ++.+..+|+-+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYLK 33 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccc
Confidence 468899999999977555432 25556666543
No 322
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=44.31 E-value=28 Score=23.48 Aligned_cols=33 Identities=9% Similarity=0.158 Sum_probs=22.9
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC
Q 030784 87 VEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD 125 (171)
Q Consensus 87 V~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~ 125 (171)
..|+.+.|..|++....|++- ++.+..+|+-+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccCC
Confidence 468899999999988666542 255566665443
No 323
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=43.22 E-value=28 Score=26.36 Aligned_cols=29 Identities=14% Similarity=0.360 Sum_probs=25.7
Q ss_pred cEEEEEEcCCChhhHHHHHHHHHHHHHhc
Q 030784 84 PVLVEFYASWCGPCRMVHRVIDEIAGEYA 112 (171)
Q Consensus 84 ~vvV~f~a~wC~~C~~~~~~l~~l~~~~~ 112 (171)
..|.|.+.|-|+.|--..|.++++....+
T Consensus 2 ~~lhYifDPmCgWCyGa~Pll~~l~~~~g 30 (212)
T COG3531 2 VTLHYIFDPMCGWCYGAAPLLEALSAQPG 30 (212)
T ss_pred ceeEEecCcchhhhhCccHHHHHHHhcCC
Confidence 35788999999999999999999998864
No 324
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=43.03 E-value=74 Score=19.11 Aligned_cols=55 Identities=11% Similarity=0.066 Sum_probs=34.8
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC----CHhHHHhCCCCcccEEEEEeCCeE
Q 030784 88 EFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT----DLTIAEDYEIKAVPVVLLFKNGEK 148 (171)
Q Consensus 88 ~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~----~~~l~~~~~i~~~Pt~~~~~~g~~ 148 (171)
.++.+-++.|+++.-.+++..-. .....++..+ .+++.+......+|++.. +|..
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~ 61 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKIP----FEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDFT 61 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCCC----cEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCEE
Confidence 46677899998877666554433 3445555432 246666677889998853 5643
No 325
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=42.39 E-value=74 Score=18.91 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=31.4
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHH
Q 030784 92 SWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 92 ~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~ 167 (171)
+||+.|++.+-.++... +.+-.++++... .-.-..+|++.. +|+.+ .....+.++|++
T Consensus 14 s~sp~~~~v~~~L~~~~------i~~~~~~~~~~~----~~p~g~vP~l~~--~g~~l------~es~~I~~yL~~ 71 (72)
T cd03054 14 SLSPECLKVETYLRMAG------IPYEVVFSSNPW----RSPTGKLPFLEL--NGEKI------ADSEKIIEYLKK 71 (72)
T ss_pred CCCHHHHHHHHHHHhCC------CceEEEecCCcc----cCCCcccCEEEE--CCEEE------cCHHHHHHHHhh
Confidence 58999999887665532 333333333211 123457898864 56433 223555555553
No 326
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=41.89 E-value=63 Score=23.78 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=23.2
Q ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHHHh
Q 030784 139 VVLLFKNGEKRETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 139 t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l 169 (171)
++.+|..|+.+ ..|..+.++....+++++
T Consensus 49 t~lIF~SGKiv--iTGaks~e~a~~a~~~i~ 77 (174)
T cd04516 49 TALIFSSGKMV--CTGAKSEDDSKLAARKYA 77 (174)
T ss_pred EEEEECCCeEE--EEecCCHHHHHHHHHHHH
Confidence 67888999887 578888988887777664
No 327
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=41.34 E-value=64 Score=23.69 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=23.4
Q ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 139 VVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 139 t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
++.+|..|+.+ ..|..+.+++...++.+++
T Consensus 141 t~lIF~sGkvv--itGaks~~~~~~a~~~i~~ 170 (174)
T cd00652 141 VLLIFVSGKIV--ITGAKSREDIYEAVEKIYP 170 (174)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 56778889877 6788888888888877653
No 328
>PRK00394 transcription factor; Reviewed
Probab=41.32 E-value=65 Score=23.83 Aligned_cols=31 Identities=35% Similarity=0.516 Sum_probs=24.3
Q ss_pred cEEEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 138 PVVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 138 Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
-++.+|..|+.+ ..|..+.+++...++++++
T Consensus 140 ~~~lIF~SGKvv--itGaks~~~~~~a~~~i~~ 170 (179)
T PRK00394 140 VVVLLFGSGKLV--ITGAKSEEDAEKAVEKILE 170 (179)
T ss_pred EEEEEEcCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 367788899887 6788899988888877653
No 329
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=40.29 E-value=69 Score=23.58 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=23.4
Q ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHHHh
Q 030784 139 VVLLFKNGEKRETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 139 t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l 169 (171)
++.+|..|+.+ ..|..+.+++...++++.
T Consensus 140 ~~lIF~SGKvv--itGaks~~~~~~a~~~i~ 168 (174)
T cd04518 140 VLLLFSSGKMV--ITGAKSEEDAKRAVEKLL 168 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHH
Confidence 67778899887 578889998888887764
No 330
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=40.17 E-value=97 Score=25.00 Aligned_cols=73 Identities=23% Similarity=0.268 Sum_probs=41.1
Q ss_pred cEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHH
Q 030784 84 PVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIA 163 (171)
Q Consensus 84 ~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~ 163 (171)
.-++.|--..|+.|.+++..|+-..-. -.++.||.-...++-=. ..+.+|.+.+ +|+. ..+-..|+.
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgis----Y~VVEVnpV~r~eIk~S-sykKVPil~~--~Geq------m~dSsvIIs 155 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGIS----YAVVEVNPVLRQEIKWS-SYKKVPILLI--RGEQ------MVDSSVIIS 155 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCCc----eEEEEecchhhhhcccc-ccccccEEEe--ccce------echhHHHHH
Confidence 356666678899999988777533222 23455554333333111 4578898766 4653 223344555
Q ss_pred HHHHHh
Q 030784 164 AIERVL 169 (171)
Q Consensus 164 ~i~~~l 169 (171)
.|...|
T Consensus 156 ~laTyL 161 (370)
T KOG3029|consen 156 LLATYL 161 (370)
T ss_pred HHHHHh
Confidence 554444
No 331
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=40.03 E-value=84 Score=18.90 Aligned_cols=56 Identities=5% Similarity=-0.072 Sum_probs=35.0
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC---CCHhHHHhCCCCcccEEEEEeCCeE
Q 030784 88 EFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD---TDLTIAEDYEIKAVPVVLLFKNGEK 148 (171)
Q Consensus 88 ~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d---~~~~l~~~~~i~~~Pt~~~~~~g~~ 148 (171)
.|+.+-|+.|.+..-.++...- ...+..+|.. ..+++.+......+|++.. .+|..
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~-~~g~~ 61 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGL----DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG-ADGFC 61 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCC----ceEEEecccccccCCHHHHHhCCCCCCCEEEc-CCCCE
Confidence 3566778889887766654422 2445566653 2456666667789999965 24543
No 332
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=39.86 E-value=70 Score=23.49 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=24.4
Q ss_pred cEEEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 138 PVVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 138 Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
.++.+|..|+.+ ..|..+.++....++++++
T Consensus 48 ~t~lIf~sGKiv--itGaks~~~~~~a~~~~~~ 78 (174)
T cd00652 48 TTALIFSSGKMV--ITGAKSEEDAKLAARKYAR 78 (174)
T ss_pred EEEEEECCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 478889999887 5788888888887776643
No 333
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=39.81 E-value=72 Score=23.45 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=24.4
Q ss_pred cEEEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 138 PVVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 138 Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
.++.+|..|+.+ ..|..+.++....++++++
T Consensus 48 ~t~lIF~sGKiv--iTGaks~~~~~~a~~~~~~ 78 (174)
T cd04517 48 ATASVWSSGKIT--ITGATSEEEAKQAARRAAR 78 (174)
T ss_pred EEEEEECCCeEE--EEccCCHHHHHHHHHHHHH
Confidence 477888999887 5788889888888776643
No 334
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=39.72 E-value=31 Score=26.85 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=50.9
Q ss_pred CcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC------------------CCHhHHHhCCCCcccEEEEEe
Q 030784 83 TPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD------------------TDLTIAEDYEIKAVPVVLLFK 144 (171)
Q Consensus 83 ~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d------------------~~~~l~~~~~i~~~Pt~~~~~ 144 (171)
..||=.|++.-|.-|--....|.+++.+ ++ |.-+...+| ......+.|+-+.++|=-.+-
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~-~~-vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavv 119 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD-PG-VLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVV 119 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC-CC-EEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhee
Confidence 3455566677899999888888888877 32 443333332 223566778888887766555
Q ss_pred CCeEEEEEecCCCHHHHHHHHHHH
Q 030784 145 NGEKRETVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 145 ~g~~~~~~~G~~~~~~l~~~i~~~ 168 (171)
+|.... .|. +...|.+.|+..
T Consensus 120 nGr~~~--~Ga-d~~~i~~~i~a~ 140 (261)
T COG5429 120 NGRVHA--NGA-DPGAIEDAIAAM 140 (261)
T ss_pred echhhh--cCC-CHHHHHHHHHHh
Confidence 775542 343 555666666654
No 335
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=39.59 E-value=1.1e+02 Score=20.10 Aligned_cols=70 Identities=16% Similarity=0.272 Sum_probs=40.4
Q ss_pred CChhhH------HHHHHHHH-HHHHhcCC-eEEEEEECCCCH------hHHHh--CCCCcccEEEEEeCCeEEEEEecCC
Q 030784 93 WCGPCR------MVHRVIDE-IAGEYAGR-LRCFMVNTDTDL------TIAED--YEIKAVPVVLLFKNGEKRETVVGTM 156 (171)
Q Consensus 93 wC~~C~------~~~~~l~~-l~~~~~~~-v~~~~vd~d~~~------~l~~~--~~i~~~Pt~~~~~~g~~~~~~~G~~ 156 (171)
-|..|. .-..-|+. +.++|+++ +.+.+||+.+.+ +++++ -.--.+|-+++ +|+.++ .|..
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV~--EGnp 83 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDEIVA--EGNP 83 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTEEEE--ESS-
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCEEEe--cCCc
Confidence 477773 33344433 45678764 999999997653 34433 23457898888 998885 6777
Q ss_pred CHHHHHHHHH
Q 030784 157 PKEFYIAAIE 166 (171)
Q Consensus 157 ~~~~l~~~i~ 166 (171)
...++-.+++
T Consensus 84 ~LK~I~~~~e 93 (93)
T PF07315_consen 84 QLKDIYEEME 93 (93)
T ss_dssp -HHHHHHHHH
T ss_pred cHHHHHHhhC
Confidence 7776666553
No 336
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=39.40 E-value=51 Score=27.07 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=37.4
Q ss_pred cCCChhhHH-HHHHHHHHHHHh---cCCeEEEEEECC-CCHhHHH--hCCCCcc--cEEEEEeCCeEEEEEecCCCHHHH
Q 030784 91 ASWCGPCRM-VHRVIDEIAGEY---AGRLRCFMVNTD-TDLTIAE--DYEIKAV--PVVLLFKNGEKRETVVGTMPKEFY 161 (171)
Q Consensus 91 a~wC~~C~~-~~~~l~~l~~~~---~~~v~~~~vd~d-~~~~l~~--~~~i~~~--Pt~~~~~~g~~~~~~~G~~~~~~l 161 (171)
=|.|+.|.- +....+++.+.+ +..+.+..+-|- +.|.-++ ++||-+- -..++|++|+++..+ +.+++
T Consensus 262 CPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv----~~~~~ 337 (346)
T TIGR00612 262 CPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQ----PETDM 337 (346)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEec----CHHHH
Confidence 355555532 222333333333 334665555543 2233333 4666543 357788999887654 44455
Q ss_pred HHHHHHH
Q 030784 162 IAAIERV 168 (171)
Q Consensus 162 ~~~i~~~ 168 (171)
.+.+.+.
T Consensus 338 ~~~l~~~ 344 (346)
T TIGR00612 338 ADELIRL 344 (346)
T ss_pred HHHHHHh
Confidence 5544443
No 337
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=39.39 E-value=82 Score=21.57 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=19.1
Q ss_pred HHHhCCCCcccEEEEEeCCeEEEEEecCCCHHH
Q 030784 128 IAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEF 160 (171)
Q Consensus 128 l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~ 160 (171)
-+-.|||+.+|.+++ |++.+ +.|..+-..
T Consensus 76 ~Aw~lGi~k~PAVV~--D~~~V--VYG~~DV~~ 104 (113)
T TIGR03757 76 DAWQLGVTKIPAVVV--DRRYV--VYGETDVAR 104 (113)
T ss_pred HHHHcCCccCCEEEE--cCCeE--EecCccHHH
Confidence 345789999999988 55433 456544443
No 338
>PLN00062 TATA-box-binding protein; Provisional
Probab=39.31 E-value=71 Score=23.65 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=23.0
Q ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 139 VVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 139 t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
++.+|..|+.+ +.|..+.+++.+.++.++.
T Consensus 140 ~~liF~sGkvv--itGaks~~~~~~ai~~i~p 169 (179)
T PLN00062 140 VLLIFVSGKIV--ITGAKVREEIYTAFENIYP 169 (179)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 56677788776 6788889988888887653
No 339
>PLN00062 TATA-box-binding protein; Provisional
Probab=39.20 E-value=71 Score=23.64 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=24.4
Q ss_pred cEEEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 138 PVVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 138 Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
.++.+|..|+.+ ..|..+.++....++++++
T Consensus 48 ~t~lIF~SGKiv--iTGaks~e~a~~a~~~~~~ 78 (179)
T PLN00062 48 TTALIFASGKMV--CTGAKSEHDSKLAARKYAR 78 (179)
T ss_pred EEEEEECCCeEE--EEecCCHHHHHHHHHHHHH
Confidence 478889999887 5788888888877776643
No 340
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=38.27 E-value=1.8e+02 Score=22.22 Aligned_cols=70 Identities=10% Similarity=-0.035 Sum_probs=42.7
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHH-hCCCCcccEEEEEeCCeEEEE
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAE-DYEIKAVPVVLLFKNGEKRET 151 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~-~~~i~~~Pt~~~~~~g~~~~~ 151 (171)
.|+..+..=||++.|--..|...-.++.++--| |.++.+.....++... --|+..+|...+...|.....
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~D-VViG~vethgR~et~~l~~gLe~iP~~~i~y~g~~~~E 73 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVD-VVIGYVETHGRPETEALLEGLEVIPRKKIEYRGRTLEE 73 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT---EEEEE---TT-HHHHHHHCTS-B---EEEEETTEEEEE
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCC-EEEEEecCCCcHHHHHHHcCCCcCCCeeEeeCCEeccc
Confidence 455555555899999988888887777776444 8889998877777654 457889998888778866553
No 341
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=37.71 E-value=78 Score=23.26 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=23.8
Q ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 139 VVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 139 t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
++.+|..|+++ ..|..+.+++.+.+++++.
T Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~p 170 (174)
T cd04517 141 TLSIFSTGSVT--VTGARSMEDVREAVEKIYP 170 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 66777888776 6788899999998887753
No 342
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=37.62 E-value=79 Score=23.28 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=23.3
Q ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 139 VVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 139 t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
++.+|..|+.+ ..|..+.+++.+.++.++.
T Consensus 140 ~~liF~sGkvv--itGaks~~~~~~a~~~i~p 169 (174)
T cd04516 140 VLLIFVSGKIV--LTGAKSREEIYQAFENIYP 169 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 45677888877 6788889999988887753
No 343
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=37.17 E-value=81 Score=23.20 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=24.9
Q ss_pred cEEEEEeCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 138 PVVLLFKNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 138 Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
.++.+|..|+.+ ..|..+.++....++++++
T Consensus 48 ~t~lIF~SGKiv--~tGaks~~~a~~a~~~~~~ 78 (174)
T cd04518 48 IAALIFRSGKMV--CTGAKSVEDLHRAVKEIIK 78 (174)
T ss_pred EEEEEECCCeEE--EEccCCHHHHHHHHHHHHH
Confidence 578889999887 5788899888888777653
No 344
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=37.05 E-value=1.1e+02 Score=20.41 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=20.1
Q ss_pred EEEEEcCCChhhHHHH-HHHHHH--HHHhcCCeEE
Q 030784 86 LVEFYASWCGPCRMVH-RVIDEI--AGEYAGRLRC 117 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~-~~l~~l--~~~~~~~v~~ 117 (171)
|-.||-+-|+.|+++. ..|... ...+.+.+.+
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l 37 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNL 37 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEE
Confidence 5568899999999874 345542 2444554433
No 345
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=36.85 E-value=75 Score=23.11 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=21.9
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHhc
Q 030784 88 EFYASWCGPCRMVHRVIDEIAGEYA 112 (171)
Q Consensus 88 ~f~a~wC~~C~~~~~~l~~l~~~~~ 112 (171)
.|+..-|+.|-...+.|.++.++++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 4667789999999999999999985
No 346
>PRK10853 putative reductase; Provisional
Probab=36.54 E-value=49 Score=22.58 Aligned_cols=32 Identities=6% Similarity=0.122 Sum_probs=22.0
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD 123 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d 123 (171)
+..|+-+.|..|++....|++- ++.+-.+|+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~------~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ------GIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc------CCCcEEeehc
Confidence 4567789999999988666543 2555556653
No 347
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=36.04 E-value=98 Score=25.78 Aligned_cols=71 Identities=14% Similarity=0.236 Sum_probs=47.4
Q ss_pred CChhhHH-HHHHHHHHHHHhc-CCeEEEEEECC-----CCHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHH
Q 030784 93 WCGPCRM-VHRVIDEIAGEYA-GRLRCFMVNTD-----TDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 93 wC~~C~~-~~~~l~~l~~~~~-~~v~~~~vd~d-----~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 165 (171)
.|.+|.. ....+.+++++++ |++.++....- +.+++-++++-.++|.+.+ +|... ..+.+++...|
T Consensus 299 ~~~pn~e~r~k~i~~mvkE~~vDGvv~~~l~fC~p~~~e~~~lk~~~kE~~iPvi~~--e~D~~-----~~d~eQlkTRl 371 (379)
T COG1775 299 CYSPNDEFRVKYISRMVKEYNVDGVVLYTLRFCKPYSVEYPELKRRLKEEGIPVIAI--EGDYS-----NFDVEQLKTRL 371 (379)
T ss_pred cCCccHHHHHHHHHHHHHHcCCCeEeehhhhccCccccccHHHHHHHHhcCCcEEEe--ccccc-----cccHHHHHHHH
Confidence 3678887 4456788888876 44655555443 3688888888888998877 44322 34667777777
Q ss_pred HHHhc
Q 030784 166 ERVLK 170 (171)
Q Consensus 166 ~~~l~ 170 (171)
+..++
T Consensus 372 EaFlE 376 (379)
T COG1775 372 EAFLE 376 (379)
T ss_pred HHHHH
Confidence 66554
No 348
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=34.51 E-value=1.1e+02 Score=20.28 Aligned_cols=31 Identities=13% Similarity=0.394 Sum_probs=19.5
Q ss_pred EEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC
Q 030784 89 FYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD 125 (171)
Q Consensus 89 f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~ 125 (171)
|+-+.|..|+.....|++ . ++.+-.+|.-+.
T Consensus 1 Y~~~~C~t~rka~~~L~~----~--gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE----N--GIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH----T--T--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHH----c--CCCeEeehhhhC
Confidence 567899999998866654 2 367777887664
No 349
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=34.41 E-value=1.9e+02 Score=23.74 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=45.5
Q ss_pred CeeEechhhHHHHHhcCCCcEEEEEEcCCChhhH-HHHHHHHHHHHHhcC---CeEEEEEECCCCHhHHHhCC--CCccc
Q 030784 65 SRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCR-MVHRVIDEIAGEYAG---RLRCFMVNTDTDLTIAEDYE--IKAVP 138 (171)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~-~~~~~l~~l~~~~~~---~v~~~~vd~d~~~~l~~~~~--i~~~P 138 (171)
-++++|-+|.++ +.+.|.|.+|.|+.+.-.... .+.. .+++++.+ .+.++..|.+.-..-..-+| -.-+|
T Consensus 211 LVREiTFeN~EE-LtEEGlPflILf~~kdD~~s~k~F~~---aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~DLP 286 (375)
T KOG0912|consen 211 LVREITFENAEE-LTEEGLPFLILFRKKDDKESEKIFKN---AIARELDDETLAINFLTADGKVFKHPLRHLGKSPDDLP 286 (375)
T ss_pred hhhhhhhccHHH-HhhcCCceEEEEecCCcccHHHHHHH---HHHHHhhhhhhccceeecCcceecchHHHhCCCcccCc
Confidence 357899999865 557899999999988765443 3332 33444432 37888888765433333333 23456
Q ss_pred EEEE
Q 030784 139 VVLL 142 (171)
Q Consensus 139 t~~~ 142 (171)
.+.+
T Consensus 287 viaI 290 (375)
T KOG0912|consen 287 VIAI 290 (375)
T ss_pred EEEe
Confidence 5544
No 350
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=34.21 E-value=69 Score=22.17 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=17.0
Q ss_pred EEEEEcCCChhhHHHHHHHHHH
Q 030784 86 LVEFYASWCGPCRMVHRVIDEI 107 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l 107 (171)
+..|+-+.|..|++....|++-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5567889999999988666543
No 351
>PRK15113 glutathione S-transferase; Provisional
Probab=33.93 E-value=1.9e+02 Score=21.30 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=37.5
Q ss_pred cEEEEEEcC--CChhhHHHHHHHHHHHHHhcCCeEEEEEECCC----CHhHHHhCCCCcccEEEEEeCCeEE
Q 030784 84 PVLVEFYAS--WCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT----DLTIAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 84 ~vvV~f~a~--wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~----~~~l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
+-+..++.+ .|++|++..-.+.+..-+ ..+..+|..+ .+++.+..-...+|++.. +|..+
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~----~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~--~~~~l 69 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLP----FELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH--DDFEL 69 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCC----CeEEEeCCCCccccCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 445556654 599998877666555333 4455666543 256666666788999964 55443
No 352
>PRK11752 putative S-transferase; Provisional
Probab=33.54 E-value=1.9e+02 Score=22.42 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=36.9
Q ss_pred EEEEcCCChhhHHHHHHHHHH-HHHhcC-CeEEEEEECCC----CHhHHHhCCCCcccEEEE
Q 030784 87 VEFYASWCGPCRMVHRVIDEI-AGEYAG-RLRCFMVNTDT----DLTIAEDYEIKAVPVVLL 142 (171)
Q Consensus 87 V~f~a~wC~~C~~~~~~l~~l-~~~~~~-~v~~~~vd~d~----~~~l~~~~~i~~~Pt~~~ 142 (171)
+.+|..+++.|+++.=.++++ +...++ ...++.+|... .+++.+..-...+|+++.
T Consensus 45 ~~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~ 106 (264)
T PRK11752 45 LQLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLD 106 (264)
T ss_pred eEEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEe
Confidence 344456799999999888775 333321 35566776543 356776666789999965
No 353
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=33.54 E-value=1.2e+02 Score=19.30 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=25.0
Q ss_pred HhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHh
Q 030784 126 LTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 126 ~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l 169 (171)
..+|+++|+.++ +.=..+|.......| +.+.+.++++.+.
T Consensus 24 ~~~A~~~gl~G~--V~N~~dg~V~i~~~G--~~~~l~~f~~~l~ 63 (91)
T PF00708_consen 24 KRIARKLGLTGW--VRNLPDGSVEIEAEG--EEEQLEEFIKWLK 63 (91)
T ss_dssp HHHHHHTT-EEE--EEE-TTSEEEEEEEE--EHHHHHHHHHHHH
T ss_pred HHHHHHhCCceE--EEECCCCEEEEEEEe--CHHHHHHHHHHHH
Confidence 467888998887 333357766666777 5566666666543
No 354
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.61 E-value=22 Score=26.60 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=39.4
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEE
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRE 150 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 150 (171)
.+|+++--+|.+.|..=.++.-.|+.+--+|.. |.++.-.-..+.++.+---...+|++++ +|..+.
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~P-vnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~ 69 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKP-VNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLT 69 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceee-hhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEee
Confidence 357777778888888877776666665555443 3333221111123333344578999988 776543
No 355
>PRK10026 arsenate reductase; Provisional
Probab=32.29 E-value=69 Score=22.73 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=17.1
Q ss_pred EEEEEcCCChhhHHHHHHHHHH
Q 030784 86 LVEFYASWCGPCRMVHRVIDEI 107 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l 107 (171)
+..|+-+.|..|++....|++-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5578899999999988666543
No 356
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=32.20 E-value=57 Score=24.43 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=31.3
Q ss_pred cCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCe
Q 030784 91 ASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGE 147 (171)
Q Consensus 91 a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~ 147 (171)
-++|+.|.+.+-.+ .-.+-.+....++.|+...--+--|-+.+|.+.- .+|+
T Consensus 6 YdHCPfcvrarmi~----Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~K-edg~ 57 (215)
T COG2999 6 YDHCPFCVRARMIF----GLKNIPVELHVLLNDDEETPIRMIGQKQVPILQK-EDGR 57 (215)
T ss_pred eccChHHHHHHHHh----hccCCChhhheeccCcccChhhhhcccccceEEc-cccc
Confidence 47899999866333 1112235556666666655556677788886643 3454
No 357
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=31.80 E-value=1.2e+02 Score=18.16 Aligned_cols=55 Identities=7% Similarity=-0.025 Sum_probs=30.0
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCH-hHHHhCCCCcccEEEEEeCCeE
Q 030784 88 EFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDL-TIAEDYEIKAVPVVLLFKNGEK 148 (171)
Q Consensus 88 ~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~-~l~~~~~i~~~Pt~~~~~~g~~ 148 (171)
.+|.+-|+.|++.+-.+.+..-. .....++.+... ++.+...-..+|++.. +|..
T Consensus 4 Ly~~~~~~~~~~v~~~L~~~~i~----~e~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 59 (73)
T cd03076 4 LTYFPVRGRAEAIRLLLADQGIS----WEEERVTYEEWQESLKPKMLFGQLPCFKD--GDLT 59 (73)
T ss_pred EEEeCCcchHHHHHHHHHHcCCC----CEEEEecHHHhhhhhhccCCCCCCCEEEE--CCEE
Confidence 44556799999777666555433 333444443222 2333333467898853 5543
No 358
>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]
Probab=31.70 E-value=69 Score=22.76 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=22.3
Q ss_pred ccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHh
Q 030784 137 VPVVLLF-KNGEKRETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 137 ~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~l 169 (171)
.|....| ++|+.+-.-...+..++|++-|.+.|
T Consensus 74 sPF~R~YlddGr~vL~Dld~~~r~eI~~hl~K~l 107 (169)
T KOG4079|consen 74 SPFARAYLDDGREVLFDLDGMKREEIEKHLAKTL 107 (169)
T ss_pred ChHHHheecCcceEEEEcccccHHHHHHHHHHHh
Confidence 3444444 78888776555568888888877765
No 359
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=31.39 E-value=1.1e+02 Score=17.60 Aligned_cols=35 Identities=14% Similarity=0.359 Sum_probs=23.4
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC
Q 030784 87 VEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD 125 (171)
Q Consensus 87 V~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~ 125 (171)
+....-+|..|.. .+++.....++ |.-+.+|...+
T Consensus 2 ~~v~~m~C~~C~~---~v~~~l~~~~G-V~~v~vd~~~~ 36 (62)
T PF00403_consen 2 FKVPGMTCEGCAK---KVEKALSKLPG-VKSVKVDLETK 36 (62)
T ss_dssp EEEESTTSHHHHH---HHHHHHHTSTT-EEEEEEETTTT
T ss_pred EEECCcccHHHHH---HHHHHHhcCCC-CcEEEEECCCC
Confidence 3455778999986 44555556565 77778876644
No 360
>PRK14531 adenylate kinase; Provisional
Probab=31.08 E-value=93 Score=22.53 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=50.4
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeE-EEEEECCC---------------CHh-HHHh---CCCCcccEEE
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLR-CFMVNTDT---------------DLT-IAED---YEIKAVPVVL 141 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~-~~~vd~d~---------------~~~-l~~~---~~i~~~Pt~~ 141 (171)
++.+||+ .++.-......|+++....+..+. ++.++++. +.+ +.++ |.-...|.+-
T Consensus 79 ~~g~ilD----Gfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~ 154 (183)
T PRK14531 79 SGGWLLD----GFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLID 154 (183)
T ss_pred CCcEEEe----CCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4556665 455556666677777776553332 56666642 222 2222 3334567666
Q ss_pred EEeCCeEEEEEecCCCHHHHHHHHHHHh
Q 030784 142 LFKNGEKRETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 142 ~~~~g~~~~~~~G~~~~~~l~~~i~~~l 169 (171)
+|++-..+..+.|..+.+.+...|.+.|
T Consensus 155 ~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 155 HYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred HHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 6654335777888888888888887766
No 361
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=30.86 E-value=69 Score=19.52 Aligned_cols=70 Identities=9% Similarity=0.030 Sum_probs=40.1
Q ss_pred EEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECC----CCHhHHHhCCCCcccEEEEEeC--CeEEEEEecCCCHHHH
Q 030784 88 EFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD----TDLTIAEDYEIKAVPVVLLFKN--GEKRETVVGTMPKEFY 161 (171)
Q Consensus 88 ~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d----~~~~l~~~~~i~~~Pt~~~~~~--g~~~~~~~G~~~~~~l 161 (171)
.+|...++.|++..-.+++..-. .....++.. ..+++.+......+|++.. .+ |..+ ..-..|
T Consensus 3 ~Ly~~~~~~~~~v~~~l~~~gl~----~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~g~~l------~eS~aI 71 (81)
T cd03048 3 TLYTHGTPNGFKVSIMLEELGLP----YEIHPVDISKGEQKKPEFLKINPNGRIPAIVD-HNGTPLTV------FESGAI 71 (81)
T ss_pred EEEeCCCCChHHHHHHHHHcCCC----cEEEEecCcCCcccCHHHHHhCcCCCCCEEEe-CCCCceEE------EcHHHH
Confidence 34444468999888777665433 334455532 2356666666788999854 22 4332 233456
Q ss_pred HHHHHHH
Q 030784 162 IAAIERV 168 (171)
Q Consensus 162 ~~~i~~~ 168 (171)
.++|.+.
T Consensus 72 ~~yL~~~ 78 (81)
T cd03048 72 LLYLAEK 78 (81)
T ss_pred HHHHHHH
Confidence 6666654
No 362
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.70 E-value=82 Score=24.30 Aligned_cols=32 Identities=16% Similarity=0.439 Sum_probs=25.0
Q ss_pred cEEEEEE-cCCChhhHHHHHHHHHHHHHhcCCe
Q 030784 84 PVLVEFY-ASWCGPCRMVHRVIDEIAGEYAGRL 115 (171)
Q Consensus 84 ~vvV~f~-a~wC~~C~~~~~~l~~l~~~~~~~v 115 (171)
.+-|++| ..-|+.|-...+.|+++..++++.+
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 3445555 5679999999999999999998643
No 363
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=30.40 E-value=59 Score=21.27 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=26.4
Q ss_pred hCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHHH
Q 030784 131 DYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 131 ~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~ 168 (171)
+|++...-.=++|++|+++.+..|...+..+-..+..+
T Consensus 18 ryk~~va~hgflfddg~~vw~e~~d~~w~rl~~vv~al 55 (111)
T PF02484_consen 18 RYKNEVARHGFLFDDGDIVWSEDDDETWNRLCDVVNAL 55 (111)
T ss_pred HHHhhccccceEecCCcEEEecCChHHHHHHHHHHHHH
Confidence 46665555556889999999988877766665555443
No 364
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=29.61 E-value=2.7e+02 Score=22.18 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=45.6
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC-------HhHHHhCCCCcccEEEEE----------
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD-------LTIAEDYEIKAVPVVLLF---------- 143 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~-------~~l~~~~~i~~~Pt~~~~---------- 143 (171)
...-+...++.++|..-..=+..+.+|+++. .+..|=.+.+ -++|++++. |++.+-
T Consensus 180 ~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~v----D~miVIGg~~SsNT~kL~eia~~~~~---~t~~Ie~~~el~~~~l 252 (281)
T PF02401_consen 180 RFPELEGPVFNTICYATQNRQEAARELAKEV----DAMIVIGGKNSSNTRKLAEIAKEHGK---PTYHIETADELDPEWL 252 (281)
T ss_dssp HSTCEE-SCC-S--CHHHHHHHHHHHHHCCS----SEEEEES-TT-HHHHHHHHHHHHCTT---CEEEESSGGG--HHHH
T ss_pred hCccccCCCCCCCCHhHHHHHHHHHHHHhhC----CEEEEecCCCCccHHHHHHHHHHhCC---CEEEeCCccccCHhHh
Confidence 3444444588999988777677777777653 3344433333 357777765 555442
Q ss_pred eCCeEEEEEecCCCHHHHHHHHHHHhc
Q 030784 144 KNGEKRETVVGTMPKEFYIAAIERVLK 170 (171)
Q Consensus 144 ~~g~~~~~~~G~~~~~~l~~~i~~~l~ 170 (171)
++.+.++-..|.-+.+.+++.+.+.|+
T Consensus 253 ~~~~~VGItaGASTP~~ii~eVi~~l~ 279 (281)
T PF02401_consen 253 KGVKKVGITAGASTPDWIIEEVIDRLE 279 (281)
T ss_dssp TT-SEEEEEE-TTS-HHHHHHHHHHHH
T ss_pred CCCCEEEEEccCCCCHHHHHHHHHHHh
Confidence 345578888888777777766655543
No 365
>TIGR00597 rad10 DNA repair protein rad10. All proteins in this family for which functions are known are components in a multiprotein endonuclease complex (usually made up of Rad1 and Rad10 homologs). This complex is used primarily for nucleotide excision repair but also for some aspects of recombination repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.41 E-value=88 Score=21.36 Aligned_cols=39 Identities=10% Similarity=0.144 Sum_probs=27.0
Q ss_pred CChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHh
Q 030784 93 WCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAED 131 (171)
Q Consensus 93 wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~ 131 (171)
+.-+=.-+...++++.+.|..+|.++.||+++..+..++
T Consensus 48 H~L~peYi~~Ri~~L~~~~~lrvLL~~VDv~~~~~~L~e 86 (112)
T TIGR00597 48 HNLHPDYIHRRLQSLGKNFNLRILLVQVDVKNPQQALKE 86 (112)
T ss_pred hccCHHHHHHHHHHhccccceeEEEEEEeCCchHHHHHH
Confidence 333334455667777777777799999999988765544
No 366
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=29.30 E-value=3.8e+02 Score=23.20 Aligned_cols=71 Identities=24% Similarity=0.385 Sum_probs=39.4
Q ss_pred hHHHHHhcCC---CcEEEEEEcC-CChhhHHHHHHHHHHHHHhcC-CeEEEEEE-CCCCHhHHHhCCCCccc--EEEEE
Q 030784 73 SWEKSILNSD---TPVLVEFYAS-WCGPCRMVHRVIDEIAGEYAG-RLRCFMVN-TDTDLTIAEDYEIKAVP--VVLLF 143 (171)
Q Consensus 73 ~~~~~~~~~~---~~vvV~f~a~-wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd-~d~~~~l~~~~~i~~~P--t~~~~ 143 (171)
+|.+..++.+ ..+||.|+.+ ....=..+...+.++.++|+. ++.++.+. ..-....+=+.|++..+ +++++
T Consensus 269 ~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~ 347 (499)
T PF05679_consen 269 NFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFPPDSLLFF 347 (499)
T ss_pred HHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCCCCcEEEE
Confidence 4555433333 3688888873 444334466778888888853 46666665 33333444445555444 34444
No 367
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=29.10 E-value=1.3e+02 Score=21.09 Aligned_cols=26 Identities=19% Similarity=0.534 Sum_probs=18.3
Q ss_pred cCCChhhHHHHHHHHHHHHHhcCCeEEEEE
Q 030784 91 ASWCGPCRMVHRVIDEIAGEYAGRLRCFMV 120 (171)
Q Consensus 91 a~wC~~C~~~~~~l~~l~~~~~~~v~~~~v 120 (171)
-+-|.-|.. .++++.+.|++ +.+-.+
T Consensus 105 ~~pC~SC~~---vi~qF~~~~pn-i~~~v~ 130 (133)
T PF14424_consen 105 LPPCESCSN---VIEQFKKDFPN-IKVNVV 130 (133)
T ss_pred CCcChhHHH---HHHHHHHHCCC-cEEEEe
Confidence 455888875 77888999986 544433
No 368
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=29.04 E-value=2.7e+02 Score=21.45 Aligned_cols=51 Identities=10% Similarity=-0.009 Sum_probs=34.6
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC-HhHHHhCCCCcccEEEEEeCCeE
Q 030784 92 SWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD-LTIAEDYEIKAVPVVLLFKNGEK 148 (171)
Q Consensus 92 ~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~-~~l~~~~~i~~~Pt~~~~~~g~~ 148 (171)
.-|++|+++.-.+.+. +-...+..+|..+. +++.+......+|++.. +|..
T Consensus 17 ~~cp~~~rv~i~L~ek----gi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~--~g~~ 68 (236)
T TIGR00862 17 GNCPFSQRLFMILWLK----GVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTY--NTEV 68 (236)
T ss_pred CCCHhHHHHHHHHHHc----CCCcEEEEECCCCCCHHHHHHCcCCCCCEEEE--CCEE
Confidence 4699999988666552 22366677776654 66776667788998854 5544
No 369
>PF04214 DUF411: Protein of unknown function, DUF; InterPro: IPR007332 The function of the members of this bacterial protein family is unknown. Some members may be involved in conferring cation resistance.
Probab=29.03 E-value=1.5e+02 Score=18.45 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=32.0
Q ss_pred EEEECCCCHhHHHhCCCC----cccEEEEEeCCeEEEEEecCCCHHHHHHHHHH
Q 030784 118 FMVNTDTDLTIAEDYEIK----AVPVVLLFKNGEKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 118 ~~vd~d~~~~l~~~~~i~----~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~ 167 (171)
-.++.++-..+-+++||- +-.|.++ +| +.++|-.+.+.+..++++
T Consensus 3 ~~~~~~dl~~ik~~~gVP~~l~SCHTa~v--~g---y~iEGHVPa~~I~~lL~e 51 (70)
T PF04214_consen 3 TVVDTDDLSAIKQRLGVPPELASCHTAVV--GG---YVIEGHVPADDIKRLLAE 51 (70)
T ss_pred EEEEccchHHHHHHhCCCchhccccEEEE--CC---EEEEccCCHHHHHHHHhc
Confidence 345556667788888874 4556665 56 457899999998888764
No 370
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=28.81 E-value=1.3e+02 Score=17.84 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=37.6
Q ss_pred CChhhHHHHHHHHHHHHHhcCCeEEEEEE----CCCCHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHH
Q 030784 93 WCGPCRMVHRVIDEIAGEYAGRLRCFMVN----TDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIER 167 (171)
Q Consensus 93 wC~~C~~~~~~l~~l~~~~~~~v~~~~vd----~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~ 167 (171)
+|+.|++..=.+++..-.+. +.++ .+ .+....+.+--+-..+|++.. .+|+.+. +-..|.++|++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~--~~~v-~~~~~~~~~~~~~~~~~p~~~VP~L~~-~~g~vi~------eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYE--IKVV-PLIPKGEQKPPEFLALNPRGKVPVLVD-PDGTVIN------ESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCE--EEEE-ETTTTBCTTCHBHHHHSTT-SSSEEEE-TTTEEEE------SHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCE--EEEE-eeecCccccChhhhccCcCeEEEEEEE-CCCCEee------CHHHHHHHHhc
Confidence 59999998876666644332 3333 11 122357777777889999976 4776332 44455566554
No 371
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=28.54 E-value=1.2e+02 Score=18.12 Aligned_cols=24 Identities=25% Similarity=0.612 Sum_probs=16.5
Q ss_pred CCCcEEEEEEcCC-----------ChhhHHHHHHH
Q 030784 81 SDTPVLVEFYASW-----------CGPCRMVHRVI 104 (171)
Q Consensus 81 ~~~~vvV~f~a~w-----------C~~C~~~~~~l 104 (171)
.|.+|+-.-..-| |+.|+++...|
T Consensus 23 ~G~pVvALCGk~wvp~rdp~~~PVCP~Ck~iye~l 57 (58)
T PF11238_consen 23 MGTPVVALCGKVWVPTRDPKPFPVCPECKEIYESL 57 (58)
T ss_pred cCceeEeeeCceeCCCCCCCCCCCCcCHHHHHHhc
Confidence 4677766655544 99999876543
No 372
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.05 E-value=51 Score=25.05 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=15.7
Q ss_pred CcEEEEEEcCCChhhHHHHHHHHHH
Q 030784 83 TPVLVEFYASWCGPCRMVHRVIDEI 107 (171)
Q Consensus 83 ~~vvV~f~a~wC~~C~~~~~~l~~l 107 (171)
+..++.|...-|++|++..+.+++.
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~ 109 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKK 109 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHH
Confidence 5566666666677776666666553
No 373
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=27.47 E-value=1.9e+02 Score=21.36 Aligned_cols=37 Identities=8% Similarity=0.042 Sum_probs=26.7
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEEC
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNT 122 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~ 122 (171)
|-+|+..-||.|-.-...|+++.+.++-.|.+.-+..
T Consensus 3 Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 3 IELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 4456677899999999999998887654455445433
No 374
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=27.43 E-value=1.3e+02 Score=20.69 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=28.8
Q ss_pred cccEEEEEeCCeEEEEEecCCCHHHHHHHHHHH
Q 030784 136 AVPVVLLFKNGEKRETVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 136 ~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~ 168 (171)
.+|.+++||+-+-++-..-..+.+++.+.+++.
T Consensus 82 ~~PiL~YFkE~qsiHFlPiiFd~~~L~~~l~~r 114 (116)
T PF11317_consen 82 GFPILFYFKETQSIHFLPIIFDPKQLREQLEER 114 (116)
T ss_pred CCCEEEEEecCCcceeeeeecCHHHHHHHHHHh
Confidence 789999999999899888888888888888764
No 375
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=26.97 E-value=1.3e+02 Score=20.78 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=34.9
Q ss_pred CCChhhHHHHHHHHHHHHHh----cC---CeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEE
Q 030784 92 SWCGPCRMVHRVIDEIAGEY----AG---RLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 92 ~wC~~C~~~~~~l~~l~~~~----~~---~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
..|..|..-...|.+..+++ .. .+.+-.+..+. .+++++| -.-|++.+ +|+.+
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~-~~~~~~~--~~S~~I~i--nG~pi 72 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDE-EEFARQP--LESPTIRI--NGRPI 72 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECCh-HHHhhcc--cCCCeeeE--CCEeh
Confidence 37999987776666665553 21 36666676665 4777777 56677766 66655
No 376
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=26.51 E-value=1.6e+02 Score=23.92 Aligned_cols=42 Identities=14% Similarity=0.045 Sum_probs=32.0
Q ss_pred CCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEEEC
Q 030784 81 SDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMVNT 122 (171)
Q Consensus 81 ~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~ 122 (171)
.|||||+.|-...=+.++.+...+++++++.+- .+.++.+..
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 378998877666668899999999999998763 466666654
No 377
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=26.22 E-value=1.2e+02 Score=21.60 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=24.8
Q ss_pred hcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhc-----CCeEEEEEEC
Q 030784 79 LNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYA-----GRLRCFMVNT 122 (171)
Q Consensus 79 ~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~-----~~v~~~~vd~ 122 (171)
....+|-||-..+ |...|+++...+.++.++.. ..+.++.+|-
T Consensus 59 i~~~kP~vI~v~g-~~~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~~ 106 (150)
T PF14639_consen 59 IEKHKPDVIAVGG-NSRESRKLYDDVRDIVEELDEDEQMPPIPVVIVDD 106 (150)
T ss_dssp HHHH--SEEEE---SSTHHHHHHHHHHHHHHHTTB-TTS-B--EEE---
T ss_pred HHHcCCeEEEEcC-CChhHHHHHHHHHHHHHHhhhcccCCCceEEEECc
Confidence 3455666666644 89999999999998888765 2355555553
No 378
>PF10405 BHD_3: Rad4 beta-hairpin domain 3; InterPro: IPR018328 Mutations in the nucleotide excision repair (NER) pathway can cause the xeroderma pigmentosum skin cancer predisposition syndrome. NER lesions are limited to one DNA strand, but otherwise they are chemically and structurally diverse, being caused by a wide variety of genotoxic chemicals and ultraviolet radiation. The xeroderma pigmentosum C (XPC) protein has a central role in initiating global-genome NER by recognising the lesion and recruiting downstream factors. In NER in eukaryotes, DNA is incised on both sides of the lesion, resulting in the removal of a fragment ~25-30 nucleotides long. This is followed by repair synthesis and ligation. This reaction, in yeast, requires the damage binding factors Rad14, RPA, and the Rad4-Rad23 complex, the transcription factor TFIIH which contains the two DNA helicases Rad3 and Rad25, essential for creating a bubble structure, and the two endonucleases, the Rad1-Rad10 complex and Rad2, which incise the damaged DNA strand on the 5'- and 3'-side of the lesion, respectively []. The crystal structure of the yeast XPC orthologue Rad4 bound to DNA containing a cyclobutane pyrimidine dimer lesion has been determined. The structure shows that Rad4 inserts a beta-hairpin through the DNA duplex, causing the two damaged base pairs to flip out of the double helix. The expelled nucleotides of the undamaged strand are recognised by Rad4, whereas the two cyclobutane pyrimidine dimer-linked nucleotides become disordered. This indicates that the lesions recognised by Rad4/XPC thermodynamically destabilise the double helix in a manner that facilitates the flipping-out of two base pairs []. Homologues of all the above mentioned yeast genes, except for RAD7, RAD16, and MMS19, have been identified in humans, and mutations in these human genes affect NER in a similar fashion as they do in yeast, with the exception of XPC, the human counterpart of yeast RAD4. Deletion of RAD4 causes the same high level of UV sensitivity as do mutations in the other class 1 genes, and rad4 mutants are completely defective in incision. By contrast, XPC is required for the repair of nontranscribed regions of the genome but not for the repair of the transcribed DNA strand. This entry represents the DNA-binding domain of Rad4, which has a beta-hairpin structure []. Rad4 inserts a beta-hairpin through the DNA duplex, causing the two damaged base pairs to flip out of the double helix. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0005634 nucleus; PDB: 2QSG_A 2QSF_A 2QSH_A.
Probab=26.09 E-value=1.3e+02 Score=18.84 Aligned_cols=48 Identities=21% Similarity=0.213 Sum_probs=28.4
Q ss_pred EEEECCCCHhHHHhCCCCcccEEEEE---eCCeEEEEEecCCCHHHHHHHH
Q 030784 118 FMVNTDTDLTIAEDYEIKAVPVVLLF---KNGEKRETVVGTMPKEFYIAAI 165 (171)
Q Consensus 118 ~~vd~d~~~~l~~~~~i~~~Pt~~~~---~~g~~~~~~~G~~~~~~l~~~i 165 (171)
+.+....-..+|++++|...|.+.-| +.|.-...+.|..=.++..+.+
T Consensus 22 vhi~~~~~~~~a~~l~Idya~AV~GF~f~~~g~~~Pv~~GiVV~~e~~~~v 72 (76)
T PF10405_consen 22 VHIKLPGIEKVAKKLGIDYAPAVVGFDFQKGGRAVPVIDGIVVAEEDEEAV 72 (76)
T ss_dssp EEEE-TTHHHHHHHTT---EEEEEEEEE-STT-EEEEEEEEEEEGGGHHHH
T ss_pred EEEecccHHHHHHHcCCcEEeeecceeEccCCCCeEEECeEEEEhhHHHHH
Confidence 34445556788999999999998876 4666677777765443333333
No 379
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=25.85 E-value=53 Score=25.48 Aligned_cols=52 Identities=12% Similarity=-0.004 Sum_probs=37.2
Q ss_pred cCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCC
Q 030784 80 NSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEI 134 (171)
Q Consensus 80 ~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i 134 (171)
..+++++ -+.+.|..++.+...++++.+..+. .....++.++-..+..+|||
T Consensus 219 ~~g~pv~--~~~p~s~~a~~~~~la~ell~~~~~-~~~~~~~~~~~~~~~~~~~~ 270 (275)
T TIGR01287 219 IRKMTVI--EYDPESEQANEYRELAKKIYENTEF-VIPTPLTMDELEEILMKFGI 270 (275)
T ss_pred HcCCceE--EeCCCCHHHHHHHHHHHHHHhcCCC-CCCCCCCHHHHHHHHHHHHH
Confidence 3455553 4578899898888888888776443 55566777777888888887
No 380
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=25.79 E-value=1.5e+02 Score=23.16 Aligned_cols=27 Identities=26% Similarity=0.561 Sum_probs=20.7
Q ss_pred CCCCHhHHHhCCCCcccEEEEEeCCeEE
Q 030784 122 TDTDLTIAEDYEIKAVPVVLLFKNGEKR 149 (171)
Q Consensus 122 ~d~~~~l~~~~~i~~~Pt~~~~~~g~~~ 149 (171)
+|-.++++++++|..+|--+.+. |+..
T Consensus 9 ~dl~~~~~~~~~I~vvPl~I~~~-~~~y 35 (275)
T TIGR00762 9 ADLPPELIEEYGITVVPLTVIID-GKTY 35 (275)
T ss_pred cCCCHHHHHHcCCEEEEEEEEEC-CEEe
Confidence 56678899999999999887764 4433
No 381
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.61 E-value=1.1e+02 Score=23.61 Aligned_cols=62 Identities=18% Similarity=0.302 Sum_probs=39.0
Q ss_pred CCcEEEEEE----cCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCC-CCcccEEE-EEeCCeEE
Q 030784 82 DTPVLVEFY----ASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYE-IKAVPVVL-LFKNGEKR 149 (171)
Q Consensus 82 ~~~vvV~f~----a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~-i~~~Pt~~-~~~~g~~~ 149 (171)
.++|+++.= .|.||..+.+..+|+.. +|.+...|+-.+.++.+..+ ...+|||= +|-+|+.+
T Consensus 138 a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFi 205 (227)
T KOG0911|consen 138 AKPVMLFMKGTPEEPKCGFSRQLVGILQSH------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFI 205 (227)
T ss_pred cCeEEEEecCCCCcccccccHHHHHHHHHc------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEec
Confidence 345555432 35799988877666433 25688888888877766554 34667653 45588654
No 382
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.59 E-value=88 Score=22.66 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=23.8
Q ss_pred EechhhHHHHHhcCCCcEEEEEEcCCChhhH
Q 030784 68 VVTKDSWEKSILNSDTPVLVEFYASWCGPCR 98 (171)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vvV~f~a~wC~~C~ 98 (171)
.++-++.-..+.+.+|++++.|..-|--+-.
T Consensus 119 ~isy~~lr~~I~e~dkp~LilfGTGwGlpde 149 (190)
T COG4752 119 TISYSWLRNEIQERDKPWLILFGTGWGLPDE 149 (190)
T ss_pred cccHHHHHHHHhhcCCcEEEEecCCCCCCHH
Confidence 3445666677788899999999999975543
No 383
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=25.25 E-value=11 Score=28.21 Aligned_cols=39 Identities=15% Similarity=0.359 Sum_probs=27.4
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEEC
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNT 122 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~ 122 (171)
...++=.||.-||..|. .|.+.+-...+++++.-+.+--
T Consensus 5 ~~~~~gk~~iyWCe~cN--lPl~~~~c~~cg~~~~~l~LTp 43 (202)
T COG5270 5 MPVVLGKFPIYWCEKCN--LPLLGRRCSVCGSKVEELRLTP 43 (202)
T ss_pred cceeecccceeehhhCC--CccccccccccCCcceEEEeCC
Confidence 34556679999999998 5677666666666666566543
No 384
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.97 E-value=2.1e+02 Score=24.23 Aligned_cols=55 Identities=13% Similarity=0.226 Sum_probs=34.7
Q ss_pred EechhhHHHHHhcCC--CcEEEEEEcCCChhhHHHH--HHHHHHHHHhc-CCeEEEEEEC
Q 030784 68 VVTKDSWEKSILNSD--TPVLVEFYASWCGPCRMVH--RVIDEIAGEYA-GRLRCFMVNT 122 (171)
Q Consensus 68 ~l~~~~~~~~~~~~~--~~vvV~f~a~wC~~C~~~~--~~l~~l~~~~~-~~v~~~~vd~ 122 (171)
.++-..+.+.+..++ .--...|....||+||.-. ..+.++.++.+ .+|.++.+|.
T Consensus 53 ~ltiG~lid~~~~g~~d~~n~~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~ 112 (420)
T COG3581 53 ILTIGQLIDAIESGEYDIENDAVLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLNS 112 (420)
T ss_pred hhhHHHHHHHHHhCCccccccEEEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEeec
Confidence 455567666665542 1223334445999999654 55666666665 5688888884
No 385
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=24.97 E-value=1.7e+02 Score=22.85 Aligned_cols=47 Identities=21% Similarity=0.141 Sum_probs=30.8
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC-CHhHHHhCCCCcccEEEE
Q 030784 92 SWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT-DLTIAEDYEIKAVPVVLL 142 (171)
Q Consensus 92 ~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~-~~~l~~~~~i~~~Pt~~~ 142 (171)
.+|++|++..-.+++..-. ..+..+|..+ .+++.+..--..+|++..
T Consensus 71 g~cp~s~rV~i~L~ekgi~----ye~~~vdl~~~~~~fl~iNP~GkVPvL~~ 118 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLP----YDMKLVDLTNKPEWFLKISPEGKVPVVKL 118 (265)
T ss_pred CCCcHHHHHHHHHHHcCCC----CEEEEeCcCcCCHHHHhhCCCCCCCEEEE
Confidence 3599999988777555433 4455666644 344555555678999965
No 386
>PF09499 RE_ApaLI: ApaLI-like restriction endonuclease; InterPro: IPR019036 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes R.ApaLI and R.XbaI restriction endonucleases. ApaLI recognises and cleaves the sequence GTGCAC.
Probab=24.93 E-value=2.9e+02 Score=20.59 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=31.7
Q ss_pred hHHHHHhcC-CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC
Q 030784 73 SWEKSILNS-DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG 113 (171)
Q Consensus 73 ~~~~~~~~~-~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~ 113 (171)
.+.+.+... -+|+.|.||-|.-..-.++...|+.+....++
T Consensus 133 trikvi~~aGy~PIrimf~~P~r~~~~~iq~~L~tlY~gvgG 174 (191)
T PF09499_consen 133 TRIKVIKSAGYKPIRIMFYYPNREQAIRIQTTLKTLYNGVGG 174 (191)
T ss_pred HHHHHHHHCCCcceEEEEeCCCHHHHHHHHHHHHHHHHhcCc
Confidence 344445444 47999999999988888888888888877765
No 387
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=24.27 E-value=86 Score=23.40 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=16.3
Q ss_pred eEechhhHHHHHhcCCCcEEEEEEcCC
Q 030784 67 AVVTKDSWEKSILNSDTPVLVEFYASW 93 (171)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vvV~f~a~w 93 (171)
..++-++..+.+.+.++|+++.|.+-|
T Consensus 117 ~~is~~~lr~~l~~~~~P~LllFGTGw 143 (185)
T PF09936_consen 117 NTISYAELRRMLEEEDRPVLLLFGTGW 143 (185)
T ss_dssp S-B-HHHHHHHHHH--S-EEEEE--TT
T ss_pred CCcCHHHHHHHHhccCCeEEEEecCCC
Confidence 456677777777788999999999999
No 388
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=24.15 E-value=1.3e+02 Score=24.40 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=28.8
Q ss_pred CcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC
Q 030784 83 TPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD 125 (171)
Q Consensus 83 ~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~ 125 (171)
..++|++. ||.|++....|+.+.+... .+.++.||+...
T Consensus 77 ~~~lIELG---sG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~ 115 (319)
T TIGR03439 77 GSMLVELG---SGNLRKVGILLEALERQKK-SVDYYALDVSRS 115 (319)
T ss_pred CCEEEEEC---CCchHHHHHHHHHHHhcCC-CceEEEEECCHH
Confidence 34678775 7788998888888875433 488899998754
No 389
>PLN02378 glutathione S-transferase DHAR1
Probab=23.84 E-value=1.7e+02 Score=21.69 Aligned_cols=50 Identities=12% Similarity=0.128 Sum_probs=32.2
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEECC-CCHhHHHhCCCCcccEEEEEeCCe
Q 030784 92 SWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTD-TDLTIAEDYEIKAVPVVLLFKNGE 147 (171)
Q Consensus 92 ~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d-~~~~l~~~~~i~~~Pt~~~~~~g~ 147 (171)
.+|++|+++.-.+++..-. ..+..+|.. ..+++.+...-..+|++.. +|.
T Consensus 18 ~~~p~~~rv~~~L~e~gl~----~e~~~v~~~~~~~~~l~inP~G~VPvL~~--~~~ 68 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLT----YKIHLINLSDKPQWFLDISPQGKVPVLKI--DDK 68 (213)
T ss_pred CCCcchHHHHHHHHHcCCC----CeEEEeCcccCCHHHHHhCCCCCCCEEEE--CCE
Confidence 4599999987766555433 445566653 3345666666778998853 554
No 390
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=23.53 E-value=2.5e+02 Score=20.97 Aligned_cols=74 Identities=16% Similarity=0.309 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHH----hCC-CCcccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHH
Q 030784 95 GPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAE----DYE-IKAVPVVLLF-KNGEKRETVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 95 ~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~----~~~-i~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~ 168 (171)
+.-..|...|+.++..... ++.+.|.|..++.+.+ .|. ++..|...+. -||..+.--.|..+...-+.+-+++
T Consensus 18 gr~~~F~~lw~~l~~~~~~-Lk~lAiSc~~~~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDIG~GTt~aaV~l~~~v 96 (183)
T PF12617_consen 18 GRLAAFERLWQALAPSVPQ-LKLLAISCPDGEGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDIGDGTTRAAVKLAQKV 96 (183)
T ss_pred CccHHHHHHHHHHHhhhhh-ccEEEEECCCCHHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCCCCcHHHHHHHHHHHH
Confidence 3445677777777776554 8888899887766554 343 3445655555 4888776666665555445555544
Q ss_pred h
Q 030784 169 L 169 (171)
Q Consensus 169 l 169 (171)
+
T Consensus 97 ~ 97 (183)
T PF12617_consen 97 L 97 (183)
T ss_pred h
Confidence 3
No 391
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=23.27 E-value=2.3e+02 Score=19.59 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=26.9
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC-----------CHhHHHhC-CCCcccE
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT-----------DLTIAEDY-EIKAVPV 139 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~-----------~~~l~~~~-~i~~~Pt 139 (171)
.+.|||.+.+-+... ...++++.+..+.+..++.+.... -.+++++| ++.-++.
T Consensus 51 ~d~vvi~lGtNd~~~----~~nl~~ii~~~~~~~~ivlv~~~~~~~~~~~~n~~~~~~a~~~~~v~~id~ 116 (150)
T cd01840 51 RKTVVIGLGTNGPFT----KDQLDELLDALGPDRQVYLVNPHVPRPWEPDVNAYLLDAAKKYKNVTIIDW 116 (150)
T ss_pred CCeEEEEecCCCCCC----HHHHHHHHHHcCCCCEEEEEECCCCcchHHHHHHHHHHHHHHCCCcEEecH
Confidence 356677777666643 334444444444323333333321 13466677 6666554
No 392
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=23.27 E-value=2.8e+02 Score=22.31 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=52.2
Q ss_pred EechhhHHHHH---hcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCC---HhHHHhCCCCcccEEE
Q 030784 68 VVTKDSWEKSI---LNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTD---LTIAEDYEIKAVPVVL 141 (171)
Q Consensus 68 ~l~~~~~~~~~---~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~---~~l~~~~~i~~~Pt~~ 141 (171)
.+..+.|.+.+ .+...-+.+.++.++|..-..=+....+|+++.+--+.++.-+..+. -++|++++ .|++.
T Consensus 165 T~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~---~~t~~ 241 (298)
T PRK01045 165 TLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAG---APAYL 241 (298)
T ss_pred CCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHC---CCEEE
Confidence 33445554443 22222233344889998877777778888886442122222222222 24566665 34443
Q ss_pred E----------EeCCeEEEEEecCCCHHHHHHHHHHHh
Q 030784 142 L----------FKNGEKRETVVGTMPKEFYIAAIERVL 169 (171)
Q Consensus 142 ~----------~~~g~~~~~~~G~~~~~~l~~~i~~~l 169 (171)
+ +++-+.++-..|.-+.+.+++.+-+.|
T Consensus 242 Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l 279 (298)
T PRK01045 242 IDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARL 279 (298)
T ss_pred ECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 3 233456777778776666655544433
No 393
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=22.63 E-value=62 Score=18.84 Aligned_cols=16 Identities=19% Similarity=0.009 Sum_probs=12.9
Q ss_pred CCHhHHHhCCCCcccE
Q 030784 124 TDLTIAEDYEIKAVPV 139 (171)
Q Consensus 124 ~~~~l~~~~~i~~~Pt 139 (171)
.-+.+|+++||..+|.
T Consensus 31 ~LKr~CR~~GI~RWP~ 46 (52)
T PF02042_consen 31 TLKRRCRRLGIPRWPY 46 (52)
T ss_pred HHHHHHHHcCCCCCCc
Confidence 3467899999999984
No 394
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.41 E-value=1.9e+02 Score=21.14 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=25.9
Q ss_pred CcEEEEEEcCCChhhHHHHHHHHHHHHHhcC
Q 030784 83 TPVLVEFYASWCGPCRMVHRVIDEIAGEYAG 113 (171)
Q Consensus 83 ~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~ 113 (171)
-..+|..|.-.|.+.-.-.|.|-.-.++|.+
T Consensus 80 ahalilvydiscqpsfdclpewlreie~yan 110 (213)
T KOG0095|consen 80 AHALILVYDISCQPSFDCLPEWLREIEQYAN 110 (213)
T ss_pred cceEEEEEecccCcchhhhHHHHHHHHHHhh
Confidence 3568889999999999999998777777765
No 395
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=22.25 E-value=1.2e+02 Score=22.62 Aligned_cols=26 Identities=27% Similarity=0.626 Sum_probs=16.4
Q ss_pred ChhhHHHHHHHHHHHHHhcCCeEEEEEECC
Q 030784 94 CGPCRMVHRVIDEIAGEYAGRLRCFMVNTD 123 (171)
Q Consensus 94 C~~C~~~~~~l~~l~~~~~~~v~~~~vd~d 123 (171)
||.|+.++ .++++- ++.+.++..|..
T Consensus 157 CGaC~ewL---~KIAe~-np~f~v~mFd~t 182 (193)
T PF14421_consen 157 CGACKEWL---RKIAEA-NPDFRVYMFDDT 182 (193)
T ss_pred chHHHHHH---HHHHHh-CCCeEEEEecCC
Confidence 88888754 555664 444776666543
No 396
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=22.19 E-value=1.4e+02 Score=19.22 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=20.4
Q ss_pred EEcCC---Chhh--HHH---HHHHHHHHHHhcC-CeEEEEEECC
Q 030784 89 FYASW---CGPC--RMV---HRVIDEIAGEYAG-RLRCFMVNTD 123 (171)
Q Consensus 89 f~a~w---C~~C--~~~---~~~l~~l~~~~~~-~v~~~~vd~d 123 (171)
||..| |..| +.. ...+++-.++|++ -|.++.+|..
T Consensus 28 ywt~w~lp~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~ 71 (84)
T cd00307 28 FRTSSWQSCGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPK 71 (84)
T ss_pred cHhhhcCCCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 44444 6666 444 4455555677776 3777777654
No 397
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=22.11 E-value=3.6e+02 Score=22.22 Aligned_cols=64 Identities=6% Similarity=-0.011 Sum_probs=44.9
Q ss_pred HHHHHhcCCCcEEEEEEcCCChhhHHHHHHHHHHHHHhc--CCeEEEEEECCCCHhHHHhCCCCcccEEEEE
Q 030784 74 WEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYA--GRLRCFMVNTDTDLTIAEDYEIKAVPVVLLF 143 (171)
Q Consensus 74 ~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~ 143 (171)
..+++.....+++|+=....+ .+.+..+++... ..|.|..+|..+.+.|.+-|.....=.++.|
T Consensus 19 ~l~L~~~gy~v~~vDNl~n~~------~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V~Hf 84 (343)
T KOG1371|consen 19 VLALLKRGYGVVIVDNLNNSY------LESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAVMHF 84 (343)
T ss_pred HHHHHhCCCcEEEEecccccc------hhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceEEee
Confidence 345555566777776554433 566666666655 5699999999988888888888776666666
No 398
>PF06616 BsuBI_PstI_RE: BsuBI/PstI restriction endonuclease C-terminus; InterPro: IPR009528 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the C terminus of bacterial enzymes similar to type II restriction endonucleases BsuBI and PstI (3.1.21.4 from EC). The enzymes of the BsuBI restriction/modification (R/M) system recognise the target sequence 5'CTGCAG and are functionally identical with those of the PstI R/M system [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 2IXS_B.
Probab=21.86 E-value=3.2e+02 Score=22.18 Aligned_cols=53 Identities=19% Similarity=0.364 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEEECCC------CHhHHHhCCCC-----cccEEEEEeCCe
Q 030784 95 GPCRMVHRVIDEIAGEYAGRLRCFMVNTDT------DLTIAEDYEIK-----AVPVVLLFKNGE 147 (171)
Q Consensus 95 ~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~------~~~l~~~~~i~-----~~Pt~~~~~~g~ 147 (171)
++..-.+.++++++..+-.+-.+++|.-.. +.++++++|+. .+|-+++|..++
T Consensus 162 ~hn~L~kaIIEeFaprF~pg~~vLyvgDtg~K~~~~d~~~l~~LGi~i~~h~klPDvVl~~~~k 225 (306)
T PF06616_consen 162 PHNELIKAIIEEFAPRFAPGPEVLYVGDTGDKVLYFDEELLKELGITIDAHGKLPDVVLYDEEK 225 (306)
T ss_dssp TTHHHHHHHHHTHHHHHSTT-EEEEEE-SSSS-EEE-HHHHHHC-----TT----SEEEEETTT
T ss_pred cchHHHHHHHHHHHHhhCCCceEEEEcCCCCceeeccHHHHHHcCCCccccCCCCCEEEEeCCC
Confidence 667777888999999887555556655322 36888999985 789999986544
No 399
>PRK14451 acylphosphatase; Provisional
Probab=21.70 E-value=2.3e+02 Score=18.16 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=20.0
Q ss_pred HhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHHH
Q 030784 126 LTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERV 168 (171)
Q Consensus 126 ~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~ 168 (171)
..+|.++++.++-.-. .+|.......| +.+.+.++++.+
T Consensus 23 ~~~A~~~gl~G~V~N~--~dG~Vei~~qG--~~~~i~~f~~~l 61 (89)
T PRK14451 23 KKLAEQLMISGWARNL--ADGRVEVFACG--KEDKLEEFYTWL 61 (89)
T ss_pred HHHHHHhCCEEEEEEC--CCCCEEEEEEE--CHHHHHHHHHHH
Confidence 3566667766543221 35655555555 444455555544
No 400
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=21.62 E-value=1.9e+02 Score=17.23 Aligned_cols=51 Identities=16% Similarity=0.055 Sum_probs=29.6
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC---CHhHHHhCCCCcccEEEEEeCCeE
Q 030784 92 SWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT---DLTIAEDYEIKAVPVVLLFKNGEK 148 (171)
Q Consensus 92 ~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~---~~~l~~~~~i~~~Pt~~~~~~g~~ 148 (171)
..|+.|++.+-.+++..-+ .....++..+ .+++.+......+|++.. +|+.
T Consensus 8 ~~s~~s~~v~~~L~~~gl~----~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~ 61 (73)
T cd03043 8 NYSSWSLRPWLLLKAAGIP----FEEILVPLYTPDTRARILEFSPTGKVPVLVD--GGIV 61 (73)
T ss_pred CCCHHHHHHHHHHHHcCCC----CEEEEeCCCCccccHHHHhhCCCCcCCEEEE--CCEE
Confidence 4567777766555544333 3334555432 355666666789999853 6644
No 401
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=21.54 E-value=1.5e+02 Score=17.10 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=25.4
Q ss_pred hHHHHHhcCCCcEEEEEEcCCChhhHHHHHH--HHHHH
Q 030784 73 SWEKSILNSDTPVLVEFYASWCGPCRMVHRV--IDEIA 108 (171)
Q Consensus 73 ~~~~~~~~~~~~vvV~f~a~wC~~C~~~~~~--l~~l~ 108 (171)
.|+......+...++.+...-|+-|....|. +.++.
T Consensus 4 ~Y~rl~~~~~g~~va~v~~~~C~gC~~~l~~~~~~~i~ 41 (56)
T PF02591_consen 4 EYERLRKRKGGVAVARVEGGTCSGCHMELPPQELNEIR 41 (56)
T ss_pred HHHHHHhhcCCcEEEEeeCCccCCCCEEcCHHHHHHHH
Confidence 4555444447889999999999999877753 44443
No 402
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=21.15 E-value=4.7e+02 Score=21.49 Aligned_cols=82 Identities=12% Similarity=0.016 Sum_probs=49.9
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCCCHhHHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHH
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFY 161 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l 161 (171)
++-.+|.++.....+=+.+...+.+++++.+-.++. .+...-...-+-.+.-.++||..+--.-+.++........+++
T Consensus 249 g~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~-~~~~gGtDa~~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D~ 327 (350)
T TIGR03107 249 GEGTLLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQY-YVAKGGTDAGAAHLKNSGVPSTTIGVCARYIHSHQTLYSIDDF 327 (350)
T ss_pred CCCceEEEecCCCCCCHHHHHHHHHHHHHcCCCcEE-ecCCCCchHHHHHHhCCCCcEEEEccCcccccChhheeeHHHH
Confidence 444455677778888899999999999997755554 2221111111113455689998886555555555555555555
Q ss_pred HHH
Q 030784 162 IAA 164 (171)
Q Consensus 162 ~~~ 164 (171)
.+.
T Consensus 328 ~~~ 330 (350)
T TIGR03107 328 LAA 330 (350)
T ss_pred HHH
Confidence 543
No 403
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=21.06 E-value=6.1e+02 Score=22.76 Aligned_cols=39 Identities=8% Similarity=0.010 Sum_probs=26.8
Q ss_pred EEEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC
Q 030784 86 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT 124 (171)
Q Consensus 86 vV~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~ 124 (171)
++..-..-=+....++..++++.++.+=.+.+...+..+
T Consensus 509 ILvaCGsGiGTStmva~kIkk~Lke~GI~veV~~~~Vse 547 (602)
T PRK09548 509 ILAVCGQGQGSSMMMKMKIKKYLDKRGIPIIMDSCAVND 547 (602)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHHcCCCeEEEEechHh
Confidence 444555555778888889999999877445666666543
No 404
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=20.98 E-value=4.1e+02 Score=20.75 Aligned_cols=40 Identities=25% Similarity=0.163 Sum_probs=27.7
Q ss_pred hHHHhCCCCccc--EEEEE-eCCeEEEEEecCCCHHHHHHHHH
Q 030784 127 TIAEDYEIKAVP--VVLLF-KNGEKRETVVGTMPKEFYIAAIE 166 (171)
Q Consensus 127 ~l~~~~~i~~~P--t~~~~-~~g~~~~~~~G~~~~~~l~~~i~ 166 (171)
++-+.+|+...- -++++ .+|++.....|..+.+++....+
T Consensus 205 ~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 205 DIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWK 247 (252)
T ss_pred HHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHH
Confidence 555667776544 34444 58999999899988888766543
No 405
>PRK04011 peptide chain release factor 1; Provisional
Probab=20.61 E-value=1.1e+02 Score=25.88 Aligned_cols=30 Identities=10% Similarity=0.295 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCeEEEEEECCCCHhHHHhCC
Q 030784 104 IDEIAGEYAGRLRCFMVNTDTDLTIAEDYE 133 (171)
Q Consensus 104 l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~ 133 (171)
|-+.++.++.+|.|+.-+.++...|.+.||
T Consensus 372 l~e~a~~~g~~v~iis~~~e~G~qL~~~fG 401 (411)
T PRK04011 372 LSELAEQSGTKVEVISTDTEEGEQLLKAFG 401 (411)
T ss_pred HHHHHHHcCCEEEEECCCChhHHHHHHcCC
Confidence 344455556667777777777788888775
No 406
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=20.29 E-value=1.3e+02 Score=24.59 Aligned_cols=70 Identities=20% Similarity=0.240 Sum_probs=36.5
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHhcCCeEEEEEECCC-------------CHhHHHhCCCCccc----EEEEEeCCeEE
Q 030784 87 VEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDT-------------DLTIAEDYEIKAVP----VVLLFKNGEKR 149 (171)
Q Consensus 87 V~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~d~-------------~~~l~~~~~i~~~P----t~~~~~~g~~~ 149 (171)
|..|..+-.+-......+-++++.+++++ +.=|+.- -.++++.-+-...| ++.+.++|++.
T Consensus 231 v~I~~~Df~di~eVD~KLvklAk~~~g~l--vTND~NLnKVae~qgV~vLNINDLAnAVkP~vlpGe~l~v~iiK~GkE~ 308 (356)
T COG4956 231 VEIYEGDFEDIPEVDSKLVKLAKVTGGKL--VTNDFNLNKVAELQGVQVLNINDLANAVKPVVLPGEELTVQIIKDGKEP 308 (356)
T ss_pred EEEccCCccchhhHHHHHHHHHHHhCCEE--EeccCcHHHHHhhcCCceecHHHHHHHhCCcccCCCeeEEEEeecCccc
Confidence 44455555555556666666666665422 1111111 12333333333455 66777888887
Q ss_pred EEEecCCCH
Q 030784 150 ETVVGTMPK 158 (171)
Q Consensus 150 ~~~~G~~~~ 158 (171)
....|+.+.
T Consensus 309 ~QGVgYLdD 317 (356)
T COG4956 309 GQGVGYLDD 317 (356)
T ss_pred CCceEEecC
Confidence 776666554
No 407
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=20.27 E-value=2.5e+02 Score=20.15 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=24.1
Q ss_pred CCcEEEEEEcCCChhhHHHHHHHHHHHHHhcC-CeEEEEE
Q 030784 82 DTPVLVEFYASWCGPCRMVHRVIDEIAGEYAG-RLRCFMV 120 (171)
Q Consensus 82 ~~~vvV~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~v 120 (171)
++-..+++--+-|++|+ ..+..++++.+- .+.++..
T Consensus 99 g~~~tm~Vdr~vC~~C~---~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCG---GDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred CCeEEEEECcccchHHH---HHHHHHHHHcCCCeEEEEec
Confidence 44556666688999999 567777888763 2444433
No 408
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=20.12 E-value=27 Score=19.61 Aligned_cols=19 Identities=37% Similarity=0.648 Sum_probs=11.3
Q ss_pred CChhhHHHHHHHHHHHHHh
Q 030784 93 WCGPCRMVHRVIDEIAGEY 111 (171)
Q Consensus 93 wC~~C~~~~~~l~~l~~~~ 111 (171)
+|.||+.=.+.+.++.++.
T Consensus 18 kC~PCR~Gt~~l~~~l~~i 36 (46)
T PF10589_consen 18 KCTPCREGTRQLAEILEKI 36 (46)
T ss_dssp --HHHHCCCCHHHHHHHHH
T ss_pred CCCCcHhHHHHHHHHHHHH
Confidence 6889987666666655544
Done!