BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030785
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr,
Minimized Mean Structure
pdb|3GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, 46
Structures
Length = 70
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 52/61 (85%)
Query: 80 KSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 139
K GVR+RPWGK+AAEIRDPA+ G+RVWLGTF++ DAA AYD AAFRMRG +A+LNFP
Sbjct: 4 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63
Query: 140 L 140
L
Sbjct: 64 L 64
>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding
Domain Of Aterf1 And Gcc-Box Dna, Minimized Average
Structure
Length = 63
Score = 96.7 bits (239), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 52/61 (85%)
Query: 80 KSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 139
K GVR+RPWGK+AAEIRDPA+ G+RVWLGTF++ DAA AYD AAFRMRG +A+LNFP
Sbjct: 1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
Query: 140 L 140
L
Sbjct: 61 L 61
>pdb|2AUM|A Chain A, Active Site Ser115ala Mutant Of Ld-Carboxypeptidase
pdb|2AUM|B Chain B, Active Site Ser115ala Mutant Of Ld-Carboxypeptidase
Length = 317
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 23 GDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLGSSNWTESPQKSS 82
G L P S L + P + E E I L CLGS +T+ P+K
Sbjct: 211 GTLGGLHAPAGSILVLEDVGEPYYRLERSLWQLLESIDARQLGAICLGS--FTDCPRKEV 268
Query: 83 EGVRRRPWGKYAAEIRDP 100
R +G+YAA I P
Sbjct: 269 AHSLERIFGEYAAAIEVP 286
>pdb|1ZRS|A Chain A, Wild-Type Ld-Carboxypeptidase
pdb|1ZRS|B Chain B, Wild-Type Ld-Carboxypeptidase
Length = 317
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 23 GDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLGSSNWTESPQKSS 82
G L P S L + P + E E I L CLGS +T+ P+K
Sbjct: 211 GTLGGLHAPAGSILVLEDVGEPYYRLERSLWQLLESIDARQLGAICLGS--FTDCPRKEV 268
Query: 83 EGVRRRPWGKYAAEIRDP 100
R +G+YAA I P
Sbjct: 269 AHSLERIFGEYAAAIEVP 286
>pdb|2AUN|A Chain A, Active Site His285ala Mutant Of Ld-Carboxypeptidase
pdb|2AUN|B Chain B, Active Site His285ala Mutant Of Ld-Carboxypeptidase
Length = 317
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 23 GDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLGSSNWTESPQKSS 82
G L P S L + P + E E I L CLGS +T+ P+K
Sbjct: 211 GTLGGLHAPAGSILVLEDVGEPYYRLERSLWQLLESIDARQLGAICLGS--FTDCPRKEV 268
Query: 83 EGVRRRPWGKYAAEIRDP 100
R +G+YAA I P
Sbjct: 269 AHSLERIFGEYAAAIEVP 286
>pdb|1ZL0|A Chain A, Structure Of Protein Of Unknown Function Pa5198 From
Pseudomonas Aeruginosa
pdb|1ZL0|B Chain B, Structure Of Protein Of Unknown Function Pa5198 From
Pseudomonas Aeruginosa
Length = 311
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 23 GDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLGSSNWTESPQKSS 82
G L P S L + P + E E I L CLGS +T+ P+K
Sbjct: 203 GTLGGLHAPAGSILVLEDVGEPYYRLERSLWQLLESIDARQLGAICLGS--FTDCPRKEV 260
Query: 83 EGVRRRPWGKYAAEIRDP 100
R +G+YAA I P
Sbjct: 261 AHSLERIFGEYAAAIEVP 278
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 84 GVRRRPWGKYAAEIRD-PARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEA 142
G+ R P GK EIRD +R G+ ++D D D + RG K N
Sbjct: 496 GLSRSPIGKAMFEIRDYSSRDGNN---KSYDYD-------DDSEISFRGNKNYNNRSQNR 545
Query: 143 GADSPPAKNSRKRRR 157
D P + S RR
Sbjct: 546 DYDDEPFRRSNNNRR 560
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,952,951
Number of Sequences: 62578
Number of extensions: 198708
Number of successful extensions: 374
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 7
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)