Query 030785
Match_columns 171
No_of_seqs 151 out of 1066
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 06:45:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.1E-26 3.7E-31 160.0 6.3 62 81-142 2-63 (63)
2 3igm_B PF14_0633 protein; AP2 95.1 0.012 4.1E-07 41.7 2.5 46 77-126 3-58 (77)
3 1u3e_M HNH homing endonuclease 81.3 0.2 6.8E-06 38.8 -1.0 38 82-123 109-146 (174)
4 1z1b_A Integrase; protein-DNA 79.7 2.2 7.6E-05 34.4 4.7 42 83-129 14-55 (356)
5 3jtz_A Integrase; four strande 57.3 20 0.00068 24.9 5.1 44 85-129 28-75 (88)
6 3ju0_A Phage integrase; four s 38.2 46 0.0016 23.9 4.6 44 85-129 28-75 (108)
7 1x60_A Sporulation-specific N- 34.4 20 0.00068 23.4 1.9 23 105-127 46-68 (79)
8 1uta_A FTSN, MSGA, cell divisi 32.6 30 0.001 22.9 2.6 23 105-127 46-68 (81)
9 1b69_A Protein (integrase); in 31.4 42 0.0014 22.9 3.2 27 79-107 9-35 (69)
10 2yy0_A C-MYC-binding protein; 29.3 12 0.00039 24.2 0.0 11 12-22 2-12 (53)
11 2ftc_I Mitochondrial ribosomal 22.6 1.3E+02 0.0043 22.1 4.7 35 93-131 80-115 (118)
12 1x4e_A RNA binding motif, sing 21.9 57 0.002 20.7 2.4 34 107-140 49-83 (85)
13 2cph_A RNA binding motif prote 20.8 29 0.001 23.1 0.8 35 107-141 60-96 (107)
14 3eik_A Tata-box-binding protei 20.1 1.4E+02 0.0049 24.2 4.9 48 79-130 74-122 (218)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.93 E-value=1.1e-26 Score=160.04 Aligned_cols=62 Identities=69% Similarity=1.246 Sum_probs=59.3
Q ss_pred ceeeeEECCCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 030785 81 SSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEA 142 (171)
Q Consensus 81 ~yRGV~~~~~GKW~A~I~~~~~kGk~i~LGtFdT~eeAArAYD~AA~k~~G~~A~lNFp~~~ 142 (171)
+||||+++++|||+|+|++|.++|+++|||+|+|+||||+|||.|+++++|.+|.+|||+++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 79999999899999999999877899999999999999999999999999999999999874
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=95.07 E-value=0.012 Score=41.73 Aligned_cols=46 Identities=17% Similarity=0.092 Sum_probs=31.9
Q ss_pred CCCCceeeeEECCC-CcEEEEEecCCCCCeEEe-------cCCC--CCHHHHHHHHHHHH
Q 030785 77 SPQKSSEGVRRRPW-GKYAAEIRDPARKGSRVW-------LGTF--DSDVDAAKAYDSAA 126 (171)
Q Consensus 77 ~~~S~yRGV~~~~~-GKW~A~I~~~~~kGk~i~-------LGtF--dT~eeAArAYD~AA 126 (171)
.++|+|+||+|.+. +.|.|+-.+ +|++.. +| | +.+..||..|-+..
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rrsRtF~~k~yG-f~~e~Ak~~AIef~k~l 58 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRRSRTFHPKHFN-MDKEKARLAAVEFMKTV 58 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE---TTEEEEEEECCTTHH-HHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcEEeecCCceEEEEEec---CCeEeeeeechhhcC-cCHHHHHHHHHHHHHHH
Confidence 46899999999888 999999998 455542 44 4 35555555554443
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=81.30 E-value=0.2 Score=38.83 Aligned_cols=38 Identities=11% Similarity=-0.094 Sum_probs=28.8
Q ss_pred eeeeEECCCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHH
Q 030785 82 SEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYD 123 (171)
Q Consensus 82 yRGV~~~~~GKW~A~I~~~~~kGk~i~LGtFdT~eeAArAYD 123 (171)
++||.+...++|.+.|.. + +..+||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence 467755222679999987 3 4567899999999999964
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=79.67 E-value=2.2 Score=34.42 Aligned_cols=42 Identities=19% Similarity=0.113 Sum_probs=31.3
Q ss_pred eeeEECCCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 030785 83 EGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRM 129 (171)
Q Consensus 83 RGV~~~~~GKW~A~I~~~~~kGk~i~LGtFdT~eeAArAYD~AA~k~ 129 (171)
.||++++.|.|+.+... +|+++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~~~---~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR---TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT---TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec---CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 36877777999988764 678899996 8888877766654444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=57.30 E-value=20 Score=24.87 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=28.9
Q ss_pred eEECCCC--cEEEEEecCCCCCeEEecCCCC--CHHHHHHHHHHHHHHh
Q 030785 85 VRRRPWG--KYAAEIRDPARKGSRVWLGTFD--SDVDAAKAYDSAAFRM 129 (171)
Q Consensus 85 V~~~~~G--KW~A~I~~~~~kGk~i~LGtFd--T~eeAArAYD~AA~k~ 129 (171)
|+..+.| .|.-+.+..++ -+++-||.|. |..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk-~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGK-ESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTE-EEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCe-EEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4455554 38888876332 3568899997 6777777666655544
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=38.18 E-value=46 Score=23.92 Aligned_cols=44 Identities=23% Similarity=0.217 Sum_probs=27.8
Q ss_pred eEECCCC--cEEEEEecCCCCCeEEecCCCC--CHHHHHHHHHHHHHHh
Q 030785 85 VRRRPWG--KYAAEIRDPARKGSRVWLGTFD--SDVDAAKAYDSAAFRM 129 (171)
Q Consensus 85 V~~~~~G--KW~A~I~~~~~kGk~i~LGtFd--T~eeAArAYD~AA~k~ 129 (171)
|+..+.| .|.-+.+..++ -+++-||.|. |..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK-~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKK-QRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTE-EEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCc-eEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 3455554 38888876332 3567899997 5677766666555444
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=34.38 E-value=20 Score=23.44 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=19.1
Q ss_pred eEEecCCCCCHHHHHHHHHHHHH
Q 030785 105 SRVWLGTFDSDVDAAKAYDSAAF 127 (171)
Q Consensus 105 k~i~LGtFdT~eeAArAYD~AA~ 127 (171)
-+|++|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 57899999999999988766554
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=32.63 E-value=30 Score=22.85 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=19.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHH
Q 030785 105 SRVWLGTFDSDVDAAKAYDSAAF 127 (171)
Q Consensus 105 k~i~LGtFdT~eeAArAYD~AA~ 127 (171)
-+|.+|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 58999999999999988766554
No 9
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=31.44 E-value=42 Score=22.88 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=20.8
Q ss_pred CCceeeeEECCCCcEEEEEecCCCCCeEE
Q 030785 79 QKSSEGVRRRPWGKYAAEIRDPARKGSRV 107 (171)
Q Consensus 79 ~S~yRGV~~~~~GKW~A~I~~~~~kGk~i 107 (171)
.--+.|++.++.|+|+....+. .|++.
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~--~Gkr~ 35 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDS--FGEPQ 35 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECT--TSSEE
T ss_pred CccCCCeEEccCCcEEEEEEcC--CCCEE
Confidence 4557899999889999999985 34443
No 10
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.25 E-value=12 Score=24.21 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=0.0
Q ss_pred hhHHHHHhhhc
Q 030785 12 SILEFIRQFLL 22 (171)
Q Consensus 12 ~~le~i~qhLl 22 (171)
..||+|+|||=
T Consensus 2 ~AlefIk~~LG 12 (53)
T 2yy0_A 2 SALDFLKHHLG 12 (53)
T ss_dssp -----------
T ss_pred cHHHHHHHHcC
Confidence 46999999995
No 11
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=22.58 E-value=1.3e+02 Score=22.08 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=27.9
Q ss_pred EEEEEecCCCCCeEEe-cCCCCCHHHHHHHHHHHHHHhcC
Q 030785 93 YAAEIRDPARKGSRVW-LGTFDSDVDAAKAYDSAAFRMRG 131 (171)
Q Consensus 93 W~A~I~~~~~kGk~i~-LGtFdT~eeAArAYD~AA~k~~G 131 (171)
|+|.|.. |+-++ ++...+++.|..|...|+.+|=+
T Consensus 80 wva~Vk~----G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 80 YVTPVKA----GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEECC----CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 9999985 56554 56568899999999999988743
No 12
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.91 E-value=57 Score=20.66 Aligned_cols=34 Identities=26% Similarity=0.150 Sum_probs=23.4
Q ss_pred EecCCCCCHHHHHHHHHH-HHHHhcCCCCCCCCCC
Q 030785 107 VWLGTFDSDVDAAKAYDS-AAFRMRGRKAILNFPL 140 (171)
Q Consensus 107 i~LGtFdT~eeAArAYD~-AA~k~~G~~A~lNFp~ 140 (171)
+-.=.|.+.++|..|... --..+.|+..+..+|.
T Consensus 49 ~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 49 YGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred EEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 444578999999999874 3345666766666654
No 13
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.79 E-value=29 Score=23.08 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=22.2
Q ss_pred EecCCCCCHHHHHHHHHHH--HHHhcCCCCCCCCCCC
Q 030785 107 VWLGTFDSDVDAAKAYDSA--AFRMRGRKAILNFPLE 141 (171)
Q Consensus 107 i~LGtFdT~eeAArAYD~A--A~k~~G~~A~lNFp~~ 141 (171)
+-.=.|.+.++|.+|.... -..+.|..-.+.|...
T Consensus 60 ~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~ 96 (107)
T 2cph_A 60 FGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96 (107)
T ss_dssp EEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred eEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCC
Confidence 4455789999999987654 3445555544555433
No 14
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=20.11 E-value=1.4e+02 Score=24.22 Aligned_cols=48 Identities=25% Similarity=0.100 Sum_probs=37.6
Q ss_pred CCceeeeEEC-CCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHHhc
Q 030785 79 QKSSEGVRRR-PWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMR 130 (171)
Q Consensus 79 ~S~yRGV~~~-~~GKW~A~I~~~~~kGk~i~LGtFdT~eeAArAYD~AA~k~~ 130 (171)
..+|-||..| ..-+-.+-|.. .||-+.-|. .++++|..|.++.+..+.
T Consensus 74 Pe~Fpglv~Rl~~Pk~t~LIF~---SGKiV~TGA-kS~e~a~~A~~ki~~~L~ 122 (218)
T 3eik_A 74 PKRFAAVIMRIREPKTTALIFA---SGKMVITGA-KSEKSSRMAAQRYAKIIH 122 (218)
T ss_dssp TTTCSSEEEEETTTTEEEEECT---TSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCcEEEEEEC---CCeEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 4578897544 44778888887 788888887 679999999999887774
Done!