BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030786
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DFN1|NDUF3_XENTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Xenopus tropicalis GN=ndufaf3 PE=2 SV=1
Length = 183
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 63/109 (57%)
Query: 58 QGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCG 117
+ Y+ GF +NG + G I +L W + +I LS+F ++ P EIL++G G
Sbjct: 66 ETYSSQGFIINGDKVVGPCAVIPKAILQWNVGSYKDINLESLSLFHMLSPRIEILVVGTG 125
Query: 118 RYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 166
+E ++P + +F+R G+ +E D+ NA +T+N L E RI AAAL+P
Sbjct: 126 DRVERLDPNILKFMRQKGVAVEVQDTANACATFNFLVSERRITAAALIP 174
>sp|O08776|NDUF3_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Rattus norvegicus GN=Ndufaf3 PE=2 SV=1
Length = 185
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%)
Query: 43 QINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIF 102
+I+L+ N + Y GFT+NG + G + ++ W +IT SIF
Sbjct: 47 RISLLQNEFPQAVYIDSYNSRGFTINGNRVFGPCALLPQTVVQWNVGSHQDITEESFSIF 106
Query: 103 QLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAA 162
++ P EI+++G G E ++ ++ Q +R G+ +E D+ NA +T+N L EGR+ A
Sbjct: 107 WMLEPRIEIVVVGTGNKTERLHSQVLQAMRQRGIAVEIQDTPNACATFNFLCHEGRVTGA 166
Query: 163 ALLP 166
AL+P
Sbjct: 167 ALIP 170
>sp|Q9JKL4|NDUF3_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Mus musculus GN=Ndufaf3 PE=2 SV=1
Length = 185
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 68/124 (54%)
Query: 43 QINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIF 102
+I+L+ + + Y+ GFT+ G + G + + ++ W +IT S+F
Sbjct: 47 RISLLQSEFPQAVYIDSYSSRGFTICGNRVFGPCVLLPQTVVQWNVGSHQDITEESFSLF 106
Query: 103 QLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAA 162
++ P EI+++G G E ++P++ Q +R G+ +E D+ NA +T+N L EGR+ A
Sbjct: 107 WMLEPRIEIVVVGTGNKTERLHPQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGA 166
Query: 163 ALLP 166
AL+P
Sbjct: 167 ALIP 170
>sp|Q9BU61|NDUF3_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Homo sapiens GN=NDUFAF3 PE=1 SV=1
Length = 184
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 65/124 (52%)
Query: 43 QINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIF 102
+I+L+ + Y GF +NG + G + + ++ W +IT + S+F
Sbjct: 46 RISLLQREAAQAMYIDSYNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLF 105
Query: 103 QLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAA 162
L+ P EI+++G G E + ++ Q +R G+ +E D+ NA +T+N L EGR+ A
Sbjct: 106 WLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGA 165
Query: 163 ALLP 166
AL+P
Sbjct: 166 ALIP 169
>sp|Q2HJI2|NDUF3_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Bos taurus GN=NDUFAF3 PE=2 SV=1
Length = 184
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 65/124 (52%)
Query: 43 QINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIF 102
+I+L+ + Y+ GF VNG + G + ++ W + +IT S+F
Sbjct: 46 RISLLQRESPLAMYIDSYSSRGFVVNGNRVFGPCALLPQSVVQWNVGSYQDITEESFSLF 105
Query: 103 QLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAA 162
++ P EI+++G G E + P + + +R G+ +E D+ NA +T+N L EGR+ A
Sbjct: 106 WMLEPRIEIVVVGTGDRTERLQPHVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGA 165
Query: 163 ALLP 166
AL+P
Sbjct: 166 ALIP 169
>sp|A1L1F1|NDUF3_DANRE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Danio rerio GN=ndufaf3 PE=2 SV=1
Length = 174
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%)
Query: 60 YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 119
Y+ GF +NG G + +L W S+I+ LS+F L+ P E+L+LG G
Sbjct: 62 YSPRGFNINGNTVFGPCAVLPPAILQWNVGSHSDISVESLSLFYLLEPQIEVLVLGTGAR 121
Query: 120 IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVA 161
E ++ E+ + ++ G+ +E D+ NA +T+N L+ E R+ A
Sbjct: 122 TERLHAEVLEELKKRGIAVEVQDTPNACATFNFLSSEKRLAA 163
>sp|P29962|Y1784_RHOCB Uncharacterized protein RCAP_rcc01784 OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003)
GN=RCAP_rcc01784 PE=4 SV=1
Length = 124
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 55 LRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILIL 114
L GY F + G + G LL + WT F + L+ + + ++L+
Sbjct: 12 LPIDGYGPGFFRIAGAVHRGGLLIHAEAAMPWT--GFDD-----LAALRALAGQVDLLLC 64
Query: 115 GCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 166
G G I + L+ + + G+ E + + +AA YN+L EGR V AALLP
Sbjct: 65 GMGADIAHLPKGLQVELEALGVMAEPMSTASAARHYNVLLSEGRRVGAALLP 116
>sp|P48508|GSH0_RAT Glutamate--cysteine ligase regulatory subunit OS=Rattus norvegicus
GN=Gclm PE=1 SV=1
Length = 274
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 78 CIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMK 137
CI L W+ S+I+P+ LVR P++L +E +NP+ R+ ++ + K
Sbjct: 46 CIQKTLNEWS----SQISPD------LVREFPDVLECTMSHAVEKINPDEREEMKVSA-K 94
Query: 138 LEAIDSRNAASTYNILNEEGRIVAAALL 165
L + S +++ST N ++ ++ A L
Sbjct: 95 LFIVGSNSSSSTRNAVDMACSVLGVAQL 122
>sp|Q2T9Y6|GSH0_BOVIN Glutamate--cysteine ligase regulatory subunit OS=Bos taurus GN=GCLM
PE=2 SV=1
Length = 274
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 78 CIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMK 137
CI L W+ S+I+P+ L+R P++L +E +NP+ R+ ++ + K
Sbjct: 46 CIQKTLNEWS----SQISPD------LIREFPDVLECTVSHAVEKINPDEREEMKVSA-K 94
Query: 138 LEAIDSRNAASTYNILNEEGRIVAAALL 165
L + S +++ST N ++ ++ A L
Sbjct: 95 LFIVGSNSSSSTRNAVDMACSVLGVAQL 122
>sp|Q54P72|Y4753_DICDI Probable acid phosphatase DDB_G0284753 OS=Dictyostelium discoideum
GN=DDB_G0284753 PE=3 SV=1
Length = 464
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 102 FQLVRPIPEILILGCGRYIEPVNPELR 128
F+ R PE+ ILG GR+++ +N EL+
Sbjct: 300 FKSARYFPEMSILGIGRFVDDLNKELK 326
>sp|P18152|MP13_FRATH 13 kDa major membrane protein OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=FTL_0420 PE=4 SV=1
Length = 123
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 57 FQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPI-PEILILG 115
F+ Y F +N +Y L+ +L + K +I S L+ PEI+++G
Sbjct: 15 FKEYVKGRFILNIGEYNHPLILSATQVLEYQ-DKIDDIQSIKKSHLDLILATNPEIILIG 73
Query: 116 CG--RYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL 165
G + + P+ E+ I G ++ + S A TYN+L E R V+ ++
Sbjct: 74 TGEKQLLPPL--EIINQIAKAGKSVDFMASDTACKTYNLLVNENRNVSCIII 123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,270,664
Number of Sequences: 539616
Number of extensions: 2589798
Number of successful extensions: 5714
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5705
Number of HSP's gapped (non-prelim): 13
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)