Query 030788
Match_columns 171
No_of_seqs 126 out of 1028
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:35:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0638 PRE1 20S proteasome, a 100.0 1.5E-46 3.2E-51 290.7 17.5 167 3-170 17-187 (236)
2 cd03752 proteasome_alpha_type_ 100.0 1.6E-46 3.5E-51 287.0 17.2 168 3-170 17-189 (213)
3 cd03751 proteasome_alpha_type_ 100.0 1.6E-46 3.5E-51 286.7 16.7 166 3-170 18-188 (212)
4 cd03755 proteasome_alpha_type_ 100.0 2.3E-46 5E-51 285.0 17.0 167 3-170 15-186 (207)
5 cd03750 proteasome_alpha_type_ 100.0 6.6E-46 1.4E-50 286.1 16.8 166 3-170 15-185 (227)
6 KOG0176 20S proteasome, regula 100.0 2.3E-46 5E-51 272.6 11.9 165 4-170 23-197 (241)
7 PTZ00246 proteasome subunit al 100.0 3.8E-45 8.3E-50 286.0 17.2 168 3-170 19-191 (253)
8 cd03759 proteasome_beta_type_3 100.0 2.7E-44 5.8E-49 271.4 20.4 157 14-170 2-160 (195)
9 cd03753 proteasome_alpha_type_ 100.0 7E-45 1.5E-49 278.0 17.1 166 3-170 15-190 (213)
10 cd03749 proteasome_alpha_type_ 100.0 6.7E-45 1.5E-49 277.6 16.9 164 3-170 15-185 (211)
11 cd03754 proteasome_alpha_type_ 100.0 6.7E-45 1.4E-49 278.4 16.8 167 3-170 16-192 (215)
12 cd03756 proteasome_alpha_arche 100.0 8.8E-45 1.9E-49 277.0 17.0 166 3-170 16-186 (211)
13 cd03761 proteasome_beta_type_5 100.0 1.4E-43 3.1E-48 266.0 20.8 154 16-170 1-155 (188)
14 cd01911 proteasome_alpha prote 100.0 2.1E-44 4.5E-49 274.6 16.4 167 3-170 15-186 (209)
15 TIGR03633 arc_protsome_A prote 100.0 2.5E-44 5.5E-49 276.8 16.8 166 3-170 17-187 (224)
16 PRK03996 proteasome subunit al 100.0 2.7E-44 5.8E-49 279.4 16.7 166 3-170 24-194 (241)
17 cd03758 proteasome_beta_type_2 100.0 1.9E-43 4.1E-48 266.3 20.6 155 16-170 2-159 (193)
18 cd03757 proteasome_beta_type_1 100.0 2.6E-43 5.7E-48 269.0 20.3 162 9-170 2-173 (212)
19 TIGR03691 20S_bact_alpha prote 100.0 7.8E-44 1.7E-48 274.0 16.6 162 1-170 13-181 (228)
20 TIGR03634 arc_protsome_B prote 100.0 7.2E-43 1.6E-47 261.4 20.9 155 15-170 1-156 (185)
21 cd03762 proteasome_beta_type_6 100.0 9.8E-43 2.1E-47 261.4 20.7 155 16-170 1-155 (188)
22 cd03760 proteasome_beta_type_4 100.0 1.3E-42 2.7E-47 262.6 20.3 157 14-170 1-163 (197)
23 cd03763 proteasome_beta_type_7 100.0 3.7E-42 7.9E-47 258.5 20.8 154 16-170 1-154 (189)
24 cd03764 proteasome_beta_archea 100.0 1.5E-41 3.2E-46 255.0 20.9 154 16-170 1-155 (188)
25 TIGR03690 20S_bact_beta protea 100.0 1.1E-41 2.4E-46 261.3 20.5 157 14-170 1-163 (219)
26 PTZ00488 Proteasome subunit be 100.0 1.5E-41 3.3E-46 264.2 21.2 162 8-170 32-194 (247)
27 cd01912 proteasome_beta protea 100.0 2.4E-41 5.1E-46 253.8 20.8 155 16-170 1-156 (189)
28 KOG0184 20S proteasome, regula 100.0 5.8E-42 1.3E-46 253.4 14.3 165 3-169 22-191 (254)
29 cd01906 proteasome_protease_Hs 100.0 1.6E-40 3.5E-45 247.6 20.3 155 16-170 1-158 (182)
30 PF00227 Proteasome: Proteasom 100.0 2.1E-40 4.6E-45 248.5 18.4 159 12-170 1-166 (190)
31 cd03765 proteasome_beta_bacter 100.0 3.3E-40 7.1E-45 254.5 19.7 153 16-170 1-173 (236)
32 KOG0183 20S proteasome, regula 100.0 4.8E-42 1E-46 252.7 8.7 167 3-170 18-191 (249)
33 KOG0178 20S proteasome, regula 100.0 2.2E-41 4.7E-46 248.7 11.2 167 4-170 20-192 (249)
34 KOG0181 20S proteasome, regula 100.0 3.6E-40 7.7E-45 239.7 7.8 164 4-169 21-189 (233)
35 KOG0177 20S proteasome, regula 100.0 3.6E-37 7.7E-42 223.1 13.0 156 16-171 2-160 (200)
36 KOG0173 20S proteasome, regula 100.0 1.8E-35 3.9E-40 222.5 13.9 167 4-171 26-192 (271)
37 KOG0863 20S proteasome, regula 100.0 7.2E-36 1.6E-40 222.2 10.9 162 4-169 21-189 (264)
38 KOG0175 20S proteasome, regula 100.0 7.4E-35 1.6E-39 219.8 12.5 158 12-170 68-226 (285)
39 KOG0174 20S proteasome, regula 100.0 1.5E-34 3.2E-39 210.2 12.0 164 7-170 11-174 (224)
40 KOG0182 20S proteasome, regula 100.0 4.8E-34 1E-38 210.1 13.7 167 3-170 23-197 (246)
41 cd01901 Ntn_hydrolase The Ntn 100.0 2.1E-31 4.6E-36 193.3 19.6 154 16-170 1-157 (164)
42 PRK05456 ATP-dependent proteas 100.0 9.5E-32 2.1E-36 198.4 16.9 143 15-170 1-148 (172)
43 KOG0179 20S proteasome, regula 100.0 1.1E-31 2.4E-36 197.3 15.9 167 5-171 19-197 (235)
44 cd01913 protease_HslV Protease 100.0 1.2E-30 2.5E-35 191.5 17.4 141 16-166 1-146 (171)
45 KOG0180 20S proteasome, regula 100.0 1.6E-30 3.5E-35 186.0 15.5 157 13-169 6-164 (204)
46 TIGR03692 ATP_dep_HslV ATP-dep 100.0 1.1E-29 2.4E-34 186.3 16.7 140 16-165 1-145 (171)
47 KOG0185 20S proteasome, regula 100.0 3.1E-30 6.6E-35 192.6 11.0 163 9-171 35-204 (256)
48 COG5405 HslV ATP-dependent pro 99.5 8E-14 1.7E-18 99.5 9.7 147 13-168 2-152 (178)
49 COG3484 Predicted proteasome-t 99.3 1.2E-10 2.5E-15 86.4 11.4 154 15-170 1-174 (255)
50 PF09894 DUF2121: Uncharacteri 93.5 2.4 5.2E-05 31.8 12.0 123 15-170 1-153 (194)
51 KOG3361 Iron binding protein i 92.7 0.21 4.5E-06 35.2 3.9 44 127-170 71-114 (157)
52 COG1754 Uncharacterized C-term 66.4 4.7 0.0001 32.2 2.1 54 115-171 77-133 (298)
53 COG4079 Uncharacterized protei 60.2 83 0.0018 24.8 11.3 124 16-170 2-154 (293)
54 PF11211 DUF2997: Protein of u 57.8 17 0.00036 21.0 2.9 32 127-158 3-34 (48)
55 COG5469 Predicted metal-bindin 42.7 8 0.00017 27.4 -0.1 71 64-134 38-116 (143)
56 COG0822 IscU NifU homolog invo 35.0 57 0.0012 23.5 3.4 44 126-170 45-89 (150)
57 PF15643 Tox-PL-2: Papain fold 33.0 1.5E+02 0.0033 19.9 5.7 75 88-168 18-95 (100)
58 PF04539 Sigma70_r3: Sigma-70 31.7 94 0.002 19.0 3.7 28 72-99 4-31 (78)
59 PRK14065 exodeoxyribonuclease 31.7 54 0.0012 21.3 2.5 24 147-170 31-54 (86)
60 PRK11325 scaffold protein; Pro 30.8 1E+02 0.0023 21.3 4.1 43 128-170 46-88 (127)
61 PF07499 RuvA_C: RuvA, C-termi 29.2 75 0.0016 17.8 2.6 28 142-169 12-40 (47)
62 COG4990 Uncharacterized protei 29.1 39 0.00084 25.3 1.7 58 88-160 117-185 (195)
63 PF05593 RHS_repeat: RHS Repea 28.4 57 0.0012 17.3 1.9 19 126-144 8-26 (38)
64 KOG2449 Methylmalonate semiald 28.0 2.3E+02 0.0051 20.4 5.8 73 64-136 5-81 (157)
65 COG4537 ComGC Competence prote 26.7 1.4E+02 0.0031 20.1 3.9 27 68-94 50-77 (107)
66 KOG1930 Focal adhesion protein 26.6 36 0.00077 28.9 1.2 14 158-171 215-228 (483)
67 KOG1593 Asparaginase [Amino ac 25.9 1.9E+02 0.004 23.3 5.0 56 58-116 254-309 (349)
68 PF10632 He_PIG_assoc: He_PIG 25.9 96 0.0021 15.8 2.3 21 113-134 6-26 (29)
69 PF01592 NifU_N: NifU-like N t 25.5 2.3E+02 0.0049 19.4 5.4 54 117-170 29-86 (126)
70 PF14593 PH_3: PH domain; PDB: 24.7 69 0.0015 21.6 2.2 16 122-137 36-51 (104)
71 PF06057 VirJ: Bacterial virul 24.2 1.8E+02 0.004 21.9 4.6 33 88-120 44-77 (192)
72 cd01262 PH_PDK1 3-Phosphoinosi 24.1 58 0.0012 21.4 1.6 13 122-134 24-36 (89)
73 TIGR01643 YD_repeat_2x YD repe 24.1 74 0.0016 16.9 1.9 6 128-133 31-36 (42)
74 PF00851 Peptidase_C6: Helper 23.1 3.7E+02 0.008 23.2 6.6 130 17-150 286-436 (453)
75 cd05781 DNA_polB_B3_exo DEDDy 23.0 58 0.0013 24.2 1.7 59 17-76 27-86 (188)
76 PF13645 YkuD_2: L,D-transpept 22.4 3.3E+02 0.0072 20.2 6.1 62 88-149 10-75 (176)
77 PF09862 DUF2089: Protein of u 21.9 81 0.0017 21.7 2.1 24 148-171 89-112 (113)
78 TIGR01999 iscU FeS cluster ass 21.5 1.8E+02 0.004 19.9 3.9 43 128-170 44-86 (124)
79 PF13368 Toprim_C_rpt: Topoiso 21.2 1.7E+02 0.0037 17.4 3.2 19 153-171 26-45 (61)
80 cd00712 AsnB Glutamine amidotr 20.9 3E+02 0.0065 20.6 5.4 58 15-75 30-87 (220)
81 PF14688 DUF4461: Domain of un 20.6 2.6E+02 0.0057 22.7 5.2 49 83-139 258-311 (313)
82 KOG0083 GTPase Rab26/Rab37, sm 20.5 1.2E+02 0.0026 21.7 2.8 40 12-55 6-45 (192)
No 1
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-46 Score=290.70 Aligned_cols=167 Identities=28% Similarity=0.455 Sum_probs=161.8
Q ss_pred ccccCCCCCCccC-ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMG-TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQH 81 (171)
Q Consensus 3 ~~~~ya~~a~~~g-~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 81 (171)
.|.|||.+++.+| +|+|||+++||||||+|+|.++++++..++.+|||+|+|||+|++||+.+|++.++++++.+++.|
T Consensus 17 ~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~ 96 (236)
T COG0638 17 FQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLY 96 (236)
T ss_pred HHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHH
Confidence 4778999999886 999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCC---CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhc
Q 030788 82 TIQLGQPATVKVAANLVRLLSYNNK---NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (171)
Q Consensus 82 ~~~~~~~~~~~~la~~l~~~~~~~~---~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 158 (171)
++.++++++++.+++.+++++|.++ |||+++++|||+|+ ++|+||.+||+|++.+++++|+|+|++.++++||+.|
T Consensus 97 ~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y 175 (236)
T COG0638 97 RLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEY 175 (236)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhc
Confidence 9999999999999999999999997 69999999999999 8999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhhc
Q 030788 159 KEGMTKEEAEVC 170 (171)
Q Consensus 159 ~~~~s~~ea~~l 170 (171)
+++|+++||++|
T Consensus 176 ~~~m~~eeai~l 187 (236)
T COG0638 176 REDLSLEEAIEL 187 (236)
T ss_pred cCCCCHHHHHHH
Confidence 999999999976
No 2
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-46 Score=287.01 Aligned_cols=168 Identities=20% Similarity=0.280 Sum_probs=160.3
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
.|.|||++|+++|+|+|||+++||||||+|++.+.++++.+.+.+||++|+++++|++||..+|++.+.+++|.+++.|+
T Consensus 17 ~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 96 (213)
T cd03752 17 YQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYL 96 (213)
T ss_pred hHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999988766688999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
+.++++++++.+++.++..+|.+ .|||++++|++|||++.||+||.+||+|++.+++++|+|+++.+++++||+.
T Consensus 97 ~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~ 176 (213)
T cd03752 97 YSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQD 176 (213)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHh
Confidence 99999999999999999987765 3799999999999975799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhhc
Q 030788 158 WKEGMTKEEAEVC 170 (171)
Q Consensus 158 ~~~~~s~~ea~~l 170 (171)
|+++||++||++|
T Consensus 177 y~~~ms~eea~~l 189 (213)
T cd03752 177 YKDDMTLEEALAL 189 (213)
T ss_pred ccCCCCHHHHHHH
Confidence 9999999999986
No 3
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-46 Score=286.66 Aligned_cols=166 Identities=20% Similarity=0.241 Sum_probs=157.0
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
.|.|||++|+++|+|+|||+++||||||+|++.++.+. ..++.+||++|++|++|+++|+.+|++.+++++|.+++.|+
T Consensus 18 ~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~-~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~ 96 (212)
T cd03751 18 FQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLY-EPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYR 96 (212)
T ss_pred hHHHHHHHHHhcCCCEEEEEeCCEEEEEEEcccccccc-CcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999987555 35678999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
+.++++++++.+++.+++++|.+ .|||++++|+||||+ +||+||.+||+|++.+++++|+|+++.+++++||+.
T Consensus 97 ~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~-~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~ 175 (212)
T cd03751 97 DNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS-DGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKL 175 (212)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC-CcCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHh
Confidence 99999999999999999987775 489999999999997 689999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhhc
Q 030788 158 WKEGMTKEEAEVC 170 (171)
Q Consensus 158 ~~~~~s~~ea~~l 170 (171)
|+++||++||+++
T Consensus 176 ~~~dms~eeai~l 188 (212)
T cd03751 176 KFSELTCREAVKE 188 (212)
T ss_pred ccCCCCHHHHHHH
Confidence 9999999999975
No 4
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-46 Score=284.98 Aligned_cols=167 Identities=23% Similarity=0.313 Sum_probs=157.8
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
.|.|||++|+++|+|+|||+++||||||+|++.+.++ +.+.+.+||++|++|++|++||+.+|++.+.+.+|.+++.|+
T Consensus 15 ~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 93 (207)
T cd03755 15 FQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKL-QDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHR 93 (207)
T ss_pred eHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcc-cCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999987764 345578999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
+.++++++++.+++.+++++|++ .|||++++|+||||++++|+||.+||+|++.+++++|+|+++.+++++||+.
T Consensus 94 ~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~ 173 (207)
T cd03755 94 LTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKN 173 (207)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhh
Confidence 99999999999999999999776 3799999999999986799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhhc
Q 030788 158 WKEGMTKEEAEVC 170 (171)
Q Consensus 158 ~~~~~s~~ea~~l 170 (171)
|+++||++||+++
T Consensus 174 ~~~~ms~eeai~l 186 (207)
T cd03755 174 YKEEMTRDDTIKL 186 (207)
T ss_pred ccCCCCHHHHHHH
Confidence 9999999999986
No 5
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.6e-46 Score=286.09 Aligned_cols=166 Identities=20% Similarity=0.319 Sum_probs=157.8
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
.|.|||++|+++|+|+|||+++||||||+|++.+.+ ++.+++.+||++|++|++|+++|+.+|++.+++.+|.+++.|+
T Consensus 15 ~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~-l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 93 (227)
T cd03750 15 VQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSP-LIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYY 93 (227)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCcc-ccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999865 5567788999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
+.++++++++.+++.+++.+|.+ .||+++++|+||||+ .+|+||.+||+|++.+++++|+|+|+++++++||+.
T Consensus 94 ~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~ 172 (227)
T cd03750 94 LVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKR 172 (227)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhh
Confidence 99999999999999999999775 389999999999997 699999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhhc
Q 030788 158 WKEGMTKEEAEVC 170 (171)
Q Consensus 158 ~~~~~s~~ea~~l 170 (171)
|+++||++||++|
T Consensus 173 ~~~~ms~eeai~l 185 (227)
T cd03750 173 YNEDLELEDAIHT 185 (227)
T ss_pred ccCCCCHHHHHHH
Confidence 9999999999986
No 6
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-46 Score=272.63 Aligned_cols=165 Identities=25% Similarity=0.355 Sum_probs=157.5
Q ss_pred cccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (171)
Q Consensus 4 ~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (171)
|.|||.+|++-|+|.|||+.++|||||+++|++++++. +++.+||++|++||+|++||+.+|++.+++++|.++++|++
T Consensus 23 QVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~-p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f 101 (241)
T KOG0176|consen 23 QVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLME-PSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWF 101 (241)
T ss_pred ehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccC-chhhhhheehhhceeeeccccccchHHHHHHHHHHhhhcee
Confidence 67999999999999999999999999999999999885 67899999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcC----------CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHH
Q 030788 84 QLGQPATVKVAANLVRLLSYNN----------KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGF 153 (171)
Q Consensus 84 ~~~~~~~~~~la~~l~~~~~~~----------~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~ 153 (171)
.|+++++++.+.+.++++.-.+ .|||||++|+||+|+ +||+||..||+|++..+++-|||+|++-+.+.
T Consensus 102 ~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~h~dPSGtf~~~~AKAIGSgsEga~~~ 180 (241)
T KOG0176|consen 102 TYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLYHLDPSGTFIRYKAKAIGSGSEGAESS 180 (241)
T ss_pred ecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEEEeCCCCceEEecceeccccchHHHHH
Confidence 9999999999999999876443 599999999999997 79999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHhhc
Q 030788 154 FDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 154 Le~~~~~~~s~~ea~~l 170 (171)
|++.|+++|+++||+.+
T Consensus 181 L~~e~~~~ltL~ea~~~ 197 (241)
T KOG0176|consen 181 LQEEYHKDLTLKEAEKI 197 (241)
T ss_pred HHHHHhhcccHHHHHHH
Confidence 99999999999999864
No 7
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=3.8e-45 Score=285.96 Aligned_cols=168 Identities=18% Similarity=0.306 Sum_probs=160.4
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
.|.|||++|+++|+|+|||+++||||||+|++.++++++.+++.+||++|+++++|+++|..+|++.+.+.+|.++..|+
T Consensus 19 ~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 98 (253)
T PTZ00246 19 YQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYR 98 (253)
T ss_pred hHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999988877778999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCC-----CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~~-----~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
+.++++++++.+++.++..+|.++ |||+|++||||||++.+|+||.+||+|++.+++++|+|+++.+++++||+.
T Consensus 99 ~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~ 178 (253)
T PTZ00246 99 YTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQE 178 (253)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHh
Confidence 999999999999999999887763 799999999999975799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhhc
Q 030788 158 WKEGMTKEEAEVC 170 (171)
Q Consensus 158 ~~~~~s~~ea~~l 170 (171)
|+++||++||++|
T Consensus 179 ~~~~ms~eeai~l 191 (253)
T PTZ00246 179 WKEDLTLEQGLLL 191 (253)
T ss_pred ccCCCCHHHHHHH
Confidence 9999999999986
No 8
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.7e-44 Score=271.35 Aligned_cols=157 Identities=20% Similarity=0.308 Sum_probs=149.9
Q ss_pred cCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 030788 14 MGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKV 93 (171)
Q Consensus 14 ~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (171)
+|+|+|||+++||||||+|++.+.++++.+++.+||++|++|++|+++|..+|++.+.+++|.+++.|+++++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 69999999999999999999999998887778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-CCceeeEEEEEEeCCCCcEEEEECCCCceeeeC-eEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 94 AANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQP-FAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 94 la~~l~~~~~~~~-~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+|+++++++|.++ +||++++||||||++++|+||.+||+|++.++. ++|+|+|+++++++||+.|+++||++||++|
T Consensus 82 la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 160 (195)
T cd03759 82 FSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFET 160 (195)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999988764 799999999999976789999999999998876 9999999999999999999999999999987
No 9
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7e-45 Score=277.96 Aligned_cols=166 Identities=25% Similarity=0.347 Sum_probs=157.5
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
.|-|||++|+++|+|+|||+++||||||+|++.+.+.. ..++.+||++|+++++|++||+.+|++.+.+.++.+++.|+
T Consensus 15 ~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~-~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 93 (213)
T cd03753 15 FQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLM-EPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHR 93 (213)
T ss_pred hHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCc-CCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999987654 46678999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC----------CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHH
Q 030788 83 IQLGQPATVKVAANLVRLLSYNN----------KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYG 152 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~----------~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~ 152 (171)
+.++++++++.+++.+++++|.+ .|||++++|+||||+ +||+||.+||+|++.+++++|+|++++++++
T Consensus 94 ~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~ 172 (213)
T cd03753 94 FTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRCDAKAIGSGSEGAQS 172 (213)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeecccEEEECCCcHHHHH
Confidence 99999999999999999998864 279999999999997 7899999999999999999999999999999
Q ss_pred HhhhhcCCCCCHHHHhhc
Q 030788 153 FFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 153 ~Le~~~~~~~s~~ea~~l 170 (171)
+|++.|+++||++||++|
T Consensus 173 ~L~~~~~~~ls~eeai~l 190 (213)
T cd03753 173 SLQEKYHKDMTLEEAEKL 190 (213)
T ss_pred HHHhhccCCCCHHHHHHH
Confidence 999999999999999987
No 10
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.7e-45 Score=277.65 Aligned_cols=164 Identities=19% Similarity=0.261 Sum_probs=154.4
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
.|.|||++|+++|+|+|||+++||||||+|+|.+.++ ..+.+||++|+++++|++||+.+|++.+.++++.+++.|+
T Consensus 15 ~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 91 (211)
T cd03749 15 FQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSEL---SSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYR 91 (211)
T ss_pred eHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCcccc---CCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999988763 3466999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
++++++++++.+++.++..+|.+ .|||+|++||+|||+ .||+||.+||+|++.+++++|+|++++.++++||+.
T Consensus 92 ~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~-~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~ 170 (211)
T cd03749 92 FVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE-SGPHLFQTCPSGNYFEYKATSIGARSQSARTYLERH 170 (211)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC-CCCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHh
Confidence 99999999999999999988763 579999999999997 689999999999999999999999999999999999
Q ss_pred cC--CCCCHHHHhhc
Q 030788 158 WK--EGMTKEEAEVC 170 (171)
Q Consensus 158 ~~--~~~s~~ea~~l 170 (171)
|+ ++||++||+++
T Consensus 171 ~~~~~~ms~ee~i~~ 185 (211)
T cd03749 171 FEEFEDCSLEELIKH 185 (211)
T ss_pred hccccCCCHHHHHHH
Confidence 99 69999999986
No 11
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.7e-45 Score=278.37 Aligned_cols=167 Identities=18% Similarity=0.177 Sum_probs=155.3
Q ss_pred ccccCCCCCCcc-CceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSM-GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQH 81 (171)
Q Consensus 3 ~~~~ya~~a~~~-g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 81 (171)
.|.|||++|+++ |+|+|||+++||||||+|+|.+.+++. .++.+||++|+++++|++||+.+|++.+.+++|.++..|
T Consensus 16 ~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~-~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~ 94 (215)
T cd03754 16 YQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLID-PSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEF 94 (215)
T ss_pred eHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccC-CcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHH
Confidence 478999999975 789999999999999999999887554 447899999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhh
Q 030788 82 TIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQ 156 (171)
Q Consensus 82 ~~~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~ 156 (171)
+++++++++++.+|+.+++++|.+ .|||++++|+||||++++|+||.+||+|++.+++++|+|+++++++++||+
T Consensus 95 ~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~ 174 (215)
T cd03754 95 KYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEK 174 (215)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHH
Confidence 999999999999999999987654 369999999999997679999999999999999999999999999999999
Q ss_pred hcCCC--C--CHHHHhhc
Q 030788 157 AWKEG--M--TKEEAEVC 170 (171)
Q Consensus 157 ~~~~~--~--s~~ea~~l 170 (171)
.|+++ | |++||++|
T Consensus 175 ~~~~~~~~~~s~eeai~l 192 (215)
T cd03754 175 KLKKKPDLIESYEETVEL 192 (215)
T ss_pred HhccccccCCCHHHHHHH
Confidence 99985 7 99999986
No 12
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.8e-45 Score=277.03 Aligned_cols=166 Identities=26% Similarity=0.371 Sum_probs=157.4
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
.|.|||++|+++|+|+|||+++||||||+|++.+.++ +.+++.+||++|+++++|++||+.+|++.+.+.++.+++.|+
T Consensus 16 ~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~ 94 (211)
T cd03756 16 YQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKL-VEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHR 94 (211)
T ss_pred hHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcc-cCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999998654 456788999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
+.++++++++.+++.+++.+|.+ .|||++++||||||+ ++|+||.+||+|++.+++++|+|+++++++++||+.
T Consensus 95 ~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 173 (211)
T cd03756 95 LTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKE 173 (211)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhh
Confidence 99999999999999999988776 369999999999998 699999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhhc
Q 030788 158 WKEGMTKEEAEVC 170 (171)
Q Consensus 158 ~~~~~s~~ea~~l 170 (171)
|+|+||++||+++
T Consensus 174 ~~~~m~~~ea~~l 186 (211)
T cd03756 174 YKEDMSLEEAIEL 186 (211)
T ss_pred ccCCCCHHHHHHH
Confidence 9999999999986
No 13
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-43 Score=265.96 Aligned_cols=154 Identities=29% Similarity=0.452 Sum_probs=148.9
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
+|+|||+++||||||+|++.+++.++.+++.+|||+|++|++++++|+.+|++.+++++|.+++.|++.++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998887788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 96 NLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 96 ~~l~~~~~~~~-~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+++++++|.+| .||++++|+||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||++|
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 155 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDL 155 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 99999999986 57999999999997 7999999999999999999999999999999999999999999999986
No 14
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=2.1e-44 Score=274.59 Aligned_cols=167 Identities=21% Similarity=0.316 Sum_probs=158.4
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
+|-|||++++.+|+|+|||+++||||+|+|++.+.+.. ..++.+||++|+++++++++|..+|++.+.+.++.++..|+
T Consensus 15 ~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~-~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~ 93 (209)
T cd01911 15 FQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLL-DPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYR 93 (209)
T ss_pred eHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCcccc-CCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998754 46788999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
..++++++++.+|+++++.+|.+ .||++++++|||||++++|+||.+||.|++.+++++++|+++.+++++||+.
T Consensus 94 ~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~ 173 (209)
T cd01911 94 YTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKR 173 (209)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHh
Confidence 99999999999999999988755 3699999999999986799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhhc
Q 030788 158 WKEGMTKEEAEVC 170 (171)
Q Consensus 158 ~~~~~s~~ea~~l 170 (171)
|+++||++||+++
T Consensus 174 ~~~~ms~~ea~~l 186 (209)
T cd01911 174 YKKDLTLEEAIKL 186 (209)
T ss_pred cccCCCHHHHHHH
Confidence 9999999999986
No 15
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=2.5e-44 Score=276.79 Aligned_cols=166 Identities=22% Similarity=0.364 Sum_probs=157.6
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
.|.|||++|+++|+|+|||+++||||||+|+|.+.+ ++..++.+||++|+++++|++||+.+|++.+.+.++.++..|+
T Consensus 17 ~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 95 (224)
T TIGR03633 17 YQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSK-LVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINR 95 (224)
T ss_pred eHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCcc-ccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999865 4556788999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
+.++++++++.+++.+++.+|.+ .|||++++||||+|+ ++|+||.+||.|++.+++++|+|+++.+++++||+.
T Consensus 96 ~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~ 174 (224)
T TIGR03633 96 LTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKE 174 (224)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHh
Confidence 99999999999999999998776 479999999999997 799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhhc
Q 030788 158 WKEGMTKEEAEVC 170 (171)
Q Consensus 158 ~~~~~s~~ea~~l 170 (171)
|+++||++||++|
T Consensus 175 ~~~~~~~eeai~l 187 (224)
T TIGR03633 175 YREDLSLDEAIEL 187 (224)
T ss_pred ccCCCCHHHHHHH
Confidence 9999999999986
No 16
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2.7e-44 Score=279.40 Aligned_cols=166 Identities=22% Similarity=0.342 Sum_probs=157.5
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
.|.|||++|+++|+|+|||+++||||||+|++.+.+ ++..++.+||++|+++++|++||..+|++.++++++.+++.|+
T Consensus 24 ~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 102 (241)
T PRK03996 24 YQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSP-LIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINR 102 (241)
T ss_pred hHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCc-ccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999965 4456788999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
+.++++++++.+++.+++.+|.+ .|||++++|+||||+ +||+||.+||+|++.+++++|+|++++.++++||+.
T Consensus 103 ~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~ 181 (241)
T PRK03996 103 LTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKN 181 (241)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCcHHHHHHHHHh
Confidence 99999999999999999998766 379999999999998 689999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhhc
Q 030788 158 WKEGMTKEEAEVC 170 (171)
Q Consensus 158 ~~~~~s~~ea~~l 170 (171)
|+++||++||++|
T Consensus 182 ~~~~~s~eeai~l 194 (241)
T PRK03996 182 YKEDLSLEEAIEL 194 (241)
T ss_pred cccCCCHHHHHHH
Confidence 9999999999986
No 17
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-43 Score=266.32 Aligned_cols=155 Identities=28% Similarity=0.446 Sum_probs=148.3
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
+|+|||+++||||||+|+|.+.+.++.+.+.+|||+|++++++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 78999999999999999999998877888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC---CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 96 NLVRLLSYNN---KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 96 ~~l~~~~~~~---~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+++++++|.+ +|||++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l 159 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALEL 159 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHH
Confidence 9999998764 25999999999999767999999999999999999999999999999999999999999999986
No 18
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.6e-43 Score=269.04 Aligned_cols=162 Identities=23% Similarity=0.289 Sum_probs=153.9
Q ss_pred CCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 030788 9 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQP 88 (171)
Q Consensus 9 ~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 88 (171)
.+.+++|+|+|||+++||||||+|++.++++++.+++.+||++|+++++|++||..+|++.+.+.++.+++.|++.++++
T Consensus 2 ~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~ 81 (212)
T cd03757 2 SPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKE 81 (212)
T ss_pred CCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCC
Confidence 35678999999999999999999999999998878889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCC-CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcC--------
Q 030788 89 ATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWK-------- 159 (171)
Q Consensus 89 ~~~~~la~~l~~~~~~~~-~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~-------- 159 (171)
++++.+++++++++|.+| +||++++||||||++++|+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 82 i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~ 161 (212)
T cd03757 82 MSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVE 161 (212)
T ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCC
Confidence 999999999999998865 59999999999997678999999999999999999999999999999999985
Q ss_pred -CCCCHHHHhhc
Q 030788 160 -EGMTKEEAEVC 170 (171)
Q Consensus 160 -~~~s~~ea~~l 170 (171)
++||++||++|
T Consensus 162 ~~~ms~eea~~l 173 (212)
T cd03757 162 RTPLSLEEAVSL 173 (212)
T ss_pred CCCCCHHHHHHH
Confidence 89999999986
No 19
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=7.8e-44 Score=274.04 Aligned_cols=162 Identities=15% Similarity=0.240 Sum_probs=150.5
Q ss_pred CCccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHH
Q 030788 1 MDLKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQ 80 (171)
Q Consensus 1 ~~~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~ 80 (171)
|.+|+|||++|+++|+|+|||+++||||||+|++. .+.+|||+|++||+|+++|+.+|++.+++.++.+++.
T Consensus 13 ~~~~~EYA~kav~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~ 84 (228)
T TIGR03691 13 MRDRAELARKGIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADM 84 (228)
T ss_pred HhhHHHHHHHHHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999962 3578999999999999999999999999999999999
Q ss_pred HHHHcC-CCCCHHHHHHHHHHHHhc----CCCCceeeEEEEEEeC-CCCcEEEEECCCCceeeeC-eEEeccchHHHHHH
Q 030788 81 HTIQLG-QPATVKVAANLVRLLSYN----NKNFLQTGMIVGGWDK-YEGGKIYGVPLGGTIIEQP-FAIGGSGSSYLYGF 153 (171)
Q Consensus 81 ~~~~~~-~~~~~~~la~~l~~~~~~----~~~p~~v~~liaG~d~-~~~~~Ly~vd~~G~~~~~~-~~a~G~g~~~~~~~ 153 (171)
|++.++ .+++++.+|+.+++.++. ..|||+|++|+||||+ +.||+||.+||+|++.+++ ++|+|++++.++++
T Consensus 85 ~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~ 164 (228)
T TIGR03691 85 RGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATA 164 (228)
T ss_pred HhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHH
Confidence 999998 689999999988887664 3599999999999985 4689999999999999976 89999999999999
Q ss_pred hhhhcCCCCCHHHHhhc
Q 030788 154 FDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 154 Le~~~~~~~s~~ea~~l 170 (171)
||++|+++||++||++|
T Consensus 165 Lek~y~~~ms~eeai~l 181 (228)
T TIGR03691 165 LKESYRDGLSLADALGL 181 (228)
T ss_pred HHHhcCCCCCHHHHHHH
Confidence 99999999999999986
No 20
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=7.2e-43 Score=261.44 Aligned_cols=155 Identities=33% Similarity=0.553 Sum_probs=149.9
Q ss_pred CceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 030788 15 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVA 94 (171)
Q Consensus 15 g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (171)
|+|+|||+++||||||+|++.+.+.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+..++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999998888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 95 ANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 95 a~~l~~~~~~~~-~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
++++++++|.++ |||++++|+||||+ +||+||.+||+|++.+++++|+|+++++++++||+.|+++||++||++|
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 156 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDE-EGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKL 156 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 999999999885 79999999999998 6899999999999999999999999999999999999999999999986
No 21
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.8e-43 Score=261.38 Aligned_cols=155 Identities=62% Similarity=1.085 Sum_probs=150.1
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 58999999999999999999998888788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 96 NLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 96 ~~l~~~~~~~~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+++++++|.+++||++++||||||++++|+||.+||.|++.+++++++|+++++++++||+.|+++||++||++|
T Consensus 81 ~~l~~~~~~~~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l 155 (188)
T cd03762 81 SLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKF 155 (188)
T ss_pred HHHHHHHHhccccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 999999999999999999999999767899999999999999999999999999999999999999999999986
No 22
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-42 Score=262.59 Aligned_cols=157 Identities=27% Similarity=0.403 Sum_probs=148.0
Q ss_pred cCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHH-HHHHHcCCCCCHH
Q 030788 14 MGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLH-QHTIQLGQPATVK 92 (171)
Q Consensus 14 ~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 92 (171)
.|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+++++|.+++ .+++.++++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 489999999999999999999997777778889999999999999999999999999999999986 5678899999999
Q ss_pred HHHHHHHHHHhcCC---CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCC--CCCHHHH
Q 030788 93 VAANLVRLLSYNNK---NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKE--GMTKEEA 167 (171)
Q Consensus 93 ~la~~l~~~~~~~~---~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~~ea 167 (171)
.++++++++++.++ |||++++|+||||++++|+||.+||+|++.+++++|+|+++.+++++||+.|++ +||++||
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea 160 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEA 160 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHH
Confidence 99999999987764 799999999999976799999999999999999999999999999999999999 9999999
Q ss_pred hhc
Q 030788 168 EVC 170 (171)
Q Consensus 168 ~~l 170 (171)
++|
T Consensus 161 ~~l 163 (197)
T cd03760 161 RAL 163 (197)
T ss_pred HHH
Confidence 886
No 23
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.7e-42 Score=258.52 Aligned_cols=154 Identities=32% Similarity=0.571 Sum_probs=149.3
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
+|+|||+++||||||+|+|.+++.++.+++.+|||+|+++++|+++|..+|++.+.+.++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 96 NLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 96 ~~l~~~~~~~~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+++++.+|.++.||+|++|+||||+ ++|+||.+||.|++.+++++|+|+++++++++||+.|+|+||++||++|
T Consensus 81 ~~l~~~l~~~~~p~~v~~ivaG~d~-~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l 154 (189)
T cd03763 81 TMLKQHLFRYQGHIGAALVLGGVDY-TGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKL 154 (189)
T ss_pred HHHHHHHHHcCCccceeEEEEeEcC-CCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 9999999999899999999999997 6899999999999999999999999999999999999999999999986
No 24
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-41 Score=254.98 Aligned_cols=154 Identities=33% Similarity=0.551 Sum_probs=148.9
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
+|+|||+++||||||+|+|.+++.++.+++.+||++|+++++++++|..+|++.+.+.++.+++.|+..++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 96 NLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 96 ~~l~~~~~~~~-~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+.+++.+|.++ |||++++|+||||+ ++|+||.+||+|++.+++++|+|+++++++++||+.|+++||++||+++
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l 155 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKL 155 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 99999999875 79999999999998 7899999999999999999999999999999999999999999999986
No 25
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.1e-41 Score=261.28 Aligned_cols=157 Identities=24% Similarity=0.355 Sum_probs=148.2
Q ss_pred cCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 030788 14 MGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKV 93 (171)
Q Consensus 14 ~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (171)
+|+|+|||+++||||||+|++.+++.++.+++.+||++|++|++|+++|+.+|++.+.+++|.+++.|++.++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 48999999999999999999999987877888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC----CCCceeeEEEEEEeCC-CCcEEEEECCCCc-eeeeCeEEeccchHHHHHHhhhhcCCCCCHHHH
Q 030788 94 AANLVRLLSYNN----KNFLQTGMIVGGWDKY-EGGKIYGVPLGGT-IIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEA 167 (171)
Q Consensus 94 la~~l~~~~~~~----~~p~~v~~liaG~d~~-~~~~Ly~vd~~G~-~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 167 (171)
+++.+++++|.+ .|||++++||||||++ ++|+||.+||+|+ +..++++|+|+|+++++++||+.|+++||++||
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eea 160 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDA 160 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHH
Confidence 999999998765 5899999999999964 5899999999995 667899999999999999999999999999999
Q ss_pred hhc
Q 030788 168 EVC 170 (171)
Q Consensus 168 ~~l 170 (171)
++|
T Consensus 161 i~l 163 (219)
T TIGR03690 161 LRV 163 (219)
T ss_pred HHH
Confidence 986
No 26
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.5e-41 Score=264.15 Aligned_cols=162 Identities=27% Similarity=0.451 Sum_probs=151.9
Q ss_pred CCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 030788 8 FNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQ 87 (171)
Q Consensus 8 a~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (171)
++-.+.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|+.+|++.+.+++|.+++.|++++++
T Consensus 32 ~~~~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~ 111 (247)
T PTZ00488 32 KAIEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGE 111 (247)
T ss_pred cccccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34457889999999999999999999999888888889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCC-CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHH
Q 030788 88 PATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEE 166 (171)
Q Consensus 88 ~~~~~~la~~l~~~~~~~~-~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 166 (171)
+++++.+|+++++++|.+| .|+.+++|+||||+ +||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++|
T Consensus 112 ~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eE 190 (247)
T PTZ00488 112 LISVAAASKILANIVWNYKGMGLSMGTMICGWDK-KGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEE 190 (247)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeC-CCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHH
Confidence 9999999999999999884 34556689999997 689999999999999999999999999999999999999999999
Q ss_pred Hhhc
Q 030788 167 AEVC 170 (171)
Q Consensus 167 a~~l 170 (171)
|++|
T Consensus 191 ai~l 194 (247)
T PTZ00488 191 AQDL 194 (247)
T ss_pred HHHH
Confidence 9986
No 27
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.4e-41 Score=253.84 Aligned_cols=155 Identities=42% Similarity=0.603 Sum_probs=149.9
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
+|+|||+++||||||+|++.+++..+..++.+|||+|+++++++++|+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999999887788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC-CceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 96 NLVRLLSYNNKN-FLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 96 ~~l~~~~~~~~~-p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+++++++|.+++ ||++++|+||||++++|+||.+||+|++.+++++|+|+++++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~ 156 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVEL 156 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHH
Confidence 999999999975 999999999999867999999999999999999999999999999999999999999999986
No 28
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-42 Score=253.45 Aligned_cols=165 Identities=19% Similarity=0.216 Sum_probs=158.5
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
.|.|||+||+.+++|+|||||||||||++|+.++++++. +...+||+.|++||+|+++|+.+|.+.+..++|.++.+|+
T Consensus 22 fQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~-p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~ 100 (254)
T KOG0184|consen 22 FQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYE-PGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWR 100 (254)
T ss_pred ehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccc-cCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999886 4567999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCC-----CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~~-----~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
..|+.|+|...+++.+..+.|.++ ||||++.++++||. +||+||.+||+|..+.++++|+|.+.+.|...|||.
T Consensus 101 ~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL 179 (254)
T KOG0184|consen 101 KNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKL 179 (254)
T ss_pred HhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccceeeeeccchhHHHHHHHHhc
Confidence 999999999999999999999885 89999999999997 899999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhh
Q 030788 158 WKEGMTKEEAEV 169 (171)
Q Consensus 158 ~~~~~s~~ea~~ 169 (171)
--.+|+.+|+++
T Consensus 180 ~~~~mt~~e~Vk 191 (254)
T KOG0184|consen 180 KIDEMTCKELVK 191 (254)
T ss_pred ccccccHHHHHH
Confidence 888999999986
No 29
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=1.6e-40 Score=247.58 Aligned_cols=155 Identities=34% Similarity=0.491 Sum_probs=149.7
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
+|+|||+++||||||+|++.+.+..+.+++.+|||+|+++++++++|..+|++.+.++++.++..|+..++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999999887678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC---CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 96 NLVRLLSYNNK---NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 96 ~~l~~~~~~~~---~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+.+++++|.++ +||++++|+||||++++|+||.+||+|++.+++++|+|+++++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 158 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIEL 158 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHH
Confidence 99999999987 7999999999999767999999999999999999999999999999999999999999999986
No 30
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=2.1e-40 Score=248.47 Aligned_cols=159 Identities=30% Similarity=0.421 Sum_probs=145.5
Q ss_pred CccCceEEEEEeCCeEEEeEeCCcccCceeeecC-CCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 030788 12 HSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRA-SDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPAT 90 (171)
Q Consensus 12 ~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (171)
+++|+|+|||+++||||||+|++.+.+..+..++ .+||++|++|++++++|..+|++.++++++.++..|++.++++++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 4689999999999999999999999887775665 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-----CCCCceeeEEEEEEeCCCCcEEEEECCCCceeee-CeEEeccchHHHHHHhhhhcCCCCCH
Q 030788 91 VKVAANLVRLLSYN-----NKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQ-PFAIGGSGSSYLYGFFDQAWKEGMTK 164 (171)
Q Consensus 91 ~~~la~~l~~~~~~-----~~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~ 164 (171)
++.+++.++..++. +++|+++++|+||||++++|+||.+||+|++.++ +++|+|+|+++++++||+.|+++||+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~ 160 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSL 160 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSH
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCH
Confidence 99666666655443 3689999999999998667999999999999999 79999999999999999999999999
Q ss_pred HHHhhc
Q 030788 165 EEAEVC 170 (171)
Q Consensus 165 ~ea~~l 170 (171)
+||+++
T Consensus 161 ~ea~~~ 166 (190)
T PF00227_consen 161 EEAIEL 166 (190)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999976
No 31
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.3e-40 Score=254.46 Aligned_cols=153 Identities=24% Similarity=0.278 Sum_probs=140.9
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEec----CcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCC-CCC
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLT----DNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQ-PAT 90 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~ 90 (171)
|.+|||+++||||||+|+|.+.+++..+ +.+||++|+ +||+|+.||+.+|++.+++++|.+++.|++++++ +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~-~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNIS-TYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCcccc-ccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 4689999999999999999998877654 689999998 8999999999999999999999999999999999 799
Q ss_pred HHHHHHHHHHHHhcC-----------CCCceeeEEEEEEeCCCCcEEEEECCCCceeee----CeEEeccchHHHHHHhh
Q 030788 91 VKVAANLVRLLSYNN-----------KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQ----PFAIGGSGSSYLYGFFD 155 (171)
Q Consensus 91 ~~~la~~l~~~~~~~-----------~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~----~~~a~G~g~~~~~~~Le 155 (171)
++.+|+.++++++.. .|||+|++||||||++.||+||.+||+|++.++ +|+|+|. +.+++++||
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 999999999976541 379999999999996578999999999999998 5689996 699999999
Q ss_pred hhcCCCCCHHHHhhc
Q 030788 156 QAWKEGMTKEEAEVC 170 (171)
Q Consensus 156 ~~~~~~~s~~ea~~l 170 (171)
+.|+++||++||++|
T Consensus 159 k~yk~~ms~eeai~l 173 (236)
T cd03765 159 RVITPDTSLEDAAKC 173 (236)
T ss_pred HhcCCCCCHHHHHHH
Confidence 999999999999986
No 32
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-42 Score=252.71 Aligned_cols=167 Identities=23% Similarity=0.332 Sum_probs=158.1
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
+|-|||++|+.+|+|+||++++|+|||..+++....++. .....||..+++|++++++|+.+|++.+++++|.+|++|+
T Consensus 18 ~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~-~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShr 96 (249)
T KOG0183|consen 18 FQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQD-ERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHR 96 (249)
T ss_pred EeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhh-hhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhh
Confidence 577999999999999999999999999999999998885 4558999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
++.+.|++++.++++|+.+.|.| +||||++.||+|+|+++.|+||++||+|.+++|++.|+|.+++.+..+|||.
T Consensus 97 lt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~ 176 (249)
T KOG0183|consen 97 LTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKN 176 (249)
T ss_pred cccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHh
Confidence 99999999999999999999998 4899999999999998889999999999999999999999999999999999
Q ss_pred cCCC--CCHHHHhhc
Q 030788 158 WKEG--MTKEEAEVC 170 (171)
Q Consensus 158 ~~~~--~s~~ea~~l 170 (171)
|.++ .|..++++|
T Consensus 177 y~e~~~~~~~~~ikL 191 (249)
T KOG0183|consen 177 YKEEAIATEGETIKL 191 (249)
T ss_pred cccccccccccHHHH
Confidence 9976 677777775
No 33
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-41 Score=248.73 Aligned_cols=167 Identities=20% Similarity=0.289 Sum_probs=159.7
Q ss_pred cccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (171)
Q Consensus 4 ~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (171)
|-|||++++.+.+|+|||.++||||||++++.+++++..+...+||++|+|+|+|+++|+++|+..+++.+|..++.|.+
T Consensus 20 QVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~ 99 (249)
T KOG0178|consen 20 QVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLF 99 (249)
T ss_pred HHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhc
Q 030788 84 QLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (171)
Q Consensus 84 ~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 158 (171)
++++++|++.|+..++...|.| +||||||+|.+|||+..|.+||+.||+|++..|++.++|.++..++++|+..|
T Consensus 100 ~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdy 179 (249)
T KOG0178|consen 100 RYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDY 179 (249)
T ss_pred HhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhh
Confidence 9999999999999999999988 49999999999999988999999999999999999999999999999999999
Q ss_pred CCCC-CHHHHhhc
Q 030788 159 KEGM-TKEEAEVC 170 (171)
Q Consensus 159 ~~~~-s~~ea~~l 170 (171)
+.+. +++||+.|
T Consensus 180 kdd~~~~~eA~~l 192 (249)
T KOG0178|consen 180 KDDENDLEEAKAL 192 (249)
T ss_pred ccccccHHHHHHH
Confidence 9765 59998765
No 34
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-40 Score=239.74 Aligned_cols=164 Identities=18% Similarity=0.268 Sum_probs=157.3
Q ss_pred cccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (171)
Q Consensus 4 ~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (171)
|.|||..|+.+|.+.|||+-.||||||++++..+.+.+ ..+.+|++.|.+||+|.+||..+|.+.+++..|..++.|..
T Consensus 21 QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~-~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~ 99 (233)
T KOG0181|consen 21 QIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVD-EESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYR 99 (233)
T ss_pred hHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccch-hhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHH
Confidence 78999999999999999999999999999998887765 56789999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCC-----CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhc
Q 030788 84 QLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (171)
Q Consensus 84 ~~~~~~~~~~la~~l~~~~~~~~-----~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 158 (171)
.|++++++..|...++..+|+|+ ||||++++|||||+ ++|.||++||+|+++.|+++|+|.+.-.+..+||+.|
T Consensus 100 vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~ 178 (233)
T KOG0181|consen 100 VYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRY 178 (233)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECCccceeehhhhhhccCcchHHHHHHHHh
Confidence 99999999999999999999995 89999999999999 7999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhh
Q 030788 159 KEGMTKEEAEV 169 (171)
Q Consensus 159 ~~~~s~~ea~~ 169 (171)
++++.+++++.
T Consensus 179 ~edleldd~ih 189 (233)
T KOG0181|consen 179 NEDLELDDAIH 189 (233)
T ss_pred ccccccchHHH
Confidence 99999998874
No 35
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-37 Score=223.06 Aligned_cols=156 Identities=26% Similarity=0.416 Sum_probs=151.3
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
.+++||++.|+|++|+|+....+.++.+++.+|++.|++++.|+++|..+|+-++.+++.+.++.|+.++|.+++|..+|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC---CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhcC
Q 030788 96 NLVRLLSYNN---KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVCW 171 (171)
Q Consensus 96 ~~l~~~~~~~---~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~ 171 (171)
+++++.+.++ ++||.|++|+||+|++.||.||++|..|+..+.++++.|.++.++.++|+++|+|+||.+||+.||
T Consensus 82 hFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lm 160 (200)
T KOG0177|consen 82 HFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLM 160 (200)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHH
Confidence 9999999886 579999999999999889999999999999999999999999999999999999999999999875
No 36
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-35 Score=222.52 Aligned_cols=167 Identities=31% Similarity=0.529 Sum_probs=161.4
Q ss_pred cccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (171)
Q Consensus 4 ~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (171)
|.+-+.++.+.|+|++|+.++||||+++|+|.+.|.++...+.+||+.|.++|+||.+|-++|...+.+.+..+.+.|++
T Consensus 26 ~g~k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l 105 (271)
T KOG0173|consen 26 KGLKAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRL 105 (271)
T ss_pred cCCCCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHh
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCC
Q 030788 84 QLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMT 163 (171)
Q Consensus 84 ~~~~~~~~~~la~~l~~~~~~~~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s 163 (171)
+.++.+.+-...+.+.+.++.|+...++.++++|+|. .||+||.+.|.|+...-+|.++|||+..+.++||..|+|||+
T Consensus 106 ~t~R~~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~-TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt 184 (271)
T KOG0173|consen 106 NTGRKPRVVTALRMLKQHLFRYQGHIGAALILGGVDP-TGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLT 184 (271)
T ss_pred ccCCCCceeeHHHHHHHHHHHhcCcccceeEEccccC-CCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccC
Confidence 9999999999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 030788 164 KEEAEVCW 171 (171)
Q Consensus 164 ~~ea~~l~ 171 (171)
+|||++|.
T Consensus 185 ~eea~~Lv 192 (271)
T KOG0173|consen 185 KEEAIKLV 192 (271)
T ss_pred HHHHHHHH
Confidence 99999873
No 37
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-36 Score=222.21 Aligned_cols=162 Identities=21% Similarity=0.275 Sum_probs=151.6
Q ss_pred cccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (171)
Q Consensus 4 ~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (171)
|-|||++|+++|+++||+|.++..||++-+|..+.+ ++.++|||+||+|++++++|+++|++.+.++++.+|.+++.
T Consensus 21 QvEya~EavkqGsatVGLks~thaVLvAl~r~~seL---ss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~ 97 (264)
T KOG0863|consen 21 QVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSEL---SSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRF 97 (264)
T ss_pred HHHHHHHHHhcccceEeecccceEEEeeeccchhHH---HHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhh
Confidence 569999999999999999999999999988887753 56789999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhc
Q 030788 84 QLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (171)
Q Consensus 84 ~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 158 (171)
.+++++++..+...+.+..|.. ||||||.++++|||+ .||+||.++|+|++.++++.+||+.++.+..+||+..
T Consensus 98 ~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe-~G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~ 176 (264)
T KOG0863|consen 98 IYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDE-SGPHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNL 176 (264)
T ss_pred ccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecC-CCceeEEEcCCccEEEEeeeecccchhhHHHHHHHHH
Confidence 9999999999998888887764 699999999999999 7999999999999999999999999999999999988
Q ss_pred C--CCCCHHHHhh
Q 030788 159 K--EGMTKEEAEV 169 (171)
Q Consensus 159 ~--~~~s~~ea~~ 169 (171)
. ++++.+|.++
T Consensus 177 e~f~~~~~eELI~ 189 (264)
T KOG0863|consen 177 EEFEDSSPEELIK 189 (264)
T ss_pred HHHhcCCHHHHHH
Confidence 6 5899999875
No 38
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-35 Score=219.76 Aligned_cols=158 Identities=30% Similarity=0.506 Sum_probs=153.5
Q ss_pred CccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q 030788 12 HSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATV 91 (171)
Q Consensus 12 ~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (171)
..+|||++|++++.|||+|+|+|.+.|..|.++.++||.+|+++.+-+.+|-++|++.+-+.+..+|..|++++++.|+|
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC-ceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 92 KVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 92 ~~la~~l~~~~~~~~~p-~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
...++.|+++++.|+.. +.+..+|||||+ .||.||+||..|+-...+-+++|+|+.+|+++|++.|++|||.+||..|
T Consensus 148 saASKllsN~~y~YkGmGLsmGtMi~G~Dk-~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L 226 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKGMGLSMGTMIAGWDK-KGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDL 226 (285)
T ss_pred HHHHHHHHHHHhhccCcchhheeeEeeccC-CCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHHHH
Confidence 99999999999999865 889999999999 7999999999999999999999999999999999999999999999876
No 39
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-34 Score=210.23 Aligned_cols=164 Identities=56% Similarity=0.959 Sum_probs=157.1
Q ss_pred CCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcC
Q 030788 7 DFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLG 86 (171)
Q Consensus 7 ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 86 (171)
+....+..|+|++|+++++||||++|+|.+.|..+.+...+|+-+|.|+|+||-||.++|.+.+.+.++-.+..|...++
T Consensus 11 ~~~~evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~ 90 (224)
T KOG0174|consen 11 LPKEEVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQEN 90 (224)
T ss_pred CcccccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcC
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHH
Q 030788 87 QPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEE 166 (171)
Q Consensus 87 ~~~~~~~la~~l~~~~~~~~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 166 (171)
+++++...|+.++++.|+++..+.+.+|+||||+..|.++|.+...|+..+.++..-|+|+.+++++++..|+|+||+||
T Consensus 91 ~~p~v~~aA~l~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE 170 (224)
T KOG0174|consen 91 KPPLVHTAASLFREICYNYREMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEE 170 (224)
T ss_pred CCchHHHHHHHHHHHHHhCHHhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHH
Confidence 99999999999999999999889999999999998899999998888999999999999999999999999999999999
Q ss_pred Hhhc
Q 030788 167 AEVC 170 (171)
Q Consensus 167 a~~l 170 (171)
++++
T Consensus 171 ~~~f 174 (224)
T KOG0174|consen 171 CVRF 174 (224)
T ss_pred HHHH
Confidence 9876
No 40
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-34 Score=210.14 Aligned_cols=167 Identities=16% Similarity=0.151 Sum_probs=157.2
Q ss_pred ccccCCCCCCcc-CceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSM-GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQH 81 (171)
Q Consensus 3 ~~~~ya~~a~~~-g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 81 (171)
.|.|||.||+++ |-|+||++++|++|+++.++.+.+++. .+....+|+|..+|+|+++|..+|++..++++|.++.++
T Consensus 23 yQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld-~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~ 101 (246)
T KOG0182|consen 23 YQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLD-SSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEF 101 (246)
T ss_pred EeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccc-cccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhh
Confidence 478999999999 779999999999999999999999875 456799999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCC-----CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhh
Q 030788 82 TIQLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQ 156 (171)
Q Consensus 82 ~~~~~~~~~~~~la~~l~~~~~~~~-----~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~ 156 (171)
++.||.+||++.||+.++++.|-++ ||+||.+++.|+|++.||.+|.+||.|.+..++++|.|.....+..+||+
T Consensus 102 ~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEK 181 (246)
T KOG0182|consen 102 RYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEK 181 (246)
T ss_pred hhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHHHH
Confidence 9999999999999999999988773 89999999999999899999999999999999999999999999999999
Q ss_pred hcCCC--CCHHHHhhc
Q 030788 157 AWKEG--MTKEEAEVC 170 (171)
Q Consensus 157 ~~~~~--~s~~ea~~l 170 (171)
+|+++ .|.+|++++
T Consensus 182 k~Kk~~~~t~~e~ve~ 197 (246)
T KOG0182|consen 182 KYKKDIDLTFEETVET 197 (246)
T ss_pred hhccCccchHHHHHHH
Confidence 99987 678888864
No 41
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=100.00 E-value=2.1e-31 Score=193.31 Aligned_cols=154 Identities=31% Similarity=0.385 Sum_probs=147.9
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
+|+||++++||||+|+|++.+.+........+|++.++++++++++|..+|++.+.++++++++.|++.+++++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999999887567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC--CCceeeEEEEEEeCCCCcEEEEECCCCceeee-CeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 96 NLVRLLSYNNK--NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQ-PFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 96 ~~l~~~~~~~~--~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+.+++.++.++ +|+++++++||+|+ ++|+||.+||.|++.+. .++++|.++..+.++|++.|+++|+++|++++
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVEL 157 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999886 89999999999998 79999999999999999 99999999999999999999999999999876
No 42
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=9.5e-32 Score=198.36 Aligned_cols=143 Identities=26% Similarity=0.303 Sum_probs=125.6
Q ss_pred CceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEe-cCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 030788 15 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQL-TDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKV 93 (171)
Q Consensus 15 g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (171)
|+|+|||+++||||||+|+|.+.+.++.+.+.+||++| +++++|+.||..+|++.+.+.++.+++.|+. + . ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~--~-~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--N--L-LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--c--c-HHH
Confidence 68999999999999999999999999999999999999 9999999999999999999999999999882 2 2 466
Q ss_pred HHHHHHHHH-hcCCCCceeeEEEEEEeCCCCcEEEEECCCCceeee--CeEEeccchHHHHHHhhhhcC-CCCCHHHHhh
Q 030788 94 AANLVRLLS-YNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQ--PFAIGGSGSSYLYGFFDQAWK-EGMTKEEAEV 169 (171)
Q Consensus 94 la~~l~~~~-~~~~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~-~~~s~~ea~~ 169 (171)
+++.++.+. +.+++|+.+++|++ |+ |+||.+||.|++.+. +++|+|+|+.+++++||+.|+ |+| ||++
T Consensus 76 ~a~l~~~l~~~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~~ 147 (172)
T PRK05456 76 AVELAKDWRTDRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SAEE 147 (172)
T ss_pred HHHHHHHHHhccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHHH
Confidence 676665543 44567888999994 44 799999999999766 899999999999999999999 999 6655
Q ss_pred c
Q 030788 170 C 170 (171)
Q Consensus 170 l 170 (171)
|
T Consensus 148 l 148 (172)
T PRK05456 148 I 148 (172)
T ss_pred H
Confidence 4
No 43
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-31 Score=197.33 Aligned_cols=167 Identities=23% Similarity=0.288 Sum_probs=156.5
Q ss_pred ccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 030788 5 MEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQ 84 (171)
Q Consensus 5 ~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 84 (171)
.+.+.+...+|+|+|||.+.|+.|+|+|+|.+.+..+.+.+.+|||+++|+++++.+|..+|+..|...++...+.|+..
T Consensus 19 ~~~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~ 98 (235)
T KOG0179|consen 19 HERFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHD 98 (235)
T ss_pred cccCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhc
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCC-CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcC----
Q 030788 85 LGQPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWK---- 159 (171)
Q Consensus 85 ~~~~~~~~~la~~l~~~~~~~~-~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~---- 159 (171)
+++.|++..+|+.|+..+|..| +||.+..++||+|+++++.+|..||-|++....+.|.|+++..++++|+....
T Consensus 99 h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~ 178 (235)
T KOG0179|consen 99 HNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQ 178 (235)
T ss_pred ccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCc
Confidence 9999999999999999999988 69999999999999999999999999999999999999999999999996642
Q ss_pred -------CCCCHHHHhhcC
Q 030788 160 -------EGMTKEEAEVCW 171 (171)
Q Consensus 160 -------~~~s~~ea~~l~ 171 (171)
+.+|+++|+.|+
T Consensus 179 ~~e~~~~~~Ls~e~ai~lv 197 (235)
T KOG0179|consen 179 NLENAERTPLSLERAIRLV 197 (235)
T ss_pred ccccCcccccCHHHHHHHH
Confidence 357899998873
No 44
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.97 E-value=1.2e-30 Score=191.50 Aligned_cols=141 Identities=26% Similarity=0.268 Sum_probs=121.4
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecC-cEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTD-NVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVA 94 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (171)
+|+|||+++||||||+|+|.+.+.++.+.+.+||++|++ |++|+.+|..+|++.+.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 689999999999999999999999999999999999998 999999999999999999999999999988774 44
Q ss_pred HHHHHHHH-hcCCCCceeeEEEEEEeCCCCcEEEEECCCCceeee--CeEEeccchHHHHHHhhhhcCCC-CCHHH
Q 030788 95 ANLVRLLS-YNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQ--PFAIGGSGSSYLYGFFDQAWKEG-MTKEE 166 (171)
Q Consensus 95 a~~l~~~~-~~~~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~-~s~~e 166 (171)
++.+..++ +++++.+.+.++++++ ++||.+||.|++.+. ++.++|||+.+++++||..|+++ ||.+|
T Consensus 76 a~l~~~l~~~~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms~~~ 146 (171)
T cd01913 76 VELAKDWRTDRYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLSAEE 146 (171)
T ss_pred HHHHHHHHhccCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCCHHH
Confidence 55555543 3343335466666533 499999999999998 49999999999999999999995 99664
No 45
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-30 Score=186.04 Aligned_cols=157 Identities=22% Similarity=0.315 Sum_probs=150.3
Q ss_pred ccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Q 030788 13 SMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVK 92 (171)
Q Consensus 13 ~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (171)
-+|+++||+++||||.+|+|.|.....+....+.+|||+|.|+++++.+|+..|++.+.++++..-..|+++.++.|.|+
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 47999999999999999999999988887888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC-CCceeeEEEEEEeCCCCcEEEEECCCCceee-eCeEEeccchHHHHHHhhhhcCCCCCHHHHhh
Q 030788 93 VAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIE-QPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEV 169 (171)
Q Consensus 93 ~la~~l~~~~~~~~-~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~ 169 (171)
.++..+|.++|++| .||.+..++||+|+++.|+|+..|.-|.... ..|+++|.+++..+++.|..|+|+|..+|..+
T Consensus 86 ~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFe 164 (204)
T KOG0180|consen 86 TFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFE 164 (204)
T ss_pred HHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999998 6899999999999999999999999998765 79999999999999999999999999999875
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=1.1e-29 Score=186.32 Aligned_cols=140 Identities=25% Similarity=0.274 Sum_probs=120.6
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEe-cCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQL-TDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVA 94 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (171)
+|+|||+++||||||+|+|.+.+.++.+.+.+||++| ++|++|+.+|..+|++.+.++++.+++.|+... .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6899999999999999999999999999999999999 599999999999999999999999999987743 3667
Q ss_pred HHHHHHH-HhcCCCCceeeEEEEEEeCCCCcEEEEECCCCceeee--CeEEeccchHHHHHHhhhhc-CCCCCHH
Q 030788 95 ANLVRLL-SYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQ--PFAIGGSGSSYLYGFFDQAW-KEGMTKE 165 (171)
Q Consensus 95 a~~l~~~-~~~~~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~--~~~a~G~g~~~~~~~Le~~~-~~~~s~~ 165 (171)
++.++++ .+.+++.+.+.+++++| ++||.+||.|.+.+. ++.++|||+.+++++||..| +++|+..
T Consensus 76 a~l~~~~~~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~sa~ 145 (171)
T TIGR03692 76 VELAKDWRTDRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLSAE 145 (171)
T ss_pred HHHHHHHhhcccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCCHH
Confidence 7777774 23444445577666533 499999999999995 69999999999999999999 4888833
No 47
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-30 Score=192.59 Aligned_cols=163 Identities=26% Similarity=0.390 Sum_probs=150.6
Q ss_pred CCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH-HHcCC
Q 030788 9 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT-IQLGQ 87 (171)
Q Consensus 9 ~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~-~~~~~ 87 (171)
+.++-.||++||+|++||||+|+|+..++|.+....+.++|++|+|++++++||..+|++.+.+.+........ +..++
T Consensus 35 ~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~ 114 (256)
T KOG0185|consen 35 LNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQ 114 (256)
T ss_pred cCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhccccccccc
Confidence 34677899999999999999999999999999999999999999999999999999999999999988776643 56678
Q ss_pred CCCHHHHHHHHHHHHhcCC---CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcC---CC
Q 030788 88 PATVKVAANLVRLLSYNNK---NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWK---EG 161 (171)
Q Consensus 88 ~~~~~~la~~l~~~~~~~~---~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~---~~ 161 (171)
.+.|+.++.+|.+.+|.+| .|+...++|||+|.++.|+|-.+|..|..++.+..|+|.|...+.++|++.|. ++
T Consensus 115 ~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~ 194 (256)
T KOG0185|consen 115 SLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGED 194 (256)
T ss_pred ccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccchh
Confidence 9999999999999999886 79999999999999788999999999999999999999999999999999998 57
Q ss_pred CCHHHHhhcC
Q 030788 162 MTKEEAEVCW 171 (171)
Q Consensus 162 ~s~~ea~~l~ 171 (171)
++.+||..|+
T Consensus 195 ~s~eeA~~li 204 (256)
T KOG0185|consen 195 LSREEAEALI 204 (256)
T ss_pred hHHHHHHHHH
Confidence 9999998763
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8e-14 Score=99.51 Aligned_cols=147 Identities=24% Similarity=0.226 Sum_probs=114.5
Q ss_pred ccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecC-cEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q 030788 13 SMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTD-NVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATV 91 (171)
Q Consensus 13 ~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (171)
.++||+|+++.++-|++|.|.++|.|..+++.+..|+.+|.+ .++.+++|.++|+..|.+.+..+++.|.-..-+ ..
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~r--aa 79 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFR--AA 79 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcHHH--HH
Confidence 468999999999999999999999999999999999988865 899999999999999999999999887522111 22
Q ss_pred HHHHHHHHHHHhcCCCCceeeEEEEEEeCCCCcEEEEECCCCceee--eCeEEeccchHHHHHHhhhhcC-CCCCHHHHh
Q 030788 92 KVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIE--QPFAIGGSGSSYLYGFFDQAWK-EGMTKEEAE 168 (171)
Q Consensus 92 ~~la~~l~~~~~~~~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~--~~~~a~G~g~~~~~~~Le~~~~-~~~s~~ea~ 168 (171)
-.+++..+.-- +.|.+.+-++++ | .-.++.+...|.+.+ ....|||||..+|++...-.++ +++|.+|-.
T Consensus 80 velaKdwr~Dk--~lr~LEAmllVa--d---~~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~lsA~eIa 152 (178)
T COG5405 80 VELAKDWRTDK--YLRKLEAMLLVA--D---KTHILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELSAREIA 152 (178)
T ss_pred HHHHHhhhhhh--HHHHHhhheeEe--C---CCcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCCHHHHH
Confidence 22333333111 123466667776 3 356888888898775 5699999999999999888887 489888753
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.2e-10 Score=86.41 Aligned_cols=154 Identities=25% Similarity=0.317 Sum_probs=114.5
Q ss_pred CceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEec---Cc-EEEEecCCHHHHHHHHHHHHHHHHHHHHH-cCCCC
Q 030788 15 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLT---DN-VYLCRSGSAADSQTVSDYVRYFLHQHTIQ-LGQPA 89 (171)
Q Consensus 15 g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~---~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~~-~~~~~ 89 (171)
.+.|||++-..|.|+++|+|...|. ......+|+|.-. ++ ++++.+|..+-.+.+++.+.+..+.-+-. .-+-.
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAGv-D~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~ 79 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAGV-DYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIP 79 (255)
T ss_pred CceEEEEEeccceEEecccccccCc-hHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcch
Confidence 3679999999999999999988762 2334557776552 33 56788999999999999887665421111 11123
Q ss_pred CHHHHHHHHHHHHhc---CCC--------CceeeEEEEEEeCCCCcEEEEECCCCceee----eCeEEeccchHHHHHHh
Q 030788 90 TVKVAANLVRLLSYN---NKN--------FLQTGMIVGGWDKYEGGKIYGVPLGGTIIE----QPFAIGGSGSSYLYGFF 154 (171)
Q Consensus 90 ~~~~la~~l~~~~~~---~~~--------p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~----~~~~a~G~g~~~~~~~L 154 (171)
++...+..+.+...+ +.+ -|.|++|++|.=..+.|.||.+.|.|++.+ .+|.-+| -+.+.+++|
T Consensus 80 sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiG-EtKYGKPil 158 (255)
T COG3484 80 SMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIG-ETKYGKPIL 158 (255)
T ss_pred hHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEcc-ccccCchhh
Confidence 555555555544332 222 299999999988766799999999999876 6899999 556889999
Q ss_pred hhhcCCCCCHHHHhhc
Q 030788 155 DQAWKEGMTKEEAEVC 170 (171)
Q Consensus 155 e~~~~~~~s~~ea~~l 170 (171)
++.+..++.++|+.++
T Consensus 159 dR~i~~~~pLeea~kc 174 (255)
T COG3484 159 DRTITYDTPLEEAAKC 174 (255)
T ss_pred hhhhhccCCHHHHhhh
Confidence 9999999999999875
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=93.54 E-value=2.4 Score=31.83 Aligned_cols=123 Identities=17% Similarity=0.250 Sum_probs=71.6
Q ss_pred CceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 030788 15 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVA 94 (171)
Q Consensus 15 g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (171)
++.+||..+++|.|+|.|+|. +++-|.......|-+. +..|+=-+-+.|
T Consensus 1 MSLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEee---------LYsG~IktdeEL 49 (194)
T PF09894_consen 1 MSLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEEE---------LYSGKIKTDEEL 49 (194)
T ss_pred CeEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHHH---------HhCCccCCHHHH
Confidence 367899999999999999863 2466776666655543 334554455667
Q ss_pred HHHHHHHHhc-----CC---CCceeeEEEEE------EeCCCCcEEEEE-------CCCCceeee-------CeEEecc-
Q 030788 95 ANLVRLLSYN-----NK---NFLQTGMIVGG------WDKYEGGKIYGV-------PLGGTIIEQ-------PFAIGGS- 145 (171)
Q Consensus 95 a~~l~~~~~~-----~~---~p~~v~~liaG------~d~~~~~~Ly~v-------d~~G~~~~~-------~~~a~G~- 145 (171)
.+...++=-. .+ +-.+- +|+|- .|. ..-++|.+ |-.|.-... .....|.
T Consensus 50 ~kkA~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~s-kRRRiY~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfGNk 127 (194)
T PF09894_consen 50 LKKAEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDS-KRRRIYATKGKYAIVEIENDEITNKSRGEGSGIIVFGNK 127 (194)
T ss_pred HHHHHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccc-eeeEEEecCCCEEEEEecCCeEEEEecCCceeEEEECCH
Confidence 6666654211 11 11222 33333 333 24567754 333322111 1233342
Q ss_pred -chHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 146 -GSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 146 -g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
-.+.+...|.++|++.|+++++.++
T Consensus 128 ~~K~ia~~~lkk~~~~k~~l~~i~~i 153 (194)
T PF09894_consen 128 FTKEIANKELKKYWKPKMSLKDIENI 153 (194)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 2366777999999999999988765
No 51
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=92.70 E-value=0.21 Score=35.19 Aligned_cols=44 Identities=27% Similarity=0.323 Sum_probs=40.6
Q ss_pred EEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 127 YGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 127 y~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
..+|-+|.+...+|-..|.|+..|.+-+-..|-+++|++||.++
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 46888999999999999999999999999999999999999764
No 52
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=66.41 E-value=4.7 Score=32.22 Aligned_cols=54 Identities=24% Similarity=0.238 Sum_probs=37.8
Q ss_pred EEEEeCCCCcEEE-EECCCCceeeeCeEEeccc-hHHHHHHhhhhcCC-CCCHHHHhhcC
Q 030788 115 VGGWDKYEGGKIY-GVPLGGTIIEQPFAIGGSG-SSYLYGFFDQAWKE-GMTKEEAEVCW 171 (171)
Q Consensus 115 iaG~d~~~~~~Ly-~vd~~G~~~~~~~~a~G~g-~~~~~~~Le~~~~~-~~s~~ea~~l~ 171 (171)
+-|.|+..|-.+| ....+|.+... ..|.. -.....-|-+.|.+ ++|+|+|++||
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LL 133 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKPETITLEKALKLL 133 (298)
T ss_pred ccccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCChhhCcHHHHHHHH
Confidence 3478876665554 45568877643 45655 55556678888884 79999999986
No 53
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.21 E-value=83 Score=24.80 Aligned_cols=124 Identities=18% Similarity=0.261 Sum_probs=71.5
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
+.+|+-.++||.|+|.|+|. +++-|.-.|.+.+-+. +..|+-.|-+.|+
T Consensus 2 tLviay~gknGaviaGDrR~----------------------i~frgdee~re~lEek---------LYsGeIkteEEL~ 50 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE----------------------ITFRGDEEDREKLEEK---------LYSGEIKTEEELA 50 (293)
T ss_pred eEEEEEecCCCcEEeccceE----------------------EEEecChhHHHHHHHH---------hhcCccccHHHHH
Confidence 56899999999999999763 2355666676665543 3456655667777
Q ss_pred HHHHHHHhcC-----C---CCceeeEEEEEEeCCC-----CcEEEEE-------CCCCceee-------eCeEEecc--c
Q 030788 96 NLVRLLSYNN-----K---NFLQTGMIVGGWDKYE-----GGKIYGV-------PLGGTIIE-------QPFAIGGS--G 146 (171)
Q Consensus 96 ~~l~~~~~~~-----~---~p~~v~~liaG~d~~~-----~~~Ly~v-------d~~G~~~~-------~~~~a~G~--g 146 (171)
+...++--+. + +...-+++++-+..-. .-++|.+ +..|+-.. ..+.+.|. -
T Consensus 51 r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~ 130 (293)
T COG4079 51 RKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFT 130 (293)
T ss_pred HHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHHH
Confidence 7776653221 1 2222334444333211 2335532 22232110 22344442 2
Q ss_pred hHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 147 SSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 147 ~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
.+.+..+|.+.|.+.++++++..+
T Consensus 131 Ke~aneflk~~l~~k~~lqd~~da 154 (293)
T COG4079 131 KEVANEFLKDNLTKKSKLQDAVDA 154 (293)
T ss_pred HHHHHHHHHhhccCCCCHHHHHHH
Confidence 355677899999999999988765
No 54
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=57.75 E-value=17 Score=20.95 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=27.4
Q ss_pred EEECCCCceeeeCeEEeccchHHHHHHhhhhc
Q 030788 127 YGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (171)
Q Consensus 127 y~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 158 (171)
|.|+|+|.+...--...|+....+...|++..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999998777788999999998888765
No 55
>COG5469 Predicted metal-binding protein [Function unknown]
Probab=42.69 E-value=8 Score=27.45 Aligned_cols=71 Identities=14% Similarity=0.092 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCCCceeeEEEEEEeCCC-------CcEEEEECCCCc
Q 030788 64 AADSQTVSDYVRYFLHQHTIQLGQPA-TVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYE-------GGKIYGVPLGGT 134 (171)
Q Consensus 64 ~~D~~~l~~~~~~~~~~~~~~~~~~~-~~~~la~~l~~~~~~~~~p~~v~~liaG~d~~~-------~~~Ly~vd~~G~ 134 (171)
..|...+.+.+.+.++.....++-+| +++.++..=+...-.++.|-.-+-|++.+++++ ..+||.-..+|.
T Consensus 38 p~~G~~Ll~kl~~l~qe~~~~~e~~I~~VeCl~~C~r~c~vA~~~~~k~sYLFgdL~p~d~a~dLl~~a~ly~~~~dG~ 116 (143)
T COG5469 38 PSDGSILLDKLQELAQEWEIAHEFEIQTVECLAACNRGCVVAFSGPGKPSYLFGDLTPDDSASDLLEFAQLYANSADGL 116 (143)
T ss_pred CCcHHHHHHHHHHHHhhhhhhccceeeeeHhhhhcCCCeEEEEecCCCceEEEccCCccccHHHHHHHHHHhhhcccCc
Confidence 46888999999999988888876665 556555443322233344444555666665543 234555555554
No 56
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=35.01 E-value=57 Score=23.48 Aligned_cols=44 Identities=25% Similarity=0.205 Sum_probs=36.4
Q ss_pred EE-EECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 126 IY-GVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 126 Ly-~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
|| .+| .|.+....|-..|.+...+.+-+=..+-++.|.+||.++
T Consensus 45 l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i 89 (150)
T COG0822 45 LYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKI 89 (150)
T ss_pred EEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 44 355 888888999999988888888777778889999999875
No 57
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=32.99 E-value=1.5e+02 Score=19.85 Aligned_cols=75 Identities=17% Similarity=0.084 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceeeEEEEEEeCCCCcEEEE--ECCCCceee-eCeEEeccchHHHHHHhhhhcCCCCCH
Q 030788 88 PATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYG--VPLGGTIIE-QPFAIGGSGSSYLYGFFDQAWKEGMTK 164 (171)
Q Consensus 88 ~~~~~~la~~l~~~~~~~~~p~~v~~liaG~d~~~~~~Ly~--vd~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s~ 164 (171)
......+|..+.+.+-..+=|..+--|-.|+.+ +|.+|+ ..|..+... ..+-+++-+ .-+.|.....+|+.
T Consensus 18 ~~qC~~cA~Al~~~L~~~gI~Gk~i~l~T~~~~--~~~I~sd~~~~~~sIt~NG~H~gI~V~----~~VFDNl~p~G~~r 91 (100)
T PF15643_consen 18 IFQCVECASALKQFLKQAGIPGKIIRLYTGYHE--GPFIYSDRLGPQESITTNGRHYGIEVG----EIVFDNLHPEGMSR 91 (100)
T ss_pred ceehHHHHHHHHHHHHHCCCCceEEEEEecCCC--CceehhhhhcCCcceeeCCEEEEEEEe----eEEecccCcccCCH
Confidence 457788999999888877666655556666654 688775 334556554 233333333 34666777778888
Q ss_pred HHHh
Q 030788 165 EEAE 168 (171)
Q Consensus 165 ~ea~ 168 (171)
++=+
T Consensus 92 ~dWl 95 (100)
T PF15643_consen 92 EDWL 95 (100)
T ss_pred HHHH
Confidence 7754
No 58
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=31.74 E-value=94 Score=18.99 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 030788 72 DYVRYFLHQHTIQLGQPATVKVAANLVR 99 (171)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~la~~l~ 99 (171)
+.+++.........|+.++.+.+|..+.
T Consensus 4 ~~i~~a~~~L~~~lgr~Pt~eEiA~~lg 31 (78)
T PF04539_consen 4 RKIERARRELEQELGREPTDEEIAEELG 31 (78)
T ss_dssp HHHHHHHHHHHHHHSS--BHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHc
Confidence 3445555666777899999999988764
No 59
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=31.72 E-value=54 Score=21.28 Aligned_cols=24 Identities=8% Similarity=-0.026 Sum_probs=20.5
Q ss_pred hHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 147 SSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 147 ~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
-..+..+|++.-.|++|+++.++|
T Consensus 31 lerakeiLe~LndpeisL~eSvkL 54 (86)
T PRK14065 31 VHSLEQAIDRLNDPNLSLKDGMDL 54 (86)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHH
Confidence 456778999999999999999876
No 60
>PRK11325 scaffold protein; Provisional
Probab=30.77 E-value=1e+02 Score=21.30 Aligned_cols=43 Identities=28% Similarity=0.323 Sum_probs=32.5
Q ss_pred EECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 128 GVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 128 ~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
.+|+.|.+.+..|.+.|.....+-.-+=..+-.+.|++||..+
T Consensus 46 ~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i 88 (127)
T PRK11325 46 KVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAI 88 (127)
T ss_pred EECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhc
Confidence 4656788888999999977777766555556668899998765
No 61
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=29.22 E-value=75 Score=17.81 Aligned_cols=28 Identities=21% Similarity=0.060 Sum_probs=20.9
Q ss_pred EeccchHHHHHHhhhhc-CCCCCHHHHhh
Q 030788 142 IGGSGSSYLYGFFDQAW-KEGMTKEEAEV 169 (171)
Q Consensus 142 a~G~g~~~~~~~Le~~~-~~~~s~~ea~~ 169 (171)
+.|.....+..++.+.. .++++.+|.++
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik 40 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIK 40 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHH
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHH
Confidence 35778888888888877 88999998775
No 62
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.11 E-value=39 Score=25.34 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCC----------cee-eEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhh
Q 030788 88 PATVKVAANLVRLLSYNNKNF----------LQT-GMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQ 156 (171)
Q Consensus 88 ~~~~~~la~~l~~~~~~~~~p----------~~v-~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~ 156 (171)
.++-..+++.-..+... +| +.+ +++|-|+|+ +.+|..||.|.- ....-...|++
T Consensus 117 d~tGksl~~ik~ql~kg--~PV~iw~T~~~~~s~H~v~itgyDk---~n~yynDpyG~k----------n~~~~~~~~e~ 181 (195)
T COG4990 117 DLTGKSLSDIKGQLLKG--RPVVIWVTNFHSYSIHSVLITGYDK---YNIYYNDPYGYK----------NRKISHTYLED 181 (195)
T ss_pred cCcCCcHHHHHHHHhcC--CcEEEEEecccccceeeeEeecccc---cceEeccccccc----------hhhhhHHHHHH
Confidence 45556666655555443 34 111 456779987 889999999643 33344567777
Q ss_pred hcCC
Q 030788 157 AWKE 160 (171)
Q Consensus 157 ~~~~ 160 (171)
.|+.
T Consensus 182 g~n~ 185 (195)
T COG4990 182 GWNA 185 (195)
T ss_pred HHhh
Confidence 7763
No 63
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=28.36 E-value=57 Score=17.28 Aligned_cols=19 Identities=11% Similarity=0.114 Sum_probs=8.7
Q ss_pred EEEECCCCceeeeCeEEec
Q 030788 126 IYGVPLGGTIIEQPFAIGG 144 (171)
Q Consensus 126 Ly~vd~~G~~~~~~~~a~G 144 (171)
+=.+||.|....+.+-+.|
T Consensus 8 ~~~~d~~G~~~~y~YD~~g 26 (38)
T PF05593_consen 8 TSVTDPDGRTTRYTYDAAG 26 (38)
T ss_pred EEEEcCCCCEEEEEECCCC
Confidence 3444555555444443333
No 64
>KOG2449 consensus Methylmalonate semialdehyde dehydrogenase [Amino acid transport and metabolism; Carbohydrate transport and metabolism]
Probab=28.00 E-value=2.3e+02 Score=20.39 Aligned_cols=73 Identities=8% Similarity=0.032 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCCCceeeEEEEEEeCCC--CcEEEEECCCCcee
Q 030788 64 AADSQTVSDYVRYFLHQHTIQLGQPATVK--VAANLVRLLSYNNKNFLQTGMIVGGWDKYE--GGKIYGVPLGGTII 136 (171)
Q Consensus 64 ~~D~~~l~~~~~~~~~~~~~~~~~~~~~~--~la~~l~~~~~~~~~p~~v~~liaG~d~~~--~~~Ly~vd~~G~~~ 136 (171)
.+|++.+...+.+.++.++..-|+.+..+ .-+..+.++++.-...=+...-+-||.+.+ +|.+..+.|.=+++
T Consensus 5 vg~aksW~~~lve~ak~l~v~~g~kp~tD~~a~~~ri~~liqS~~~~~~r~~yl~~ya~~~f~~~tiLsvtP~ms~y 81 (157)
T KOG2449|consen 5 VGAAKSWHPTLVEDAKVLKVNAGEKPQTDKYAPKVRIDKLIQSEDPLDGRFIYLPGYAEGNFVGPTILSVTPNMSCY 81 (157)
T ss_pred echhhhhhHHHHHhhhheEeccCCCCCccchhHHHHHHHHhcCcCccCCceEEeeccccCCcccceEEEecCCccee
Confidence 46788888888888999988888866443 345667777776321134455566676532 67777777766554
No 65
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=26.66 E-value=1.4e+02 Score=20.07 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHcCC-CCCHHHH
Q 030788 68 QTVSDYVRYFLHQHTIQLGQ-PATVKVA 94 (171)
Q Consensus 68 ~~l~~~~~~~~~~~~~~~~~-~~~~~~l 94 (171)
..+++.++.+++.|++.+++ +++.+.|
T Consensus 50 ~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 50 EAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 45677778888999999888 6666644
No 66
>KOG1930 consensus Focal adhesion protein Tensin, contains PTB domain [Signal transduction mechanisms; Cytoskeleton]
Probab=26.56 E-value=36 Score=28.89 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=12.5
Q ss_pred cCCCCCHHHHhhcC
Q 030788 158 WKEGMTKEEAEVCW 171 (171)
Q Consensus 158 ~~~~~s~~ea~~l~ 171 (171)
|+|++|.|+||+||
T Consensus 215 YKP~isREQAIalL 228 (483)
T KOG1930|consen 215 YKPNISREQAIALL 228 (483)
T ss_pred cCCCCCHHHHHHHh
Confidence 47899999999986
No 67
>KOG1593 consensus Asparaginase [Amino acid transport and metabolism]
Probab=25.94 E-value=1.9e+02 Score=23.30 Aligned_cols=56 Identities=7% Similarity=0.176 Sum_probs=34.9
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCCceeeEEEE
Q 030788 58 LCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVG 116 (171)
Q Consensus 58 ~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~p~~v~~lia 116 (171)
++.++-++|...+++.+-....-...+.|.+ +.+..-..|++++..+ |.....+|+
T Consensus 254 vGaa~aTGdGDvmMRFLPs~~aVe~Mr~G~~-P~eAa~~~i~RI~khf--p~F~gAvia 309 (349)
T KOG1593|consen 254 VGAAAATGDGDVMMRFLPSYQAVEQMRAGKK-PAEAAQKAISRILKHF--PDFSGAVIA 309 (349)
T ss_pred ccceeecCCchhHHHhhhHHHHHHHHHcCCC-hHHHHHHHHHHHHHhC--ccceeeEEE
Confidence 3566778899999999877665555666653 3344556677766554 533333443
No 68
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=25.93 E-value=96 Score=15.82 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=15.4
Q ss_pred EEEEEEeCCCCcEEEEECCCCc
Q 030788 113 MIVGGWDKYEGGKIYGVPLGGT 134 (171)
Q Consensus 113 ~liaG~d~~~~~~Ly~vd~~G~ 134 (171)
..+-|.-+ +.|.||.|-.+|.
T Consensus 6 ~~v~G~rP-g~pfl~~IpatG~ 26 (29)
T PF10632_consen 6 PRVFGARP-GSPFLFTIPATGE 26 (29)
T ss_pred CcEEcccC-CCcEEEEeeccCc
Confidence 44567777 6899999977774
No 69
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=25.52 E-value=2.3e+02 Score=19.42 Aligned_cols=54 Identities=22% Similarity=0.098 Sum_probs=37.6
Q ss_pred EEeCCCCcEE---EEECCC-CceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 117 GWDKYEGGKI---YGVPLG-GTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 117 G~d~~~~~~L---y~vd~~-G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+.++..|-.+ ..+|.. |.+.+..|.+.|...-.+..-+=..+-.+.|++||.++
T Consensus 29 ~~n~~CGD~i~i~l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i 86 (126)
T PF01592_consen 29 AGNPSCGDEIRIYLKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKI 86 (126)
T ss_dssp EEETTTTEEEEEEEEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCH
T ss_pred ecCCCCCCEEEEEEEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3455456554 467887 78889999999977766666555555568888888543
No 70
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=24.66 E-value=69 Score=21.57 Aligned_cols=16 Identities=13% Similarity=0.397 Sum_probs=12.8
Q ss_pred CCcEEEEECCCCceee
Q 030788 122 EGGKIYGVPLGGTIIE 137 (171)
Q Consensus 122 ~~~~Ly~vd~~G~~~~ 137 (171)
++|+||++||.+....
T Consensus 36 d~PrL~Yvdp~~~~~K 51 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVLK 51 (104)
T ss_dssp TTTEEEEEETTTTEEE
T ss_pred cCCEEEEEECCCCeEC
Confidence 4799999999886543
No 71
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=24.17 E-value=1.8e+02 Score=21.93 Aligned_cols=33 Identities=9% Similarity=0.016 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCC-ceeeEEEEEEeC
Q 030788 88 PATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDK 120 (171)
Q Consensus 88 ~~~~~~la~~l~~~~~~~~~p-~~v~~liaG~d~ 120 (171)
.-+|+.++..++++++.|+.. -.-.+++.||.-
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSF 77 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARWGRKRVVLIGYSF 77 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCceEEEEeecC
Confidence 468899999999998887422 223456677754
No 72
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=24.13 E-value=58 Score=21.40 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=10.7
Q ss_pred CCcEEEEECCCCc
Q 030788 122 EGGKIYGVPLGGT 134 (171)
Q Consensus 122 ~~~~Ly~vd~~G~ 134 (171)
++|+|+++||.-.
T Consensus 24 d~PrL~yvdp~~~ 36 (89)
T cd01262 24 NGPRLIYVDPVKK 36 (89)
T ss_pred cCceEEEEcCCcC
Confidence 4899999999743
No 73
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=24.06 E-value=74 Score=16.86 Aligned_cols=6 Identities=17% Similarity=0.019 Sum_probs=2.3
Q ss_pred EECCCC
Q 030788 128 GVPLGG 133 (171)
Q Consensus 128 ~vd~~G 133 (171)
..||.|
T Consensus 31 ~tdp~g 36 (42)
T TIGR01643 31 ITDADG 36 (42)
T ss_pred EECCCC
Confidence 333333
No 74
>PF00851 Peptidase_C6: Helper component proteinase; InterPro: IPR001456 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain represents the potyvirus helper component protease found in genome polyproteins of potyviruses. It is is a cysteine peptidase belonging to the MEROPS peptidase family C6 (clan CA). The genome polyprotein contains: N-terminal peptidase belonging to MEROPS peptidase family S30 (protein P1), helper component protease, MEROPS peptidase family C6, (3.4.22 from EC) (HC-PRO), protein P3, 6KD protein (6K1), cytoplasmic inclusion protein (CI), 6KD protein 2 (6K2), genome-linked protein (VPG), nuclear inclusion protein A (3.4.22 from EC), nuclear inclusion protein B (2.7.7.48 from EC) and coat protein (CP). The helper component-proteinase is required for aphid transmission.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3RNV_A.
Probab=23.08 E-value=3.7e+02 Score=23.24 Aligned_cols=130 Identities=18% Similarity=0.147 Sum_probs=42.9
Q ss_pred eEEEEEeCCeEEEeEeCCcccC--ceeeecCCCceEEec----CcEEEEecCC------------H--HHHHHHHHHHHH
Q 030788 17 TIIGVTYNGGVVLGADSRTSTG--VYVANRASDKITQLT----DNVYLCRSGS------------A--ADSQTVSDYVRY 76 (171)
Q Consensus 17 t~vgi~~~dgVvla~d~~~~~~--~~~~~~~~~Ki~~i~----~~i~~~~sG~------------~--~D~~~l~~~~~~ 76 (171)
+|..++..||--+-++-..+.+ +.+-+....|...+- ++++++-.|. . .|+..+.+.+|.
T Consensus 286 ~CcCVT~ddG~p~~S~~~~PTk~hlviGnsgD~k~idlP~~~~~~~yiak~GyCY~niFlaml~~v~e~~ak~ftk~vrD 365 (453)
T PF00851_consen 286 PCCCVTLDDGTPLYSELKMPTKNHLVIGNSGDPKYIDLPTTESGKMYIAKEGYCYINIFLAMLVNVNEEEAKDFTKMVRD 365 (453)
T ss_dssp --------------------------------------------------TT-TTHHHHHHHGGGS-GGGHHHHHHHHHH
T ss_pred EeeeEEcCCCcEeEeeeecCCCCeEEecCCCCcceeeCCCCCCCcEEeecCCchHHHHHHHHHccCChhHHHHHHHHHHH
Confidence 4556667777777776655543 334444445665552 3566665553 2 455566666663
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCCceeeEEEEEEeCCCCcEEEEECCCCceee-eCeEEeccchHHH
Q 030788 77 FLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIE-QPFAIGGSGSSYL 150 (171)
Q Consensus 77 ~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~-~~~~a~G~g~~~~ 150 (171)
.+- -..|.=++...+|..+..+.-.|.--..+.+=..=+|. ....+..+|+.|+... +..--.|.=++++
T Consensus 366 ~~~---~~LG~WPt~~dva~a~~~l~~~~P~~~~A~lP~ilVdH-~~kt~HV~ds~Gs~~~gyH~Lka~tV~qli 436 (453)
T PF00851_consen 366 QLV---PKLGKWPTMMDVATACYQLSVFFPETRNAELPRILVDH-ETKTMHVIDSFGSLSTGYHILKANTVSQLI 436 (453)
T ss_dssp THH---HHH-SS-BHHHHHHHHHHHHHHSGGGGG-B--EEEEET-TTTEEEEE--SSS-SSSTTB----BHHHHH
T ss_pred HHH---HHhCCCCCHHHHHHHHHHHHHhCCcccCCCCCcEEecC-CCceEEeccCCCCCCcCeeEEecCCHHHHH
Confidence 332 23566688888888877765555211222222222677 6788999999999765 4444345444443
No 75
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=23.02 E-value=58 Score=24.15 Aligned_cols=59 Identities=10% Similarity=0.118 Sum_probs=36.9
Q ss_pred eEEEEEeCCe-EEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHH
Q 030788 17 TIIGVTYNGG-VVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRY 76 (171)
Q Consensus 17 t~vgi~~~dg-Vvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~ 76 (171)
.+||..+.+| +-+.+.+..+...++ ..-.+.|-..++.+++++-|..-|...+.++++.
T Consensus 27 i~Is~~~~~g~~~~~~~~~~~E~~lL-~~F~~~i~~~dPd~i~gyN~~~FDlpyl~~Ra~~ 86 (188)
T cd05781 27 IVISLATSNGDVEFILAEGLDDRKII-REFVKYVKEYDPDIIVGYNSNAFDWPYLVERARV 86 (188)
T ss_pred EEEEEEeCCCCEEEEEecCCCHHHHH-HHHHHHHHHcCCCEEEecCCCcCcHHHHHHHHHH
Confidence 3466666544 333333222222222 1223556667889999999999999999999864
No 76
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=22.45 E-value=3.3e+02 Score=20.23 Aligned_cols=62 Identities=11% Similarity=0.213 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcee-e-EEEEEEe-CCCCcEEEEECC-CCceeeeCeEEeccchHH
Q 030788 88 PATVKVAANLVRLLSYNNKNFLQT-G-MIVGGWD-KYEGGKIYGVPL-GGTIIEQPFAIGGSGSSY 149 (171)
Q Consensus 88 ~~~~~~la~~l~~~~~~~~~p~~v-~-~liaG~d-~~~~~~Ly~vd~-~G~~~~~~~~a~G~g~~~ 149 (171)
.+.++.+...+..+.......+.- . +.|.=+. +.+.+++|.+|. .|.+.....+|.|.|+..
T Consensus 10 ~l~~~~~~~a~~~~~~~~~~~~~~~~~l~iIDfs~pS~~~R~~v~Dl~~~~~l~~~~VaHG~gsg~ 75 (176)
T PF13645_consen 10 KLSPKAFQKALKAYQCAKKKKIYNKDILTIIDFSKPSGEKRFFVIDLKKGKLLYNTLVAHGRGSGN 75 (176)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCCCCeEEEEECCCCEEEEeeeeecccCCCC
Confidence 356666655555443322221111 1 1122222 335789999998 555666789999988763
No 77
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=21.85 E-value=81 Score=21.68 Aligned_cols=24 Identities=21% Similarity=0.050 Sum_probs=18.7
Q ss_pred HHHHHHhhhhcCCCCCHHHHhhcC
Q 030788 148 SYLYGFFDQAWKEGMTKEEAEVCW 171 (171)
Q Consensus 148 ~~~~~~Le~~~~~~~s~~ea~~l~ 171 (171)
.....+|++.-+..+|.+||+++|
T Consensus 89 ~~~~~IL~~L~~GeIs~eeA~~~L 112 (113)
T PF09862_consen 89 DERKEILDKLEKGEISVEEALEIL 112 (113)
T ss_pred hhHHHHHHHHHcCCCCHHHHHHHh
Confidence 345567777777899999999875
No 78
>TIGR01999 iscU FeS cluster assembly scaffold IscU. This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms.
Probab=21.46 E-value=1.8e+02 Score=19.91 Aligned_cols=43 Identities=26% Similarity=0.208 Sum_probs=30.9
Q ss_pred EECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 128 GVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 128 ~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
.++..|.+.+..|.+.|.....+-.-+=..+-.+.|++||..+
T Consensus 44 ~v~~~~~I~d~~f~~~GC~~s~Asas~~~e~i~Gktl~ea~~i 86 (124)
T TIGR01999 44 KVNDDGIIEDAKFKTFGCGSAIASSSLATELIKGKSLEEALKI 86 (124)
T ss_pred EECCCCeEEEEEEEecCcHHHHHHHHHHHHHHcCCCHHHHHhc
Confidence 4566678888899988877766665444445568888888765
No 79
>PF13368 Toprim_C_rpt: Topoisomerase C-terminal repeat
Probab=21.24 E-value=1.7e+02 Score=17.40 Aligned_cols=19 Identities=26% Similarity=0.094 Sum_probs=12.6
Q ss_pred HhhhhcC-CCCCHHHHhhcC
Q 030788 153 FFDQAWK-EGMTKEEAEVCW 171 (171)
Q Consensus 153 ~Le~~~~-~~~s~~ea~~l~ 171 (171)
-|.+... .++|+++|++|+
T Consensus 26 slpk~~~~~~itle~a~~ll 45 (61)
T PF13368_consen 26 SLPKDEDPEEITLEEAVELL 45 (61)
T ss_pred ccCCCCCcccCCHHHHHHHH
Confidence 3444444 468999998874
No 80
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=20.91 E-value=3e+02 Score=20.59 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=32.6
Q ss_pred CceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHH
Q 030788 15 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVR 75 (171)
Q Consensus 15 g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~ 75 (171)
|.-..++...+.+.|+.-+..+.+.- .+.+-++.-++++.+...|..-+...+.+.+.
T Consensus 30 Gpd~~~~~~~~~~~lgh~rl~~~~~~---~~~qP~~~~~~~~~~~~nG~i~N~~~L~~~l~ 87 (220)
T cd00712 30 GPDGSGIWIDEGVALGHRRLSIIDLS---GGAQPMVSEDGRLVLVFNGEIYNYRELRAELE 87 (220)
T ss_pred CCCCCCEEEECCEEEEEEeeeecCcc---cCCCCeEeCCCCEEEEEEEEEeCHHHHHHHHH
Confidence 33334444444555555433333321 23344444446788899999888888777654
No 81
>PF14688 DUF4461: Domain of unknown function (DUF4461)
Probab=20.57 E-value=2.6e+02 Score=22.70 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=31.2
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCC--CC--ceeeEEEEEEeCCCCcEEEEECCCCcee-eeC
Q 030788 83 IQLGQPATVKVAANLVRLLSYNNK--NF--LQTGMIVGGWDKYEGGKIYGVPLGGTII-EQP 139 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~~--~p--~~v~~liaG~d~~~~~~Ly~vd~~G~~~-~~~ 139 (171)
++.+..++++.+.....+++.... .| .|.++.|. . -|.+-++|.+. +|+
T Consensus 258 L~kd~sit~~~mi~cc~rLl~~~~~~~~~l~g~~l~Is---~-----~ysv~~DG~icIPwd 311 (313)
T PF14688_consen 258 LTKDPSITPDQMISCCRRLLEQSEELLPYLQGLSLCIS---H-----YYSVLQDGDICIPWD 311 (313)
T ss_pred cccCCCCCHHHHHHHHHHHHhcccccccccCCCEEEEc---C-----ccccCCCCcEEecCC
Confidence 344567888888888888877542 34 55665553 2 26677888753 444
No 82
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=20.46 E-value=1.2e+02 Score=21.75 Aligned_cols=40 Identities=18% Similarity=0.370 Sum_probs=26.7
Q ss_pred CccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCc
Q 030788 12 HSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDN 55 (171)
Q Consensus 12 ~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~ 55 (171)
+-.|.||+=|++|||..|+..--.+-| -+--+|+..+++.
T Consensus 6 s~~gktcllir~kdgafl~~~fistvg----id~rnkli~~~~~ 45 (192)
T KOG0083|consen 6 SCTGKTCLLIRFKDGAFLAGNFISTVG----IDFRNKLIDMDDK 45 (192)
T ss_pred CccCceEEEEEeccCceecCceeeeee----eccccceeccCCc
Confidence 456889999999999999864332222 2234677766653
Done!