Query 030788
Match_columns 171
No_of_seqs 126 out of 1028
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 06:49:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ryp_C 20S proteasome; multica 100.0 3E-46 1E-50 289.6 17.4 167 4-170 20-191 (244)
2 1ryp_E 20S proteasome; multica 100.0 1.9E-46 6.5E-51 290.5 15.9 166 4-170 15-191 (242)
3 1ryp_D 20S proteasome; multica 100.0 4.3E-46 1.5E-50 288.3 17.3 167 4-170 17-192 (241)
4 1yar_A Proteasome alpha subuni 100.0 7.4E-46 2.5E-50 285.7 17.9 165 4-170 23-192 (233)
5 1iru_E 20S proteasome; cell cy 100.0 6.4E-46 2.2E-50 287.4 16.7 166 3-170 22-197 (241)
6 1iru_G 20S proteasome; cell cy 100.0 4E-46 1.4E-50 290.6 15.6 166 4-170 22-192 (254)
7 1iru_C 20S proteasome; cell cy 100.0 5E-46 1.7E-50 291.0 16.2 167 4-170 20-192 (261)
8 1ryp_A 20S proteasome; multica 100.0 5.1E-46 1.7E-50 288.3 15.3 166 4-170 18-196 (243)
9 1iru_B 20S proteasome; cell cy 100.0 1.2E-45 4.2E-50 284.5 16.8 165 4-170 20-189 (233)
10 1iru_D 20S proteasome; cell cy 100.0 9.3E-46 3.2E-50 287.6 16.1 166 4-170 18-190 (248)
11 3nzj_F Proteasome component C1 100.0 1.7E-45 5.9E-50 291.0 16.2 166 3-170 22-195 (288)
12 1ryp_H 20S proteasome; multica 100.0 2.1E-44 7.2E-49 272.6 21.2 162 8-170 2-163 (205)
13 1ryp_G 20S proteasome; multica 100.0 2.8E-45 9.6E-50 284.3 16.4 166 3-170 18-191 (244)
14 1yar_H Proteasome beta subunit 100.0 2.6E-44 8.9E-49 274.4 21.3 160 9-170 2-162 (217)
15 3h4p_A Proteasome subunit alph 100.0 6.3E-46 2.1E-50 290.7 12.6 166 3-170 26-196 (264)
16 1iru_A 20S proteasome; cell cy 100.0 3.6E-45 1.2E-49 283.9 15.5 166 4-170 24-197 (246)
17 3nzj_H Proteasome component PU 100.0 3.6E-44 1.2E-48 280.1 21.1 164 6-170 20-183 (261)
18 1j2p_A Alpha-ring, proteasome 100.0 1E-44 3.5E-49 281.4 17.6 164 4-170 23-191 (246)
19 1ryp_F 20S proteasome; multica 100.0 4.7E-45 1.6E-49 281.2 15.5 163 4-170 20-191 (233)
20 3mi0_A Proteasome subunit alph 100.0 4.3E-45 1.5E-49 283.4 15.2 162 1-170 13-183 (248)
21 1iru_M 20S proteasome; cell cy 100.0 1.4E-43 4.8E-48 269.5 22.8 162 9-170 3-174 (213)
22 1ryp_B 20S proteasome; multica 100.0 1.4E-44 4.8E-49 281.2 16.8 166 4-170 20-191 (250)
23 3h4p_a Proteasome subunit beta 100.0 7.3E-44 2.5E-48 272.3 20.3 156 15-170 1-158 (219)
24 3nzj_K Proteasome component PR 100.0 8.5E-44 2.9E-48 281.2 20.4 164 7-170 67-231 (287)
25 1iru_H 20S proteasome; cell cy 100.0 2.4E-43 8.3E-48 266.8 20.3 155 16-170 1-155 (205)
26 1ryp_M 20S proteasome; multica 100.0 5.4E-43 1.8E-47 268.0 22.4 163 8-170 2-183 (222)
27 1iru_F 20S proteasome; cell cy 100.0 3E-44 1E-48 281.2 15.7 163 4-170 21-190 (263)
28 1j2q_H Proteasome beta subunit 100.0 4.2E-43 1.4E-47 264.9 21.3 154 16-170 1-156 (202)
29 1ryp_K 20S proteasome; multica 100.0 3.2E-43 1.1E-47 264.7 19.8 156 15-170 1-160 (198)
30 3unf_H Proteasome subunit beta 100.0 5E-43 1.7E-47 270.0 20.9 154 16-170 1-154 (234)
31 1iru_N 20S proteasome; cell cy 100.0 1.7E-43 6E-48 270.1 18.0 161 9-170 2-168 (219)
32 1ryp_N 20S proteasome; multica 100.0 1.8E-43 6.2E-48 272.4 17.9 162 9-170 2-176 (233)
33 1ryp_L 20S proteasome; multica 100.0 1.4E-42 4.7E-47 263.9 20.7 155 16-170 1-156 (212)
34 1ryp_I 20S proteasome; multica 100.0 1.6E-42 5.3E-47 265.4 21.0 154 16-170 1-154 (222)
35 1q5r_H Proteasome beta-type su 100.0 9.3E-43 3.2E-47 276.1 20.4 163 8-170 58-231 (294)
36 1iru_L 20S proteasome; cell cy 100.0 1.9E-42 6.5E-47 261.7 20.8 154 16-170 1-155 (204)
37 1iru_J 20S proteasome; cell cy 100.0 2.7E-42 9.1E-47 261.1 21.5 161 10-170 3-166 (205)
38 1ryp_J 20S proteasome; multica 100.0 6.2E-42 2.1E-46 258.9 21.5 160 10-170 3-165 (204)
39 1iru_I 20S proteasome; cell cy 100.0 6.3E-42 2.2E-46 263.9 21.4 154 16-170 1-154 (234)
40 2jay_A Proteasome; hydrolase; 100.0 2E-42 6.7E-47 274.0 19.1 164 6-170 49-223 (291)
41 1g0u_M Proteasome component PR 100.0 1.2E-42 4.2E-47 272.5 17.7 166 5-170 31-209 (266)
42 1iru_K 20S proteasome; cell cy 100.0 6.6E-42 2.3E-46 258.2 20.1 156 15-170 1-159 (201)
43 1q5q_A Proteasome alpha-type s 100.0 9.5E-43 3.2E-47 272.1 14.8 160 3-170 15-183 (259)
44 1q5q_H Proteasome beta-type su 100.0 2.3E-41 7.9E-46 260.9 20.6 155 16-170 1-166 (235)
45 3unf_N Proteasome subunit beta 100.0 3.2E-41 1.1E-45 254.0 18.6 153 16-170 1-154 (199)
46 2z3b_A ATP-dependent protease 100.0 1.6E-34 5.4E-39 214.5 17.1 146 12-168 2-156 (180)
47 1m4y_A ATP-dependent protease 100.0 5.6E-34 1.9E-38 209.8 17.1 142 16-168 1-148 (171)
48 1g3k_A ATP-dependent protease 100.0 1.5E-33 5.1E-38 208.1 17.3 142 16-168 1-149 (174)
49 4eo3_A Bacterioferritin comigr 47.2 4.9 0.00017 31.4 0.5 46 124-169 103-149 (322)
50 3lvl_A NIFU-like protein; prot 38.9 46 0.0016 22.2 4.4 53 118-170 34-89 (129)
51 2z7e_A ISCU protein, NIFU-like 26.8 92 0.0031 21.6 4.4 53 118-170 32-88 (157)
52 2l60_A Peptide YY; GPCR ligand 23.1 55 0.0019 17.4 2.0 20 85-104 12-31 (41)
53 3kol_A Oxidoreductase, glyoxal 22.8 76 0.0026 20.4 3.3 17 122-138 132-148 (156)
54 2kxe_A DNA polymerase II small 22.7 46 0.0016 19.7 1.8 23 148-170 20-43 (75)
55 4g6x_A Glyoxalase/bleomycin re 21.9 1.1E+02 0.0039 20.0 4.1 21 118-138 128-148 (155)
No 1
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=3e-46 Score=289.65 Aligned_cols=167 Identities=17% Similarity=0.239 Sum_probs=159.9
Q ss_pred cccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (171)
Q Consensus 4 ~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (171)
|.|||++|+++|+|+|||+++||||||+|+|.+.++++.+++.+||++|++||+|++||..+|++.++++++.+++.|++
T Consensus 20 QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~ 99 (244)
T 1ryp_C 20 QVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLK 99 (244)
T ss_dssp HHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999887678899999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhc
Q 030788 84 QLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (171)
Q Consensus 84 ~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 158 (171)
.++++++++.+++.+++++|.+ .|||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|
T Consensus 100 ~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~ 179 (244)
T 1ryp_C 100 TYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDY 179 (244)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhh
Confidence 9999999999999999999765 47999999999999447999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhhc
Q 030788 159 KEGMTKEEAEVC 170 (171)
Q Consensus 159 ~~~~s~~ea~~l 170 (171)
+++||++||+++
T Consensus 180 ~~~ms~eea~~l 191 (244)
T 1ryp_C 180 KDDMKVDDAIEL 191 (244)
T ss_dssp CTTCCHHHHHHH
T ss_pred hcCCCHHHHHHH
Confidence 999999999986
No 2
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.9e-46 Score=290.48 Aligned_cols=166 Identities=22% Similarity=0.308 Sum_probs=159.6
Q ss_pred cccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (171)
Q Consensus 4 ~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (171)
|.|||++|+++|+|+|||+++||||||+|+|.+.++++ +++.+||++|++||+|++||..+|++.++++++.+++.|++
T Consensus 15 QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~ 93 (242)
T 1ryp_E 15 QVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNL 93 (242)
T ss_dssp HHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999887 78899999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcC-----------CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHH
Q 030788 84 QLGQPATVKVAANLVRLLSYNN-----------KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYG 152 (171)
Q Consensus 84 ~~~~~~~~~~la~~l~~~~~~~-----------~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~ 152 (171)
+++++++++.+++.+++++|.+ .|||++++||||||++++|+||.+||+|++.+++++|+|+|++++++
T Consensus 94 ~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~ 173 (242)
T 1ryp_E 94 YYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQA 173 (242)
T ss_dssp HHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHH
Confidence 9999999999999999999875 57999999999999557999999999999999999999999999999
Q ss_pred HhhhhcCCCCCHHHHhhc
Q 030788 153 FFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 153 ~Le~~~~~~~s~~ea~~l 170 (171)
+||+.|+++||++||+++
T Consensus 174 ~Le~~~~~~ms~eea~~l 191 (242)
T 1ryp_E 174 ELLNEWHSSLTLKEAELL 191 (242)
T ss_dssp HHHHHCCTTCCHHHHHHH
T ss_pred HHHHhhccCCCHHHHHHH
Confidence 999999999999999876
No 3
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=4.3e-46 Score=288.33 Aligned_cols=167 Identities=22% Similarity=0.278 Sum_probs=160.4
Q ss_pred cccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (171)
Q Consensus 4 ~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (171)
|.|||++|+++|+|+|||+++||||||+|+|.+.++++.+.+.+||++|++||+|+++|+.+|++.+.++++.+++.|++
T Consensus 17 QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~ 96 (241)
T 1ryp_D 17 QVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRL 96 (241)
T ss_dssp HHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999988776899999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCC-----CCceeeEEEEEEeCC-CCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 84 QLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKY-EGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 84 ~~~~~~~~~~la~~l~~~~~~~~-----~p~~v~~liaG~d~~-~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
+++++++++.+++.+++++|.++ |||++++||||||++ ++|+||.+||+|++.+++++|+|+++++++++||+.
T Consensus 97 ~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~ 176 (241)
T 1ryp_D 97 TLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKN 176 (241)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHh
Confidence 99999999999999999999863 699999999999985 689999999999999999999999999999999999
Q ss_pred c---CCCCCHHHHhhc
Q 030788 158 W---KEGMTKEEAEVC 170 (171)
Q Consensus 158 ~---~~~~s~~ea~~l 170 (171)
| +++||++||++|
T Consensus 177 ~~~~~~~ms~eea~~l 192 (241)
T 1ryp_D 177 YDRKEPPATVEECVKL 192 (241)
T ss_dssp CCTTSCCCSHHHHHHH
T ss_pred hhcccCCCCHHHHHHH
Confidence 9 999999999876
No 4
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=7.4e-46 Score=285.70 Aligned_cols=165 Identities=22% Similarity=0.353 Sum_probs=158.2
Q ss_pred cccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (171)
Q Consensus 4 ~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (171)
|.|||++|+++|+|+|||+++||||||+|+|.+.++ +.+++.+||++|++||+|++||..+|++.+.++++.+++.|++
T Consensus 23 QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~-~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~ 101 (233)
T 1yar_A 23 QVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRL-IEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKV 101 (233)
T ss_dssp HHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTT-BCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCccc-ccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999985 4577889999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCC-----CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhc
Q 030788 84 QLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (171)
Q Consensus 84 ~~~~~~~~~~la~~l~~~~~~~~-----~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 158 (171)
+++++++++.+++.+++++|.++ |||++++||||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.|
T Consensus 102 ~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~ 180 (233)
T 1yar_A 102 TYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREY 180 (233)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHh
Confidence 99999999999999999999764 69999999999998 7999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhhc
Q 030788 159 KEGMTKEEAEVC 170 (171)
Q Consensus 159 ~~~~s~~ea~~l 170 (171)
+++||++||+++
T Consensus 181 ~~~~s~eea~~l 192 (233)
T 1yar_A 181 KENLPEKEAVTL 192 (233)
T ss_dssp CTTCCHHHHHHH
T ss_pred ccCCCHHHHHHH
Confidence 999999999886
No 5
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=6.4e-46 Score=287.38 Aligned_cols=166 Identities=22% Similarity=0.295 Sum_probs=159.4
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
.|.|||++|+++|+|+|||+++||||||+|+|.+.++++ +++.+||++|++|++|++||..+|++.++++++.+++.|+
T Consensus 22 ~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 100 (241)
T 1iru_E 22 FQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHW 100 (241)
T ss_dssp HHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999887 7889999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC----------CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHH
Q 030788 83 IQLGQPATVKVAANLVRLLSYNN----------KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYG 152 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~----------~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~ 152 (171)
.+++++++++.+++.+++++|.+ .|||++++||||||+ ++|+||.+||+|++.+++++|+|+|++++++
T Consensus 101 ~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~ 179 (241)
T 1iru_E 101 FTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQS 179 (241)
T ss_dssp HHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEEEEECCCCcEEecceEEECCCcHHHHH
Confidence 99999999999999999999776 469999999999995 7999999999999999999999999999999
Q ss_pred HhhhhcCCCCCHHHHhhc
Q 030788 153 FFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 153 ~Le~~~~~~~s~~ea~~l 170 (171)
+||+.|+++||++||+++
T Consensus 180 ~Le~~~~~~ms~eea~~l 197 (241)
T 1iru_E 180 SLQELYHKSMTLKEAIKS 197 (241)
T ss_dssp HHHHHCCTTCCHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHH
Confidence 999999999999999986
No 6
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=4e-46 Score=290.58 Aligned_cols=166 Identities=16% Similarity=0.189 Sum_probs=159.6
Q ss_pred cccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (171)
Q Consensus 4 ~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (171)
|.|||++|+++|+|+|||+++||||||+|+|.+.++++. .+.+||++|++||+|+++|..+|++.++++++.+++.|++
T Consensus 22 QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~ 100 (254)
T 1iru_G 22 QVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRS 100 (254)
T ss_dssp HHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999998874 6889999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCC-----CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhc
Q 030788 84 QLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (171)
Q Consensus 84 ~~~~~~~~~~la~~l~~~~~~~~-----~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 158 (171)
+++++++++.+++.+++++|.++ |||++++||||||++++|+||.+||+|++.+++++|+|+++++++++||+.|
T Consensus 101 ~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~ 180 (254)
T 1iru_G 101 NFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ 180 (254)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSC
T ss_pred HhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhc
Confidence 99999999999999999998874 7999999999999557999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhhc
Q 030788 159 KEGMTKEEAEVC 170 (171)
Q Consensus 159 ~~~~s~~ea~~l 170 (171)
+++||++||+++
T Consensus 181 ~~~ms~eea~~l 192 (254)
T 1iru_G 181 MKEMTCRDIVKE 192 (254)
T ss_dssp GGGCCHHHHHHH
T ss_pred cCCCCHHHHHHH
Confidence 999999999985
No 7
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=5e-46 Score=291.03 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=161.0
Q ss_pred cccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (171)
Q Consensus 4 ~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (171)
|.|||++|+++|+|+|||+++||||||+|+|.+.++++.+++.+||++|++||+|++||+.+|++.++++++.+++.|++
T Consensus 20 QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~ 99 (261)
T 1iru_C 20 QVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLL 99 (261)
T ss_dssp HHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999998877789999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCC-----CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhc
Q 030788 84 QLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (171)
Q Consensus 84 ~~~~~~~~~~la~~l~~~~~~~~-----~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 158 (171)
.++++++++.+++.+++++|.++ |||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|
T Consensus 100 ~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~ 179 (261)
T 1iru_C 100 QYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY 179 (261)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhh
Confidence 99999999999999999998874 6999999999999757999999999999999999999999999999999999
Q ss_pred CC-CCCHHHHhhc
Q 030788 159 KE-GMTKEEAEVC 170 (171)
Q Consensus 159 ~~-~~s~~ea~~l 170 (171)
++ +||++||+++
T Consensus 180 ~~~~ms~eeA~~l 192 (261)
T 1iru_C 180 KEGEMTLKSALAL 192 (261)
T ss_dssp CTTCCCHHHHHHH
T ss_pred ccCCCCHHHHHHH
Confidence 99 9999999986
No 8
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=5.1e-46 Score=288.26 Aligned_cols=166 Identities=12% Similarity=0.063 Sum_probs=157.3
Q ss_pred cccCCCCCCcc-CceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSM-GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 4 ~~~ya~~a~~~-g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
|.|||++|+++ |+|+|||+++||||||+|+|.+. .++.+++.+||++|++||+|+++|+.+|++.++++++.+++.|+
T Consensus 18 QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~-~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~ 96 (243)
T 1ryp_A 18 QVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPD-KLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFR 96 (243)
T ss_dssp HHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCC-TTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCc-cccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHH
Confidence 67999999999 99999999999999999999994 45567789999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
+.++++++++.+++.+++++|.| .+||++++||||||++++|+||.+||+|++.+++++|+|++++.++++||+.
T Consensus 97 ~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~ 176 (243)
T 1ryp_A 97 YKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENH 176 (243)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHH
Confidence 99999999999999999999544 3799999999999976799999999999999999999999999999999999
Q ss_pred cCC-------CCCHHHHhhc
Q 030788 158 WKE-------GMTKEEAEVC 170 (171)
Q Consensus 158 ~~~-------~~s~~ea~~l 170 (171)
|++ +||++||++|
T Consensus 177 ~~~~~~~~~~~ms~eea~~l 196 (243)
T 1ryp_A 177 FKKSKIDHINEESWEKVVEF 196 (243)
T ss_dssp HHHHCSSSCCCSSHHHHHHH
T ss_pred hhhcccccccCCCHHHHHHH
Confidence 999 9999999986
No 9
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1.2e-45 Score=284.45 Aligned_cols=165 Identities=16% Similarity=0.256 Sum_probs=157.3
Q ss_pred cccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (171)
Q Consensus 4 ~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (171)
|.|||++|+++|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++
T Consensus 20 QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~-~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~ 98 (233)
T 1iru_B 20 QIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYL 98 (233)
T ss_dssp HHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCC-SSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCc-cccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999995 455677889999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCC-----CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhc
Q 030788 84 QLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (171)
Q Consensus 84 ~~~~~~~~~~la~~l~~~~~~~~-----~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 158 (171)
+++++++++.+++++++++|.++ |||++++||||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.|
T Consensus 99 ~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~ 177 (233)
T 1iru_B 99 VYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRY 177 (233)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHh
Confidence 99999999999999999998763 69999999999996 7899999999999999999999999999999999999
Q ss_pred CCCCCHHHHhhc
Q 030788 159 KEGMTKEEAEVC 170 (171)
Q Consensus 159 ~~~~s~~ea~~l 170 (171)
+++||++||+++
T Consensus 178 ~~~ms~eea~~l 189 (233)
T 1iru_B 178 NEDLELEDAIHT 189 (233)
T ss_dssp CTTCCHHHHHHH
T ss_pred ccCCCHHHHHHH
Confidence 999999999986
No 10
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=9.3e-46 Score=287.59 Aligned_cols=166 Identities=21% Similarity=0.290 Sum_probs=158.6
Q ss_pred cccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (171)
Q Consensus 4 ~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (171)
|.|||++|+++|+|+|||+++||||||+|+|.+.++ +..++.+||++|++||+|+++|+.+|++.++++++.+++.|++
T Consensus 18 QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l-~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~ 96 (248)
T 1iru_D 18 QVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRL 96 (248)
T ss_dssp HHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSS-SCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccC-ccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999985 4567889999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCC-----CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhc
Q 030788 84 QLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (171)
Q Consensus 84 ~~~~~~~~~~la~~l~~~~~~~~-----~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 158 (171)
+++++++++.+++.+++++|.++ |||++++||||||++++|+||.+||+|++.+++++|+|+++++++++||+.|
T Consensus 97 ~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~ 176 (248)
T 1iru_D 97 TVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNY 176 (248)
T ss_dssp HSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhh
Confidence 99999999999999999998873 6999999999999557999999999999999999999999999999999999
Q ss_pred CCCC--CHHHHhhc
Q 030788 159 KEGM--TKEEAEVC 170 (171)
Q Consensus 159 ~~~~--s~~ea~~l 170 (171)
+++| |++||+++
T Consensus 177 ~~~m~~s~eea~~l 190 (248)
T 1iru_D 177 TDEAIETDDLTIKL 190 (248)
T ss_dssp CSSTTCSHHHHHHH
T ss_pred cccccCCHHHHHHH
Confidence 9999 99999886
No 11
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=1.7e-45 Score=291.00 Aligned_cols=166 Identities=20% Similarity=0.232 Sum_probs=159.0
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
.|.|||++|+++|+|+|||+++||||||+|+|.+.++++.. ..+||++|++||+|+++|+.+|++.++++++.+++.|+
T Consensus 22 ~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~ 100 (288)
T 3nzj_F 22 FQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFK 100 (288)
T ss_dssp HHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999988764 67999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCC-----CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~~-----~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
+.++++++++.+++.+++++|.++ |||+|++||||||+ +||+||.+||+|++.+++++|+|+++++++++||+.
T Consensus 101 ~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~ 179 (288)
T 3nzj_F 101 KLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKL 179 (288)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred HHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHh
Confidence 999999999999999999998873 69999999999999 789999999999999999999999999999999999
Q ss_pred ---cCCCCCHHHHhhc
Q 030788 158 ---WKEGMTKEEAEVC 170 (171)
Q Consensus 158 ---~~~~~s~~ea~~l 170 (171)
|+++||++||++|
T Consensus 180 ~~~~~~~ms~eEAv~l 195 (288)
T 3nzj_F 180 VDHHPEGLSAREAVKQ 195 (288)
T ss_dssp HHHCTTCCCHHHHHHH
T ss_pred ccccCCCCCHHHHHHH
Confidence 9999999999986
No 12
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=2.1e-44 Score=272.64 Aligned_cols=162 Identities=45% Similarity=0.838 Sum_probs=156.3
Q ss_pred CCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 030788 8 FNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQ 87 (171)
Q Consensus 8 a~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (171)
.++|+++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.+++
T Consensus 2 ~~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (205)
T 1ryp_H 2 KKGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT 81 (205)
T ss_dssp CTTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 47899999999999999999999999999997778888999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHH
Q 030788 88 PATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEA 167 (171)
Q Consensus 88 ~~~~~~la~~l~~~~~~~~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 167 (171)
++++.+++.+++.+|.++..|++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||
T Consensus 82 -~~v~~la~~l~~~~~~~~~~~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea 160 (205)
T 1ryp_H 82 -PSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEET 160 (205)
T ss_dssp -CCHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHH
T ss_pred -CCHHHHHHHHHHHHHhhhcCceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHHHH
Confidence 9999999999999999987799999999999867899999999999999999999999999999999999999999999
Q ss_pred hhc
Q 030788 168 EVC 170 (171)
Q Consensus 168 ~~l 170 (171)
+++
T Consensus 161 ~~l 163 (205)
T 1ryp_H 161 VDF 163 (205)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
No 13
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=2.8e-45 Score=284.25 Aligned_cols=166 Identities=20% Similarity=0.235 Sum_probs=158.3
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
.|.|||++|+++|+|+|||+++||||||+|+|.+.++++.++ .+||++|++||+|++||..+|++.++++++.+++.|+
T Consensus 18 ~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 96 (244)
T 1ryp_G 18 FQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFK 96 (244)
T ss_dssp HHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccc-cCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHH
Confidence 477999999999999999999999999999999999887654 5999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
++++++++++.+++.+++++|.+ .+||++++||||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.
T Consensus 97 ~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~ 175 (244)
T 1ryp_G 97 KLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKL 175 (244)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHh
Confidence 99999999999999999999876 389999999999997 799999999999999999999999999999999997
Q ss_pred ---cCCCCCHHHHhhc
Q 030788 158 ---WKEGMTKEEAEVC 170 (171)
Q Consensus 158 ---~~~~~s~~ea~~l 170 (171)
|+++||++||+++
T Consensus 176 ~~~~~~~ms~eea~~l 191 (244)
T 1ryp_G 176 VDHHPEGLSAREAVKQ 191 (244)
T ss_dssp HHHCTTCCCHHHHHHH
T ss_pred HhhcCCCCCHHHHHHH
Confidence 9999999999986
No 14
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=2.6e-44 Score=274.40 Aligned_cols=160 Identities=23% Similarity=0.395 Sum_probs=148.6
Q ss_pred CCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 030788 9 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQP 88 (171)
Q Consensus 9 ~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 88 (171)
.+++.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++|++||..+|++.++++++.+++.|+++++++
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T 1yar_H 2 NQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN 81 (217)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 46889999999999999999999999999878888899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCC-CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHH
Q 030788 89 ATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEA 167 (171)
Q Consensus 89 ~~~~~la~~l~~~~~~~~-~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 167 (171)
++++.+++.+++.+|.++ |||++++|+|||| +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||
T Consensus 82 ~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea 159 (217)
T 1yar_H 82 MPIEAVATLLSNMLNQVKYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEG 159 (217)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHH
Confidence 999999999999999876 7999999999999 5899999999999999999999999999999999999999999999
Q ss_pred hhc
Q 030788 168 EVC 170 (171)
Q Consensus 168 ~~l 170 (171)
+++
T Consensus 160 ~~l 162 (217)
T 1yar_H 160 VDL 162 (217)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 15
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=6.3e-46 Score=290.74 Aligned_cols=166 Identities=23% Similarity=0.362 Sum_probs=158.6
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
.|.|||++|+++|+|+|||+++||||||+|+|.+.++ +.+++.+||++|++||+|+++|+.+|++.++++++.+++.|+
T Consensus 26 ~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~l-i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~ 104 (264)
T 3h4p_A 26 YQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKL-VKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYR 104 (264)
T ss_dssp HHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTT-BCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHH
T ss_pred HHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCc-cccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhH
Confidence 3679999999999999999999999999999999985 457889999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCC-----CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~~-----~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
+.++++++++.+++.+++++|.++ |||++++||||||+ ++|+||.+||+|++.+++++|+|+++++++++||+.
T Consensus 105 ~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~ 183 (264)
T 3h4p_A 105 LTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKE 183 (264)
T ss_dssp HTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHh
Confidence 999999999999999999998763 69999999999997 799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhhc
Q 030788 158 WKEGMTKEEAEVC 170 (171)
Q Consensus 158 ~~~~~s~~ea~~l 170 (171)
|+++||++||++|
T Consensus 184 ~~~~ms~eea~~l 196 (264)
T 3h4p_A 184 YRDDITLDEGLEL 196 (264)
T ss_dssp CCTTCCSHHHHHH
T ss_pred ccCCCCHHHHHHH
Confidence 9999999999986
No 16
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=3.6e-45 Score=283.94 Aligned_cols=166 Identities=17% Similarity=0.177 Sum_probs=157.0
Q ss_pred cccCCCCCCcc-CceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSM-GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 4 ~~~ya~~a~~~-g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
|.|||++|+++ |+|+|||+++||||||+|+|.+. .++.+.+.+||++|++|++|+++|..+|++.+.++++.+++.|+
T Consensus 24 QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~-~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 102 (246)
T 1iru_A 24 QVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPD-KLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWK 102 (246)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCC-SSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCC-cccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 67999999999 99999999999999999999995 55667789999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
++++++++++.+++.+++++|.+ .|||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.
T Consensus 103 ~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~ 182 (246)
T 1iru_A 103 YKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKK 182 (246)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHh
Confidence 99999999999999999987554 3799999999999976799999999999999999999999999999999999
Q ss_pred cCC--CCCHHHHhhc
Q 030788 158 WKE--GMTKEEAEVC 170 (171)
Q Consensus 158 ~~~--~~s~~ea~~l 170 (171)
|++ +||++||+++
T Consensus 183 ~~~~~~ms~eea~~l 197 (246)
T 1iru_A 183 VKKKFDWTFEQTVET 197 (246)
T ss_dssp TTSCCCCCHHHHHHH
T ss_pred hcccCCCCHHHHHHH
Confidence 999 9999999876
No 17
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=3.6e-44 Score=280.14 Aligned_cols=164 Identities=26% Similarity=0.453 Sum_probs=150.7
Q ss_pred cCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHc
Q 030788 6 EDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQL 85 (171)
Q Consensus 6 ~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 85 (171)
.-+++|+++|+|+|||+++||||||+|+|.+.+.++.+.+.+||++|++||+|++||..+|++.+.++++.+++.|++.+
T Consensus 20 ~~~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~ 99 (261)
T 3nzj_H 20 HTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYT 99 (261)
T ss_dssp ----------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhh
Confidence 34679999999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHH
Q 030788 86 GQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKE 165 (171)
Q Consensus 86 ~~~~~~~~la~~l~~~~~~~~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ 165 (171)
+++++++.+++.+++.++.+++||++++||||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++
T Consensus 100 ~~~~~v~~~a~~l~~~l~~~~~~~gv~llvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~e 178 (261)
T 3nzj_H 100 SREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKE 178 (261)
T ss_dssp TSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCcccEEEEEEEEeC-CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCHH
Confidence 99999999999999999999999999999999998 68999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 030788 166 EAEVC 170 (171)
Q Consensus 166 ea~~l 170 (171)
||++|
T Consensus 179 EA~~l 183 (261)
T 3nzj_H 179 EAIKL 183 (261)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 18
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1e-44 Score=281.43 Aligned_cols=164 Identities=22% Similarity=0.340 Sum_probs=157.0
Q ss_pred cccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (171)
Q Consensus 4 ~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (171)
|.|||++|+++|+|+|||+++||||||+|+|.+.+++. +++.+||++|++||+|+++|..+|++.++++++.+++.|++
T Consensus 23 QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~ 101 (246)
T 1j2p_A 23 QVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLE-KDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRL 101 (246)
T ss_dssp HHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBC-GGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccc-cCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999998654 77889999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCC-----CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhc
Q 030788 84 QLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (171)
Q Consensus 84 ~~~~~~~~~~la~~l~~~~~~~~-----~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 158 (171)
.++++++++.+++.+++++|.++ |||++++|||||| ++|+||.+||+|++.+++++|+|+|+++++++||+.|
T Consensus 102 ~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~ 179 (246)
T 1j2p_A 102 TYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEY 179 (246)
T ss_dssp HSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHC
T ss_pred HhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHh
Confidence 99999999999999999998763 5999999999999 6899999999999999999999999999999999999
Q ss_pred CCCCCHHHHhhc
Q 030788 159 KEGMTKEEAEVC 170 (171)
Q Consensus 159 ~~~~s~~ea~~l 170 (171)
+++||++||+++
T Consensus 180 ~~~ms~eea~~l 191 (246)
T 1j2p_A 180 RDDLSFDDAMVL 191 (246)
T ss_dssp CTTCCHHHHHHH
T ss_pred ccCCCHHHHHHH
Confidence 999999999886
No 19
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=4.7e-45 Score=281.24 Aligned_cols=163 Identities=19% Similarity=0.245 Sum_probs=155.7
Q ss_pred cccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (171)
Q Consensus 4 ~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (171)
|.|||++|+++|+|+|||+++||||||+|+|.+.++. .+.+||++|++||+|++||..+|++.+.++++.+++.|++
T Consensus 20 QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~ 96 (233)
T 1ryp_F 20 QVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSL 96 (233)
T ss_dssp HHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999864 3679999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhc
Q 030788 84 QLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (171)
Q Consensus 84 ~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 158 (171)
+++++++++.+++.+++++|.+ .|||++++||||||+ +||+||.+||+|++.+++++|+|+++++++++||+.|
T Consensus 97 ~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~ 175 (233)
T 1ryp_F 97 VFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTL 175 (233)
T ss_dssp HHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHh
Confidence 9999999999999999999754 479999999999998 7899999999999999999999999999999999999
Q ss_pred CC--CC--CHHHHhhc
Q 030788 159 KE--GM--TKEEAEVC 170 (171)
Q Consensus 159 ~~--~~--s~~ea~~l 170 (171)
++ +| |++||+++
T Consensus 176 ~~~~~m~~s~eea~~~ 191 (233)
T 1ryp_F 176 DTFIKIDGNPDELIKA 191 (233)
T ss_dssp HHHTTCCSCHHHHHHH
T ss_pred ccccccCCCHHHHHHH
Confidence 98 99 99999975
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=4.3e-45 Score=283.44 Aligned_cols=162 Identities=17% Similarity=0.225 Sum_probs=150.7
Q ss_pred CCccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHH
Q 030788 1 MDLKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQ 80 (171)
Q Consensus 1 ~~~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~ 80 (171)
|..|.|||++|+++|+|+|||+++||||||+|+| +.+.+||++|++||+|+++|+.+|++.+.+.++..++.
T Consensus 13 ~~~r~EYA~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l 84 (248)
T 3mi0_A 13 MRERSELARKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADT 84 (248)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999998 24679999999999999999999999999999999999
Q ss_pred HHHHcC-CCCCHHHHHHHHH-HHHhcC---CCCceeeEEEEEEeC---CCCcEEEEECCCCcee-eeCeEEeccchHHHH
Q 030788 81 HTIQLG-QPATVKVAANLVR-LLSYNN---KNFLQTGMIVGGWDK---YEGGKIYGVPLGGTII-EQPFAIGGSGSSYLY 151 (171)
Q Consensus 81 ~~~~~~-~~~~~~~la~~l~-~~~~~~---~~p~~v~~liaG~d~---~~~~~Ly~vd~~G~~~-~~~~~a~G~g~~~~~ 151 (171)
|++.++ ++++++.+++.++ .+.|.+ .|||+|++||||||+ +++|+||.+||+|++. +++++|+|++++.++
T Consensus 85 ~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~ 164 (248)
T 3mi0_A 85 RGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIA 164 (248)
T ss_dssp HHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHH
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHH
Confidence 999999 8999999999999 444433 589999999999997 4799999999999999 499999999999999
Q ss_pred HHhhhhcCCCCCHHHHhhc
Q 030788 152 GFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 152 ~~Le~~~~~~~s~~ea~~l 170 (171)
++||+.|+++||++||++|
T Consensus 165 ~~Le~~y~~~mt~eeai~l 183 (248)
T 3mi0_A 165 NALKESYAENASLTDALRI 183 (248)
T ss_dssp HHHHHHCCTTCCHHHHHHH
T ss_pred HHHHhhcCCCCCHHHHHHH
Confidence 9999999999999999986
No 21
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.4e-43 Score=269.54 Aligned_cols=162 Identities=22% Similarity=0.265 Sum_probs=154.7
Q ss_pred CCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 030788 9 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQP 88 (171)
Q Consensus 9 ~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 88 (171)
.+.+++|+|+|||+++||||||+|+|.+.+.++.+.+.+||++|++||+|++||..+|++.+.++++.+++.|++.++++
T Consensus 3 ~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 82 (213)
T 1iru_M 3 SPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKA 82 (213)
T ss_dssp CSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46688999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCC-CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh---------c
Q 030788 89 ATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA---------W 158 (171)
Q Consensus 89 ~~~~~la~~l~~~~~~~~-~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~---------~ 158 (171)
++++.+++.+++.++.++ +||++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+. |
T Consensus 83 ~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~ 162 (213)
T 1iru_M 83 MTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVE 162 (213)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCC
T ss_pred CCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccC
Confidence 999999999999998765 799999999999975679999999999999999999999999999999999 8
Q ss_pred CCCCCHHHHhhc
Q 030788 159 KEGMTKEEAEVC 170 (171)
Q Consensus 159 ~~~~s~~ea~~l 170 (171)
+++||++||+++
T Consensus 163 ~~~~s~eea~~l 174 (213)
T 1iru_M 163 HVPLSLDRAMRL 174 (213)
T ss_dssp CCCCCHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 899999999986
No 22
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.4e-44 Score=281.22 Aligned_cols=166 Identities=19% Similarity=0.303 Sum_probs=156.2
Q ss_pred cccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHH-HH
Q 030788 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQ-HT 82 (171)
Q Consensus 4 ~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~ 82 (171)
|.|||++|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++||+|++||..+|++.++++++.+++. |+
T Consensus 20 QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~ 98 (250)
T 1ryp_B 20 QIDYALTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYK 98 (250)
T ss_dssp HHHHHHHHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHhHHHHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999998 4556678899999999999999999999999999999999999 99
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCC-----CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh
Q 030788 83 IQLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (171)
Q Consensus 83 ~~~~~~~~~~~la~~l~~~~~~~~-----~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 157 (171)
..++++++++.+++.++++++.++ |||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.
T Consensus 99 ~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~ 178 (250)
T 1ryp_B 99 RIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKR 178 (250)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHH
Confidence 999999999999888888876652 799999999999986799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhhc
Q 030788 158 WKEGMTKEEAEVC 170 (171)
Q Consensus 158 ~~~~~s~~ea~~l 170 (171)
|+++||++||+++
T Consensus 179 ~~~~ms~eea~~l 191 (250)
T 1ryp_B 179 WNDELELEDAIHI 191 (250)
T ss_dssp CCTTCCHHHHHHH
T ss_pred hccCCCHHHHHHH
Confidence 9999999999886
No 23
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.3e-44 Score=272.28 Aligned_cols=156 Identities=26% Similarity=0.416 Sum_probs=150.3
Q ss_pred CceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 030788 15 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVA 94 (171)
Q Consensus 15 g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (171)
|+|+|||+++||||||+|+|.+.+.++.+.+.+||++|++||+|+++|+.+|++.++++++.+++.|++.++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 78999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-CCceeeEEEEEEeCCCCcEEEEECCCCceeeeC-eEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 95 ANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQP-FAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 95 a~~l~~~~~~~~-~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
++++++++|.++ +||++++||||||++++|+||.+||+|++.+++ ++|+|+++++++++||+.|+++||++||+++
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~l 158 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKL 158 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999999875 799999999999986799999999999999999 9999999999999999999999999999986
No 24
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=8.5e-44 Score=281.19 Aligned_cols=164 Identities=26% Similarity=0.428 Sum_probs=150.6
Q ss_pred CCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcC
Q 030788 7 DFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLG 86 (171)
Q Consensus 7 ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 86 (171)
+++.++.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++||+|+++|..+|++.+.++++.+++.|+++++
T Consensus 67 ~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~ 146 (287)
T 3nzj_K 67 DCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREK 146 (287)
T ss_dssp ---------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 67889999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCC-CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHH
Q 030788 87 QPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKE 165 (171)
Q Consensus 87 ~~~~~~~la~~l~~~~~~~~-~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ 165 (171)
++++++.+++++++++|.++ .|+++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+++||++
T Consensus 147 ~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~e 226 (287)
T 3nzj_K 147 ERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVE 226 (287)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHH
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHH
Confidence 99999999999999999986 58999999999996689999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 030788 166 EAEVC 170 (171)
Q Consensus 166 ea~~l 170 (171)
||++|
T Consensus 227 EAi~l 231 (287)
T 3nzj_K 227 DALYL 231 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 25
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=2.4e-43 Score=266.77 Aligned_cols=155 Identities=54% Similarity=0.964 Sum_probs=150.5
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999777888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 96 NLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 96 ~~l~~~~~~~~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+.+++.+|.+++||++++|+||||++++|+||.+||+|++.+++++++|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l 155 (205)
T 1iru_H 81 SLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQF 155 (205)
T ss_dssp HHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhcCcCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999999999999999999999867899999999999999999999999999999999999999999999986
No 26
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=5.4e-43 Score=267.96 Aligned_cols=163 Identities=22% Similarity=0.292 Sum_probs=155.5
Q ss_pred CCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcC-
Q 030788 8 FNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLG- 86 (171)
Q Consensus 8 a~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~- 86 (171)
..+.+++|+|+|||+++||||||+|+|.+.+.++.+.+.+||++|++|++|+++|..+|++.+.++++.+++.|+++++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (222)
T 1ryp_M 2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHND 81 (222)
T ss_dssp CCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3567899999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCC-CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhh--------
Q 030788 87 QPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA-------- 157 (171)
Q Consensus 87 ~~~~~~~la~~l~~~~~~~~-~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~-------- 157 (171)
++++++.+|+.+++.++.++ +||++++||||||++++|+||.+||.|++.+++++|+|+++++++++||+.
T Consensus 82 ~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~ 161 (222)
T 1ryp_M 82 KKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYE 161 (222)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccc
Confidence 99999999999999998775 699999999999985679999999999999999999999999999999998
Q ss_pred ---------cCCCCCHHHHhhc
Q 030788 158 ---------WKEGMTKEEAEVC 170 (171)
Q Consensus 158 ---------~~~~~s~~ea~~l 170 (171)
|+++||++||++|
T Consensus 162 ~~~~~~~~~~~~~~s~eeA~~l 183 (222)
T 1ryp_M 162 PGTNGKVKKPLKYLSVEEVIKL 183 (222)
T ss_dssp TTSTTCSBCCCCCCCHHHHHHH
T ss_pred cccccccccCCCCCCHHHHHHH
Confidence 8899999999986
No 27
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=3e-44 Score=281.22 Aligned_cols=163 Identities=15% Similarity=0.213 Sum_probs=155.8
Q ss_pred cccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 030788 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (171)
Q Consensus 4 ~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (171)
|.|||++|+++|+|+|||+++||||||+|+|.+.++. .+.+||++|++||+|+++|+.+|++.++++++.+++.|++
T Consensus 21 QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~---~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~ 97 (263)
T 1iru_F 21 QIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRF 97 (263)
T ss_dssp HHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc---cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999864 3679999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcC-----CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhc
Q 030788 84 QLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (171)
Q Consensus 84 ~~~~~~~~~~la~~l~~~~~~~-----~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 158 (171)
.++++++++.+++.+++++|.+ .|||++++||||||+ ++|+||.+||+|++.+++++|+|+++++++++||+.|
T Consensus 98 ~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~ 176 (263)
T 1iru_F 98 VFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHM 176 (263)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHh
Confidence 9999999999999999999854 479999999999998 7999999999999999999999999999999999999
Q ss_pred CC--CCCHHHHhhc
Q 030788 159 KE--GMTKEEAEVC 170 (171)
Q Consensus 159 ~~--~~s~~ea~~l 170 (171)
++ +||++||+++
T Consensus 177 ~~~~~ms~eea~~l 190 (263)
T 1iru_F 177 SEFMECNLNELVKH 190 (263)
T ss_dssp HHHTTCCHHHHHHH
T ss_pred cccCCCCHHHHHHH
Confidence 98 9999999986
No 28
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=4.2e-43 Score=264.89 Aligned_cols=154 Identities=27% Similarity=0.433 Sum_probs=149.1
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++|+++|..+|++.++++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-CCceeeEEEEEEeCCCCcEEEEECCCCceeeeC-eEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 96 NLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQP-FAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 96 ~~l~~~~~~~~-~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+.+++.+|.++ +||++++|+||||+ +||+||.+||+|++.+++ ++|+|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l 156 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVEL 156 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHH
Confidence 99999999876 79999999999998 689999999999999999 9999999999999999999999999999986
No 29
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=3.2e-43 Score=264.72 Aligned_cols=156 Identities=22% Similarity=0.393 Sum_probs=149.7
Q ss_pred CceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 030788 15 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVA 94 (171)
Q Consensus 15 g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (171)
++|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.++++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC---CCceeeEEEEEEeC-CCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 95 ANLVRLLSYNNK---NFLQTGMIVGGWDK-YEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 95 a~~l~~~~~~~~---~p~~v~~liaG~d~-~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
++.+++.+|.++ +||++++|+||||+ +++|+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 81 a~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l 160 (198)
T 1ryp_K 81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDL 160 (198)
T ss_dssp HHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 999999998864 49999999999996 47999999999999999999999999999999999999999999999986
No 30
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=5e-43 Score=269.96 Aligned_cols=154 Identities=27% Similarity=0.510 Sum_probs=150.4
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
||+|||+++||||||+|+|.+.+.++.+++.+||++|++||+|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 68999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 96 NLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 96 ~~l~~~~~~~~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+.+++.++.+++||++++||||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||++|
T Consensus 81 ~~l~~~l~~~~~p~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (234)
T 3unf_H 81 RILRQTLFRYQGHVGASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQEL 154 (234)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHHhcCCCccEEEEEEEEeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHH
Confidence 9999999999999999999999998 6999999999999999999999999999999999999999999999986
No 31
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1.7e-43 Score=270.09 Aligned_cols=161 Identities=22% Similarity=0.324 Sum_probs=154.6
Q ss_pred CCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH-HcCC
Q 030788 9 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI-QLGQ 87 (171)
Q Consensus 9 ~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~ 87 (171)
++|+++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++ .+++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 589999999999999999999999999998888888999999999999999999999999999999999999998 9999
Q ss_pred CCCHHHHHHHHHHHHhcC---CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCC--CC
Q 030788 88 PATVKVAANLVRLLSYNN---KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKE--GM 162 (171)
Q Consensus 88 ~~~~~~la~~l~~~~~~~---~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~ 162 (171)
+++++.+++.+++.++.+ .+||++++|+||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.|++ +|
T Consensus 82 ~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~m 160 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVL 160 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCC
T ss_pred CCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCC
Confidence 999999999999998875 379999999999998 699999999999999999999999999999999999999 99
Q ss_pred CHHHHhhc
Q 030788 163 TKEEAEVC 170 (171)
Q Consensus 163 s~~ea~~l 170 (171)
|++||++|
T Consensus 161 t~eea~~l 168 (219)
T 1iru_N 161 SQTEARDL 168 (219)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99999986
No 32
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1.8e-43 Score=272.36 Aligned_cols=162 Identities=20% Similarity=0.284 Sum_probs=155.4
Q ss_pred CCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH-----
Q 030788 9 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI----- 83 (171)
Q Consensus 9 ~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~----- 83 (171)
++|+++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 589999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCC---CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCC
Q 030788 84 QLGQPATVKVAANLVRLLSYNNK---NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKE 160 (171)
Q Consensus 84 ~~~~~~~~~~la~~l~~~~~~~~---~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~ 160 (171)
.++++++++.+++.+++.++.++ +||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|++
T Consensus 82 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 161 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDR 161 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSS
T ss_pred hcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhcc
Confidence 89999999999999999998764 799999999999986699999999999999999999999999999999999999
Q ss_pred -----CCCHHHHhhc
Q 030788 161 -----GMTKEEAEVC 170 (171)
Q Consensus 161 -----~~s~~ea~~l 170 (171)
+||++||+++
T Consensus 162 ~~~~~~ms~eea~~l 176 (233)
T 1ryp_N 162 ESDIPKTTVQVAEEA 176 (233)
T ss_dssp GGGGGGCCHHHHHHH
T ss_pred ccccCCCCHHHHHHH
Confidence 9999999886
No 33
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=1.4e-42 Score=263.92 Aligned_cols=155 Identities=26% Similarity=0.437 Sum_probs=149.2
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999998788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC-CceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 96 NLVRLLSYNNKN-FLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 96 ~~l~~~~~~~~~-p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+++++.+|.+++ ||++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 156 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL 156 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 999999999864 899999999999657999999999999999999999999999999999999999999999986
No 34
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=1.6e-42 Score=265.41 Aligned_cols=154 Identities=27% Similarity=0.472 Sum_probs=150.3
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
+|+|||+++||||||+|+|.+.+.++.+.+.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 96 NLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 96 ~~l~~~~~~~~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+.+++.++.+++||++++||||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~l~~~~~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (222)
T 1ryp_I 81 QMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKL 154 (222)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHhhcCCCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHH
Confidence 9999999999999999999999998 6899999999999999999999999999999999999999999999986
No 35
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=9.3e-43 Score=276.09 Aligned_cols=163 Identities=23% Similarity=0.264 Sum_probs=154.6
Q ss_pred CCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 030788 8 FNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQ 87 (171)
Q Consensus 8 a~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (171)
|++|+++|+|+|||+++||||||+|+|.+.+.++.+.+.+||++|++||+|+++|..+|++.++++++.+++.|++.+++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 78999999999999999999999999999988888889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcC----CCCceeeEEEEEEeCCCC-----cEEEEECCCCceeee--CeEEeccchHHHHHHhhh
Q 030788 88 PATVKVAANLVRLLSYNN----KNFLQTGMIVGGWDKYEG-----GKIYGVPLGGTIIEQ--PFAIGGSGSSYLYGFFDQ 156 (171)
Q Consensus 88 ~~~~~~la~~l~~~~~~~----~~p~~v~~liaG~d~~~~-----~~Ly~vd~~G~~~~~--~~~a~G~g~~~~~~~Le~ 156 (171)
+++++.+++.+++++|.+ .+||++++||||||++++ |+||.+||+|++.++ +++|+|+|+++++++||+
T Consensus 138 ~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~ 217 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKK 217 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHH
Confidence 999999999999999875 379999999999998556 999999999999998 999999999999999999
Q ss_pred hcCCCCCHHHHhhc
Q 030788 157 AWKEGMTKEEAEVC 170 (171)
Q Consensus 157 ~~~~~~s~~ea~~l 170 (171)
.|+++||++||+++
T Consensus 218 ~y~~~ms~eEAi~l 231 (294)
T 1q5r_H 218 IYSPDSDEETALRA 231 (294)
T ss_dssp HCCSSCCHHHHHHH
T ss_pred hccCCCCHHHHHHH
Confidence 99999999999986
No 36
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=1.9e-42 Score=261.70 Aligned_cols=154 Identities=27% Similarity=0.415 Sum_probs=148.9
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 96 NLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 96 ~~l~~~~~~~~-~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+.+++.+|.+| +|+++++|+||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l 155 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDL 155 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHH
Confidence 99999999986 58999999999998 7999999999999999999999999999999999999999999999986
No 37
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=2.7e-42 Score=261.05 Aligned_cols=161 Identities=20% Similarity=0.295 Sum_probs=151.6
Q ss_pred CCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 030788 10 APHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPA 89 (171)
Q Consensus 10 ~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (171)
..+.+|+|+|||+++||||||+|+|.+.++++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.+++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (205)
T 1iru_J 3 IMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQI 82 (205)
T ss_dssp CTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred cccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 34689999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCC-CCceeeEEEEEEeC-CCCcEEEEECCCCceeee-CeEEeccchHHHHHHhhhhcCCCCCHHH
Q 030788 90 TVKVAANLVRLLSYNNK-NFLQTGMIVGGWDK-YEGGKIYGVPLGGTIIEQ-PFAIGGSGSSYLYGFFDQAWKEGMTKEE 166 (171)
Q Consensus 90 ~~~~la~~l~~~~~~~~-~p~~v~~liaG~d~-~~~~~Ly~vd~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~~e 166 (171)
+++.+++.+++.++.++ .||++++|+||||+ +++|+||.+||.|++.++ .++|+|+|+++++++||+.|+++||++|
T Consensus 83 ~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ee 162 (205)
T 1iru_J 83 KPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDH 162 (205)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHH
Confidence 99999999999997765 59999999999996 479999999999998664 6799999999999999999999999999
Q ss_pred Hhhc
Q 030788 167 AEVC 170 (171)
Q Consensus 167 a~~l 170 (171)
|+++
T Consensus 163 a~~l 166 (205)
T 1iru_J 163 LFET 166 (205)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9986
No 38
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=6.2e-42 Score=258.86 Aligned_cols=160 Identities=21% Similarity=0.281 Sum_probs=150.9
Q ss_pred CCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 030788 10 APHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPA 89 (171)
Q Consensus 10 ~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (171)
..+.+|+|+|||+++||||||+|+|.+.++++.+++.+||++|+ |++|+++|..+|++.+.++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 81 (204)
T 1ryp_J 3 PSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAI 81 (204)
T ss_dssp GGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 35689999999999999999999999999998888899999999 99999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCC-CCceeeEEEEEEeC-CCCcEEEEECCCCceeee-CeEEeccchHHHHHHhhhhcCCCCCHHH
Q 030788 90 TVKVAANLVRLLSYNNK-NFLQTGMIVGGWDK-YEGGKIYGVPLGGTIIEQ-PFAIGGSGSSYLYGFFDQAWKEGMTKEE 166 (171)
Q Consensus 90 ~~~~la~~l~~~~~~~~-~p~~v~~liaG~d~-~~~~~Ly~vd~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~~e 166 (171)
+++.+++.+++.++.++ .||++++|+||||+ +++|+||.+||.|++.++ .++|+|+|+++++++||+.|+++||++|
T Consensus 82 ~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ee 161 (204)
T 1ryp_J 82 EPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPED 161 (204)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHH
Confidence 99999999999997764 58999999999996 578999999999998654 7799999999999999999999999999
Q ss_pred Hhhc
Q 030788 167 AEVC 170 (171)
Q Consensus 167 a~~l 170 (171)
|+++
T Consensus 162 a~~l 165 (204)
T 1ryp_J 162 LFET 165 (204)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9986
No 39
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=6.3e-42 Score=263.92 Aligned_cols=154 Identities=30% Similarity=0.579 Sum_probs=150.1
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 96 NLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 96 ~~l~~~~~~~~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+.+++.++.+++||++++|+||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||+++
T Consensus 81 ~~l~~~l~~~~~~~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (234)
T 1iru_I 81 RMLKQMLFRYRGYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNL 154 (234)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTH
T ss_pred HHHHHHHHhcCCCCceeEEEEEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHH
Confidence 9999999999999999999999998 7899999999999999999999999999999999999999999999986
No 40
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=2e-42 Score=273.98 Aligned_cols=164 Identities=21% Similarity=0.254 Sum_probs=141.3
Q ss_pred cCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHc
Q 030788 6 EDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQL 85 (171)
Q Consensus 6 ~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 85 (171)
+||++ +++|+|+|||+++||||||+|+|.+.+.++.+.+.+||++|++|++|+++|..+|++.++++++.+++.|++.+
T Consensus 49 ~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~ 127 (291)
T 2jay_A 49 GGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLE 127 (291)
T ss_dssp ----------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhc
Confidence 68999 99999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCC----CCceeeEEEEEEeCCCC-----cEEEEECCCCcee--eeCeEEeccchHHHHHHh
Q 030788 86 GQPATVKVAANLVRLLSYNNK----NFLQTGMIVGGWDKYEG-----GKIYGVPLGGTII--EQPFAIGGSGSSYLYGFF 154 (171)
Q Consensus 86 ~~~~~~~~la~~l~~~~~~~~----~p~~v~~liaG~d~~~~-----~~Ly~vd~~G~~~--~~~~~a~G~g~~~~~~~L 154 (171)
+++++++.+++.+++++|.++ +||+|++||||||++++ |+||.+||+|++. +++++|+|+|+++++++|
T Consensus 128 ~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~L 207 (291)
T 2jay_A 128 GVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSM 207 (291)
T ss_dssp SSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHH
Confidence 999999999999999999874 58999999999998555 9999999999988 799999999999999999
Q ss_pred hhhcCCCCCHHHHhhc
Q 030788 155 DQAWKEGMTKEEAEVC 170 (171)
Q Consensus 155 e~~~~~~~s~~ea~~l 170 (171)
|+.|+++||++||+++
T Consensus 208 e~~~~~~ms~eEAi~l 223 (291)
T 2jay_A 208 KKLYSQVTDGDSGLRV 223 (291)
T ss_dssp HHHGGGCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHH
Confidence 9999999999999876
No 41
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.2e-42 Score=272.47 Aligned_cols=166 Identities=20% Similarity=0.282 Sum_probs=156.4
Q ss_pred ccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHH-
Q 030788 5 MEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI- 83 (171)
Q Consensus 5 ~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~- 83 (171)
.+-+++++++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++||+|+++|..+|++.++++++.+++.|++
T Consensus 31 ~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~ 110 (266)
T 1g0u_M 31 MVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYD 110 (266)
T ss_dssp ---CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhc
Confidence 3567899999999999999999999999999998888888999999999999999999999999999999999999998
Q ss_pred ----HcCCCCCHHHHHHHHHHHHhcCC---CCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhh
Q 030788 84 ----QLGQPATVKVAANLVRLLSYNNK---NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQ 156 (171)
Q Consensus 84 ----~~~~~~~~~~la~~l~~~~~~~~---~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~ 156 (171)
.++++++++.+++.+++.++.++ +||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+
T Consensus 111 ~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~ 190 (266)
T 1g0u_M 111 NPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRK 190 (266)
T ss_dssp CTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTT
T ss_pred cchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHH
Confidence 89999999999999999998764 79999999999998569999999999999999999999999999999999
Q ss_pred hcCC-----CCCHHHHhhc
Q 030788 157 AWKE-----GMTKEEAEVC 170 (171)
Q Consensus 157 ~~~~-----~~s~~ea~~l 170 (171)
.|++ +||++||++|
T Consensus 191 ~~~~~~~~~~ms~eeA~~l 209 (266)
T 1g0u_M 191 VVDRESDIPKTTVQVAEEA 209 (266)
T ss_dssp TCSSGGGGGGCCHHHHHHH
T ss_pred hhcccccCCCCCHHHHHHH
Confidence 9999 9999999886
No 42
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=6.6e-42 Score=258.18 Aligned_cols=156 Identities=19% Similarity=0.319 Sum_probs=146.8
Q ss_pred CceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 030788 15 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVA 94 (171)
Q Consensus 15 g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (171)
++|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.++++++.+++.|++.++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 47999999999999999999999878888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hc-C-CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 95 ANLVRLLS-YN-N-KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 95 a~~l~~~~-~~-~-~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
++++++.+ +. + ++||++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 81 a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 159 (201)
T 1iru_K 81 ANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVEL 159 (201)
T ss_dssp HHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHH
Confidence 99998754 32 2 36999999999999867999999999999999999999999999999999999999999999986
No 43
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=9.5e-43 Score=272.12 Aligned_cols=160 Identities=16% Similarity=0.192 Sum_probs=148.4
Q ss_pred ccccCCCCCCccCceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 030788 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (171)
Q Consensus 3 ~~~~ya~~a~~~g~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (171)
.|.|||++|+++|+|+|||+++||||||+|+| +.+.+||++|++||+|+++|+.+|++.++++++.+++.|+
T Consensus 15 ~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 86 (259)
T 1q5q_A 15 DRSELARKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRG 86 (259)
T ss_dssp HHHHHHHHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999998 2567999999999999999999999999999999999999
Q ss_pred HHcCC-CCCHHHHHHHHHH-HHhc---CCCCceeeEEEEEEe--C-CCCcEEEEECCCCcee-eeCeEEeccchHHHHHH
Q 030788 83 IQLGQ-PATVKVAANLVRL-LSYN---NKNFLQTGMIVGGWD--K-YEGGKIYGVPLGGTII-EQPFAIGGSGSSYLYGF 153 (171)
Q Consensus 83 ~~~~~-~~~~~~la~~l~~-~~~~---~~~p~~v~~liaG~d--~-~~~~~Ly~vd~~G~~~-~~~~~a~G~g~~~~~~~ 153 (171)
+.++. +++++.+++.+++ +.|. ..+||+|++|||||| + +++|+||.+||+|++. +++++|+|++++.++++
T Consensus 87 ~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~ 166 (259)
T 1q5q_A 87 YSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATA 166 (259)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHH
T ss_pred HHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHH
Confidence 99884 9999999999999 4332 358999999999999 2 4799999999999999 78999999999999999
Q ss_pred hhhhcCCCCCHHHHhhc
Q 030788 154 FDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 154 Le~~~~~~~s~~ea~~l 170 (171)
||+.|+++||++||++|
T Consensus 167 Le~~~~~~ms~eea~~l 183 (259)
T 1q5q_A 167 MRESYRADLDLEAAVGI 183 (259)
T ss_dssp HHHHCCTTCCHHHHHHH
T ss_pred HHhhccCCCCHHHHHHH
Confidence 99999999999999986
No 44
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=2.3e-41 Score=260.92 Aligned_cols=155 Identities=24% Similarity=0.285 Sum_probs=148.5
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
+|+|||+++||||||+|+|.+.+.++.+.+.+||++|+++++|++||..+|++.++++++.+++.|++.++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC----CCCceeeEEEEEEeCCCC-----cEEEEECCCCceeee--CeEEeccchHHHHHHhhhhcCCCCCH
Q 030788 96 NLVRLLSYNN----KNFLQTGMIVGGWDKYEG-----GKIYGVPLGGTIIEQ--PFAIGGSGSSYLYGFFDQAWKEGMTK 164 (171)
Q Consensus 96 ~~l~~~~~~~----~~p~~v~~liaG~d~~~~-----~~Ly~vd~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~s~ 164 (171)
+.+++++|.+ .+||++++||||||++++ |+||.+||+|++.++ +++|+|+|+++++++||+.|+++||+
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 160 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDE 160 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCH
Confidence 9999999886 479999999999998557 999999999999999 99999999999999999999999999
Q ss_pred HHHhhc
Q 030788 165 EEAEVC 170 (171)
Q Consensus 165 ~ea~~l 170 (171)
+||+++
T Consensus 161 eeA~~l 166 (235)
T 1q5q_H 161 ETALRA 166 (235)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999986
No 45
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=3.2e-41 Score=253.99 Aligned_cols=153 Identities=47% Similarity=0.819 Sum_probs=145.6
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEecCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (171)
||+|||+++||||||+|+|.+.+.++.+.+.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCceeeEEEEEEeCCCCcEEEEECCCCceeee-CeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 96 NLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQ-PFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 96 ~~l~~~~~~~~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
+.+++.+|.+++||++++||||||++++|+||. |+|++.++ .++++|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~l~~~~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~l 154 (199)
T 3unf_N 81 NVVKNISYKYREDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRF 154 (199)
T ss_dssp HHHHHHHHHTTTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 999999999999999999999999867899999 99987655 56667999999999999999999999999986
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=1.6e-34 Score=214.46 Aligned_cols=146 Identities=23% Similarity=0.220 Sum_probs=127.8
Q ss_pred CccCceEEEEEeCCeEEEeEeCCcccCce-eeecCCCceEEe-cCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 030788 12 HSMGTTIIGVTYNGGVVLGADSRTSTGVY-VANRASDKITQL-TDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPA 89 (171)
Q Consensus 12 ~~~g~t~vgi~~~dgVvla~d~~~~~~~~-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (171)
..+|+|+|||+++||||||+|+|.+.+.+ +.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+ + .
T Consensus 2 ~~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~ 76 (180)
T 2z3b_A 2 SFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--N 76 (180)
T ss_dssp CBCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--C
T ss_pred CCCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--C
Confidence 36799999999999999999999999866 788999999999 999999999999999999999999999987 3 2
Q ss_pred CHHHHHHHHHHHHhcC--CCCceeeEEEEEEeCCCCcEEEEECCCCceee--eCeEEeccchHHHHHHhhhhcCC---CC
Q 030788 90 TVKVAANLVRLLSYNN--KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIE--QPFAIGGSGSSYLYGFFDQAWKE---GM 162 (171)
Q Consensus 90 ~~~~la~~l~~~~~~~--~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~--~~~~a~G~g~~~~~~~Le~~~~~---~~ 162 (171)
.++.++ .+++.++.+ .|||++++||| | +|+||.+||.|++.+ ++++|+|+|+++++++||+.|++ +|
T Consensus 77 ~~~~~~-~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~m 150 (180)
T 2z3b_A 77 LKRAAV-ELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESM 150 (180)
T ss_dssp HHHHHH-HHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGC
T ss_pred hHHHHH-HHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCC
Confidence 333333 345555443 47999999999 3 699999999999998 59999999999999999999998 99
Q ss_pred CHHHHh
Q 030788 163 TKEEAE 168 (171)
Q Consensus 163 s~~ea~ 168 (171)
|++|++
T Consensus 151 t~eel~ 156 (180)
T 2z3b_A 151 SASEIA 156 (180)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 999965
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=5.6e-34 Score=209.84 Aligned_cols=142 Identities=25% Similarity=0.296 Sum_probs=126.6
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEe-cCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQL-TDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVA 94 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (171)
+|+|||+++||||||+|+|.+.+.++.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999999888888899999999 99999999999999999999999999988754 26666
Q ss_pred HHHHHHHHhcC--CCCceeeEEEEEEeCCCCcEEEEECCCCceeeeC--eEEeccchHHHHHHhhhhcC-CCCCHHHHh
Q 030788 95 ANLVRLLSYNN--KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQP--FAIGGSGSSYLYGFFDQAWK-EGMTKEEAE 168 (171)
Q Consensus 95 a~~l~~~~~~~--~~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~--~~a~G~g~~~~~~~Le~~~~-~~~s~~ea~ 168 (171)
++..+ .++.+ .+||++++|+| | +|+||.+||+|++.+++ +.|+|+|+++++++||+.|+ ++||++|++
T Consensus 76 ~~l~~-~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~~~l~ 148 (171)
T 1m4y_A 76 VELAK-DWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSAREIV 148 (171)
T ss_dssp HHHHH-HHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHH-HHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCHHHHH
Confidence 66655 44444 36799999888 4 79999999999999987 99999999999999999999 999987754
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=1.5e-33 Score=208.11 Aligned_cols=142 Identities=22% Similarity=0.202 Sum_probs=125.7
Q ss_pred ceEEEEEeCCeEEEeEeCCcccCceeeecCCCceEEe-cCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 030788 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQL-TDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVA 94 (171)
Q Consensus 16 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (171)
+|+|||+++||||||+|+|.+.+.++.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+. ++...
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999999988888999999999 9999999999999999999999999999875 34445
Q ss_pred HHHHHHHHhcCC--CCceeeEEEEEEeCCCCcEEEEECCCCceeeeC---eEEeccchHHHHHHhhhhcC-CCCCHHHHh
Q 030788 95 ANLVRLLSYNNK--NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQP---FAIGGSGSSYLYGFFDQAWK-EGMTKEEAE 168 (171)
Q Consensus 95 a~~l~~~~~~~~--~p~~v~~liaG~d~~~~~~Ly~vd~~G~~~~~~---~~a~G~g~~~~~~~Le~~~~-~~~s~~ea~ 168 (171)
+..+++.++.++ ||+ +++++|+| +|+||.+||+|++.+++ +.|+|+|+++++++||+.|+ ++||.+|.+
T Consensus 75 ~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~~l~ 149 (174)
T 1g3k_A 75 AVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIV 149 (174)
T ss_dssp HHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHHHHH
Confidence 566666666553 454 57788887 69999999999999988 99999999999999999999 999987654
No 49
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=47.22 E-value=4.9 Score=31.40 Aligned_cols=46 Identities=7% Similarity=-0.070 Sum_probs=36.5
Q ss_pred cEEEEECCCCceee-eCeEEeccchHHHHHHhhhhcCCCCCHHHHhh
Q 030788 124 GKIYGVPLGGTIIE-QPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEV 169 (171)
Q Consensus 124 ~~Ly~vd~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~ 169 (171)
|..|.||+.|.+.. +..+-.+...+.+...|++.-..+|++.|+++
T Consensus 103 r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~~~~~~I~ 149 (322)
T 4eo3_A 103 RSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHIE 149 (322)
T ss_dssp CEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchhhhHHHHHHH
Confidence 67899999999865 44456677888888888888777888888775
No 50
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=38.95 E-value=46 Score=22.22 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=37.4
Q ss_pred EeCCCCcE--EE-EECCCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 118 WDKYEGGK--IY-GVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 118 ~d~~~~~~--Ly-~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
.++..|-. || .+|+.|.+....|.+.|.+...|-.-+=..+-.+.|++||.++
T Consensus 34 ~np~CGD~i~l~l~v~~~~~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i 89 (129)
T 3lvl_A 34 GAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAI 89 (129)
T ss_dssp ECTTTCCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTC
T ss_pred cCCCCCCEEEEEEEECCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 35544443 44 4676688888999999988777766554455568999999875
No 51
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=26.76 E-value=92 Score=21.57 Aligned_cols=53 Identities=17% Similarity=0.034 Sum_probs=37.8
Q ss_pred EeCCCCcE--EE-EEC-CCCceeeeCeEEeccchHHHHHHhhhhcCCCCCHHHHhhc
Q 030788 118 WDKYEGGK--IY-GVP-LGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEVC 170 (171)
Q Consensus 118 ~d~~~~~~--Ly-~vd-~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 170 (171)
.++..|-. || .+| ..|.+....|.+.|.+...|-.-+=..+-.+.|++||.++
T Consensus 32 ~np~CGD~i~l~lkvd~~~g~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i 88 (157)
T 2z7e_A 32 GNPACGAAMLFTIKVNPENDVIEDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNL 88 (157)
T ss_dssp EETTTTEEEEEEEEECTTTCBEEEEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHC
T ss_pred CCCCCCCEEEEEEEEecCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 44444443 55 367 4678888999999988777776555555569999999875
No 52
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=23.13 E-value=55 Score=17.38 Aligned_cols=20 Identities=5% Similarity=-0.218 Sum_probs=14.8
Q ss_pred cCCCCCHHHHHHHHHHHHhc
Q 030788 85 LGQPATVKVAANLVRLLSYN 104 (171)
Q Consensus 85 ~~~~~~~~~la~~l~~~~~~ 104 (171)
-|..-+++.++++.+.+-|.
T Consensus 12 Pg~~aspEela~Y~~~Lr~Y 31 (41)
T 2l60_A 12 ELKKLSPEELNRYYASLRHY 31 (41)
T ss_dssp HHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 35567899999988876554
No 53
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=22.84 E-value=76 Score=20.36 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=13.8
Q ss_pred CCcEEEEECCCCceeee
Q 030788 122 EGGKIYGVPLGGTIIEQ 138 (171)
Q Consensus 122 ~~~~Ly~vd~~G~~~~~ 138 (171)
.+..+|..||.|+..+.
T Consensus 132 ~g~~~~~~DPdG~~iel 148 (156)
T 3kol_A 132 TGRGVYFYDPDGFMIEI 148 (156)
T ss_dssp CCEEEEEECTTSCEEEE
T ss_pred CccEEEEECCCCCEEEE
Confidence 45689999999998774
No 54
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=22.72 E-value=46 Score=19.74 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=18.7
Q ss_pred HHHHHHhhhhcCC-CCCHHHHhhc
Q 030788 148 SYLYGFFDQAWKE-GMTKEEAEVC 170 (171)
Q Consensus 148 ~~~~~~Le~~~~~-~~s~~ea~~l 170 (171)
+.|+=.|..+|++ +.|+-|.+++
T Consensus 20 PsAYyLL~~~ykkg~FsL~ELiKF 43 (75)
T 2kxe_A 20 PSAYYLLVGHFNEGKFSLIELIKF 43 (75)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred chHHHHHHHHhhcccccHHHHHHH
Confidence 4567788899988 8999998874
No 55
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}
Probab=21.91 E-value=1.1e+02 Score=19.96 Aligned_cols=21 Identities=14% Similarity=-0.156 Sum_probs=15.4
Q ss_pred EeCCCCcEEEEECCCCceeee
Q 030788 118 WDKYEGGKIYGVPLGGTIIEQ 138 (171)
Q Consensus 118 ~d~~~~~~Ly~vd~~G~~~~~ 138 (171)
.+...+-..|..||.|+..+.
T Consensus 128 ~~~~~g~~~~f~DPdGn~iel 148 (155)
T 4g6x_A 128 TDMGPVVTAILDDTCGNLIQL 148 (155)
T ss_dssp EECSSCEEEEEECSSSCEEEE
T ss_pred EEcCCeEEEEEECCCCCEEEE
Confidence 444456678889999998763
Done!