BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030789
(171 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359495735|ref|XP_003635074.1| PREDICTED: uncharacterized protein LOC100855146 [Vitis vinifera]
Length = 251
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/166 (61%), Positives = 119/166 (71%), Gaps = 6/166 (3%)
Query: 10 FSPPPSSMLSRT--QFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVE----E 63
FSPP + L + +FT KP+ L SKK L A A +NGAG S A TVE E
Sbjct: 6 FSPPIPTHLPTLSPKPNFTLKPSLFLRSKKHQLLLLSAKATENGAGTSTSATTVEPEKAE 65
Query: 64 PKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEAR 123
K EA+ ++ NGA A +V V KFED KWV GTWDLKQF+ +G+T+WDAVIDAE R
Sbjct: 66 EKAPEAAVLDSQPNGAAAAGDVVLVTKFEDLKWVGGTWDLKQFETDGKTNWDAVIDAEVR 125
Query: 124 RRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
RRKWLE++PESSSNDDPV+FDTSI+PWWAWIKRFHLPEAELLNG A
Sbjct: 126 RRKWLEDNPESSSNDDPVVFDTSIIPWWAWIKRFHLPEAELLNGRA 171
>gi|255566759|ref|XP_002524363.1| transcription factor, putative [Ricinus communis]
gi|223536324|gb|EEF37974.1| transcription factor, putative [Ricinus communis]
Length = 259
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/179 (59%), Positives = 126/179 (70%), Gaps = 14/179 (7%)
Query: 4 SIDLLSFSPPPSSMLSRTQFSFTH---KPTFLLSSKKESF-FTLRASAADNGAGVSAPAV 59
SI + FSPPP+ L R+ S H KPT L+ F F+ ++ DNGAG+SA A
Sbjct: 2 SISMALFSPPPTQFL-RSLSSKPHLLTKPTSFLTPINPPFLFSAPKASTDNGAGISAAAA 60
Query: 60 TVEEPKVRE---------ASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNG 110
VEEPK E A E SNGAV+ EVK +KF DP+W+ GTWDLKQFQK+G
Sbjct: 61 AVEEPKEAEPKAAEPSPAAVESSLGSNGAVKDAEVKLESKFVDPRWIGGTWDLKQFQKDG 120
Query: 111 QTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
TDWD+VIDAE RRRKWLE++PESS+NDDPV+FDTSI+PWWAW+KRFHLPEAELLNG A
Sbjct: 121 STDWDSVIDAEVRRRKWLESNPESSTNDDPVVFDTSIIPWWAWMKRFHLPEAELLNGRA 179
>gi|224137948|ref|XP_002326480.1| light harvesting-like protein 3 [Populus trichocarpa]
gi|118482026|gb|ABK92944.1| unknown [Populus trichocarpa]
gi|222833802|gb|EEE72279.1| light harvesting-like protein 3 [Populus trichocarpa]
Length = 257
Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 107/182 (58%), Positives = 128/182 (70%), Gaps = 25/182 (13%)
Query: 8 LSFSPPPSSMLSRTQFSFT------HKPTFLLSSKKESFF--TLRASAADNGAGVSAPAV 59
+S PPP L+R SF+ KPT L F T +AS D GAGVSA +
Sbjct: 1 MSLFPPP---LTRLPLSFSSKHHIIFKPTLSLRPTSPPFLLSTSKASTDDGGAGVSASSA 57
Query: 60 TVEEPKVREASEGPTES--------NGAVEAP----EVKAVNKFEDPKWVNGTWDLKQFQ 107
TVEEPK+ + + +ES NGAV AP EV+ V+KFEDP+W++GTWDLKQF+
Sbjct: 58 TVEEPKLEQKAPDSSESVPVAEKNSNGAV-APGGGVEVE-VSKFEDPRWISGTWDLKQFE 115
Query: 108 KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG 167
K+G+TDWDAVIDAE RRRKWLE +PESSSNDDPV+FDTSI+PWWAW+KRFHLPEAELLNG
Sbjct: 116 KDGKTDWDAVIDAEVRRRKWLEGNPESSSNDDPVVFDTSIIPWWAWMKRFHLPEAELLNG 175
Query: 168 AA 169
A
Sbjct: 176 RA 177
>gi|224126625|ref|XP_002329601.1| light harvesting-like protein 3 [Populus trichocarpa]
gi|222870310|gb|EEF07441.1| light harvesting-like protein 3 [Populus trichocarpa]
Length = 258
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 102/181 (56%), Positives = 126/181 (69%), Gaps = 15/181 (8%)
Query: 1 MSTSIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKESFF--TLRASAADNGAGVSAPA 58
MS S+ L S PP + ++ FT+K T L F T +AS + GAGVSA A
Sbjct: 1 MSISMSLFS---PPLTRFPPSKPHFTYKSTLSLGPTNRPFLLSTPKASTDNGGAGVSASA 57
Query: 59 VTVEEPKVREASEGPTES--------NGAVEA--PEVKAVNKFEDPKWVNGTWDLKQFQK 108
TVEEPK+ + + ++S NGAV A E V+KF DP+W++GTWDLKQFQK
Sbjct: 58 ATVEEPKLEQKTPESSDSVPVAKNSSNGAVAAGGEEKVEVSKFGDPRWISGTWDLKQFQK 117
Query: 109 NGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGA 168
+G+TDWDAVIDAEARRRKWL+ +PESSSN+DPV+FDTSI+PWW W+KRFHLPEAELLNG
Sbjct: 118 DGKTDWDAVIDAEARRRKWLQCNPESSSNNDPVVFDTSIIPWWTWMKRFHLPEAELLNGR 177
Query: 169 A 169
A
Sbjct: 178 A 178
>gi|356563395|ref|XP_003549949.1| PREDICTED: uncharacterized protein LOC100780555 [Glycine max]
Length = 264
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/182 (56%), Positives = 125/182 (68%), Gaps = 16/182 (8%)
Query: 2 STSIDLLSFSPP------PSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVS 55
S S + SFSPP PSS S+ + + + F L SK +F L+A+AA+NG G +
Sbjct: 5 SMSTTMASFSPPTHFSAAPSS--SKLRLVYKNNNFFSLRSKSLAFSPLKAAAAENGVGTA 62
Query: 56 A-----PAVTVEE---PKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQ 107
AV+V E P V + + AVE+ EVK F DP+WV+GTWDLKQFQ
Sbjct: 63 VEPPPEQAVSVPELPPPAVGNSVGTNGSAAVAVESEEVKVKTGFVDPRWVSGTWDLKQFQ 122
Query: 108 KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG 167
KNG TDWDAVIDAEARRRKWLE++PESSSN++PV+FDTSI+PWWAW+KRFHLPEAELLNG
Sbjct: 123 KNGTTDWDAVIDAEARRRKWLEDNPESSSNENPVVFDTSIIPWWAWMKRFHLPEAELLNG 182
Query: 168 AA 169
A
Sbjct: 183 RA 184
>gi|449459006|ref|XP_004147237.1| PREDICTED: uncharacterized protein LOC101206464 [Cucumis sativus]
gi|449510491|ref|XP_004163681.1| PREDICTED: uncharacterized LOC101206464 [Cucumis sativus]
Length = 266
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/188 (57%), Positives = 126/188 (67%), Gaps = 26/188 (13%)
Query: 1 MSTSIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKK-----ESFFTLRASAADNGAGVS 55
S S L +FSP + T FSF +P L ++ S FT+RA+A DNGAG+S
Sbjct: 7 FSPSSHLSTFSPSHHT----THFSF--RPFSSLRTRNPSSSSSSLFTIRATA-DNGAGIS 59
Query: 56 APA--VTVEEPKVR----------EASEGPTESNGAVEAPEVKAV--NKFEDPKWVNGTW 101
+ V+VE P + E E +NG+V A E +KFEDPKWVNGTW
Sbjct: 60 GGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTW 119
Query: 102 DLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPE 161
DL QFQKNG TDWDAVIDAEARRRKWLEN+PESSSN+DPV+FDTSIVPWWAWIKR+HLPE
Sbjct: 120 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 179
Query: 162 AELLNGAA 169
AELLNG A
Sbjct: 180 AELLNGRA 187
>gi|297745675|emb|CBI40929.3| unnamed protein product [Vitis vinifera]
Length = 227
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/162 (58%), Positives = 108/162 (66%), Gaps = 20/162 (12%)
Query: 10 FSPPPSSMLSRT--QFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEEPKVR 67
FSPP + L + +FT KP+ L SKK L A A +NGAG S A TVE K
Sbjct: 4 FSPPIPTHLPTLSPKPNFTLKPSLFLRSKKHQLLLLSAKATENGAGTSTSATTVEPEKAE 63
Query: 68 EASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKW 127
E +APE D KWV GTWDLKQF+ +G+T+WDAVIDAE RRRKW
Sbjct: 64 E------------KAPEAA------DLKWVGGTWDLKQFETDGKTNWDAVIDAEVRRRKW 105
Query: 128 LENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
LE++PESSSNDDPV+FDTSI+PWWAWIKRFHLPEAELLNG A
Sbjct: 106 LEDNPESSSNDDPVVFDTSIIPWWAWIKRFHLPEAELLNGRA 147
>gi|356510909|ref|XP_003524176.1| PREDICTED: uncharacterized protein LOC100789538 [Glycine max]
Length = 264
Score = 174 bits (442), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/182 (56%), Positives = 124/182 (68%), Gaps = 16/182 (8%)
Query: 2 STSIDLLSFSPP------PSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVS 55
S S + SFSPP PSS S+ + + + F L S+ S L+A+A++NG G +
Sbjct: 5 SMSTTMASFSPPTHFSATPSS--SKPRLVYKNNFFFSLRSRSLSLSPLKAAASENGVGTA 62
Query: 56 A-----PAVTVEEPK---VREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQ 107
AV V EP V +S G S AVE+ VK + F DP+WV GTWDLKQFQ
Sbjct: 63 VEPPPEQAVPVPEPSLPPVDNSSVGTNGSAVAVESEVVKVQSSFVDPRWVAGTWDLKQFQ 122
Query: 108 KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG 167
KNG TDWDAVIDAEARRRKWLE++PESSSN++PV+FDTSIVPWWAW+KRFHLPEAELLNG
Sbjct: 123 KNGTTDWDAVIDAEARRRKWLEDNPESSSNENPVVFDTSIVPWWAWMKRFHLPEAELLNG 182
Query: 168 AA 169
A
Sbjct: 183 RA 184
>gi|2245118|emb|CAB10540.1| hypothetical protein [Arabidopsis thaliana]
gi|7268512|emb|CAB78763.1| hypothetical protein [Arabidopsis thaliana]
Length = 350
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 124/178 (69%), Gaps = 19/178 (10%)
Query: 10 FSPPPSSMLSRTQFSFTHKPTF-LLSSKKESFFTLRASAADNGAGVSAPAVTVEEPK--- 65
FSPP SS S +F K +F LLSS + S ++ +++D+G+ AV+VE P+
Sbjct: 4 FSPPISSS-SLQNPNFIPKFSFSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVEAPEPVE 62
Query: 66 --VRE---------ASEGPTESNGAVEAPEVK---AVNKFEDPKWVNGTWDLKQFQKNGQ 111
V+E E T N AVE E+K +V KF+D +W+NGTWDLKQF+K+G+
Sbjct: 63 VIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWDLKQFEKDGK 122
Query: 112 TDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
TDWD+VI AEA+RRKWLE +PE++SND+PV+FDTSI+PWWAWIKR+HLPEAELLNG A
Sbjct: 123 TDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRA 180
>gi|18414927|ref|NP_567532.1| chlorophyll A-B binding protein [Arabidopsis thaliana]
gi|4741966|gb|AAD28780.1|AF134133_1 Lil3 protein [Arabidopsis thaliana]
gi|14030673|gb|AAK53011.1|AF375427_1 AT4g17600/dl4835w [Arabidopsis thaliana]
gi|18491101|gb|AAL69517.1| AT4g17600/dl4835w [Arabidopsis thaliana]
gi|22530970|gb|AAM96989.1| Lil3 protein [Arabidopsis thaliana]
gi|23198388|gb|AAN15721.1| Lil3 protein [Arabidopsis thaliana]
gi|23306350|gb|AAN17402.1| Lil3 protein [Arabidopsis thaliana]
gi|25084208|gb|AAN72196.1| Lil3 protein [Arabidopsis thaliana]
gi|332658519|gb|AEE83919.1| chlorophyll A-B binding protein [Arabidopsis thaliana]
Length = 262
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 124/178 (69%), Gaps = 19/178 (10%)
Query: 10 FSPPPSSMLSRTQFSFTHKPTF-LLSSKKESFFTLRASAADNGAGVSAPAVTVEEPK--- 65
FSPP SS S +F K +F LLSS + S ++ +++D+G+ AV+VE P+
Sbjct: 4 FSPPISSS-SLQNPNFIPKFSFSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVEAPEPVE 62
Query: 66 --VRE---------ASEGPTESNGAVEAPEVK---AVNKFEDPKWVNGTWDLKQFQKNGQ 111
V+E E T N AVE E+K +V KF+D +W+NGTWDLKQF+K+G+
Sbjct: 63 VIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWDLKQFEKDGK 122
Query: 112 TDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
TDWD+VI AEA+RRKWLE +PE++SND+PV+FDTSI+PWWAWIKR+HLPEAELLNG A
Sbjct: 123 TDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRA 180
>gi|21555799|gb|AAM63936.1| Lil3 protein [Arabidopsis thaliana]
Length = 262
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 124/178 (69%), Gaps = 19/178 (10%)
Query: 10 FSPPPSSMLSRTQFSFTHKPTF-LLSSKKESFFTLRASAADNGAGVSAPAVTVEEPK--- 65
FSPP SS S +F K +F LLSS + S ++ +++D+G+ AV+VE P+
Sbjct: 4 FSPPISSS-SLQNPNFIPKFSFSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVEAPEPVE 62
Query: 66 --VRE---------ASEGPTESNGAVEAPEVK---AVNKFEDPKWVNGTWDLKQFQKNGQ 111
V+E E T N AVE E+K +V KF+D +W+NGTWDLKQF+K+G+
Sbjct: 63 VIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVIKFQDARWINGTWDLKQFEKDGK 122
Query: 112 TDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
TDWD+VI AEA+RRKWLE +PE++SND+PV+FDTSI+PWWAWIKR+HLPEAELLNG A
Sbjct: 123 TDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRA 180
>gi|388502596|gb|AFK39364.1| unknown [Lotus japonicus]
Length = 259
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 99/182 (54%), Positives = 118/182 (64%), Gaps = 19/182 (10%)
Query: 2 STSIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKESFFTLR-----------ASAADN 50
+ S + SFSP + S T S KP ++ FFTLR +++DN
Sbjct: 3 TMSTTMASFSP--LTRFSATLSSSNSKPHL---TQNHFFFTLRPKNLPLSPLKWKASSDN 57
Query: 51 GAGVSAPAVT-VEEP--KVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQ 107
GAG S A T VE P K+ + G S A A E+K FEDP+WV GTWDL QF+
Sbjct: 58 GAGASDSAATAVESPPEKISVGTNGSASSAAAAAAEELKIPGGFEDPRWVAGTWDLMQFR 117
Query: 108 KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG 167
KNG TDWDAVIDAEARRRKWL+++PESSSN++PV+FDTSIVPWWAWIKRFHLPEAE LNG
Sbjct: 118 KNGSTDWDAVIDAEARRRKWLQDNPESSSNENPVVFDTSIVPWWAWIKRFHLPEAERLNG 177
Query: 168 AA 169
A
Sbjct: 178 RA 179
>gi|297804424|ref|XP_002870096.1| Lil3 protein [Arabidopsis lyrata subsp. lyrata]
gi|297315932|gb|EFH46355.1| Lil3 protein [Arabidopsis lyrata subsp. lyrata]
Length = 261
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 122/178 (68%), Gaps = 19/178 (10%)
Query: 10 FSPPPSSMLSRTQFSFTHKPTF-LLSSKKESFFTLRASAADNGAGVSAPAVTVEEPK--- 65
FSPP SS S +F K +F LLS+ + S ++ +++D+G+ A VE P+
Sbjct: 4 FSPPISSS-SLQNPNFIPKFSFSLLSTNRFSLLSVTRASSDSGSTSPTSATAVEAPEPVE 62
Query: 66 --VREA---------SEGPTESNGAVEAPEVKA---VNKFEDPKWVNGTWDLKQFQKNGQ 111
++EA E T N AVE E+K V KF+D +W+NGTWDLKQF+K+G+
Sbjct: 63 VIIKEAPQSTPPVTKEEITTAKNVAVEGEEMKTTETVIKFQDARWINGTWDLKQFEKDGK 122
Query: 112 TDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
TDWD+VI AEA+RRKWLE +PE++SND+PV+FDTSI+PWWAWIKR+HLPEAELLNG A
Sbjct: 123 TDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRA 180
>gi|388503762|gb|AFK39947.1| unknown [Medicago truncatula]
Length = 258
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 90/119 (75%), Gaps = 1/119 (0%)
Query: 52 AGVSAPAVTVEEPKVREASEGPTESNGAV-EAPEVKAVNKFEDPKWVNGTWDLKQFQKNG 110
AG S A T +P S G S AV A EVK + F DP+WV GTWDL QF+KNG
Sbjct: 60 AGTSDSAETAVKPPPENISVGTNGSASAVPVAEEVKVSSAFVDPRWVAGTWDLMQFRKNG 119
Query: 111 QTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
TDWDAVIDAEARRRKWLE +PESSSND+PV+FDTSIVPWWAWIKRFHLPEAELLNG A
Sbjct: 120 TTDWDAVIDAEARRRKWLETNPESSSNDNPVVFDTSIVPWWAWIKRFHLPEAELLNGRA 178
>gi|89257528|gb|ABD65018.1| Lil3 protein, putative [Brassica oleracea]
Length = 225
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/160 (54%), Positives = 110/160 (68%), Gaps = 19/160 (11%)
Query: 11 SPPPSSMLSRTQFSFTHKPTFLLSSKKESFFTL-RASAADNGAGVSAPAVTVEEPKVREA 69
SPP SS L + + T LLS+K+ S F+L RAS++DNG + A TVE PK
Sbjct: 5 SPPISSPLLNSTLTPKILLT-LLSTKRLSLFSLTRASSSDNGTSATVSATTVEIPK---- 59
Query: 70 SEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLE 129
P A + D KWVNGTWDLKQF+K G+TDWD+VI +EA+RRKWLE
Sbjct: 60 -------------PVSPAKEEVPDAKWVNGTWDLKQFEKEGKTDWDSVIVSEAKRRKWLE 106
Query: 130 NSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
+SPE+++ND+PV+FDTSI+PWWAW+KR+HLPEAELLNG A
Sbjct: 107 DSPETTTNDEPVLFDTSIIPWWAWMKRYHLPEAELLNGRA 146
>gi|30695110|ref|NP_199522.2| Chlorophyll A-B binding family protein [Arabidopsis thaliana]
gi|38566672|gb|AAR24226.1| At5g47110 [Arabidopsis thaliana]
gi|46931268|gb|AAT06438.1| At5g47110 [Arabidopsis thaliana]
gi|332008089|gb|AED95472.1| Chlorophyll A-B binding family protein [Arabidopsis thaliana]
Length = 258
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 89/179 (49%), Positives = 122/179 (68%), Gaps = 16/179 (8%)
Query: 4 SIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEE 63
SI + FSPP SS L T LLS+K+ S ++ +++DNG ++P V + +
Sbjct: 2 SISMALFSPPISSSLQNPNL-IPKISTSLLSTKRFSLISVPRASSDNGT--TSPVVEIPK 58
Query: 64 PKVREASEGPTES---------NGAV--EAPE--VKAVNKFEDPKWVNGTWDLKQFQKNG 110
P E P +S NGAV EA + + V K+++ KWVNGTWDLKQF+K+G
Sbjct: 59 PASVAVEEVPVKSPAESSSASENGAVGGEATDSSTETVIKYQNAKWVNGTWDLKQFEKDG 118
Query: 111 QTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
+TDWD+VI +EA+RRKWLE++PE++SND+ V+FDTSI+PWWAW+KR+HLPEAELLNG A
Sbjct: 119 KTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMKRYHLPEAELLNGRA 177
>gi|297790951|ref|XP_002863360.1| hypothetical protein ARALYDRAFT_916691 [Arabidopsis lyrata subsp.
lyrata]
gi|297309195|gb|EFH39619.1| hypothetical protein ARALYDRAFT_916691 [Arabidopsis lyrata subsp.
lyrata]
Length = 264
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/187 (49%), Positives = 118/187 (63%), Gaps = 26/187 (13%)
Query: 4 SIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNG------AGVSAP 57
SI + FSPP +L T LLS+K+ S ++ +++DNG A VSA
Sbjct: 2 SISMAFFSPP---ILQNPNL-IPKISTSLLSTKRFSLISVPRASSDNGTTSPASASVSAT 57
Query: 58 AVTVEEPKV----------REASEGPTESNGAVEAPEVK-----AVNKFEDPKWVNGTWD 102
V VE PK + NGAV E V KFED KWVNGTWD
Sbjct: 58 TV-VEIPKPVAVAVEEVPVKSPESSSASGNGAVGGEETDLGTAATVIKFEDAKWVNGTWD 116
Query: 103 LKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEA 162
LKQF+K+G+TDWD+VI +EA+RRKWLE++PE++SND+PV+FDTSI+PWWAW+KR+HLPEA
Sbjct: 117 LKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDEPVLFDTSIIPWWAWMKRYHLPEA 176
Query: 163 ELLNGAA 169
ELLNG A
Sbjct: 177 ELLNGRA 183
>gi|8978078|dbj|BAA98106.1| Lil3 protein [Arabidopsis thaliana]
Length = 254
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 119/173 (68%), Gaps = 16/173 (9%)
Query: 10 FSPPPSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEEPKVREA 69
FSPP SS L T LLS+K+ S ++ +++DNG ++P V + +P
Sbjct: 4 FSPPISSSLQNPNL-IPKISTSLLSTKRFSLISVPRASSDNGT--TSPVVEIPKPASVAV 60
Query: 70 SEGPTES---------NGAV--EAPE--VKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDA 116
E P +S NGAV EA + + V K+++ KWVNGTWDLKQF+K+G+TDWD+
Sbjct: 61 EEVPVKSPAESSSASENGAVGGEATDSSTETVIKYQNAKWVNGTWDLKQFEKDGKTDWDS 120
Query: 117 VIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
VI +EA+RRKWLE++PE++SND+ V+FDTSI+PWWAW+KR+HLPEAELLNG A
Sbjct: 121 VIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMKRYHLPEAELLNGRA 173
>gi|194466215|gb|ACF74338.1| putative Lil3 protein [Arachis hypogaea]
Length = 175
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 105/169 (62%), Gaps = 20/169 (11%)
Query: 7 LLSFSPPPSSMLSRTQFSFTHKPTFLLS-SKKESFFTLRASAADNGAGVSAPAVTVEEPK 65
+ SFSPP + + + P FL + S +F ++S A
Sbjct: 1 MASFSPPTHFPATTSTLTNRRNPVFLTTLSHTNNFSPFKSSLISEAA------------- 47
Query: 66 VREASEGPTESNGAVEA-----PEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDA 120
E S P + NG+V A +V VN F DP+WV GTWDL QFQKNG TDWD+VIDA
Sbjct: 48 -TEPSPSPEQGNGSVAAVAPTTTKVPEVNPFGDPRWVGGTWDLTQFQKNGNTDWDSVIDA 106
Query: 121 EARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
EA RRKWLE++PESSSND+PV+FDTSI+PWWAW+KRFHLPEAE LNG A
Sbjct: 107 EASRRKWLEDNPESSSNDNPVVFDTSIIPWWAWMKRFHLPEAEQLNGRA 155
>gi|89257427|gb|ABD64919.1| Lil3 protein, putative [Brassica oleracea]
Length = 248
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 114/171 (66%), Gaps = 20/171 (11%)
Query: 10 FSPPPSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVS----APAVTVEEPK 65
FSPP SS L + +L S ++ +++DNGA + A TVE PK
Sbjct: 4 FSPPISSSL---------RNPYLSPKNSLSLLSVTRASSDNGASTTDSAAVSATTVEIPK 54
Query: 66 -----VREA-SEGPTESNG-AVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVI 118
V E S+ P ES+ + P + KFED KWVNGTWDLKQF+K+G+TDWD++I
Sbjct: 55 PASVTVEEVPSKSPAESSSDETDLPTTETGIKFEDAKWVNGTWDLKQFEKDGKTDWDSII 114
Query: 119 DAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
AEA+RRKWLE++PE+++N +PV+FDTSI+PWWAW+KR+HLPEAELLNG A
Sbjct: 115 VAEAKRRKWLEDNPETTTNAEPVLFDTSIIPWWAWMKRYHLPEAELLNGRA 165
>gi|218189966|gb|EEC72393.1| hypothetical protein OsI_05674 [Oryza sativa Indica Group]
Length = 787
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/122 (60%), Positives = 86/122 (70%), Gaps = 8/122 (6%)
Query: 56 APAVTVEEPKVR-EASEGPTESNGAVEAPE-------VKAVNKFEDPKWVNGTWDLKQFQ 107
AP TVE P + EA P SNGA E + KF D +WVNGTWDL+QF+
Sbjct: 587 APVETVEAPPSKPEAEPSPAASNGAAVKAEKPPAAAAAPPLPKFRDSRWVNGTWDLRQFE 646
Query: 108 KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG 167
K G DWDAVIDAEARRRKWLE+ PE++S D+ V+FDTSI+PWWAW+KRFHLPEAE LNG
Sbjct: 647 KGGAVDWDAVIDAEARRRKWLEDCPEATSPDEAVVFDTSIIPWWAWMKRFHLPEAEKLNG 706
Query: 168 AA 169
A
Sbjct: 707 RA 708
>gi|215678600|dbj|BAG92255.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 250
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/165 (51%), Positives = 99/165 (60%), Gaps = 11/165 (6%)
Query: 13 PPSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEEPKVR-EASE 71
PP+S LS T+ P L S S A AP TVE P + EA
Sbjct: 10 PPASQLSLTRRRLHPGPDLLTLS---SPRLRAGLRLARAAAGEAPVETVEAPPSKPEAEP 66
Query: 72 GPTESNGAVEAPE-------VKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARR 124
P SNGA E + KF D +WVNGTWDL+QF+K G DWDAVIDAEARR
Sbjct: 67 SPAASNGAAVKAEKPPAAAAAPPLPKFRDSRWVNGTWDLRQFEKGGAVDWDAVIDAEARR 126
Query: 125 RKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
RKWLE+ PE++S D+ V+FDTSI+PWWAW+KRFHLPEAE LNG A
Sbjct: 127 RKWLEDCPEATSPDEAVVFDTSIIPWWAWMKRFHLPEAEKLNGRA 171
>gi|41053067|dbj|BAD08011.1| putative Lil3 protein [Oryza sativa Japonica Group]
Length = 248
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/165 (51%), Positives = 99/165 (60%), Gaps = 11/165 (6%)
Query: 13 PPSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEEPKVR-EASE 71
PP+S LS T+ P L S S A AP TVE P + EA
Sbjct: 8 PPASQLSLTRRRLHPGPDLLTLS---SPRLRAGLRLARAAAGEAPVETVEAPPSKPEAEP 64
Query: 72 GPTESNGAVEAPE-------VKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARR 124
P SNGA E + KF D +WVNGTWDL+QF+K G DWDAVIDAEARR
Sbjct: 65 SPAASNGAAVKAEKPPAAAAAPPLPKFRDSRWVNGTWDLRQFEKGGAVDWDAVIDAEARR 124
Query: 125 RKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
RKWLE+ PE++S D+ V+FDTSI+PWWAW+KRFHLPEAE LNG A
Sbjct: 125 RKWLEDCPEATSPDEAVVFDTSIIPWWAWMKRFHLPEAEKLNGRA 169
>gi|255639271|gb|ACU19934.1| unknown [Glycine max]
Length = 240
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 61/79 (77%), Positives = 73/79 (92%)
Query: 91 FEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPW 150
FE+P+W+ GTWDLKQFQ NG TDWDAVIDAE +RRKWL ++PESS+ND+PV+F+T+I+PW
Sbjct: 57 FEEPRWIGGTWDLKQFQINGNTDWDAVIDAEVKRRKWLGDNPESSTNDNPVVFNTAIIPW 116
Query: 151 WAWIKRFHLPEAELLNGAA 169
WAWIKRFHLPEAELLNG A
Sbjct: 117 WAWIKRFHLPEAELLNGRA 135
>gi|168006769|ref|XP_001756081.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692591|gb|EDQ78947.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 304
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 70/81 (86%)
Query: 89 NKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIV 148
KFEDP+W NGTWDL QF +G+TDWDA+IDAE RRK LE +PESSSNDD V+FDTSIV
Sbjct: 143 GKFEDPRWKNGTWDLSQFTTDGKTDWDAIIDAEVVRRKILEANPESSSNDDEVVFDTSIV 202
Query: 149 PWWAWIKRFHLPEAELLNGAA 169
PWWAW+KRFHLPEAELLNG A
Sbjct: 203 PWWAWVKRFHLPEAELLNGRA 223
>gi|302791046|ref|XP_002977290.1| LHC-related protein [Selaginella moellendorffii]
gi|300155266|gb|EFJ21899.1| LHC-related protein [Selaginella moellendorffii]
Length = 232
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 82/104 (78%), Gaps = 3/104 (2%)
Query: 68 EASEGPTESNGAVEAPEVKAVN--KFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRR 125
EA+EG S A+ + AV+ KFEDP+W NG WD+ +F KNG+ DWDAVIDAE RR
Sbjct: 52 EAAEGKDPSPAAL-GKKSSAVSGEKFEDPRWKNGNWDMTKFVKNGKMDWDAVIDAEVLRR 110
Query: 126 KWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
KWLE +PE+SSNDDPV+FDT+ VPWWAW++RFHLPEAELLNG A
Sbjct: 111 KWLEENPEASSNDDPVLFDTATVPWWAWVRRFHLPEAELLNGRA 154
>gi|302821024|ref|XP_002992177.1| LHC-related protein [Selaginella moellendorffii]
gi|300140103|gb|EFJ06832.1| LHC-related protein [Selaginella moellendorffii]
Length = 232
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 82/104 (78%), Gaps = 3/104 (2%)
Query: 68 EASEGPTESNGAVEAPEVKAVN--KFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRR 125
EA+EG S A+ + AV+ KFEDP+W NG WD+ +F KNG+ DWDAVIDAE RR
Sbjct: 52 EAAEGKDPSPAAL-GKKSSAVSGEKFEDPRWKNGNWDMTKFVKNGKMDWDAVIDAEVLRR 110
Query: 126 KWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
KWLE +PE+SSNDDPV+FDT+ VPWWAW++RFHLPEAELLNG A
Sbjct: 111 KWLEENPEASSNDDPVLFDTATVPWWAWVRRFHLPEAELLNGRA 154
>gi|116789792|gb|ABK25387.1| unknown [Picea sitchensis]
Length = 371
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 97/167 (58%), Gaps = 42/167 (25%)
Query: 45 ASAADNGAGVSAPAVTVE-------------------EPKVREASEG----PTESNGAVE 81
+ A DNG GV + V+ KV+EAS+ P E G +
Sbjct: 125 SKAEDNGTGVENAVIEVKGSESGENSVDGNGITGASSAEKVQEASKSRKSSPLERGGTLI 184
Query: 82 APEVKA------------------VN-KFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEA 122
E K VN +FED +W NGTW+++QF K+ + DWDAVIDAE
Sbjct: 185 GAEAKGKDPSPAAVFGINSSSFSNVNGRFEDLRWENGTWNIQQFIKDNKVDWDAVIDAEV 244
Query: 123 RRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
RRRKWLE++PE+SSN DPV+FDTSIVPWWAW+KRFHLP+AELLNG A
Sbjct: 245 RRRKWLEDNPETSSNKDPVVFDTSIVPWWAWVKRFHLPQAELLNGRA 291
>gi|168026465|ref|XP_001765752.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682929|gb|EDQ69343.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 71/92 (77%)
Query: 78 GAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSN 137
G P KFEDP+W GTWD+ +F +NG+ DWDAVIDAE RRKWLE +PE+S+N
Sbjct: 210 GKNATPASNGSGKFEDPRWSAGTWDITKFTRNGKIDWDAVIDAEVVRRKWLEENPETSNN 269
Query: 138 DDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
+PV+FDT+ VPWWAW+KRFHLPEAELLNG A
Sbjct: 270 AEPVVFDTATVPWWAWVKRFHLPEAELLNGRA 301
>gi|293334605|ref|NP_001167647.1| lil3 protein [Zea mays]
gi|194692076|gb|ACF80122.1| unknown [Zea mays]
gi|195608918|gb|ACG26289.1| lil3 protein [Zea mays]
gi|413935395|gb|AFW69946.1| lil3 protein [Zea mays]
Length = 246
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/79 (74%), Positives = 67/79 (84%)
Query: 91 FEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPW 150
F D +WVNGTWDL +F K G DWDAVIDAEARRRKWLE+ PE++S DD V+FDTSI+PW
Sbjct: 89 FRDARWVNGTWDLTKFDKGGGVDWDAVIDAEARRRKWLEDYPEATSTDDAVVFDTSIIPW 148
Query: 151 WAWIKRFHLPEAELLNGAA 169
WAW+KRFHLPEAE LNG A
Sbjct: 149 WAWMKRFHLPEAEKLNGRA 167
>gi|226508526|ref|NP_001151867.1| lil3 protein [Zea mays]
gi|195650413|gb|ACG44674.1| lil3 protein [Zea mays]
Length = 250
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/79 (74%), Positives = 67/79 (84%)
Query: 91 FEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPW 150
F D +WVNGTWDL +F K G DWDAVIDAEARRRKWLE+ PE++S DD V+FDTSI+PW
Sbjct: 93 FRDARWVNGTWDLTKFDKGGGVDWDAVIDAEARRRKWLEDYPEATSTDDAVVFDTSIIPW 152
Query: 151 WAWIKRFHLPEAELLNGAA 169
WAW+KRFHLPEAE LNG A
Sbjct: 153 WAWMKRFHLPEAEKLNGRA 171
>gi|242060328|ref|XP_002451453.1| hypothetical protein SORBIDRAFT_04g002190 [Sorghum bicolor]
gi|241931284|gb|EES04429.1| hypothetical protein SORBIDRAFT_04g002190 [Sorghum bicolor]
Length = 253
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 59/79 (74%), Positives = 67/79 (84%)
Query: 91 FEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPW 150
F D +WVNGTWDL QF K G DWDAVIDAEARRRKWLE+ PE++S D+ V+FDTSI+PW
Sbjct: 96 FRDARWVNGTWDLTQFDKGGVVDWDAVIDAEARRRKWLEDYPEATSTDEAVVFDTSIIPW 155
Query: 151 WAWIKRFHLPEAELLNGAA 169
WAW+KRFHLPEAE LNG A
Sbjct: 156 WAWMKRFHLPEAEKLNGRA 174
>gi|413935396|gb|AFW69947.1| hypothetical protein ZEAMMB73_081697 [Zea mays]
Length = 178
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 67/78 (85%)
Query: 91 FEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPW 150
F D +WVNGTWDL +F K G DWDAVIDAEARRRKWLE+ PE++S DD V+FDTSI+PW
Sbjct: 89 FRDARWVNGTWDLTKFDKGGGVDWDAVIDAEARRRKWLEDYPEATSTDDAVVFDTSIIPW 148
Query: 151 WAWIKRFHLPEAELLNGA 168
WAW+KRFHLPEAE LNG+
Sbjct: 149 WAWMKRFHLPEAEKLNGS 166
>gi|168061339|ref|XP_001782647.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665880|gb|EDQ52550.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 304
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 70/83 (84%)
Query: 87 AVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTS 146
++ F+DP+W NGTWDL QF +G+TDWDAVIDAE RRK LE +P SS+N+D V+FDTS
Sbjct: 141 SLGTFDDPRWKNGTWDLSQFTTDGKTDWDAVIDAEVVRRKILETNPVSSNNEDEVVFDTS 200
Query: 147 IVPWWAWIKRFHLPEAELLNGAA 169
IVPWWAW+KRFHLPEAELLNG A
Sbjct: 201 IVPWWAWVKRFHLPEAELLNGRA 223
>gi|326516062|dbj|BAJ88054.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531942|dbj|BAK01347.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 253
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 70/81 (86%), Gaps = 1/81 (1%)
Query: 90 KFEDPKWVNGTWDLKQF-QKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIV 148
KF+D +WVNGTWDL +F G DWDAVIDAEARRRKWLE+SPE+SS++D V+FDTSI+
Sbjct: 94 KFQDSRWVNGTWDLSRFGNTGGAVDWDAVIDAEARRRKWLEDSPEASSSEDAVVFDTSII 153
Query: 149 PWWAWIKRFHLPEAELLNGAA 169
PWWAWIKRFHLPEAE LNG A
Sbjct: 154 PWWAWIKRFHLPEAEKLNGRA 174
>gi|357146068|ref|XP_003573865.1| PREDICTED: uncharacterized protein LOC100830126 [Brachypodium
distachyon]
Length = 249
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 84 EVKAVNKFEDPKWVNGTWDLKQF-QKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVI 142
E A +F D +WVNGTWDL F +K G DWDAVIDAEARRRKWLE+ PE+SS+D+ V+
Sbjct: 84 EESASPRFNDSRWVNGTWDLDLFGRKAGAVDWDAVIDAEARRRKWLEDFPEASSSDEAVV 143
Query: 143 FDTSIVPWWAWIKRFHLPEAELLNGAA 169
FDTSI+PWWAWIKRFHLPEAE LNG A
Sbjct: 144 FDTSIIPWWAWIKRFHLPEAEKLNGRA 170
>gi|413926713|gb|AFW66645.1| lil3 protein [Zea mays]
Length = 239
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 65/79 (82%)
Query: 91 FEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPW 150
F D +WVNGTWDL +F K DWDAVIDAEARRR+WLE+ PE+++ D+ V+F TSI+PW
Sbjct: 82 FRDARWVNGTWDLAKFDKGSGVDWDAVIDAEARRRRWLEDYPEATNTDEAVVFATSIIPW 141
Query: 151 WAWIKRFHLPEAELLNGAA 169
WAW+KRFHLPEAE LNG A
Sbjct: 142 WAWMKRFHLPEAEKLNGRA 160
>gi|195607738|gb|ACG25699.1| lil3 protein [Zea mays]
Length = 239
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 65/79 (82%)
Query: 91 FEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPW 150
F D +WVNGTWDL +F K DWDAVIDAEARRR+WLE+ PE+++ D+ V+F TSI+PW
Sbjct: 82 FRDARWVNGTWDLAKFDKGSGVDWDAVIDAEARRRRWLEDYPEATNTDEAVVFATSIIPW 141
Query: 151 WAWIKRFHLPEAELLNGAA 169
WAW+KRFHLPEAE LNG A
Sbjct: 142 WAWMKRFHLPEAEKLNGRA 160
>gi|225454884|ref|XP_002275690.1| PREDICTED: uncharacterized protein LOC100259582 [Vitis vinifera]
Length = 259
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 63/80 (78%)
Query: 90 KFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVP 149
KF D +W NGTWDL F ++G+ DWD VI AEARRRK+LE PES++N +PV+F +SI+P
Sbjct: 94 KFSDERWKNGTWDLNMFVRDGKMDWDGVIVAEARRRKFLEMYPESATNQEPVLFRSSIIP 153
Query: 150 WWAWIKRFHLPEAELLNGAA 169
WWAW+ R HL EAEL+NG A
Sbjct: 154 WWAWMMRSHLQEAELINGRA 173
>gi|297737381|emb|CBI26582.3| unnamed protein product [Vitis vinifera]
Length = 226
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 63/80 (78%)
Query: 90 KFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVP 149
KF D +W NGTWDL F ++G+ DWD VI AEARRRK+LE PES++N +PV+F +SI+P
Sbjct: 61 KFSDERWKNGTWDLNMFVRDGKMDWDGVIVAEARRRKFLEMYPESATNQEPVLFRSSIIP 120
Query: 150 WWAWIKRFHLPEAELLNGAA 169
WWAW+ R HL EAEL+NG A
Sbjct: 121 WWAWMMRSHLQEAELINGRA 140
>gi|307103578|gb|EFN51837.1| hypothetical protein CHLNCDRAFT_59785 [Chlorella variabilis]
Length = 250
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 84/149 (56%), Gaps = 21/149 (14%)
Query: 42 TLRASAADNGAGVSAPAVTVEEPKVREASEGPT------------------ESNGAVEAP 83
++R ++NGAG S + ++ K G T + G P
Sbjct: 24 SVRCEVSENGAGASTATLEKKDRKPSPLQRGGTLQGAAAAGKDASDKFKSMATGGKTGGP 83
Query: 84 EVKAVN-KFEDPKWVNGTWDLKQF--QKNGQTDWDAVIDAEARRRKWLENSPESSSNDDP 140
++ V+ +FED +W G WDL F K G+T WD VIDAE RRK LE+SP +N+DP
Sbjct: 84 VLQMVDGRFEDYRWKGGRWDLSLFADSKTGETSWDDVIDAEMARRKLLEDSPIPCTNEDP 143
Query: 141 VIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
V+FDT+ +PWWAW++RFHLPEAE LNG A
Sbjct: 144 VLFDTAEIPWWAWVRRFHLPEAEKLNGRA 172
>gi|224155125|ref|XP_002337566.1| light harvesting protein 3 [Populus trichocarpa]
gi|222839577|gb|EEE77914.1| light harvesting protein 3 [Populus trichocarpa]
Length = 249
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 82/122 (67%), Gaps = 2/122 (1%)
Query: 50 NGAGVSAPAVTVEEPKVREASEGPTESNGAVE-APEVK-AVNKFEDPKWVNGTWDLKQFQ 107
N G ++ ++ K A+ G ++N +E E K +V KF D +W GTWDL F
Sbjct: 45 NVEGQRGVGMSEQQEKPALATGGSNKANDKLENGLETKHSVPKFIDERWKKGTWDLNMFV 104
Query: 108 KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG 167
++G+ DWD +I+AEA+RRK +E P + +N++PV+F +SI+PWWAW+KR +LPEAELLNG
Sbjct: 105 RDGKMDWDGLIEAEAKRRKIIELYPNTCTNEEPVLFRSSIIPWWAWLKRSYLPEAELLNG 164
Query: 168 AA 169
A
Sbjct: 165 RA 166
>gi|159482731|ref|XP_001699421.1| low molecular mass early light-induced protein [Chlamydomonas
reinhardtii]
gi|54649970|dbj|BAD67136.1| Lhc-like protein Lhl3 [Chlamydomonas reinhardtii]
gi|158272872|gb|EDO98667.1| low molecular mass early light-induced protein [Chlamydomonas
reinhardtii]
Length = 249
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 63/83 (75%), Gaps = 2/83 (2%)
Query: 89 NKFEDPKWVNGTWDLKQFQ--KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTS 146
+F D +W++G WDL QF+ K G+ DWD VIDAE RRK LE++P S N++PV FDTS
Sbjct: 86 GRFRDDRWIDGRWDLSQFKSAKTGEVDWDLVIDAEVARRKLLEDNPIPSINEEPVNFDTS 145
Query: 147 IVPWWAWIKRFHLPEAELLNGAA 169
+PWWAW+KRFHLPEAE LNG A
Sbjct: 146 EIPWWAWVKRFHLPEAEKLNGRA 168
>gi|88911208|gb|ABD58894.1| chloroplast Lhc-like protein 1 [Mesostigma viride]
Length = 280
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 68/84 (80%), Gaps = 3/84 (3%)
Query: 89 NKFEDPKWVN--GTWDLKQFQ-KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDT 145
+FEDP+W+ GTWD ++F+ NG+TDWD+VIDAE RRRK LE++P +S+N++PV F+
Sbjct: 121 GRFEDPRWIKAAGTWDFEKFKLDNGETDWDSVIDAEVRRRKLLEDAPIASTNEEPVKFEL 180
Query: 146 SIVPWWAWIKRFHLPEAELLNGAA 169
S VP W W++RFHLP+AE++NG A
Sbjct: 181 STVPLWVWVRRFHLPQAEMINGRA 204
>gi|302854730|ref|XP_002958870.1| low molecular mass early light-induced protein [Volvox carteri f.
nagariensis]
gi|300255772|gb|EFJ40058.1| low molecular mass early light-induced protein [Volvox carteri f.
nagariensis]
Length = 250
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 67/97 (69%), Gaps = 3/97 (3%)
Query: 76 SNGAVEAPEVKAV--NKFEDPKWVNGTWDLKQFQKN-GQTDWDAVIDAEARRRKWLENSP 132
+ GA A + + F D +WV G WDL QF+ + G+ DWD VIDAE RRK LE++P
Sbjct: 71 ATGAASAVTILQIVDGHFRDDRWVGGRWDLNQFKDSTGEVDWDKVIDAEVARRKLLEDNP 130
Query: 133 ESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
S N+DPV FDTS +PWWAW++RFHLPEAE LNG A
Sbjct: 131 IPSINEDPVNFDTSEIPWWAWVRRFHLPEAEKLNGRA 167
>gi|255075991|ref|XP_002501670.1| light induced like protein [Micromonas sp. RCC299]
gi|226516934|gb|ACO62928.1| light induced like protein [Micromonas sp. RCC299]
Length = 238
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 72/111 (64%), Gaps = 6/111 (5%)
Query: 60 TVEEPKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQK-NGQTDWDAVI 118
T+E K G GA+ A ++ DP+WVNGTWDL QF+ NG+TDW+AVI
Sbjct: 54 TLEGEKAAGKDAGVAAKTGALFA---NGTQEWSDPRWVNGTWDLNQFKLPNGETDWNAVI 110
Query: 119 DAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
DAE RK LE+ P + D+ +FDTSIVPWW W+KRFHLPEAE +NG A
Sbjct: 111 DAEVVHRKALEDCP--AVYDEDGLFDTSIVPWWVWVKRFHLPEAEKINGRA 159
>gi|449528459|ref|XP_004171222.1| PREDICTED: uncharacterized protein LOC101227616 [Cucumis sativus]
Length = 256
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 62/80 (77%)
Query: 90 KFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVP 149
+F D +W NGTWDL F +NG+ DW+ VI EA+RRK+LE PE+++N +PV+F +SI+P
Sbjct: 104 RFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAKRRKFLEIHPEAATNQEPVVFRSSIIP 163
Query: 150 WWAWIKRFHLPEAELLNGAA 169
WW W+ + +LP+AELLNG A
Sbjct: 164 WWVWLTKSYLPQAELLNGRA 183
>gi|449458317|ref|XP_004146894.1| PREDICTED: uncharacterized protein LOC101203022 [Cucumis sativus]
Length = 220
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 62/80 (77%)
Query: 90 KFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVP 149
+F D +W NGTWDL F +NG+ DW+ VI EA+RRK+LE PE+++N +PV+F +SI+P
Sbjct: 68 RFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAKRRKFLEIHPEAATNQEPVVFRSSIIP 127
Query: 150 WWAWIKRFHLPEAELLNGAA 169
WW W+ + +LP+AELLNG A
Sbjct: 128 WWVWLTKSYLPQAELLNGRA 147
>gi|303286627|ref|XP_003062603.1| light induced like protein [Micromonas pusilla CCMP1545]
gi|226456120|gb|EEH53422.1| light induced like protein [Micromonas pusilla CCMP1545]
Length = 248
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 3/78 (3%)
Query: 93 DPKWVNGTWDLKQFQ-KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWW 151
DP+WVNGTWDL QF+ +G+TDW+AVIDAE RK LE+ P + D+ +FDTSIVPWW
Sbjct: 94 DPRWVNGTWDLSQFKLADGETDWNAVIDAEVVHRKALEDCP--AVYDEDGLFDTSIVPWW 151
Query: 152 AWIKRFHLPEAELLNGAA 169
W+KRFHLPEAE +NG A
Sbjct: 152 VWVKRFHLPEAEKINGRA 169
>gi|384253230|gb|EIE26705.1| hypothetical protein COCSUDRAFT_64621 [Coccomyxa subellipsoidea
C-169]
Length = 200
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 65/83 (78%), Gaps = 3/83 (3%)
Query: 90 KFEDPKWVNGTWDLKQ--FQ-KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTS 146
K+ D +W+NG+WDL+ F+ ++G+ +WD VIDAE RR+ LE+SP S+N+DPV FDT+
Sbjct: 39 KYSDYRWINGSWDLESSAFKAQDGKVNWDLVIDAEMARRRLLEDSPIPSTNEDPVFFDTA 98
Query: 147 IVPWWAWIKRFHLPEAELLNGAA 169
+PWWAW+KRFHLPEAE NG A
Sbjct: 99 QIPWWAWVKRFHLPEAEKANGRA 121
>gi|359497612|ref|XP_003635583.1| PREDICTED: uncharacterized protein LOC100853827 [Vitis vinifera]
Length = 134
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/53 (84%), Positives = 50/53 (94%)
Query: 117 VIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
+ DAE RRRKWLE++PESSSNDDPV+FDTSI+PWWAWIKRFHLPEAELLNG A
Sbjct: 2 LYDAEVRRRKWLEDNPESSSNDDPVVFDTSIIPWWAWIKRFHLPEAELLNGRA 54
>gi|296090705|emb|CBI41107.3| unnamed protein product [Vitis vinifera]
Length = 113
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/53 (84%), Positives = 50/53 (94%)
Query: 117 VIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
+ DAE RRRKWLE++PESSSNDDPV+FDTSI+PWWAWIKRFHLPEAELLNG A
Sbjct: 2 LYDAEVRRRKWLEDNPESSSNDDPVVFDTSIIPWWAWIKRFHLPEAELLNGRA 54
>gi|308801589|ref|XP_003078108.1| Lhc-like protein Lhl3 (ISS) [Ostreococcus tauri]
gi|116056559|emb|CAL52848.1| Lhc-like protein Lhl3 (ISS) [Ostreococcus tauri]
Length = 209
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 60/81 (74%), Gaps = 3/81 (3%)
Query: 90 KFEDPKWVNGTWDLKQFQKN-GQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIV 148
K+ DP+WVNG WDL+QF+ + G+ DWDAVIDAE RK LE+ P + D+ +FDTSIV
Sbjct: 51 KWSDPRWVNGNWDLEQFKNSAGEVDWDAVIDAEIVHRKMLEDCP--AVYDEDGLFDTSIV 108
Query: 149 PWWAWIKRFHLPEAELLNGAA 169
PW W++RFHLPEAE NG A
Sbjct: 109 PWHVWMRRFHLPEAEKANGRA 129
>gi|412985699|emb|CCO19145.1| predicted protein [Bathycoccus prasinos]
Length = 231
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 57/85 (67%), Gaps = 3/85 (3%)
Query: 86 KAVNKFEDPKWVNGTWDLKQFQK-NGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFD 144
K+ K+ED +WVNGTWDL QF K +G TDW+AVIDAE RK LE +P + D+ FD
Sbjct: 69 KSTQKWEDSRWVNGTWDLAQFAKADGTTDWNAVIDAEIVHRKMLEENP--AVYDEDGTFD 126
Query: 145 TSIVPWWAWIKRFHLPEAELLNGAA 169
+PW W+ RFHLPEAE NG A
Sbjct: 127 LGQIPWQVWMMRFHLPEAEKANGRA 151
>gi|145344198|ref|XP_001416624.1| possible early light inducible protein [Ostreococcus lucimarinus
CCE9901]
gi|144576850|gb|ABO94917.1| possible early light inducible protein [Ostreococcus lucimarinus
CCE9901]
Length = 170
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 78 GAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKN-GQTDWDAVIDAEARRRKWLENSPESSS 136
GA+ A E ++++DP+W NG WDL F+ G+ DWDAVIDAE RK LE++P +
Sbjct: 3 GAIFAGEQ---SQWKDPRWKNGNWDLDMFKNAAGEVDWDAVIDAEVVHRKMLEDNP--AV 57
Query: 137 NDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
D+ +FDTSIVPW W++RFHLPEAE NG A
Sbjct: 58 YDEDGLFDTSIVPWQVWMRRFHLPEAEKANGRA 90
>gi|255539943|ref|XP_002511036.1| transcription factor, putative [Ricinus communis]
gi|223550151|gb|EEF51638.1| transcription factor, putative [Ricinus communis]
Length = 240
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 19/105 (18%)
Query: 73 PTESNGAVEA-------PEVKAVN-KFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARR 124
P ++NG+ A PE ++ F D +W G WDL F K+ EA+R
Sbjct: 62 PLDANGSKRADDKSDHGPEAESSTPTFIDERWQMGNWDLNMFVKD-----------EAKR 110
Query: 125 RKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
RK+LE PE+S+N++PV+F +SI+PWW W+KR +LPEAEL+NG A
Sbjct: 111 RKFLELYPEASTNEEPVLFRSSIIPWWVWLKRSYLPEAELINGRA 155
>gi|224134286|ref|XP_002321782.1| light harvesting-like protein 3 [Populus trichocarpa]
gi|222868778|gb|EEF05909.1| light harvesting-like protein 3 [Populus trichocarpa]
Length = 134
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 33/38 (86%)
Query: 132 PESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
P + +N++PV+F +SI+PWWAW+KR +LPEAELLNG A
Sbjct: 10 PNTCTNEEPVLFRSSIIPWWAWLKRSYLPEAELLNGRA 47
>gi|340617446|ref|YP_004735899.1| hypothetical protein zobellia_1455 [Zobellia galactanivorans]
gi|339732243|emb|CAZ95511.1| Conserved hypothetical protein [Zobellia galactanivorans]
Length = 246
Score = 35.4 bits (80), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 20 RTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEEPKVREASEGPTESNGA 79
RTQ ++ + +KE+ T D P V ++ PK E S+ N A
Sbjct: 2 RTQVTYIILLLVFVGCQKENKLTFETLNLDETRCSECPTVEIQIPKALENSKMAKTINTA 61
Query: 80 VEAPEVKAVNKFED-----------PKWVNGTWDLKQFQKNGQTDWDAVIDAEA 122
++ ++ +N ++D + NG W+LK+ T W+A I+ +
Sbjct: 62 LKEEIIETLN-YDDELEASSIKDAVESFSNGYWELKKLYPEEATRWEANIEGKV 114
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.127 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,877,218,164
Number of Sequences: 23463169
Number of extensions: 113707731
Number of successful extensions: 246686
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 246576
Number of HSP's gapped (non-prelim): 75
length of query: 171
length of database: 8,064,228,071
effective HSP length: 131
effective length of query: 40
effective length of database: 9,285,520,228
effective search space: 371420809120
effective search space used: 371420809120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 71 (32.0 bits)