Query 030789
Match_columns 171
No_of_seqs 35 out of 37
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 06:51:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a7m_A Flagellar protein FLIT; 31.6 19 0.00066 26.5 1.6 19 112-130 28-46 (122)
2 3nkz_A Flagellar protein FLIT; 28.7 26 0.00088 25.9 1.8 21 110-130 29-49 (123)
3 3h3m_A Flagellar protein FLIT; 26.3 27 0.00093 26.1 1.6 20 111-130 40-59 (126)
4 1hym_A CMTI-V, hydrolyzed cucu 17.3 52 0.0018 21.0 1.3 36 110-148 6-43 (45)
5 3q87_A Putative uncharacterize 15.3 26 0.00089 26.6 -0.6 18 103-120 42-59 (125)
6 3h3g_B Parathyroid hormone-rel 14.9 55 0.0019 19.1 0.9 10 121-130 6-15 (24)
7 1bwx_A Parathyroid hormone; pe 14.9 38 0.0013 21.8 0.2 10 121-130 17-26 (39)
8 1et1_A Parathyroid hormone; he 14.5 56 0.0019 20.3 0.9 11 120-130 16-26 (34)
9 2zop_A Putative uncharacterize 14.4 51 0.0017 23.9 0.8 11 147-157 97-107 (114)
10 1yco_A Branched-chain phosphot 11.7 88 0.003 25.5 1.5 36 106-143 183-218 (279)
No 1
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=31.59 E-value=19 Score=26.54 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=16.8
Q ss_pred cCchhhhhHHHHHhhhhhc
Q 030789 112 TDWDAVIDAEARRRKWLEN 130 (171)
Q Consensus 112 ~dWDaVIdAE~~rRK~Led 130 (171)
=|||.||.-|....+.+|.
T Consensus 28 gdWD~Lv~lE~~y~~~Ve~ 46 (122)
T 3a7m_A 28 GEWDLLLQQEVSYLQSIET 46 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3899999999999998775
No 2
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=28.74 E-value=26 Score=25.92 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=17.3
Q ss_pred CCcCchhhhhHHHHHhhhhhc
Q 030789 110 GQTDWDAVIDAEARRRKWLEN 130 (171)
Q Consensus 110 G~~dWDaVIdAE~~rRK~Led 130 (171)
-.=|||.||.-|......+|.
T Consensus 29 ~~gdWD~Lv~lE~~y~~lVe~ 49 (123)
T 3nkz_A 29 TEGNWDALVDLEMTYLKAVES 49 (123)
T ss_dssp TTSCTTHHHHHHHHHHHHHHH
T ss_pred HHCcHHHHHHHHHHHHHHHHH
Confidence 345899999999998887764
No 3
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=26.26 E-value=27 Score=26.06 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=16.8
Q ss_pred CcCchhhhhHHHHHhhhhhc
Q 030789 111 QTDWDAVIDAEARRRKWLEN 130 (171)
Q Consensus 111 ~~dWDaVIdAE~~rRK~Led 130 (171)
.=|||.||.-|+.....+|.
T Consensus 40 ~gdWD~Lv~lE~~y~~lVe~ 59 (126)
T 3h3m_A 40 ASNWDLVLNHGQEYVCLVER 59 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred HCcHHHHHHHHHHHHHHHHH
Confidence 34899999999998887765
No 4
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=17.28 E-value=52 Score=20.98 Aligned_cols=36 Identities=11% Similarity=0.346 Sum_probs=27.4
Q ss_pred CCcCchhhh--hHHHHHhhhhhcCCCCCCCCCCeeeecCcc
Q 030789 110 GQTDWDAVI--DAEARRRKWLENSPESSSNDDPVIFDTSIV 148 (171)
Q Consensus 110 G~~dWDaVI--dAE~~rRK~Led~Pe~s~n~epv~Fdtsii 148 (171)
||..|--++ ++|..+.+++.|||.. +--||...|.+
T Consensus 6 ~K~sWPELVG~~~~~A~~~I~~e~P~v---~v~vl~~gs~v 43 (45)
T 1hym_A 6 GKSSWPHLVGVGGSVAKAIIERQNPNV---KAVILEEGTPV 43 (45)
T ss_dssp SCSBCCCCTTSCHHHHHHHHHHHCTTC---EEEEEECCSCC
T ss_pred CCCcChhhcCCcHHHHHHHHHHHCCCC---eEEEecCCCcC
Confidence 788887664 7899999999999986 23466666655
No 5
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=15.35 E-value=26 Score=26.62 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=14.5
Q ss_pred hhhhhhcCCcCchhhhhH
Q 030789 103 LKQFQKNGQTDWDAVIDA 120 (171)
Q Consensus 103 l~qF~~~G~~dWDaVIdA 120 (171)
..++..+|++||+++..+
T Consensus 42 ~~mlp~~~kldW~aL~~a 59 (125)
T 3q87_A 42 KHMFTENGGERLKSLVNS 59 (125)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCccccCHHHHHHH
Confidence 456677899999999865
No 6
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=14.94 E-value=55 Score=19.14 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=8.2
Q ss_pred HHHHhhhhhc
Q 030789 121 EARRRKWLEN 130 (171)
Q Consensus 121 E~~rRK~Led 130 (171)
|.+||-||.+
T Consensus 6 ~~rRr~wL~~ 15 (24)
T 3h3g_B 6 DLRRRFFLHH 15 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7899999864
No 7
>1bwx_A Parathyroid hormone; peptide hormone, solution structure; NMR {Homo sapiens} SCOP: j.15.1.1 PDB: 1zwf_A 1zwg_A* 2l1x_A
Probab=14.87 E-value=38 Score=21.75 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=8.1
Q ss_pred HHHHhhhhhc
Q 030789 121 EARRRKWLEN 130 (171)
Q Consensus 121 E~~rRK~Led 130 (171)
+.+||.||+.
T Consensus 17 ~~~R~~WLq~ 26 (39)
T 1bwx_A 17 SMERVEWLRK 26 (39)
T ss_dssp SHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5789999974
No 8
>1et1_A Parathyroid hormone; helical dimer, hormone/growth factor complex; 0.90A {Homo sapiens} SCOP: j.15.1.1 PDB: 1hpy_A 1zwa_A 1hph_A 1zwb_A 1zwd_A 1zwc_A 1zwe_A 1hth_A* 1fvy_A 3c4m_C*
Probab=14.50 E-value=56 Score=20.35 Aligned_cols=11 Identities=27% Similarity=0.694 Sum_probs=8.6
Q ss_pred HHHHHhhhhhc
Q 030789 120 AEARRRKWLEN 130 (171)
Q Consensus 120 AE~~rRK~Led 130 (171)
.+.+||.||..
T Consensus 16 q~~~R~~WLq~ 26 (34)
T 1et1_A 16 NSMERVEWLRK 26 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 36789999974
No 9
>2zop_A Putative uncharacterized protein TTHB164; all alpha proteins, plasmid, NPPSFA; 2.10A {Thermus thermophilus HB8}
Probab=14.44 E-value=51 Score=23.88 Aligned_cols=11 Identities=36% Similarity=0.851 Sum_probs=9.6
Q ss_pred cchHHHHHHhh
Q 030789 147 IVPWWAWIKRF 157 (171)
Q Consensus 147 iiPWWaW~kRf 157 (171)
++-++.|+|||
T Consensus 97 ~La~~~WlKRf 107 (114)
T 2zop_A 97 VLAAAEWFKRF 107 (114)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56799999998
No 10
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.40A {Enterococcus faecalis}
Probab=11.65 E-value=88 Score=25.51 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=27.6
Q ss_pred hhhcCCcCchhhhhHHHHHhhhhhcCCCCCCCCCCeee
Q 030789 106 FQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIF 143 (171)
Q Consensus 106 F~~~G~~dWDaVIdAE~~rRK~Led~Pe~s~n~epv~F 143 (171)
|.-||++.-|+-|+.|++++|..++-- .-.-+-+||
T Consensus 183 ~~~dG~i~~D~A~~~~~~~~k~~~s~~--~G~adVlV~ 218 (279)
T 1yco_A 183 ATVFGPLSLDLATSEEAVAHKRYSGPI--MGDADILVV 218 (279)
T ss_dssp CEEEEEECHHHHHCHHHHHHTTCCSSC--SSCCSEEEC
T ss_pred CEEEeeCcHHhhcCHHHHHhcCCCCcc--CCCCCEEEE
Confidence 455899999999999999999886532 334566666
Done!