Query 030789
Match_columns 171
No_of_seqs 35 out of 37
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 06:51:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030789.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030789hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2evea1 b.122.1.8 (A:2-149) Hy 34.5 4.7 0.00035 29.6 0.5 30 99-130 10-39 (148)
2 d2ar1a1 b.122.1.8 (A:7-163) Hy 21.4 12 0.00085 27.3 0.6 26 99-124 15-40 (157)
3 d2oeba1 a.70.2.1 (A:2-153) Hyp 20.3 14 0.001 26.5 0.8 11 147-157 135-145 (152)
4 d2ix0a1 b.40.4.5 (A:83-172) Ex 16.9 27 0.002 22.4 1.5 16 145-160 74-89 (90)
5 d2bkya1 d.68.6.1 (A:9-97) DNA- 16.0 31 0.0022 23.1 1.7 21 110-130 35-55 (89)
6 d1nfja_ d.68.6.1 (A:) DNA-bind 12.5 44 0.0032 22.0 1.7 21 111-131 36-56 (87)
7 d2gfna1 a.4.1.9 (A:4-80) Proba 10.2 19 0.0014 21.5 -0.8 13 117-129 1-13 (77)
8 d1rwta_ f.43.1.1 (A:) Chloroph 10.1 26 0.0019 25.6 -0.2 10 161-170 50-59 (218)
9 d1dwma_ d.40.1.1 (A:) Trypsin 10.0 67 0.0049 20.5 1.9 37 109-148 5-43 (69)
10 d1ll7a2 d.26.3.1 (A:293-354) C 9.9 28 0.0021 21.5 -0.0 23 94-116 21-44 (62)
No 1
>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229 {Pseudomonas syringae [TaxId: 317]}
Probab=34.51 E-value=4.7 Score=29.58 Aligned_cols=30 Identities=27% Similarity=0.653 Sum_probs=25.1
Q ss_pred CccchhhhhhcCCcCchhhhhHHHHHhhhhhc
Q 030789 99 GTWDLKQFQKNGQTDWDAVIDAEARRRKWLEN 130 (171)
Q Consensus 99 GtWDl~qF~~~G~~dWDaVIdAE~~rRK~Led 130 (171)
++|-+.++.++|++-||.|=+..||+ .|.+
T Consensus 10 ~~~s~~dl~~~~~~~WdGVRNyqArn--~lr~ 39 (148)
T d2evea1 10 DEFSISDLQRLGKARWDGVRNYQARN--FLRT 39 (148)
T ss_dssp TTSCHHHHHHHSEEEECCCCCHHHHH--HHHH
T ss_pred CcCCHHHHHhcCCCCccCccCHHHHH--HHHh
Confidence 47889999999999999999999864 4444
No 2
>d2ar1a1 b.122.1.8 (A:7-163) Hypothetical protein LmjF36.6870 {Leishmania major [TaxId: 5664]}
Probab=21.40 E-value=12 Score=27.28 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=23.3
Q ss_pred CccchhhhhhcCCcCchhhhhHHHHH
Q 030789 99 GTWDLKQFQKNGQTDWDAVIDAEARR 124 (171)
Q Consensus 99 GtWDl~qF~~~G~~dWDaVIdAE~~r 124 (171)
++|.+.++.++|.+-||.|=+-.|++
T Consensus 15 ~~ys~~dl~~~~~~~WdGVrN~qArn 40 (157)
T d2ar1a1 15 HKFSIDDLAKQKTSPWDGVRNYAARN 40 (157)
T ss_dssp TTSCHHHHHHHSEEECCCCCCHHHHH
T ss_pred CcCCHHHHhhhCCCCccCcchHHHHH
Confidence 47888999999999999999999865
No 3
>d2oeba1 a.70.2.1 (A:2-153) Hypothetical protein AF1862 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.29 E-value=14 Score=26.48 Aligned_cols=11 Identities=36% Similarity=0.900 Sum_probs=10.0
Q ss_pred cchHHHHHHhh
Q 030789 147 IVPWWAWIKRF 157 (171)
Q Consensus 147 iiPWWaW~kRf 157 (171)
++-++.|+|||
T Consensus 135 ~La~l~WlKRf 145 (152)
T d2oeba1 135 ALSILNWIKKF 145 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67899999999
No 4
>d2ix0a1 b.40.4.5 (A:83-172) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=16.89 E-value=27 Score=22.42 Aligned_cols=16 Identities=38% Similarity=1.010 Sum_probs=13.4
Q ss_pred cCcchHHHHHHhhcCc
Q 030789 145 TSIVPWWAWIKRFHLP 160 (171)
Q Consensus 145 tsiiPWWaW~kRfhLP 160 (171)
.-.++||+=|.||+||
T Consensus 74 Dp~~e~~~~la~~~Lp 89 (90)
T d2ix0a1 74 DHFVPWWVTLARHNLE 89 (90)
T ss_dssp CTTHHHHHHHHHTTCC
T ss_pred CCCCcHHHHHHHcCCC
Confidence 3468999999999998
No 5
>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]}
Probab=16.01 E-value=31 Score=23.11 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=16.3
Q ss_pred CCcCchhhhhHHHHHhhhhhc
Q 030789 110 GQTDWDAVIDAEARRRKWLEN 130 (171)
Q Consensus 110 G~~dWDaVIdAE~~rRK~Led 130 (171)
|+.==.||-.||+.||++|.+
T Consensus 35 G~aIskAVdVaEiik~R~l~~ 55 (89)
T d2bkya1 35 GRAISKAVDTVEIVRNRFLPD 55 (89)
T ss_dssp TTHHHHHHHHHHHHHHHTSTT
T ss_pred hhhhHHHHHHHHHHHHhcccC
Confidence 344446888999999999875
No 6
>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=12.53 E-value=44 Score=21.97 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=16.1
Q ss_pred CcCchhhhhHHHHHhhhhhcC
Q 030789 111 QTDWDAVIDAEARRRKWLENS 131 (171)
Q Consensus 111 ~~dWDaVIdAE~~rRK~Led~ 131 (171)
+.==.||-.||+.||+++++.
T Consensus 36 ~aIs~AVdVaEi~k~r~~~~~ 56 (87)
T d1nfja_ 36 RAISRAVDVAEIVRNRFMPGV 56 (87)
T ss_dssp THHHHHHHHHHHHHHHTCTTC
T ss_pred hHHHHHHHHHHHHHHhccCCc
Confidence 333468899999999988764
No 7
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=10.17 E-value=19 Score=21.50 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=9.3
Q ss_pred hhhHHHHHhhhhh
Q 030789 117 VIDAEARRRKWLE 129 (171)
Q Consensus 117 VIdAE~~rRK~Le 129 (171)
|+|.|.+|+++|+
T Consensus 1 ivd~~~~r~~Il~ 13 (77)
T d2gfna1 1 IVDHDERRRALAD 13 (77)
T ss_dssp CCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4677777887775
No 8
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=10.08 E-value=26 Score=25.58 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=9.2
Q ss_pred hhhhhccccC
Q 030789 161 EAELLNGAAL 170 (171)
Q Consensus 161 EAE~lNGRAA 170 (171)
|||+.+||-|
T Consensus 50 eaELKHGR~A 59 (218)
T d1rwta_ 50 ELEVIHCRWA 59 (218)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhceeh
Confidence 9999999976
No 9
>d1dwma_ d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum usitatissimum) [TaxId: 4006]}
Probab=10.03 E-value=67 Score=20.52 Aligned_cols=37 Identities=11% Similarity=0.244 Sum_probs=27.5
Q ss_pred cCCcCchhhh--hHHHHHhhhhhcCCCCCCCCCCeeeecCcc
Q 030789 109 NGQTDWDAVI--DAEARRRKWLENSPESSSNDDPVIFDTSIV 148 (171)
Q Consensus 109 ~G~~dWDaVI--dAE~~rRK~Led~Pe~s~n~epv~Fdtsii 148 (171)
.||..|--++ .+|....+.++|||.... -||.+-|.+
T Consensus 5 ~gK~sWPELVG~~~~~A~~~I~~enp~v~v---~v~~~gs~v 43 (69)
T d1dwma_ 5 PGKNAWPELVGKSGNMAAATVERENRNVHA---IVLKEGSAM 43 (69)
T ss_dssp SSCSBCGGGTTSBHHHHHHHHHHHCTTCEE---EEEETTCCC
T ss_pred CCCCcCHHHCCCCHHHHHHHHHHHCCCceE---EEeeCCCcc
Confidence 3889998775 789999999999998632 255555554
No 10
>d1ll7a2 d.26.3.1 (A:293-354) Chitinase 1 {Fungus (Coccidioides immitis) [TaxId: 5501]}
Probab=9.94 E-value=28 Score=21.51 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=16.4
Q ss_pred CccccCccchhhhhh-cCCcCchh
Q 030789 94 PKWVNGTWDLKQFQK-NGQTDWDA 116 (171)
Q Consensus 94 ~RW~~GtWDl~qF~~-~G~~dWDa 116 (171)
.-|.+|.||.++..+ ..+.-||-
T Consensus 21 Gt~e~Gv~dYk~L~~~g~~~~~D~ 44 (62)
T d1ll7a2 21 GSWENGVWDYKDMPQQGAQVTELE 44 (62)
T ss_dssp BSSSTTEEEGGGCSCTTCEEEEET
T ss_pred CcccccEEEHHHCCCCCceEEEcC
Confidence 447789999999844 45566664
Done!