BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030790
(171 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|51971543|dbj|BAD44436.1| putative ribosome recycling factor [Arabidopsis thaliana]
Length = 267
Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 140/171 (81%), Positives = 163/171 (95%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEAAI ALSR+LTKLRTGRA+PGMLDHI+VETGGVKMPLNHLA+VSVLD KTLS+NPYDP
Sbjct: 97 MEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDP 156
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+T+KELE AIV+SPLGLNP++DGQRL+A+IPALTKEHIQAMCK+V K+SE VKQSIRR+R
Sbjct: 157 DTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRAR 216
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
QKALD +KKAGSSLPKD++KRLEKE+DELTKK+VKSA+D+CK+KEKEI E
Sbjct: 217 QKALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEITEA 267
>gi|42563413|ref|NP_186829.3| ribosome recycling factor [Arabidopsis thaliana]
gi|34146850|gb|AAQ62433.1| At3g01800 [Arabidopsis thaliana]
gi|51970776|dbj|BAD44080.1| putative ribosome recycling factor [Arabidopsis thaliana]
gi|62319213|dbj|BAD94407.1| putative ribosome recycling factor [Arabidopsis thaliana]
gi|332640195|gb|AEE73716.1| ribosome recycling factor [Arabidopsis thaliana]
Length = 267
Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 140/171 (81%), Positives = 163/171 (95%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEAAI ALSR+LTKLRTGRA+PGMLDHI+VETGGVKMPLNHLA+VSVLD KTLS+NPYDP
Sbjct: 97 MEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDP 156
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+T+KELE AIV+SPLGLNP++DGQRL+A+IPALTKEHIQAMCK+V K+SE VKQSIRR+R
Sbjct: 157 DTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRAR 216
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
QKALD +KKAGSSLPKD++KRLEKE+DELTKK+VKSA+D+CK+KEKEI E
Sbjct: 217 QKALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEITEA 267
>gi|225452150|ref|XP_002263449.1| PREDICTED: ribosome-recycling factor [Vitis vinifera]
gi|296090242|emb|CBI40061.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 285 bits (728), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 141/171 (82%), Positives = 157/171 (91%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+AA+VALSREL+KLRTGRAS GMLDHIIVETGGVKMPL+ LAVVSVLD KTLS+ PYD
Sbjct: 88 MDAAVVALSRELSKLRTGRASAGMLDHIIVETGGVKMPLSRLAVVSVLDPKTLSVTPYDL 147
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ LK+LE AIVSSPLGLNP+ DG+RLIA IP LTKEHIQAMCKVVAK+ EDVKQSIRR+R
Sbjct: 148 DALKQLENAIVSSPLGLNPKADGERLIAVIPPLTKEHIQAMCKVVAKSCEDVKQSIRRAR 207
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
QKALDM+KKAGSSLPKD KRLEKE+DELTKK+VKSA+D+CKAKEKEI EG
Sbjct: 208 QKALDMIKKAGSSLPKDVAKRLEKEVDELTKKFVKSAEDMCKAKEKEIAEG 258
>gi|147840489|emb|CAN68423.1| hypothetical protein VITISV_018268 [Vitis vinifera]
Length = 258
Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 140/171 (81%), Positives = 156/171 (91%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+AA+VALSREL+KLRTGRAS GMLDHIIVETGGVKMPL+ LAVVSVLD KTLS+ PYD
Sbjct: 88 MDAAVVALSRELSKLRTGRASAGMLDHIIVETGGVKMPLSRLAVVSVLDPKTLSVTPYDL 147
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ LK+LE AIVSSPLGLNP+ DG+RLIA IP LTKEHIQAMCKVVAK+ EDVKQSIRR+R
Sbjct: 148 DALKQLENAIVSSPLGLNPKADGERLIAVIPPLTKEHIQAMCKVVAKSCEDVKQSIRRAR 207
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
QKALD +KKAGSSLPKD KRLEKE+DELTKK+VKSA+D+CKAKEKEI EG
Sbjct: 208 QKALDXIKKAGSSLPKDVAKRLEKEVDELTKKFVKSAEDMCKAKEKEIAEG 258
>gi|255536967|ref|XP_002509550.1| ribosome recycling factor, putative [Ricinus communis]
gi|223549449|gb|EEF50937.1| ribosome recycling factor, putative [Ricinus communis]
Length = 262
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/171 (80%), Positives = 155/171 (90%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEAAIV+LSRELTKLRTGRAS GMLDHIIVET GVKMPLN LAVV+V+D KTLS+NPYDP
Sbjct: 92 MEAAIVSLSRELTKLRTGRASAGMLDHIIVETDGVKMPLNRLAVVAVMDPKTLSVNPYDP 151
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + LE AIVSSPLGLNPRVDG+RLIA+IP LTKEH+QAMCKVV K+ E+VKQS+RR+R
Sbjct: 152 NMVSALEKAIVSSPLGLNPRVDGERLIASIPPLTKEHMQAMCKVVGKSCEEVKQSVRRAR 211
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
QKALD +KKAGS+L KD +KRLEKE+DELTKK+VKSA+DICKAKEKEI G
Sbjct: 212 QKALDTIKKAGSNLSKDDVKRLEKEVDELTKKFVKSAEDICKAKEKEITVG 262
>gi|224055693|ref|XP_002298606.1| predicted protein [Populus trichocarpa]
gi|222845864|gb|EEE83411.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 274 bits (701), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 132/171 (77%), Positives = 151/171 (88%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+AA+VALSREL KLRTGRAS GMLDHIIVET GVK+PLN AVVSV+D+KTLS+NPYDP
Sbjct: 103 MDAAVVALSRELQKLRTGRASAGMLDHIIVETDGVKLPLNRSAVVSVMDAKTLSVNPYDP 162
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
NTLK+LE AIVSSPLGLNP+ DG RLIAAIP LTKEH QAMCKVVAK+ ED +QSIRR+R
Sbjct: 163 NTLKQLENAIVSSPLGLNPQRDGDRLIAAIPPLTKEHTQAMCKVVAKSCEDCRQSIRRAR 222
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
QKA+D +KKAGSS PKD K+LEKEI+E+TKK+VKSA+D+C KEKEI G
Sbjct: 223 QKAMDTVKKAGSSFPKDDAKKLEKEIEEMTKKFVKSAEDMCNNKEKEIKTG 273
>gi|6091742|gb|AAF03454.1|AC010797_30 putative ribosome recycling factor [Arabidopsis thaliana]
Length = 284
Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/189 (70%), Positives = 158/189 (83%), Gaps = 18/189 (9%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEAAI ALSR+LTKLRTGRA+PGMLDHI+VETGGVKMPLNHLA+VSVLD KTLS+NPYDP
Sbjct: 96 MEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDP 155
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKE------------------HIQAMC 102
+T+KELE AIV+SPLGLNP++DGQRL+A+IPA +QAMC
Sbjct: 156 DTVKELEKAIVASPLGLNPKLDGQRLVASIPAYESSSLSNFISLRLSLDPIYLYELQAMC 215
Query: 103 KVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICK 162
K+V K+SE VKQSIRR+RQKALD +KKAGSSLPKD++KRLEKE+DELTKK+VKSA+D+CK
Sbjct: 216 KIVTKSSEVVKQSIRRARQKALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMCK 275
Query: 163 AKEKEINEG 171
+KEKEI E
Sbjct: 276 SKEKEITEA 284
>gi|449495268|ref|XP_004159783.1| PREDICTED: ribosome-recycling factor-like [Cucumis sativus]
Length = 263
Score = 271 bits (692), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 130/171 (76%), Positives = 150/171 (87%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEA+IVALS EL+KLRTGRASPGMLDHIIVET GVK+PLN +A VSVLDSKTLSINPYDP
Sbjct: 93 MEASIVALSGELSKLRTGRASPGMLDHIIVETSGVKLPLNQIAAVSVLDSKTLSINPYDP 152
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TLK LE AI+SSPLG+ PRVDG+RLIA IP LTKEHIQAMCK+V K ED +QSIRR+R
Sbjct: 153 STLKNLETAIISSPLGVAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRAR 212
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
QKA+D +KK SS PKD +KRLEKE+DELTKK++KSA+++CK KEKEI G
Sbjct: 213 QKAMDTVKKISSSYPKDDIKRLEKEVDELTKKFIKSAEELCKGKEKEITGG 263
>gi|363807224|ref|NP_001242099.1| uncharacterized protein LOC100814905 [Glycine max]
gi|255644392|gb|ACU22701.1| unknown [Glycine max]
Length = 261
Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/171 (76%), Positives = 153/171 (89%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEAA+ ALS EL+KLRTGRASPGMLDHIIVET G+KMPLN LAVVSVLD KTLS+NPYDP
Sbjct: 91 MEAAMAALSTELSKLRTGRASPGMLDHIIVETSGLKMPLNRLAVVSVLDPKTLSVNPYDP 150
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
TLK+LE AIVSSPLGLNP+ DG+RLIA IP LTKEH+QAM K+VAK+ ED +QSIRR+R
Sbjct: 151 ETLKQLENAIVSSPLGLNPKSDGERLIAVIPPLTKEHMQAMTKLVAKSCEDARQSIRRAR 210
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
Q+A+D +KK SSLPKD +KRLEKE+D+LTKK++KSA DICKAKEKEI++G
Sbjct: 211 QQAMDAIKKLYSSLPKDDIKRLEKEVDDLTKKFIKSAKDICKAKEKEISQG 261
>gi|449441416|ref|XP_004138478.1| PREDICTED: ribosome-recycling factor-like [Cucumis sativus]
Length = 263
Score = 268 bits (684), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 129/171 (75%), Positives = 149/171 (87%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEA+IVALS EL+KLRTGRASPGMLDHIIVET GVK+PLN +A VSVLDSKTLSINPYDP
Sbjct: 93 MEASIVALSGELSKLRTGRASPGMLDHIIVETSGVKLPLNQIAAVSVLDSKTLSINPYDP 152
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TLK LE AI+SSPLG+ PRVDG+RLIA IP LTKEHIQAMCK+V K ED +QSIRR+
Sbjct: 153 STLKNLETAIISSPLGVAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRAP 212
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
QKA+D +KK SS PKD +KRLEKE+DELTKK++KSA+++CK KEKEI G
Sbjct: 213 QKAMDTVKKISSSYPKDDIKRLEKEVDELTKKFIKSAEELCKGKEKEITGG 263
>gi|357515267|ref|XP_003627922.1| Ribosome-recycling factor [Medicago truncatula]
gi|355521944|gb|AET02398.1| Ribosome-recycling factor [Medicago truncatula]
Length = 262
Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 127/171 (74%), Positives = 152/171 (88%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEAA+ ALS EL+KLRTGRAS GMLDHIIVETGGVKMPL+ +A+VSVLD KTLS+NPYDP
Sbjct: 92 MEAAMTALSVELSKLRTGRASAGMLDHIIVETGGVKMPLSRIALVSVLDPKTLSVNPYDP 151
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
TLK+LE AIVSSPLGLNPR DG+RLIA IP LTKEH+QAM K+V K+ ED +QSIRR+R
Sbjct: 152 ETLKQLENAIVSSPLGLNPRTDGERLIAVIPPLTKEHMQAMNKLVTKSCEDTRQSIRRAR 211
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
QKA+D +KK S LPKD +KRLEKE+D+LTKK++K+A+D+CKAKEKEI++G
Sbjct: 212 QKAMDAIKKLNSILPKDDLKRLEKEVDDLTKKFIKTAEDVCKAKEKEISQG 262
>gi|388520947|gb|AFK48535.1| unknown [Medicago truncatula]
Length = 263
Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 126/171 (73%), Positives = 151/171 (88%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEAA+ ALS EL+KLRTGRA+ GMLDHIIVETGGVKMPL+ +A+VSVLD KTLS+NPYDP
Sbjct: 93 MEAAMTALSVELSKLRTGRAAAGMLDHIIVETGGVKMPLSRIALVSVLDPKTLSVNPYDP 152
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
TLK+LE AIVSSPLGLNPR DG+RLIA IP LTKEH+QAM K+V K ED +QSIRR+R
Sbjct: 153 ETLKQLENAIVSSPLGLNPRTDGERLIAVIPPLTKEHMQAMNKLVTKPCEDTRQSIRRAR 212
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
QKA+D +KK S LPKD +KRLEKE+D+LTKK++K+A+D+CKAKEKEI++G
Sbjct: 213 QKAMDAIKKLNSILPKDDLKRLEKEVDDLTKKFIKTAEDVCKAKEKEISQG 263
>gi|326532442|dbj|BAK05150.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 260
Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 123/169 (72%), Positives = 150/169 (88%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+VALSREL+KLRTGRASPGMLDHI+VETG VK+ L+ +AVVSVLDS TLS+ PYDP
Sbjct: 90 MDTAVVALSRELSKLRTGRASPGMLDHIMVETGDVKVGLSRIAVVSVLDSHTLSVMPYDP 149
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
NT+K +E AI SSPLG+NP DG R+IAA+P LTKE +QAMCKVV K++ED KQSIRR+R
Sbjct: 150 NTMKSIENAIASSPLGINPTPDGSRIIAAVPPLTKETMQAMCKVVTKSAEDFKQSIRRAR 209
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
QKALD +KK+ SS+PKD +KRLEKE++ELTKK++KSADD+CKAKEKEI+
Sbjct: 210 QKALDTIKKSSSSMPKDDIKRLEKEVEELTKKFIKSADDMCKAKEKEIS 258
>gi|125590832|gb|EAZ31182.1| hypothetical protein OsJ_15282 [Oryza sativa Japonica Group]
Length = 260
Score = 258 bits (660), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 123/169 (72%), Positives = 151/169 (89%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEAA+VALSREL+KLRTGRASPGMLDHI+VET GVK+ LN LAVVSVLD+ TLS+ PYDP
Sbjct: 90 MEAAVVALSRELSKLRTGRASPGMLDHIMVETTGVKVALNRLAVVSVLDAHTLSVMPYDP 149
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++K +E AI+SSPLG+NP DG R+IA IP LTKE+IQA+CKVV K++ED KQSIRR+R
Sbjct: 150 SSMKSIEHAIISSPLGINPTPDGNRIIANIPPLTKENIQALCKVVTKSAEDFKQSIRRAR 209
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
QKALD +KK+ S +PKD +KRLEKE++ELTKK++KSADD+CKAKEKEI+
Sbjct: 210 QKALDTIKKSASGMPKDDVKRLEKEVEELTKKFIKSADDMCKAKEKEIS 258
>gi|115459126|ref|NP_001053163.1| Os04g0490400 [Oryza sativa Japonica Group]
gi|21740669|emb|CAD41132.1| OSJNBa0084K20.10 [Oryza sativa Japonica Group]
gi|38347444|emb|CAE02486.2| OSJNBa0076N16.8 [Oryza sativa Japonica Group]
gi|113564734|dbj|BAF15077.1| Os04g0490400 [Oryza sativa Japonica Group]
gi|125548818|gb|EAY94640.1| hypothetical protein OsI_16419 [Oryza sativa Indica Group]
gi|215704152|dbj|BAG92992.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 260
Score = 258 bits (660), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 123/169 (72%), Positives = 151/169 (89%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEAA+VALSREL+KLRTGRASPGMLDHI+VET GVK+ LN LAVVSVLD+ TLS+ PYDP
Sbjct: 90 MEAAVVALSRELSKLRTGRASPGMLDHIMVETTGVKVALNRLAVVSVLDAHTLSVMPYDP 149
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++K +E AI+SSPLG+NP DG R+IA IP LTKE+IQA+CKVV K++ED KQSIRR+R
Sbjct: 150 SSMKSIEHAIISSPLGINPTPDGNRIIANIPPLTKENIQALCKVVTKSAEDFKQSIRRAR 209
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
QKALD +KK+ S +PKD +KRLEKE++ELTKK++KSADD+CKAKEKEI+
Sbjct: 210 QKALDTIKKSASGMPKDDVKRLEKEVEELTKKFIKSADDMCKAKEKEIS 258
>gi|242076314|ref|XP_002448093.1| hypothetical protein SORBIDRAFT_06g020970 [Sorghum bicolor]
gi|241939276|gb|EES12421.1| hypothetical protein SORBIDRAFT_06g020970 [Sorghum bicolor]
Length = 258
Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 119/169 (70%), Positives = 151/169 (89%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+AA++ALSREL+KLRTGRA+PGMLDHI+VE GVK+ LN +AVVSVLD+ TLS+ PYDP
Sbjct: 88 MDAAVIALSRELSKLRTGRATPGMLDHIMVENAGVKVALNRIAVVSVLDAHTLSVMPYDP 147
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++K +E AI+SSPLG+NP DG R+IAAIP LTKE+IQA+CKVV K++ED KQSIRR+R
Sbjct: 148 TSMKSIEHAIISSPLGINPTPDGNRIIAAIPPLTKENIQALCKVVTKSAEDFKQSIRRAR 207
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
QKALD +KK+ SS+PKD +KR+EKE++ELTKK++KSADD+CKAKEKEI+
Sbjct: 208 QKALDTIKKSASSMPKDDVKRIEKEVEELTKKFIKSADDMCKAKEKEIS 256
>gi|357164365|ref|XP_003580029.1| PREDICTED: ribosome-recycling factor-like [Brachypodium distachyon]
Length = 261
Score = 254 bits (650), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 120/169 (71%), Positives = 149/169 (88%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+VALSREL+KLRTGRASPGMLDHI+VET K+ LN +AVVSVLD+ TLS+ PYDP
Sbjct: 91 METAVVALSRELSKLRTGRASPGMLDHIMVETADTKVGLNRIAVVSVLDAHTLSVMPYDP 150
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++K +E AIVSSPLG+NP DG R+IA IP LTKE+IQA+CKVV K++ED KQSIRR+R
Sbjct: 151 SSMKSIENAIVSSPLGINPTPDGNRIIAPIPPLTKENIQALCKVVTKSAEDFKQSIRRAR 210
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
QKALD +KK+ SS+PKD +KRLEKE++E+TKK++KSADD+CKAKEKEI+
Sbjct: 211 QKALDTIKKSSSSMPKDDIKRLEKEVEEMTKKFIKSADDMCKAKEKEIS 259
>gi|226508144|ref|NP_001149112.1| LOC100282734 [Zea mays]
gi|195624822|gb|ACG34241.1| ribosome recycling factor [Zea mays]
gi|238015350|gb|ACR38710.1| unknown [Zea mays]
gi|413918761|gb|AFW58693.1| Ribosome recycling factor [Zea mays]
Length = 259
Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 118/169 (69%), Positives = 150/169 (88%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+AA++ALSREL+KLRTGRA+PGMLDHI+VE VK+ LN +AVVSVLD+ TLS+ PYDP
Sbjct: 89 MDAAVIALSRELSKLRTGRATPGMLDHIMVENADVKVALNRIAVVSVLDAHTLSVMPYDP 148
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++K +E AI+SSPLG+NP DG R+IAAIP LTKE+IQA+CKVV K++ED KQSIRR+R
Sbjct: 149 TSMKSIEHAIISSPLGINPTPDGNRIIAAIPPLTKENIQALCKVVTKSAEDFKQSIRRAR 208
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
QKALD +KK+ SS+PKD +KR+EKEI+ELTKK++KS+DD+CKAKEKEI+
Sbjct: 209 QKALDTIKKSASSMPKDDVKRIEKEIEELTKKFIKSSDDMCKAKEKEIS 257
>gi|116787688|gb|ABK24606.1| unknown [Picea sitchensis]
Length = 269
Score = 244 bits (623), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 119/168 (70%), Positives = 146/168 (86%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+A I ALSREL+KLRTGRAS GMLDHII+E+ GV+ PL+ +A +SVLDS+TLS+ PYD
Sbjct: 99 MQAGIDALSRELSKLRTGRASAGMLDHIIIESDGVRTPLSRIAAISVLDSQTLSVTPYDL 158
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+K++E AIVSSPLGLNP ++GQRL+ IPALTKEH QAM K+V+K SEDVKQSIRR+R
Sbjct: 159 EAIKDVERAIVSSPLGLNPTLEGQRLVVPIPALTKEHTQAMSKLVSKASEDVKQSIRRAR 218
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
QKALD +KKA SS+ KD +KRLEKEID+LTKK+VK+A+D+CKAKEKEI
Sbjct: 219 QKALDSIKKAVSSMSKDDVKRLEKEIDDLTKKFVKTAEDMCKAKEKEI 266
>gi|148910289|gb|ABR18224.1| unknown [Picea sitchensis]
Length = 269
Score = 244 bits (623), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 119/168 (70%), Positives = 146/168 (86%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+A I ALSREL+KLRTGRAS GMLDHII+E+ GV+ PL+ +A VSVLDS+TLS+ PYD
Sbjct: 99 MQAGIDALSRELSKLRTGRASAGMLDHIIIESDGVRTPLSRIAAVSVLDSQTLSVTPYDL 158
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++E AIVSSPLGLNP ++GQRL+ IPALTKEH QAM K+V+K SEDVKQSIRR+R
Sbjct: 159 DAIKDVERAIVSSPLGLNPTLEGQRLVVPIPALTKEHTQAMSKLVSKASEDVKQSIRRAR 218
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
QKALD +KKA SS+ KD +KRLEKEID+LTKK+VK+A+D+CK KEKEI
Sbjct: 219 QKALDSIKKAVSSMSKDDVKRLEKEIDDLTKKFVKTAEDMCKTKEKEI 266
>gi|297832754|ref|XP_002884259.1| hypothetical protein ARALYDRAFT_317013 [Arabidopsis lyrata subsp.
lyrata]
gi|297330099|gb|EFH60518.1| hypothetical protein ARALYDRAFT_317013 [Arabidopsis lyrata subsp.
lyrata]
Length = 238
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/170 (68%), Positives = 138/170 (81%), Gaps = 24/170 (14%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEAAI ALSR+LTKLRTGRA+PGMLDHI+VETGGVKMPLNHLA+VSVLD KTLS+NPYDP
Sbjct: 92 MEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDP 151
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+T+KELE AIV+SPLGLNP++DGQRL+A+IPA D+
Sbjct: 152 DTVKELEKAIVASPLGLNPKLDGQRLVASIPA------------------DIFFG----- 188
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ALD +KKAGSSLPKD++KRLEKE+DELTKK+VKSA+D+CK+KEKEI E
Sbjct: 189 -QALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEITE 237
>gi|168031675|ref|XP_001768346.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680524|gb|EDQ66960.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 192
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/168 (56%), Positives = 129/168 (76%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEAA+ ALS EL+KLRTGRA+PGMLDH+ V + GV+ PL+H+A VSV + +TL++ PYD
Sbjct: 23 MEAALNALSVELSKLRTGRATPGMLDHVNVMSHGVQTPLSHVAAVSVSNLETLTVMPYDT 82
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +KE+E AI +SPL LNP +G+ L IP LTKEHIQ M K+V K E K S+RR+R
Sbjct: 83 SMVKEVEKAIRNSPLKLNPMAEGEVLRVPIPKLTKEHIQTMSKLVGKAGETAKLSVRRAR 142
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D++ K G S KD++KR EKE++++TKKYVKS ++ CK+KEKEI
Sbjct: 143 KDAMDIISKGGYS--KDEVKRFEKEVEDVTKKYVKSVEEACKSKEKEI 188
>gi|357164354|ref|XP_003580026.1| PREDICTED: ribosome-recycling factor-like isoform 1 [Brachypodium
distachyon]
Length = 262
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 127/175 (72%), Gaps = 6/175 (3%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + LS L+ L TGRAS ML+H++VET VK+ L +A+V+VLD+ TLS+ PYD
Sbjct: 86 MKTICMMLSHMLSNLPTGRASIDMLNHMMVETADVKVKLIRMALVTVLDAHTLSVIPYDT 145
Query: 61 NTLKELECAIVSSPLGLNPRVDG------QRLIAAIPALTKEHIQAMCKVVAKTSEDVKQ 114
+T+ +E AI SSPLG+NPR G R+I AIP LTKE+ QA+CKVV +ED KQ
Sbjct: 146 STMYSIENAIASSPLGINPRRAGNWIMARHRIIVAIPPLTKENTQALCKVVTTAAEDFKQ 205
Query: 115 SIRRSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
IR +RQ ALD + K+ SS+PKD +KRLEKE++E+TKK++K D +CKAKE++I+
Sbjct: 206 KIREARQMALDAINKSSSSMPKDDIKRLEKEVEEITKKFIKMTDVMCKAKEEKIS 260
>gi|357164357|ref|XP_003580027.1| PREDICTED: ribosome-recycling factor-like isoform 2 [Brachypodium
distachyon]
Length = 279
Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 127/175 (72%), Gaps = 6/175 (3%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + LS L+ L TGRAS ML+H++VET VK+ L +A+V+VLD+ TLS+ PYD
Sbjct: 103 MKTICMMLSHMLSNLPTGRASIDMLNHMMVETADVKVKLIRMALVTVLDAHTLSVIPYDT 162
Query: 61 NTLKELECAIVSSPLGLNPRVDG------QRLIAAIPALTKEHIQAMCKVVAKTSEDVKQ 114
+T+ +E AI SSPLG+NPR G R+I AIP LTKE+ QA+CKVV +ED KQ
Sbjct: 163 STMYSIENAIASSPLGINPRRAGNWIMARHRIIVAIPPLTKENTQALCKVVTTAAEDFKQ 222
Query: 115 SIRRSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
IR +RQ ALD + K+ SS+PKD +KRLEKE++E+TKK++K D +CKAKE++I+
Sbjct: 223 KIREARQMALDAINKSSSSMPKDDIKRLEKEVEEITKKFIKMTDVMCKAKEEKIS 277
>gi|217072808|gb|ACJ84764.1| unknown [Medicago truncatula]
Length = 206
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/114 (77%), Positives = 100/114 (87%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEAA+ ALS EL+KLRTGRAS GMLDHIIVETGGVKMPL+ +A+VSVLD KTLS+NPYDP
Sbjct: 93 MEAAMTALSVELSKLRTGRASAGMLDHIIVETGGVKMPLSRIALVSVLDPKTLSVNPYDP 152
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQ 114
TLK+LE AIVSSPLGLNPR DG+RLIA IP LTKEH+QAM K+V K+ ED +Q
Sbjct: 153 ETLKQLENAIVSSPLGLNPRTDGERLIAVIPPLTKEHMQAMNKLVTKSCEDTRQ 206
>gi|95928705|ref|ZP_01311451.1| ribosome recycling factor [Desulfuromonas acetoxidans DSM 684]
gi|95135050|gb|EAT16703.1| ribosome recycling factor [Desulfuromonas acetoxidans DSM 684]
Length = 185
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 108/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI AL REL+K+RTGRAS +LD + V+ G PLN + +SV +++ ++I P++
Sbjct: 13 MDGAIDALKRELSKVRTGRASVSLLDEVCVDYYGTPTPLNQVGTLSVPEARLITIQPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L E+E AI S LGL P DG + +IP LT+E + M K+V SE+ K SIR SR
Sbjct: 73 NLLPEIEKAIFKSDLGLTPSSDGDLIRISIPPLTEERRKEMVKLVKSKSEETKISIRSSR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D +KR EKE+ +LT KYV+ DDI KEKE+ E
Sbjct: 133 RDGNDALKKLEKDKEITEDDLKRSEKEMQDLTDKYVQKCDDIVAEKEKELME 184
>gi|333370999|ref|ZP_08462967.1| ribosome recycling factor [Desmospora sp. 8437]
gi|332976811|gb|EGK13639.1| ribosome recycling factor [Desmospora sp. 8437]
Length = 185
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI AL REL +R GRA+P +LD + VE G +MPLN LA +S + + L + P+D
Sbjct: 13 MEKAIQALKRELASIRAGRATPSLLDKVTVECYGSEMPLNQLANISTPEPRLLVVQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TL ++E AI+ S LGL P DG + IPALT+E + KVV KT E+ K +IR R
Sbjct: 73 STLGDVERAILKSDLGLTPNNDGNLIRITIPALTEERRGELVKVVKKTGEEAKVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D MKK L +D+ +R + EI +LT ++++ D + + KEKEI E
Sbjct: 133 RDANDEMKKLEKKGELSEDEARRGQDEIQKLTDRFIQETDKVVETKEKEIME 184
>gi|298529658|ref|ZP_07017061.1| ribosome recycling factor [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511094|gb|EFI34997.1| ribosome recycling factor [Desulfonatronospira thiodismutans
ASO3-1]
Length = 184
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 108/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI +L ++L KLRTGRAS G++D I VE G PLN LA +S+ DS+T++I P+D
Sbjct: 12 MDKAIASLDKDLAKLRTGRASVGLVDGITVEYYGTMTPLNQLASISIPDSRTIAIQPWDR 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N +E AI+ S LGLNP DG+ + IP LT+E + + K+ K SED K ++R R
Sbjct: 72 NVFSGIEKAIMKSDLGLNPVSDGKIIRINIPPLTEERRKDLVKMAKKYSEDAKVALRNVR 131
Query: 121 QKALDMMKKAGS--SLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A D +KK + L +D+M + +E+ ++T YV D I KEKEI E
Sbjct: 132 REANDTLKKMKNDKDLTEDEMHKGHEEVQKITDSYVSKVDRILADKEKEIME 183
>gi|255071971|ref|XP_002499660.1| ribosome recycling factor [Micromonas sp. RCC299]
gi|226514922|gb|ACO60918.1| ribosome recycling factor [Micromonas sp. RCC299]
Length = 299
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 105/168 (62%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME+AI AL R+L KLRTGRASPGML++++V+ G PL HL V+ + +TL++ YD
Sbjct: 131 MESAIEALERDLGKLRTGRASPGMLENLVVQAYGDHTPLQHLGSVTARNPQTLAVMLYDA 190
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + AI SPLG NPR DG L+ +P + + + + K+ AK E K S+R +R
Sbjct: 191 SLKAAVAAAIRDSPLGFNPREDGDTLVVPVPEMNADVKREVAKMAAKAGETAKISVRNAR 250
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+K +D +K+A +P+D+ KR EKE+ + +VK D+ AKEK I
Sbjct: 251 KKGMDAIKRA--KMPEDEAKRAEKEVQKSHDAFVKRCQDLTVAKEKAI 296
>gi|376294801|ref|YP_005166031.1| ribosome recycling factor [Desulfovibrio desulfuricans ND132]
gi|323457362|gb|EGB13227.1| ribosome recycling factor [Desulfovibrio desulfuricans ND132]
Length = 184
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL ++ +KLRTGRA+ ++D I+V+ G P++ L+ VSV DSKT++I P+D
Sbjct: 12 MSGAITALDKDFSKLRTGRATTALVDSILVDYYGTPTPISQLSSVSVPDSKTITIQPWDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+E AI +S LGLNP DG+ + +IP LT+E + + KV K +ED K +IR R
Sbjct: 72 GAFGSVEKAIQTSDLGLNPVNDGKIIRISIPPLTEERRKELVKVAKKYTEDAKIAIRNVR 131
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D +R E ++ ++T YVK AD++ AKEKEI E
Sbjct: 132 RDMNDALKKMEKDKEISEDDQRRSEADVQKMTDDYVKKADEVMAAKEKEILE 183
>gi|15614987|ref|NP_243290.1| ribosome recycling factor [Bacillus halodurans C-125]
gi|14195173|sp|Q9KA66.3|RRF_BACHD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|10175044|dbj|BAB06143.1| ribosome recycling factor [Bacillus halodurans C-125]
Length = 185
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 108/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A AL REL KLR GRA+P MLD I VE G + PLN LA +SV +++ L I P+D
Sbjct: 13 MTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLLVIQPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++ ++E AI S LGL P DG + IP LT+E + + K+V K++E+ K ++R R
Sbjct: 73 SSISDIERAIQKSDLGLTPSNDGTVIRITIPPLTEERRRDLTKLVKKSAEEAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK L +D ++R+ +++ +LT KY++ D +AKEKEI E
Sbjct: 133 RDANDDLKKRQKDGELTEDDLRRVTEDVQKLTDKYIEQIDQKAEAKEKEIME 184
>gi|347734079|ref|ZP_08867131.1| ribosome recycling factor [Desulfovibrio sp. A2]
gi|347517171|gb|EGY24364.1| ribosome recycling factor [Desulfovibrio sp. A2]
Length = 184
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 110/172 (63%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ AL RE KLRTGRAS ++D+I V+ G P++ LA VSV DS+TL+I P+D
Sbjct: 12 MEKALGALDREFAKLRTGRASTSLVDNIKVDYYGTPTPISQLASVSVPDSRTLTIQPWDR 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+ S LGLNP DG+ + +IP LT+E + + KV K +E+ K ++R R
Sbjct: 72 SAFPLVEKAIMKSDLGLNPVNDGKIIRISIPPLTEERRKDLVKVARKYTEEAKVAVRNVR 131
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK G + +D +++ ++ +LT ++V +D+ C AKEKEI E
Sbjct: 132 RDANDALKKLEKGKEISEDDVRKSTDDVQKLTDRFVAKSDEKCTAKEKEIME 183
>gi|218888003|ref|YP_002437324.1| ribosome recycling factor [Desulfovibrio vulgaris str. 'Miyazaki
F']
gi|226703259|sp|B8DSA1.1|RRF_DESVM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|66766332|dbj|BAD99030.1| ribosome recycling factor [Desulfovibrio vulgaris]
gi|218758957|gb|ACL09856.1| ribosome recycling factor [Desulfovibrio vulgaris str. 'Miyazaki
F']
Length = 186
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 111/172 (64%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L RE KLRTGRAS ++D+I V+ G P++ LA VSV DS+TL+I P+D
Sbjct: 14 MEKALGSLDREFAKLRTGRASTSLVDNIKVDYYGTPTPISQLASVSVPDSRTLTIQPWDR 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI+ S LGLNP DG+ + +IP LT+E + + KV K +E+ K ++R R
Sbjct: 74 SAFQLVEKAIMKSDLGLNPVNDGKIIRISIPPLTEERRKDLVKVARKYTEEAKVAVRNVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK G + +D +++ ++ +LT ++V +D+ C AKEKEI E
Sbjct: 134 RDANDALKKLEKGKEISEDDVRKSTDDVQKLTDRFVAKSDEKCTAKEKEIME 185
>gi|354581543|ref|ZP_09000447.1| ribosome recycling factor [Paenibacillus lactis 154]
gi|353201871|gb|EHB67324.1| ribosome recycling factor [Paenibacillus lactis 154]
Length = 184
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 107/171 (62%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI+AL R+L LR GRA+P +LD I VE G P+N LA +S DS+TL I P+D
Sbjct: 13 MEKAILALRRDLATLRAGRAAPALLDRITVEYYGAPTPINQLANISTPDSRTLMIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L ++E AI+ S LGL P DG ++ IPALT+E + K+ K E+ K +IR R
Sbjct: 73 SSLADIEKAIMKSDLGLTPANDGMQIRLVIPALTEERRSELVKMTKKFGEEAKVAIRNIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + + +D+ +R +++I + T K++ D + AKEKEI E
Sbjct: 133 RDANDDIKKMEKTDISEDESRRHQEDIQKTTDKFIAEVDKVLVAKEKEIME 183
>gi|89098609|ref|ZP_01171491.1| ribosome recycling factor [Bacillus sp. NRRL B-14911]
gi|89086571|gb|EAR65690.1| ribosome recycling factor [Bacillus sp. NRRL B-14911]
Length = 185
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI A SREL +R GRAS +LD I V+ G P+N LA +SV +++ L I PYD
Sbjct: 13 MTKAIQAYSRELASIRAGRASASLLDRITVDYYGAPTPVNQLAGISVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L E+E AI+ S LGLNP DG L AIPALT+E + + KVV K SED K +IR R
Sbjct: 73 SILGEIEKAIIKSDLGLNPTNDGNLLRLAIPALTEERRKELVKVVKKESEDAKVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D ++ +I ++T +++ D I K KEKEI E
Sbjct: 133 RDANDDLKKLEKNGEITEDDLRGYSDDIQKMTDEHITKVDSITKDKEKEILE 184
>gi|261407947|ref|YP_003244188.1| ribosome recycling factor [Paenibacillus sp. Y412MC10]
gi|329929321|ref|ZP_08283074.1| ribosome recycling factor [Paenibacillus sp. HGF5]
gi|261284410|gb|ACX66381.1| ribosome recycling factor [Paenibacillus sp. Y412MC10]
gi|328936690|gb|EGG33133.1| ribosome recycling factor [Paenibacillus sp. HGF5]
Length = 184
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 108/171 (63%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI++L R+L LR GRA+P +LD I VE G + PLN LA +S DS+TL I P+D
Sbjct: 13 MEKAILSLKRDLATLRAGRAAPALLDRITVEYYGAQTPLNQLANISTPDSRTLMIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L ++E AI+ S +GL P DG ++ +PALT+E + K+ K E+ K +IR R
Sbjct: 73 SSLADIEKAIMKSDIGLTPANDGNQIRLVVPALTEERRTELVKMTKKFGEEAKVAIRNIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + + +D+ +R +++I + T K++ D + AKEKEI E
Sbjct: 133 RDANDDIKKLEKTDISEDESRRHQEDIQKATDKFIAEVDKVLVAKEKEIME 183
>gi|398310748|ref|ZP_10514222.1| ribosome recycling factor [Bacillus mojavensis RO-H-1]
Length = 185
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 108/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI A REL +R GRA+P +LD + VE G + PLN L+ ++V +++ L I PYD
Sbjct: 13 MEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI+ + LGL P DG + AIPALT+E + + KVV K +ED K ++R R
Sbjct: 73 SAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEDAKVAVRNVR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK S + +D+++ +++ +LT +YV D + K KEKEI E
Sbjct: 133 RDANDDLKKLEKSGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIME 184
>gi|261367153|ref|ZP_05980036.1| ribosome recycling factor [Subdoligranulum variabile DSM 15176]
gi|282571279|gb|EFB76814.1| ribosome recycling factor [Subdoligranulum variabile DSM 15176]
Length = 184
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 106/173 (61%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A++ L REL +R GRA+P +LD + V+ G P+N +A VSV +++ L+I P+D
Sbjct: 12 MNASVDHLVRELASIRAGRANPAVLDRVTVDYYGSPTPINQIAAVSVAEARILTITPWDR 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LK + AI +S +G+NP DGQ + PA T+E + + K V K E+ K ++R R
Sbjct: 72 QMLKPISKAIQTSDIGINPIDDGQVIRLVFPAPTEERRKQLTKDVQKQGEEAKVAVRNVR 131
Query: 121 QKALD---MMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D MKKAG L +D K+LE+E +LT KYVK D+ C AK KEI E
Sbjct: 132 RDAMDKFKAMKKAG-ELTEDDQKKLEEETQKLTDKYVKMIDETCAAKNKEIME 183
>gi|440503068|gb|AGC09632.1| putative ribosome recycling factor [uncultured bacterium]
gi|440503146|gb|AGC09680.1| putative ribosome recycling factor [uncultured bacterium]
Length = 185
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 111/172 (64%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL R+L +RTGRASP +++ + VE G PLN LA +SV + + L I P+D
Sbjct: 13 MGKAIDALKRDLGSIRTGRASPSLVERLPVEYYGSSTPLNQLAGISVPEPRLLVIQPWDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ +E AI+ S LGLNP DGQ + AIP+LT+E + + K+V E+ K ++R R
Sbjct: 73 GSMAAIEKAIMKSELGLNPSNDGQVIRIAIPSLTEERRKQLVKLVHGHVEEGKVALRNIR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+ +K+ S + +D +R E+++DELT++YV ADD+ KAKE+E+ E
Sbjct: 133 RDAMTNVKELMSEKLIGEDDERRAEQQVDELTRRYVGKADDVGKAKEQEVME 184
>gi|315648104|ref|ZP_07901205.1| ribosome recycling factor [Paenibacillus vortex V453]
gi|315276750|gb|EFU40093.1| ribosome recycling factor [Paenibacillus vortex V453]
Length = 184
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 107/171 (62%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI++L R+L LR GRA+P +LD I VE G PLN LA +S DS+TL I P+D
Sbjct: 13 MEKAILSLKRDLATLRAGRAAPALLDRITVEYYGAPTPLNQLANISTPDSRTLMIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L ++E AI+ S +GL P DG ++ +PALT+E + K+ K E+ K +IR R
Sbjct: 73 SSLADIEKAIMKSDIGLTPANDGNQIRLVVPALTEERRTELVKMTKKFGEEAKVAIRNIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + + +D+ +R +++I + T K++ D + AKEKEI E
Sbjct: 133 RDANDDIKKLEKTDISEDESRRHQEDIQKATDKFIAEVDKVLVAKEKEIME 183
>gi|357588937|ref|ZP_09127603.1| ribosome recycling factor [Corynebacterium nuruki S6-4]
Length = 185
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ + +LT +RTGRA+P M + + E GV+ P+ +A +SV + + L I PY+
Sbjct: 13 MSRSVEHVREDLTTIRTGRANPAMFNGVFAEYYGVRTPITQMATISVPEPRMLIIRPYEM 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L E+E AI +S LGLNP DGQ L +P LT+E + M KV ED K +IR R
Sbjct: 73 SVLGEIENAIRNSDLGLNPTDDGQVLRVTVPQLTEERRKEMVKVAKSKGEDAKIAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K +D ++K +D++K EKE+D++T+ YV DD+ AKEKE+ E
Sbjct: 133 RKGMDALQKIQKDGDAGEDEVKAAEKELDKVTQTYVGQVDDVVGAKEKELME 184
>gi|56964004|ref|YP_175735.1| ribosome recycling factor [Bacillus clausii KSM-K16]
gi|60390232|sp|Q5WFT1.1|RRF_BACSK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|56910247|dbj|BAD64774.1| ribosome recycling factor [Bacillus clausii KSM-K16]
Length = 185
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI LSREL KLR GRA+P +LD + VE G + PLN LA V+V +++ L I PYD
Sbjct: 13 MDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARLLLITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+ S LGL P DGQ + AIP LT+E + + ++V+KT+E+ K ++R R
Sbjct: 73 TAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSKTAEESKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ +I +LT YV D+ K KE+EI E
Sbjct: 133 RDANDELKKLQKDGEMTEDELRSATDDIQKLTDTYVAKIDEKAKQKEQEIIE 184
>gi|397690682|ref|YP_006527936.1| ribosome recycling factor [Melioribacter roseus P3M]
gi|395812174|gb|AFN74923.1| ribosome recycling factor [Melioribacter roseus P3M]
Length = 186
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 108/170 (63%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I A E+ K+RTG+A+ +LD I VE G PLN +A V+VLD+ TLSI P+D
Sbjct: 14 MDKSIEAFRSEIAKIRTGKATTALLDGIKVEYYGSMSPLNQVANVTVLDAHTLSITPWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI+++ LGLNP DG + IP LT+E + + K+V K ED K ++R R
Sbjct: 74 SVIGAIEKAIMTADLGLNPVNDGTNIKVPIPPLTEERRKELVKLVKKFGEDAKIALRNVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK + +DQ+K LEKE+ ++T +++ D++ K KEKEI
Sbjct: 134 RDANDHLKKMEKNKEITEDQLKDLEKEVQKVTDEHIAKVDEMIKHKEKEI 183
>gi|428218435|ref|YP_007102900.1| ribosome recycling factor [Pseudanabaena sp. PCC 7367]
gi|427990217|gb|AFY70472.1| ribosome recycling factor [Pseudanabaena sp. PCC 7367]
Length = 182
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 105/171 (61%), Gaps = 2/171 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI A +RTGRAS +LD I VE G+ PL LA +S DS T++I PYD
Sbjct: 10 MQKAIDATQSNFNTVRTGRASTSLLDRINVEYYGMPTPLKSLANISTPDSSTITIQPYDK 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI S LGL P DGQ + IP LT E + + K+VAK +E+ K +IR R
Sbjct: 70 GSMGQIERAIAESDLGLMPNNDGQVIRLNIPQLTTERREELIKMVAKLAEEGKVAIRNVR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
+ A+D ++K + +D+ + L++++D+LT KY K DD+ AKEKEI+
Sbjct: 130 RDAIDSVRKQEKAKEISEDESRGLQEDVDKLTSKYTKKIDDVLAAKEKEIS 180
>gi|332296167|ref|YP_004438090.1| ribosome-recycling factor [Thermodesulfobium narugense DSM 14796]
gi|332179270|gb|AEE14959.1| Ribosome-recycling factor [Thermodesulfobium narugense DSM 14796]
Length = 185
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ LS+E +RTGRASP +LDH+ V+ G +P+ LA VS D++TL IN YD
Sbjct: 13 MSKAVDNLSKEFASVRTGRASPALLDHVKVDYYGTTVPIKQLANVSQQDARTLLINVYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L+ ++ AI S LGL P+VDG L IP LT+E + + KVV K +E+ + ++R R
Sbjct: 73 NALQAVDKAIRLSDLGLTPQVDGMVLRIVIPTLTQERRKELVKVVKKMAEEARVAVRNIR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ L++++K + + +D +KR + E ++T Y++ D + KEKEI
Sbjct: 133 RDELEILEKRAKNKEISEDDLKRFKNEFQKITDSYIQEIDKLLSNKEKEI 182
>gi|296330867|ref|ZP_06873342.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674385|ref|YP_003866057.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii str.
W23]
gi|350265967|ref|YP_004877274.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|296151872|gb|EFG92746.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305412629|gb|ADM37748.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii str.
W23]
gi|349598854|gb|AEP86642.1| ribosome recycling factor [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 185
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI A REL +R GRA+P +LD + VE G + PLN L+ ++V +++ L + PYD
Sbjct: 13 MEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVVTPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI+ + LG+ P DG + AIPALT+E + + KVV K +ED K ++R R
Sbjct: 73 SAIGDIEKAILKADLGITPTSDGNMIRIAIPALTEERRKELVKVVKKYAEDAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ +++ +LT +YV D + K KEKEI E
Sbjct: 133 RDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIME 184
>gi|225181371|ref|ZP_03734815.1| ribosome recycling factor [Dethiobacter alkaliphilus AHT 1]
gi|225167952|gb|EEG76759.1| ribosome recycling factor [Dethiobacter alkaliphilus AHT 1]
Length = 185
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ AL R+L LR GRA+P +LD I+V+ G MP+N LA VS + + L I P+D
Sbjct: 13 MEKAVSALKRDLATLRAGRATPSLLDKIVVDYYGSSMPINQLANVSTPEPRLLVIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + E+E AI+ S LGL P DG + AIP LT+E + + KV K +ED + SIR R
Sbjct: 73 NAVAEVERAILKSDLGLTPVSDGSIIRLAIPQLTEERRKELVKVSKKKAEDGRVSIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + +K+ + + +D++ + + +I +LT K++ AD + AKEKEI E
Sbjct: 133 RDANEDLKRLEKDNEITEDELHKAQDDIQKLTDKFIAEADSVLDAKEKEIME 184
>gi|16078715|ref|NP_389534.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
168]
gi|221309530|ref|ZP_03591377.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
168]
gi|221313854|ref|ZP_03595659.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221318777|ref|ZP_03600071.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221323049|ref|ZP_03604343.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
SMY]
gi|321315419|ref|YP_004207706.1| ribosome recycling factor [Bacillus subtilis BSn5]
gi|402775898|ref|YP_006629842.1| ribosome recycling factor [Bacillus subtilis QB928]
gi|418033199|ref|ZP_12671676.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|428279250|ref|YP_005560985.1| ribosome recycling factor [Bacillus subtilis subsp. natto BEST195]
gi|430758924|ref|YP_007209645.1| Ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|449094343|ref|YP_007426834.1| ribosome recycling factor [Bacillus subtilis XF-1]
gi|452914427|ref|ZP_21963054.1| ribosome recycling factor [Bacillus subtilis MB73/2]
gi|3122762|sp|P81101.2|RRF_BACSU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor; AltName: Full=Vegetative
protein 12B; Short=VEG12B
gi|2634024|emb|CAB13525.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
168]
gi|291484207|dbj|BAI85282.1| ribosome recycling factor [Bacillus subtilis subsp. natto BEST195]
gi|320021693|gb|ADV96679.1| ribosome recycling factor [Bacillus subtilis BSn5]
gi|351469347|gb|EHA29523.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|402481080|gb|AFQ57589.1| Ribosome recycling factor [Bacillus subtilis QB928]
gi|407959059|dbj|BAM52299.1| ribosome recycling factor [Synechocystis sp. PCC 6803]
gi|407964636|dbj|BAM57875.1| ribosome recycling factor [Bacillus subtilis BEST7003]
gi|430023444|gb|AGA24050.1| Ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|449028258|gb|AGE63497.1| ribosome recycling factor [Bacillus subtilis XF-1]
gi|452116847|gb|EME07242.1| ribosome recycling factor [Bacillus subtilis MB73/2]
Length = 185
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI A REL +R GRA+P +LD + VE G + PLN L+ ++V +++ L I PYD
Sbjct: 13 MEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI+ + LGL P DG + AIPALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ +++ +LT +YV D + K KEKEI E
Sbjct: 133 RDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIME 184
>gi|297568948|ref|YP_003690292.1| ribosome recycling factor [Desulfurivibrio alkaliphilus AHT2]
gi|296924863|gb|ADH85673.1| ribosome recycling factor [Desulfurivibrio alkaliphilus AHT2]
Length = 184
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME +I A REL+++RTGRAS +LD + VE G MPLN +A +++ +S+ + I P+D
Sbjct: 12 MEKSIEAYRRELSRIRTGRASLSLLDGVKVEAYGSSMPLNQVATLTIPESRMIVIQPWDA 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI +S +GL P DG+ + IP LT+E + M K V K SE+ + ++R SR
Sbjct: 72 QQVSAIEKAIHASDIGLTPNSDGKVIRLMIPQLTEERRKEMVKQVKKISEEYRVAVRNSR 131
Query: 121 QKALDMMKKAGS--SLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A+D +KK + LP+D RL+ E + T +++K D I KEKE+ E
Sbjct: 132 REAIDTLKKLKNDKQLPEDDFFRLQDEAQQETDRFIKQIDSIMAEKEKEMME 183
>gi|390454037|ref|ZP_10239565.1| ribosome recycling factor [Paenibacillus peoriae KCTC 3763]
Length = 184
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 106/171 (61%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI AL R+L+ LR GRA+P +LD + VE G P+N LA V+ DS+TL I P+D
Sbjct: 13 MQKAIQALQRDLSSLRAGRATPALLDRVQVEYYGAMTPVNQLANVNTPDSRTLMIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L ++E AI S LGL P DG + +IPALT+E + K+ K E+ K +IR R
Sbjct: 73 SSLADIERAIQKSDLGLTPSNDGNTIRLSIPALTEERRAELVKMTKKNGEEAKIAIRNIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK S + +D+ ++ +++I + T K++ D + AKEKEI E
Sbjct: 133 RDANDDIKKMEKSDISEDESRKYQEDIQKTTDKFIAEVDRVLAAKEKEIME 183
>gi|28210950|ref|NP_781894.1| ribosome recycling factor [Clostridium tetani E88]
gi|34924948|sp|Q895K9.1|RRF_CLOTE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|28203389|gb|AAO35831.1| ribosome recycling factor [Clostridium tetani E88]
Length = 183
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 103/168 (61%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A++AL ++L L+ GRA+P MLD I E G PL+ LA +SV +++ L I P+D
Sbjct: 13 MSKALLALKKDLASLKAGRANPAMLDKIEAEYYGTMTPLSQLANISVPEARILQIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK +E AI+ S LGLNP DG + IP LT+E + + K V K ED K +IR R
Sbjct: 73 SSLKAIEKAILVSDLGLNPNNDGTIIRLIIPELTEETRRNIVKTVKKYGEDTKIAIRSVR 132
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +K S + +D +K+ E+EI ++T YVK D++ KEKEI
Sbjct: 133 RDGNDKIKDLKSDMSEDDIKKAEEEIQKITDNYVKKVDEMIDIKEKEI 180
>gi|404493556|ref|YP_006717662.1| ribosome recycling factor [Pelobacter carbinolicus DSM 2380]
gi|123573931|sp|Q3A398.1|RRF_PELCD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|77545597|gb|ABA89159.1| ribosome recycling factor [Pelobacter carbinolicus DSM 2380]
Length = 185
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +L +++TK+RTGRAS +LD ++V+ G PLN + ++V + + ++I P++
Sbjct: 13 MDKAVESLKKDMTKVRTGRASTSLLDDVMVDYYGTPTPLNQVGTLAVPEPRLITIQPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L ++E AI + LGLNP DG + IP +T+E + M KVV K ED K +R +R
Sbjct: 73 KLLADIERAIFKADLGLNPTSDGNLIRLVIPPMTEERRKEMGKVVRKMGEDAKVGVRSAR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D MKK + +D +KR EKEI ++T YV DD+ KEKEI E
Sbjct: 133 RDANDGMKKLEKNKEISEDDLKRGEKEIQDVTDSYVAKIDDLVSQKEKEIME 184
>gi|402297393|ref|ZP_10817163.1| ribosome recycling factor [Bacillus alcalophilus ATCC 27647]
gi|401727315|gb|EJT00506.1| ribosome recycling factor [Bacillus alcalophilus ATCC 27647]
Length = 185
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 109/172 (63%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL+REL KLR GRA+P +LD + VE G + PLN LA +SV +++ L I P+D
Sbjct: 13 MTKAIDALNRELAKLRAGRANPALLDRVTVEYYGAETPLNQLATISVPEARLLVIQPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++ ++E AI+ + LGL P DG + IPALT+E + + K+V +++E+ K ++R R
Sbjct: 73 SSINDVERAIMKADLGLTPSNDGTIIRIQIPALTEERRKELVKLVKRSAEEAKVAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK+ + +D ++R E+ +LT K ++ D + KEKEI E
Sbjct: 133 RDANDELKKSQKDGDMTEDDLRRETDEVQKLTDKTIEKVDAVAANKEKEIME 184
>gi|443632677|ref|ZP_21116856.1| ribosome recycling factor [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443347500|gb|ELS61558.1| ribosome recycling factor [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 185
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI A REL +R GRA+P +LD + VE G + PLN L+ ++V +++ L + PYD
Sbjct: 13 MEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVVTPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI+ + LGL P DG + AIPALT+E + + KVV K +E+ K ++R R
Sbjct: 73 SAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ +++ +LT +YV D + K KEKEI E
Sbjct: 133 RDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIME 184
>gi|15895066|ref|NP_348415.1| ribosome recycling factor [Clostridium acetobutylicum ATCC 824]
gi|337737007|ref|YP_004636454.1| ribosome recycling factor [Clostridium acetobutylicum DSM 1731]
gi|384458515|ref|YP_005670935.1| ribosome recycling factor [Clostridium acetobutylicum EA 2018]
gi|22001946|sp|Q97I63.1|RRF_CLOAB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|15024762|gb|AAK79755.1|AE007688_4 Ribosome recycling factor [Clostridium acetobutylicum ATCC 824]
gi|325509204|gb|ADZ20840.1| ribosome recycling factor [Clostridium acetobutylicum EA 2018]
gi|336292659|gb|AEI33793.1| ribosome recycling factor [Clostridium acetobutylicum DSM 1731]
Length = 185
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I AL +ELT ++ GRA+P MLD I V+ G PLN LA +SV +S+ L I P+D
Sbjct: 13 MTKSISALKKELTSMKAGRANPAMLDRIEVDYYGTMTPLNQLANISVPESRVLMIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AI+ S LGLNP DG + IP LT+E + + K V K ED K ++R R
Sbjct: 73 SAMKSIEKAILISDLGLNPSNDGTTMRLVIPELTEETRKNIVKNVKKAGEDGKVALRAIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K K +S+ +D+MK E +I + T YVK D + +AKEKEI
Sbjct: 133 RDANDKVKSLKKDNSITEDEMKSAENDIQKKTDSYVKEIDKMVEAKEKEI 182
>gi|291296165|ref|YP_003507563.1| ribosome recycling factor [Meiothermus ruber DSM 1279]
gi|290471124|gb|ADD28543.1| ribosome recycling factor [Meiothermus ruber DSM 1279]
Length = 185
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 106/173 (61%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ AL LT +RTGRA+P +L++I VE G MPLN + VS D +TL + +DP
Sbjct: 13 MQKSLEALEHHLTTMRTGRANPAILNNIKVEYYGSTMPLNQVGTVSSPDPRTLVVQSWDP 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LKE+E AI S LGLNP G L +IP LT+E + + K V + +E+ + ++R R
Sbjct: 73 NMLKEIEKAIRDSDLGLNPTNKGDALYISIPPLTEERRRDLVKSVKQYAEEARIAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
++ALD KK L +D +KR E EI ++T ++V D+ KE+EI +G
Sbjct: 133 REALDKAKKLEKEKHLSEDDIKRAEAEIQKITDEFVHKIDEALHKKEQEILKG 185
>gi|384175394|ref|YP_005556779.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349594618|gb|AEP90805.1| ribosome recycling factor [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 185
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI A REL +R GRA+P +LD + VE G + PLN L+ ++V +++ L I PYD
Sbjct: 13 MEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI+ + LGL P DG + AIPALT+E + + KV+ K +E+ K ++R R
Sbjct: 73 TAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVIKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ +++ +LT +YV D + K KEKEI E
Sbjct: 133 RDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIME 184
>gi|295696146|ref|YP_003589384.1| ribosome recycling factor [Kyrpidia tusciae DSM 2912]
gi|295411748|gb|ADG06240.1| ribosome recycling factor [Kyrpidia tusciae DSM 2912]
Length = 184
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 108/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ AL +E +R GRA+PG+LD + VE G MP++ LA ++ + + L I P+D
Sbjct: 12 MNKSLQALKKEFASVRAGRATPGLLDKVTVEYYGTSMPIHQLASITAPEPRLLVIQPWDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+E AI+ S LGL P DGQ + AIP LT+E Q + ++V K +E+ + +IR R
Sbjct: 72 GALAEIEKAILKSDLGLTPTNDGQVIRLAIPQLTQERRQELARMVRKLAEESRVAIRNIR 131
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A D ++K+ S+ +D+ +RL++ I LT ++++ D + AKEKEI E
Sbjct: 132 REANDEIRKSEKDGSVSEDEGRRLQERIQGLTDRFIEEIDRLLAAKEKEITE 183
>gi|86606512|ref|YP_475275.1| ribosome recycling factor [Synechococcus sp. JA-3-3Ab]
gi|86555054|gb|ABD00012.1| ribosome recycling factor [Synechococcus sp. JA-3-3Ab]
Length = 182
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ A R +RTGRA+ +LD + VE GV PL LA ++ D+ TL I P+DP
Sbjct: 10 MSKAVQATQRSFNTVRTGRANASLLDRVQVEYYGVPTPLKALASITTPDASTLLIQPFDP 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TL +E AIV+S LGL P DG+ + IP LT+E + + K VAK +E+ + SIR R
Sbjct: 70 STLAAIERAIVASDLGLTPSNDGKVVRLNIPPLTEERRKELSKQVAKLAEEGRVSIRNIR 129
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K + +D+ K L++EI +LT +Y+K DD+ KEKE+
Sbjct: 130 RDAIDSVRKREKNGEISEDESKSLQEEIQKLTDRYIKKIDDLLAEKEKEL 179
>gi|224540949|ref|ZP_03681488.1| hypothetical protein CATMIT_00100 [Catenibacterium mitsuokai DSM
15897]
gi|224526100|gb|EEF95205.1| ribosome recycling factor [Catenibacterium mitsuokai DSM 15897]
Length = 181
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 107/168 (63%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ A S EL +RTGRA+P MLD ++VE G PLN +A +SV++ + L I PYD
Sbjct: 13 MEKSVEAFSNELVNIRTGRANPSMLDRVMVEYYGSPTPLNQVAGISVVEGRQLVIKPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N++K++E I + LGL P+ DG + IP LT+E + M K V K +E+ K ++R R
Sbjct: 73 NSMKDIEHGIYQADLGLTPQNDGTVIRIVIPPLTEERRKEMVKQVNKLAEEAKVALRNIR 132
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A ++K G + +D++K ++++ +LT ++VK D I K KEK++
Sbjct: 133 RNANTDVEKTGET--EDEVKAGKEDVQDLTNEFVKKIDQIAKEKEKDL 178
>gi|51892632|ref|YP_075323.1| ribosome recycling factor [Symbiobacterium thermophilum IAM 14863]
gi|60390686|sp|Q67PB4.1|RRF_SYMTH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|51856321|dbj|BAD40479.1| ribosome recycling factor [Symbiobacterium thermophilum IAM 14863]
Length = 185
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 110/172 (63%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +EL +R RA+P +LD + VE G ++P+N++A + V D +TL I P+D
Sbjct: 13 MKKAVEVFRQELAGMRANRATPALLDKVRVEAYGSEVPVNNVATIEVPDPRTLVIKPWDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AI +S LGLNP DGQ + +IP +T+E + + KVVAK +E+ + +IR R
Sbjct: 73 SLIKAIERAINASDLGLNPTNDGQVIRLSIPPMTEERRRELVKVVAKRTEEQRVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + +KK ++ +D+ KR + E+ +LT KY+K D + AKEKEI E
Sbjct: 133 RDANEQIKKLEKDKAVSEDESKRAQDEVQKLTDKYIKEVDQLMAAKEKEIME 184
>gi|386758376|ref|YP_006231592.1| ribosome recycling factor [Bacillus sp. JS]
gi|384931658|gb|AFI28336.1| ribosome recycling factor [Bacillus sp. JS]
Length = 185
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI A REL +R GRA+P +LD + VE G + PLN L+ ++V +++ L I PYD
Sbjct: 13 MEKAIAAYQRELATVRAGRANPSLLDKVSVEYYGAQTPLNQLSSINVPEARMLVITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI+ + LGL P DG + AIPALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ +++ +LT +YV D + K KEKEI E
Sbjct: 133 RDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIME 184
>gi|366085842|ref|ZP_09452327.1| ribosome recycling factor [Lactobacillus zeae KCTC 3804]
Length = 185
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L REL +R GRA+ +L+ I VE G PLN +A ++V +++ L I+PYD + LK +
Sbjct: 19 SLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITVPEARVLQISPYDKSALKNI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI +S LG+NP DG + IP LT E + + K V K SE+ K ++R R++ LD
Sbjct: 79 ETAINASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKFSENAKIAVRNIRREGLDK 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K+ + +D++ RLEK++ ++T + K DDI AKEKEI E
Sbjct: 139 LKRQEKDGDITEDELHRLEKDMQKVTDEATKRIDDIAAAKEKEITE 184
>gi|451980473|ref|ZP_21928862.1| Ribosome recycling factor [Nitrospina gracilis 3/211]
gi|451762209|emb|CCQ90094.1| Ribosome recycling factor [Nitrospina gracilis 3/211]
Length = 184
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+A I L +E K+RTGRAS +++ I VE G PLN A +S DS+T+SI P+DP
Sbjct: 12 MKATIDHLHQEFGKVRTGRASVALVEDIKVEFYGNPTPLNQTATLSTPDSRTISIAPWDP 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI +S LGLNP DG+ + IP LT E Q M K+V K +E+ K +IR R
Sbjct: 72 TMLPVIEKAISASDLGLNPSNDGKVIRLNIPPLTTERRQQMTKIVRKYAEEAKIAIRNIR 131
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +K + SS+ KD+ KR +I ++T KYV+ D I ++KEK++ E
Sbjct: 132 RDFNDKIKAMEKDSSISKDEEKRGHDQIQKMTDKYVEEVDKIAESKEKDVME 183
>gi|375308258|ref|ZP_09773544.1| ribosome-recycling factor [Paenibacillus sp. Aloe-11]
gi|375079682|gb|EHS57904.1| ribosome-recycling factor [Paenibacillus sp. Aloe-11]
Length = 184
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 106/171 (61%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI AL R+L+ LR GRA+P +LD + VE G P+N LA V+ DS+TL I P+D
Sbjct: 13 MQKAIQALQRDLSSLRAGRATPALLDRVQVEYYGAMTPVNQLANVNTPDSRTLMIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L ++E AI S LGL P DG + +IPALT+E + K+ K E+ K +IR R
Sbjct: 73 SSLADIERAIQKSDLGLTPSNDGNTIRLSIPALTEERRTELVKMTKKNGEEAKIAIRNIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK S + +D+ ++ +++I + T K++ D + AKEKEI E
Sbjct: 133 RDANDDIKKMEKSDISEDESRKHQEDIQKTTDKFIAEVDRVLAAKEKEIME 183
>gi|310641584|ref|YP_003946342.1| ribosome-recycling factor [Paenibacillus polymyxa SC2]
gi|309246534|gb|ADO56101.1| Ribosome-recycling factor [Paenibacillus polymyxa SC2]
Length = 184
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 107/171 (62%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI AL R+L+ LR GRA+P +LD + VE G P+N LA ++ DS+TL I P+D
Sbjct: 13 MQKAIQALQRDLSSLRAGRATPALLDRVQVEYYGAMTPVNQLANINTPDSRTLMIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L ++E AI S LGL P DG + +IPALT+E + K+ K+ E+ K +IR R
Sbjct: 73 SSLADIERAIQKSDLGLTPSNDGNTIRLSIPALTEERRTDLVKLTKKSGEEAKIAIRNIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK S + +D+ ++ +++I + T K++ D + AKEKEI E
Sbjct: 133 RDANDDIKKMEKSDISEDESRKHQEDIQKTTDKFIAEVDKVLAAKEKEIME 183
>gi|430750280|ref|YP_007213188.1| ribosome recycling factor [Thermobacillus composti KWC4]
gi|430734245|gb|AGA58190.1| ribosome recycling factor [Thermobacillus composti KWC4]
Length = 184
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 104/171 (60%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI AL R+L LR GRA+P MLD I+V+ G P+N LA ++ D++TL I P+D
Sbjct: 13 MDKAIAALRRDLATLRAGRATPAMLDRILVDYYGAPTPVNQLATINTPDARTLVIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L E+E AI+ S LGL P DG + ++P LT+E + K K E+ K +IR R
Sbjct: 73 SVLGEIEKAIMKSELGLTPANDGSIIRLSVPPLTEERRTDLVKQTKKFGEEAKVAIRNVR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK L +D+ +R +++I +LT +++ D I AKEKEI E
Sbjct: 133 RDANDDIKKLEKGELSEDESRRHQEDIQKLTDRFIAEVDRIIAAKEKEIME 183
>gi|138894772|ref|YP_001125225.1| ribosome recycling factor [Geobacillus thermodenitrificans NG80-2]
gi|196247605|ref|ZP_03146307.1| ribosome recycling factor [Geobacillus sp. G11MC16]
gi|166230789|sp|A4IMC6.1|RRF_GEOTN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|134266285|gb|ABO66480.1| Ribosome recycling factor [Geobacillus thermodenitrificans NG80-2]
gi|196212389|gb|EDY07146.1| ribosome recycling factor [Geobacillus sp. G11MC16]
Length = 185
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A SREL +R GRA+ G+L+ + V+ GV P+N LA +SV +++ L I PYD
Sbjct: 13 MDKAVQAFSRELATVRAGRANAGLLEKVTVDYYGVATPINQLATISVPEARMLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +KE+E AI++S LG+ P DG + IP LT+E + + K+V K SE+ K ++R R
Sbjct: 73 SVIKEMEKAILASDLGVTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEEAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK S + +D+++ E+ +LT ++ D I K KEKE+ E
Sbjct: 133 RDANDELKKLEKNSEITEDELRSYTDEVQKLTDSHIAKIDAITKEKEKEVME 184
>gi|260892482|ref|YP_003238579.1| ribosome recycling factor [Ammonifex degensii KC4]
gi|260864623|gb|ACX51729.1| ribosome recycling factor [Ammonifex degensii KC4]
Length = 184
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 111/172 (64%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ ++L +RTGRASP +L+ ++V+ GV P+N LA ++ + + L I P+D
Sbjct: 12 MKKAVEHFKKDLAAIRTGRASPALLEKVMVDYYGVPTPVNQLATITAPEPRLLVIQPWDR 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI+ S LGL P DGQ + +P LT+E + + +V K +E+ + +IR R
Sbjct: 72 SIINEIEKAILKSDLGLTPNNDGQVIRLILPQLTQERREELVRVARKRAEEARVAIRNIR 131
Query: 121 QKALDMM--KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A D + K+ ++ +D++KRL+ E+ +LT+KY+K D++ AKEKEI E
Sbjct: 132 REANDELKEKQKKENVSEDEIKRLQGEVQKLTEKYIKEVDNLLAAKEKEIME 183
>gi|398304227|ref|ZP_10507813.1| ribosome recycling factor [Bacillus vallismortis DV1-F-3]
Length = 185
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI A REL +R GRA+P +LD + VE G + PLN L+ ++V +++ L + PYD
Sbjct: 13 MEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVVTPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI+ + LG+ P DG + AIPALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TAIGDIEKAILKADLGVTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ +++ +LT +YV D + K KEKEI E
Sbjct: 133 RDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIME 184
>gi|403378772|ref|ZP_10920829.1| ribosome recycling factor [Paenibacillus sp. JC66]
Length = 184
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 104/171 (60%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI AL +EL LR GRA+P +LD ++VE G P+N LA ++ D+++L I P+D
Sbjct: 13 MEKAIAALQKELASLRAGRATPALLDRVLVEYYGTMTPVNQLANITTPDARSLYIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++ +E AI+ S LGL P DG + +PALT+E + K+ K E+ K +IR R
Sbjct: 73 SSIGAIEKAIMKSELGLTPSNDGSAIRIVLPALTEERRADLVKMTRKYGEEAKVAIRNIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + + +D+ +R + +I +LT KYV D I KEK+I E
Sbjct: 133 RDANDEIKKREKTDISEDESRRHQDDIQKLTDKYVAEVDKILAVKEKDITE 183
>gi|169350431|ref|ZP_02867369.1| hypothetical protein CLOSPI_01199 [Clostridium spiroforme DSM 1552]
gi|169292751|gb|EDS74884.1| ribosome recycling factor [Clostridium spiroforme DSM 1552]
Length = 181
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 106/168 (63%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I + R+LT +RTGRA+P MLD ++V G P+N +A +SV++ + L I PYD
Sbjct: 13 MGKTIDSFKRDLTTVRTGRANPAMLDRVMVNYYGSPTPINQMAGISVVEGRQLVIKPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++E I + LGL P+ DG+ + +PALT++ + K V K +E+ K SIR R
Sbjct: 73 SVIKDIEHGIYEAELGLTPQNDGEIIRIMVPALTEDRRREFAKQVWKFAENAKVSIRNIR 132
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + D +KK S +D++K ++++ +LT K+VK D+I K KEKEI
Sbjct: 133 RDSNDEIKKVDGS--EDEIKAGQEKVQKLTDKFVKEIDEIAKVKEKEI 178
>gi|308068689|ref|YP_003870294.1| ribosome recycling factor (ribosome releasing factor)
[Paenibacillus polymyxa E681]
gi|305857968|gb|ADM69756.1| Ribosome recycling factor (Ribosome releasing factor)
[Paenibacillus polymyxa E681]
Length = 184
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 105/171 (61%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI AL R+L LR GRA+P +LD + VE G P+N LA V+ DS+TL I P+D
Sbjct: 13 MQKAIQALQRDLASLRAGRATPALLDRVQVEYYGAMTPVNQLANVNTPDSRTLMIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L ++E AI S LGL P DG + +IPALT+E + K+ K E+ K +IR R
Sbjct: 73 SSLADIERAIQKSDLGLTPSNDGNTIRLSIPALTEERRTDLVKLTKKNGEEAKIAIRNIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK S + +D+ ++ +++I + T K++ D + AKEKEI E
Sbjct: 133 RDANDDIKKLEKSDISEDESRKHQEDIQKTTDKFIAEVDKVLAAKEKEIME 183
>gi|167756899|ref|ZP_02429026.1| hypothetical protein CLORAM_02448 [Clostridium ramosum DSM 1402]
gi|167703074|gb|EDS17653.1| ribosome recycling factor [Clostridium ramosum DSM 1402]
Length = 193
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 106/168 (63%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I + R+L+ +RTGRA+P MLD ++V G P+N +A +SV++ + L I PYD
Sbjct: 25 MTKTIESFQRDLSSVRTGRANPNMLDRVMVNYYGSPTPVNQIAGISVVEGRQLVIKPYDK 84
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++K++E I + LGL P+ DG+ + +PALT+E + K V K +E+ K SIR R
Sbjct: 85 SSIKDIEHGIYEADLGLTPQNDGEIIRIMVPALTEERRKEFAKNVWKFAENAKVSIRNIR 144
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + D +KK S +D++K ++ + +LT K+VK D+I K KEK+I
Sbjct: 145 RDSNDEIKKTDGS--EDEIKAGQERVQKLTDKFVKEIDEIAKVKEKDI 190
>gi|303277739|ref|XP_003058163.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460820|gb|EEH58114.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 167
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 109/169 (64%), Gaps = 3/169 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+AA+ AL R+L KLRTGRASPGML+ ++V+ G PL +L V+ +++TL++ YDP
Sbjct: 1 MDAAVEALERDLGKLRTGRASPGMLESLVVDAYGEPTPLRNLGSVTARNAQTLAVMLYDP 60
Query: 61 NTLKELECAIVSSPLGLNPRVDGQ-RLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRS 119
++ AI SPLG NP+ DG L+ +P +T E + K+ + E K S+R +
Sbjct: 61 TLKGAVQNAITESPLGFNPQEDGDGTLLVPVPEMTHETKVQVAKLCHRAGETAKISVRNA 120
Query: 120 RQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
R+K +D++KKA ++ +D+ R EK++ ++++ +VK +++ AKEK I
Sbjct: 121 RRKGMDVIKKA--TMTEDEGNRAEKDVQKMSEAFVKKIEELVSAKEKSI 167
>gi|386040611|ref|YP_005959565.1| ribosome-recycling factor RRF; Ribosome-releasing factor
[Paenibacillus polymyxa M1]
gi|343096649|emb|CCC84858.1| ribosome-recycling factor RRF; Ribosome-releasing factor
[Paenibacillus polymyxa M1]
Length = 184
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 106/171 (61%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI AL R+L LR GRA+P +LD + VE G P+N LA ++ DS+TL I P+D
Sbjct: 13 MQKAIQALQRDLASLRAGRATPALLDRVQVEYYGAMTPVNQLANINTPDSRTLMIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L ++E AI S LGL P DG + +IPALT+E + K+ K+ E+ K +IR R
Sbjct: 73 SSLADIERAIQKSDLGLTPSNDGNTIRLSIPALTEERRTDLVKLTKKSGEEAKIAIRNIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK S + +D+ ++ +++I + T K++ D + AKEKEI E
Sbjct: 133 RDANDDIKKMEKSDISEDESRKHQEDIQKTTDKFIAEVDKVLAAKEKEIME 183
>gi|373485859|ref|ZP_09576541.1| ribosome recycling factor [Holophaga foetida DSM 6591]
gi|372012909|gb|EHP13462.1| ribosome recycling factor [Holophaga foetida DSM 6591]
Length = 191
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 106/172 (61%), Gaps = 4/172 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I L RE+ +RTGRA+P +LD I VE G +MPL LA VSV +S TL I P+D
Sbjct: 17 MKTSIETLRREMATVRTGRANPSILDSIHVEYYGSEMPLTQLASVSVPESSTLVIQPFDK 76
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++K +E AI+ S LGLNP DG + IPALT+E + + KVV + E++K +IR R
Sbjct: 77 SSIKAIETAILKSELGLNPANDGNVIRLPIPALTEERRKELTKVVHRMGEEIKTAIRNVR 136
Query: 121 QKALDMMKK----AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK + + +D K+ +I +LT ++K D+ K K+ EI
Sbjct: 137 RDANDDVKKLEKDKNAGVSEDAAKKTLDQIQKLTDDFIKEIDETVKHKDAEI 188
>gi|261419452|ref|YP_003253134.1| ribosome recycling factor [Geobacillus sp. Y412MC61]
gi|261375909|gb|ACX78652.1| ribosome recycling factor [Geobacillus sp. Y412MC61]
Length = 186
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A +REL +R GRA+ G+L+ + V+ GV P+N LA +SV +++ L I PYD
Sbjct: 14 MDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLLVIQPYDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +KE+E AI++S LGL P DG + IP LT+E + + K+V K SED K ++R R
Sbjct: 74 SAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEDAKVAVRNIR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ E+ +LT ++ D I K KEKE+ E
Sbjct: 134 RDANDELKKLEKNGEITEDELRSYTDEVQKLTDDHIAKIDAITKEKEKEVME 185
>gi|56419787|ref|YP_147105.1| ribosome recycling factor [Geobacillus kaustophilus HTA426]
gi|297530573|ref|YP_003671848.1| ribosome recycling factor [Geobacillus sp. C56-T3]
gi|319766267|ref|YP_004131768.1| ribosome recycling factor [Geobacillus sp. Y412MC52]
gi|375008224|ref|YP_004981857.1| ribosome-recycling factor [Geobacillus thermoleovorans CCB_US3_UF5]
gi|448237408|ref|YP_007401466.1| ribosome recycling factor [Geobacillus sp. GHH01]
gi|60390228|sp|Q5L0J9.1|RRF_GEOKA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|56379629|dbj|BAD75537.1| ribosome recycling factor [Geobacillus kaustophilus HTA426]
gi|297253825|gb|ADI27271.1| ribosome recycling factor [Geobacillus sp. C56-T3]
gi|317111133|gb|ADU93625.1| ribosome recycling factor [Geobacillus sp. Y412MC52]
gi|359287073|gb|AEV18757.1| Ribosome-recycling factor [Geobacillus thermoleovorans CCB_US3_UF5]
gi|445206250|gb|AGE21715.1| ribosome recycling factor [Geobacillus sp. GHH01]
Length = 185
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A +REL +R GRA+ G+L+ + V+ GV P+N LA +SV +++ L I PYD
Sbjct: 13 MDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +KE+E AI++S LGL P DG + IP LT+E + + K+V K SED K ++R R
Sbjct: 73 SAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEDAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ E+ +LT ++ D I K KEKE+ E
Sbjct: 133 RDANDELKKLEKNGEITEDELRSYTDEVQKLTDDHIAKIDAITKEKEKEVME 184
>gi|345888558|ref|ZP_08839635.1| ribosome-recycling factor [Bilophila sp. 4_1_30]
gi|345040575|gb|EGW44818.1| ribosome-recycling factor [Bilophila sp. 4_1_30]
Length = 186
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 109/170 (64%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ AL R+ ++LRTGRAS G++D+I V+ G P++ LA V++ DS+T++I P+D
Sbjct: 14 MDKALGALDRDFSRLRTGRASTGLVDNIKVDYYGTPTPISQLASVAIPDSRTITIQPWDR 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+E AI+ S LGL P DG+ + +IP LT++ + + K+ K+ E+ K ++R R
Sbjct: 74 GAFASVEKAILKSDLGLTPVNDGKIIRISIPPLTEDRRKELGKLARKSGEEAKVAVRNVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK ++ +D++K+ ++ +LT KYV D+ C AKEKEI
Sbjct: 134 RDANDQLKKLEKDKAISEDELKKATDDVQKLTDKYVAKVDEKCAAKEKEI 183
>gi|325282615|ref|YP_004255156.1| Ribosome-recycling factor [Deinococcus proteolyticus MRP]
gi|324314424|gb|ADY25539.1| Ribosome-recycling factor [Deinococcus proteolyticus MRP]
Length = 183
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 103/168 (61%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I AL L LRTGRA+PG+L ++VE G MP++ +A ++ D++TL++ P+D
Sbjct: 15 MGKSIEALESNLGVLRTGRANPGILKKVMVEYFGSTMPIDQVASINAPDARTLTVTPWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI S LGLNP G + +IPALT+E + M K +E+ + SIR R
Sbjct: 75 GALNPIEKAIRDSDLGLNPNNKGDMIFISIPALTEERRKEMVKNAKSYAEEARISIRNVR 134
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ ALD +KK L +D++KR E E+ ++T +YVK D++ KE EI
Sbjct: 135 KSALDEVKKL-DDLGEDEVKRAEAEVQKITDEYVKKVDEVFDRKEAEI 181
>gi|319937403|ref|ZP_08011810.1| flagellar biosynthetic protein flhB [Coprobacillus sp. 29_1]
gi|319807769|gb|EFW04362.1| flagellar biosynthetic protein flhB [Coprobacillus sp. 29_1]
Length = 181
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 108/168 (64%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I A EL+ +RTGRA+P MLD ++V G K PLN +A +SV++ + L I PYD
Sbjct: 13 MDKSIDAFKNELSTVRTGRANPTMLDRVMVNYYGEKTPLNQMASISVVEGRQLMIKPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TLK++E + + LGL P+ DG+ + +PALT+E + K K +ED K ++R R
Sbjct: 73 STLKDIEHGVYEADLGLAPQNDGEVIRINVPALTEETRRGYVKQAKKFAEDAKVALRNIR 132
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D + KAG L +D++K+ ++ + +LT +YVK D + K KE+++
Sbjct: 133 RSANDDVDKAG--LTEDEVKQGKERVQKLTDEYVKIIDQLAKDKEEDL 178
>gi|452974444|gb|EME74264.1| ribosome recycling factor [Bacillus sonorensis L12]
Length = 185
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A REL +R GRA+P +LD + VE G + PLN LA ++V +++ L I PYD
Sbjct: 13 MEKAVAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLASITVPEARMLVITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L ++E AI + LG+ P DG + IP LT+E + + K+V K SED K ++R R
Sbjct: 73 TALGDIEKAIQKADLGVTPTNDGSIIRITIPPLTEERRKELAKLVKKYSEDAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ +++ +LT +YV D+I K KEKEI E
Sbjct: 133 RDANDDLKKLEKNGEMTEDELRSSTEDVQKLTDEYVSKIDEITKDKEKEIME 184
>gi|237734608|ref|ZP_04565089.1| flagellar biosynthetic protein flhB [Mollicutes bacterium D7]
gi|365832619|ref|ZP_09374150.1| ribosome recycling factor [Coprobacillus sp. 3_3_56FAA]
gi|374625638|ref|ZP_09698054.1| ribosome recycling factor [Coprobacillus sp. 8_2_54BFAA]
gi|229382428|gb|EEO32519.1| flagellar biosynthetic protein flhB [Coprobacillus sp. D7]
gi|365260198|gb|EHM90163.1| ribosome recycling factor [Coprobacillus sp. 3_3_56FAA]
gi|373915298|gb|EHQ47069.1| ribosome recycling factor [Coprobacillus sp. 8_2_54BFAA]
Length = 181
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 106/168 (63%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I + R+L+ +RTGRA+P MLD ++V G P+N +A +SV++ + L I PYD
Sbjct: 13 MTKTIESFQRDLSSVRTGRANPNMLDRVMVNYYGSPTPVNQIAGISVVEGRQLVIKPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++K++E I + LGL P+ DG+ + +PALT+E + K V K +E+ K SIR R
Sbjct: 73 SSIKDIEHGIYEADLGLTPQNDGEIIRIMVPALTEERRKEFAKNVWKFAENAKVSIRNIR 132
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + D +KK S +D++K ++ + +LT K+VK D+I K KEK+I
Sbjct: 133 RDSNDEIKKTDGS--EDEIKAGQERVQKLTDKFVKEIDEIAKVKEKDI 178
>gi|154686069|ref|YP_001421230.1| ribosome recycling factor [Bacillus amyloliquefaciens FZB42]
gi|375362297|ref|YP_005130336.1| Ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384265236|ref|YP_005420943.1| Ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385264779|ref|ZP_10042866.1| ribosome recycling factor [Bacillus sp. 5B6]
gi|387898234|ref|YP_006328530.1| ribosome recycling factor [Bacillus amyloliquefaciens Y2]
gi|394993995|ref|ZP_10386732.1| ribosome recycling factor [Bacillus sp. 916]
gi|421731676|ref|ZP_16170799.1| ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429505206|ref|YP_007186390.1| ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|451346975|ref|YP_007445606.1| ribosome recycling factor [Bacillus amyloliquefaciens IT-45]
gi|452855599|ref|YP_007497282.1| ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|166230410|sp|A7Z4S3.1|RRF_BACA2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|154351920|gb|ABS73999.1| Frr [Bacillus amyloliquefaciens FZB42]
gi|371568291|emb|CCF05141.1| Ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380498589|emb|CCG49627.1| Ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385149275|gb|EIF13212.1| ribosome recycling factor [Bacillus sp. 5B6]
gi|387172344|gb|AFJ61805.1| ribosome recycling factor [Bacillus amyloliquefaciens Y2]
gi|393805189|gb|EJD66571.1| ribosome recycling factor [Bacillus sp. 916]
gi|407073889|gb|EKE46879.1| ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429486796|gb|AFZ90720.1| ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|449850733|gb|AGF27725.1| ribosome recycling factor [Bacillus amyloliquefaciens IT-45]
gi|452079859|emb|CCP21617.1| ribosome recycling factor [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 185
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRA+P +LD + VE G + PLN L+ ++V +++ L + PYD
Sbjct: 13 MEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVVTPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI+ + LG+ P DG + AIPALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + D +KK + +D+++ +++ +LT +YV D + K KEKEI E
Sbjct: 133 RDSNDDLKKLEKNGDITEDELRASSEDVQKLTDEYVSKIDSVTKDKEKEIME 184
>gi|253573556|ref|ZP_04850899.1| ribosome recycling factor [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251847084|gb|EES75089.1| ribosome recycling factor [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 184
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 105/171 (61%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI AL R+L+ LR GRA+P +LD I V+ G P+N LA ++ DS+TL I P+D
Sbjct: 13 MEKAIQALRRDLSTLRAGRATPSLLDRIQVDYYGSPTPINQLANINTPDSRTLLIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L E+E AI S LGL P DG + IPALT+E + K+ K E+ K +IR R
Sbjct: 73 SSLSEIERAIQKSDLGLTPANDGSSIRLTIPALTEERRIELVKMTKKFGEEAKVAIRNIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + + +D+ +R +++I + T K++ D + AKEKEI E
Sbjct: 133 RDANDDIKKLEKTDISEDESRRHQEDIQKTTDKFIAEVDKVLAAKEKEIME 183
>gi|374323500|ref|YP_005076629.1| ribosome recycling factor [Paenibacillus terrae HPL-003]
gi|357202509|gb|AET60406.1| ribosome recycling factor [Paenibacillus terrae HPL-003]
Length = 184
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 103/171 (60%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI +L R+L LR GRA+P +LD + VE G P+N LA V+ DS+TL I P+D
Sbjct: 13 MHKAIQSLQRDLASLRAGRATPALLDRVQVEYYGAMTPVNQLANVNTPDSRTLMIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+L ++E AI S LGL P DG + +IPALT+E + K+ K E+ K +IR R
Sbjct: 73 TSLADIERAIQKSDLGLTPSNDGNTIRLSIPALTEERRTDLVKLTKKNGEEAKVAIRNIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + + +D+ ++ ++EI + T K++ D + AKEKEI E
Sbjct: 133 RDANDDIKKMEKTDISEDESRKYQEEIQKTTDKFIAEVDKVLAAKEKEIME 183
>gi|436842900|ref|YP_007327278.1| ribosome recycling factor [Desulfovibrio hydrothermalis AM13 = DSM
14728]
gi|432171806|emb|CCO25179.1| ribosome recycling factor [Desulfovibrio hydrothermalis AM13 = DSM
14728]
Length = 185
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L + KLRTGRAS ++D I V+ G P+N LA VS+ DS+T++I P+D
Sbjct: 13 MEGALTSLESDFGKLRTGRASTSLVDQISVDYYGTPTPINQLASVSIPDSRTVAIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+E A++ S LGLNP DG+ L +IP LT+E + + K+ K +ED K ++R R
Sbjct: 73 GAFPLIEKALMLSDLGLNPVNDGKLLRISIPLLTEERRKELVKIAKKYTEDSKVALRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D+ ++ + ++ ++T YVK D+ C AKEKEI E
Sbjct: 133 RDMNDTLKKLEKDKEISEDEQRKAQDDVQKMTDLYVKKCDEACNAKEKEILE 184
>gi|384159365|ref|YP_005541438.1| ribosome recycling factor [Bacillus amyloliquefaciens TA208]
gi|384168411|ref|YP_005549789.1| ribosome recycling factor [Bacillus amyloliquefaciens XH7]
gi|328553453|gb|AEB23945.1| ribosome recycling factor [Bacillus amyloliquefaciens TA208]
gi|341827690|gb|AEK88941.1| ribosome recycling factor [Bacillus amyloliquefaciens XH7]
Length = 185
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRA+P +LD + VE G + PLN L+ ++V +++ L + PYD
Sbjct: 13 MEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVSEARMLVVTPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI+ + LG+ P DG + AIPALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + D +KK + +D+++ +++ +LT ++V D + K KEKEI E
Sbjct: 133 RDSNDELKKLEKNGDITEDELRASSEDVQKLTDEFVSKIDSVTKDKEKEIME 184
>gi|387927006|ref|ZP_10129685.1| ribosome recycling factor [Bacillus methanolicus PB1]
gi|387589150|gb|EIJ81470.1| ribosome recycling factor [Bacillus methanolicus PB1]
Length = 185
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI A +REL +R GRAS +LD + VE GV P+N LA ++V + + L I PYD
Sbjct: 13 MTKAIQAYTRELASIRAGRASASLLDRVTVEYYGVPTPVNQLAGITVPEPRLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI+ S LGLNP DG + AIP LT+E + + KVV K SE+ K +IR R
Sbjct: 73 SIIGEIEKAILKSDLGLNPTSDGSLIRIAIPQLTEERRKELAKVVKKESEEAKVAIRNIR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK S + +D ++ +I +LT +++ D I K KEKEI E
Sbjct: 133 RDANDDLKKLEKSGEITEDDLRGYSDDIQKLTDEHINKIDQITKDKEKEILE 184
>gi|297571182|ref|YP_003696956.1| ribosome recycling factor [Arcanobacterium haemolyticum DSM 20595]
gi|296931529|gb|ADH92337.1| ribosome recycling factor [Arcanobacterium haemolyticum DSM 20595]
Length = 185
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 111/173 (64%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI + +K+R+GRA+P + ++V+ G PL LA VSV +++T+ I+PYD
Sbjct: 13 MGKAIEVAQSDFSKIRSGRANPELFTSLVVDYYGAPTPLQQLATVSVPEARTVLISPYDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++E AI S LG+NP DGQ L +PALT+E + K+ +ED + SIR R
Sbjct: 73 SAMKDIERAIQESDLGVNPTDDGQVLRINLPALTEERRREYVKLAKGKAEDARISIRAIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD +KK G + +D ++R EKE++ LTKK+V++ D + ++KEKE+ E
Sbjct: 133 RKAKETLDKIKKDGDA-GEDDVERAEKELESLTKKFVENVDSLLESKEKELME 184
>gi|392957549|ref|ZP_10323072.1| ribosome recycling factor [Bacillus macauensis ZFHKF-1]
gi|391876512|gb|EIT85109.1| ribosome recycling factor [Bacillus macauensis ZFHKF-1]
Length = 185
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I A RELT +R GRA+P +LD I V+ G PLN +A ++V +++ L I PYD
Sbjct: 13 MKKGISAFQRELTSVRAGRANPSLLDRITVDYYGAATPLNQMAGITVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L ++E AI S LGL DGQ + AIPALT+E + + K+V K E+ K ++R R
Sbjct: 73 TVLGDIEKAIQKSDLGLTTSNDGQIIRIAIPALTEERRKELVKLVKKYGEEAKVALRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KKA + +D+++R +++ +LT K++ D + KE+EI E
Sbjct: 133 RDANDELKKAEKDGEITEDELRRYTEDVQKLTDKHISEVDQVATNKEQEIME 184
>gi|311068174|ref|YP_003973097.1| ribosome recycling factor [Bacillus atrophaeus 1942]
gi|419823845|ref|ZP_14347379.1| ribosome recycling factor [Bacillus atrophaeus C89]
gi|310868691|gb|ADP32166.1| ribosome recycling factor [Bacillus atrophaeus 1942]
gi|388472084|gb|EIM08873.1| ribosome recycling factor [Bacillus atrophaeus C89]
Length = 185
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A REL +R GRA+P +LD + VE G + PLN L+ ++V +++ L I PYD
Sbjct: 13 MEKAVAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI+ + LG+ P DG + AIPALT+E + + K+V K +E+ K ++R R
Sbjct: 73 TAIGDIEKAILKADLGVTPTSDGNIIRIAIPALTEERRKELVKLVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ +++ +LT +YV D + K KEKEI E
Sbjct: 133 RDANDDLKKLEKNGDITEDELRTSNEDVQKLTDEYVSKIDSVTKDKEKEIME 184
>gi|407769008|ref|ZP_11116385.1| Ribosome recycling factor [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407287928|gb|EKF13407.1| Ribosome recycling factor [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 187
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L +E T LRTGRAS +L+ ++VE GV PLN +A VSV +S+ LS+ +D
Sbjct: 15 MEGAVEVLHKEFTGLRTGRASASLLEPVMVEAYGVPTPLNQVASVSVPESRMLSVQVWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AI S LGLNP DG + IPAL +E + KV K +E K S+R R
Sbjct: 75 SMVKSVEKAIRDSGLGLNPAADGTLVRVPIPALNEERRAELSKVAGKYAEQAKISVRNVR 134
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KK S + KD + EKEI +LT K + D++ KE+EI
Sbjct: 135 RDGIDQIKKWEKDSVISKDDLHNEEKEIQKLTDKVISEIDEVLAHKEQEI 184
>gi|242278734|ref|YP_002990863.1| ribosome recycling factor [Desulfovibrio salexigens DSM 2638]
gi|242121628|gb|ACS79324.1| ribosome recycling factor [Desulfovibrio salexigens DSM 2638]
Length = 185
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ AL + KLRTGRA+ ++D+I V+ G P+N LA VS+ DS+T+SI P+D
Sbjct: 13 MEGALTALENDFAKLRTGRAATSLVDNISVDYYGTPTPINQLASVSIPDSRTISIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ A+ S LGLNP DG+ L AIP LT+E + + K+ K +ED K +IR R
Sbjct: 73 GAFPLIDKALQQSDLGLNPVNDGKVLRIAIPPLTEERRKELVKIAKKYTEDSKIAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D+ ++ + ++ ++T YVK D C KEKEI E
Sbjct: 133 RDMNDTLKKLEKDKDISEDEQRKAQDDVQKITDGYVKKCDVACGEKEKEILE 184
>gi|169830793|ref|YP_001716775.1| ribosome recycling factor [Candidatus Desulforudis audaxviator
MP104C]
gi|169637637|gb|ACA59143.1| ribosome recycling factor [Candidatus Desulforudis audaxviator
MP104C]
Length = 174
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 101/173 (58%), Gaps = 3/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I L RE LR GRA+P +LD I V+ G +P+N LA VSV +++ L I P+D
Sbjct: 1 MMKTIEVLDREFASLRAGRATPALLDRITVDYYGSTIPINQLATVSVPEARLLVIQPWDK 60
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI+ S LG+ P DG + A+P LT+E + + K + K E+ K ++R R
Sbjct: 61 SAIGEIERAILKSDLGITPSSDGNIIRLAVPQLTEERRRDLVKFLKKRGEEAKVAVRNIR 120
Query: 121 QKALDMMK---KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ ++ +K K G +D ++R + E +LT +YVK D I AKEKE+ E
Sbjct: 121 RDVIERLKALQKEGGGFSEDDLRREQDEAQKLTDRYVKEIDRIVAAKEKEVME 173
>gi|323701848|ref|ZP_08113518.1| ribosome recycling factor [Desulfotomaculum nigrificans DSM 574]
gi|333923698|ref|YP_004497278.1| ribosome-recycling factor [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323533152|gb|EGB23021.1| ribosome recycling factor [Desulfotomaculum nigrificans DSM 574]
gi|333749259|gb|AEF94366.1| Ribosome-recycling factor [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 184
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 108/169 (63%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + + +E LR GRA+P +LD ++V G PLN LA +SV ++++L I P+D
Sbjct: 13 MKKTVEVVRKEFASLRAGRATPALLDKVVVSYYGTPTPLNQLANISVPEARSLVIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L E+E AI+ S LG+ P DG + IP LT+E + KVV K +E+ + +IR R
Sbjct: 73 SALPEIERAILKSDLGITPTSDGTVIRLTIPQLTQERRAELVKVVKKKAEEGRVAIRNIR 132
Query: 121 QKALDMMK-KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ +D +K K +P+D++KR ++++ ++T K++K D++ K+KE+EI
Sbjct: 133 REVIDQIKAKQKEGVPEDEVKRGQEDMQKITDKFIKEIDEMVKSKEQEI 181
>gi|308173615|ref|YP_003920320.1| ribosome recycling factor [Bacillus amyloliquefaciens DSM 7]
gi|384164201|ref|YP_005545580.1| ribosome recycling factor [Bacillus amyloliquefaciens LL3]
gi|307606479|emb|CBI42850.1| ribosome recycling factor [Bacillus amyloliquefaciens DSM 7]
gi|328911756|gb|AEB63352.1| ribosome recycling factor [Bacillus amyloliquefaciens LL3]
Length = 185
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRA+P +LD + VE G + PLN L+ ++V +++ L + PYD
Sbjct: 13 MEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVVTPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI+ + LG+ P DG + AIPALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + D +KK + +D+++ +++ +LT ++V D + K KEKEI E
Sbjct: 133 RDSNDELKKLEKNGDITEDELRASSEDVQKLTDEFVSKIDSVTKDKEKEIME 184
>gi|86610317|ref|YP_479079.1| ribosome recycling factor [Synechococcus sp. JA-2-3B'a(2-13)]
gi|123500677|sp|Q2JHW2.1|RRF_SYNJB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|86558859|gb|ABD03816.1| ribosome recycling factor [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 182
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ A R +RTGRA+ +LD I VE GV PL LA ++ DS TL I P+DP
Sbjct: 10 MNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSSTLLIQPFDP 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TL +E AIV+S LGL P DG+ + IP LT+E + + K VAK +E+ + SIR R
Sbjct: 70 STLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAKLAEEGRVSIRNIR 129
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D ++K L +D+ K L+ +I +LT +Y+K D++ KEKE+
Sbjct: 130 RDGIDSVRKREKNGELSEDESKSLQDDIQKLTDRYIKKIDELLAEKEKEL 179
>gi|313679984|ref|YP_004057723.1| ribosome recycling factor [Oceanithermus profundus DSM 14977]
gi|313152699|gb|ADR36550.1| ribosome recycling factor [Oceanithermus profundus DSM 14977]
Length = 185
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + L LRTGRA+P +L+HI V+ G MPLN LA +S D++TL + +D
Sbjct: 13 MQKTLEVFESNLATLRTGRANPALLEHIKVDYYGSMMPLNQLASISAPDARTLVVQAWDQ 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L +E AI S LGLNP G L IPALT E + + K +E+ + ++R R
Sbjct: 73 NALPLIEKAIRDSDLGLNPNNQGDTLFINIPALTAERRKEIVKAAHNYAEEARVAVRNIR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ AL +KK LP+D +KR EKE+ ELT ++++ + +AKEKEI
Sbjct: 133 RDALHRIKKMSEEEHLPEDDVKRAEKEVQELTDEFIEKINAELEAKEKEI 182
>gi|302837099|ref|XP_002950109.1| hypothetical protein VOLCADRAFT_80962 [Volvox carteri f.
nagariensis]
gi|300264582|gb|EFJ48777.1| hypothetical protein VOLCADRAFT_80962 [Volvox carteri f.
nagariensis]
Length = 266
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 98/157 (62%), Gaps = 2/157 (1%)
Query: 12 LTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIV 71
+RTGRA+P +LD I V+ G PL + V+V DS+TL I P+D +TLK++E AI
Sbjct: 109 FNTIRTGRANPAILDKITVDYFGAPTPLKQMGAVTVPDSQTLMIAPFDRSTLKDIERAIQ 168
Query: 72 SSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG 131
S +G+NP DG+R+ +P +T+E + + K V+K +ED K ++R R+ A+ + K
Sbjct: 169 ESDIGINPNNDGERIRLVMPPMTQERRKDLAKQVSKMTEDGKVAVRNVRKDAMKKVDKV- 227
Query: 132 SSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
LPKD K LE +I +LT YVK DD+ KAK E+
Sbjct: 228 -ELPKDDKKALEDDIQKLTDLYVKKLDDMAKAKTDEV 263
>gi|317484674|ref|ZP_07943575.1| ribosome recycling factor [Bilophila wadsworthia 3_1_6]
gi|316924030|gb|EFV45215.1| ribosome recycling factor [Bilophila wadsworthia 3_1_6]
Length = 186
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 109/170 (64%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ AL R+ ++LRTGRAS G++D+I V+ G P++ LA V++ DS+T++I P+D
Sbjct: 14 MDKALGALDRDFSRLRTGRASTGLVDNIKVDYYGTPTPISQLASVAIPDSRTITIQPWDR 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+E AI+ S LGL P DG+ + +IP LT++ + + K+ K+ E+ K ++R R
Sbjct: 74 GAFAGVEKAILKSDLGLTPVNDGKIIRISIPPLTEDRRKELGKLARKSGEEAKVAVRNVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK ++ +D++K+ ++ +LT +YV D+ C AKEKEI
Sbjct: 134 RDANDQLKKLEKDKAISEDELKKATDDVQKLTDRYVAKVDEKCAAKEKEI 183
>gi|421879779|ref|ZP_16311236.1| Ribosome-recycling factor [Leuconostoc citreum LBAE C11]
gi|390446333|emb|CCF27356.1| Ribosome-recycling factor [Leuconostoc citreum LBAE C11]
Length = 181
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 103/168 (61%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL RELT +RTGRA+P +LD I VE G PLN +A +SV +++ L I P+D
Sbjct: 12 MQGAQDALQRELTSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEARVLLITPFDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+E+ AI S LGLNP DG + IP +T+E + + K V +E K S+R R
Sbjct: 72 TALEEIIRAINMSDLGLNPSSDGNIVRLMIPQMTEEGRKDLAKQVKAEAEKAKVSVRNVR 131
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK +P+D +++ E +I +LT +K+ DDI KEKE+
Sbjct: 132 RDAMDSVKK-DKEMPEDDVRKAENDIQKLTDNNIKAIDDIASEKEKEL 178
>gi|288553032|ref|YP_003424967.1| ribosome recycling factor [Bacillus pseudofirmus OF4]
gi|288544192|gb|ADC48075.1| ribosome recycling factor [Bacillus pseudofirmus OF4]
Length = 185
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI +L+REL KLR GRA+P +LD + VE G + PLN LA ++V +++ L I P+D
Sbjct: 13 MTKAIESLNRELAKLRAGRANPAILDRVTVEYYGAETPLNQLATITVPEARLLMIQPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI + LGL P DG + AIP LT+E + + K+V K++E+ K ++R R
Sbjct: 73 TSMNDIERAIQKADLGLTPSNDGTVIRIAIPPLTEERRRELVKLVKKSAEEGKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++R ++ +LT K++ D + KEKEI E
Sbjct: 133 RDANDDLKKLQKDGEMTEDELRRYTDDVQKLTDKHISDIDAVADKKEKEIME 184
>gi|258406064|ref|YP_003198806.1| ribosome recycling factor [Desulfohalobium retbaense DSM 5692]
gi|257798291|gb|ACV69228.1| ribosome recycling factor [Desulfohalobium retbaense DSM 5692]
Length = 184
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 108/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI L +E ++LRTGRAS ++D I V PLN LA +S+ D++T++I P+D
Sbjct: 12 MEKAITNLEKEFSRLRTGRASASLVDGIQVSYYNTPTPLNQLASISIPDARTIAIQPWDR 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ + +E AI+ S LGLNP DG+ + IPALT+E + + K+ K +ED K +IR R
Sbjct: 72 SSFENIEKAIMQSDLGLNPVNDGKIIRINIPALTEERRKELVKIAKKHTEDAKIAIRNIR 131
Query: 121 QKALDMMKKAGS--SLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + +KK + ++ +D M R +++I +LT ++V A+ KEKEI E
Sbjct: 132 RDANEELKKQKNDKTISEDDMHRGQEKIQKLTDEFVDKAEKTLTEKEKEIME 183
>gi|442804820|ref|YP_007372969.1| ribosome-recycling factor Frr [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740670|gb|AGC68359.1| ribosome-recycling factor Frr [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 184
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + L EL +R GRA+P +LD + VE GV P+N LA ++V +++ + I P+DP
Sbjct: 12 MDKTVAILKEELVNIRAGRANPRILDKVTVEYYGVPTPINQLANINVPEARQIVIQPWDP 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+E AI++S LGLNP DG+ + P LT+E + K V K E+ K +IR+ R
Sbjct: 72 KILSEIEKAIIASNLGLNPNNDGKVIRLIFPPLTEERRVELTKQVKKVGENAKVAIRQVR 131
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ AL+ K K + + +D +K +E++I ++T Y++ D + +AK KEI E
Sbjct: 132 RDALEQYKKMKKNAEITEDDLKEIEEDIQKITDNYIEDIDKLLEAKIKEIME 183
>gi|194015089|ref|ZP_03053706.1| ribosome recycling factor [Bacillus pumilus ATCC 7061]
gi|194014115|gb|EDW23680.1| ribosome recycling factor [Bacillus pumilus ATCC 7061]
Length = 185
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A REL +R GRA+ +LD + V+ G + PLN +A ++V +++ L I PYD
Sbjct: 13 MEKAVQAYGRELATVRAGRANASLLDKVTVDYYGAQTPLNQIASITVPEARMLIITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E +I S LG+ P DG + AIPALT+E + + KVV K SE+ K ++R R
Sbjct: 73 TAIGDIEKSIQKSDLGITPTSDGNVIRIAIPALTEERRKELVKVVRKYSEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ +++ +LT +YV DD+ K KEKEI E
Sbjct: 133 RDANDELKKLEKNGEITEDELRSSTEDVQKLTDEYVAKIDDVTKDKEKEIME 184
>gi|421876656|ref|ZP_16308211.1| Ribosome-recycling factor [Leuconostoc citreum LBAE C10]
gi|372557530|emb|CCF24331.1| Ribosome-recycling factor [Leuconostoc citreum LBAE C10]
Length = 181
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 103/168 (61%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL RELT +RTGRA+P +LD I VE G PLN +A +SV +++ L I P+D
Sbjct: 12 MQGAQDALQRELTSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEARVLLITPFDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+E+ AI S LGLNP DG + IP +T+E + + K V +E K S+R R
Sbjct: 72 TALEEIIRAINMSDLGLNPSSDGNIVRLMIPQMTEEGRKDLAKQVKAEAEKAKVSVRNVR 131
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK +P+D +++ E +I +LT +K+ DDI KEKE+
Sbjct: 132 RDAMDSVKK-DKEMPEDDVRKAENDIQKLTDNNIKAIDDIVSEKEKEL 178
>gi|145349027|ref|XP_001418942.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579172|gb|ABO97235.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 238
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 102/168 (60%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
+AA+ AL +L++LRT RAS GM+DHIIV+ G PL+HL ++ +++TLS+ +DP
Sbjct: 70 FDAALHALDVDLSQLRTARASAGMIDHIIVDVYGEPTPLSHLGTITAPNAQTLSVTLFDP 129
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+T +E AIV+SPLG P+ LI IPA+T++ + +CK+ +K E K + R R
Sbjct: 130 STKPSVEKAIVNSPLGFVPKESSDGLIVPIPAMTQDTRKEVCKLASKLGETAKIAARNIR 189
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KA +K+A + +D KR EK + LT V C AKEKEI
Sbjct: 190 HKAQKRIKRA--EMSEDDRKRAEKNLQALTDDIVGKITQRCAAKEKEI 235
>gi|170017339|ref|YP_001728258.1| ribosome recycling factor [Leuconostoc citreum KM20]
gi|414597764|ref|ZP_11447322.1| Ribosome-recycling factor [Leuconostoc citreum LBAE E16]
gi|190360251|sp|B1MZ62.1|RRF_LEUCK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|169804196|gb|ACA82814.1| Ribosome recycling factor [Leuconostoc citreum KM20]
gi|390481493|emb|CCF29383.1| Ribosome-recycling factor [Leuconostoc citreum LBAE E16]
Length = 181
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 103/168 (61%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL RELT +RTGRA+P +LD I VE G PLN +A +SV +++ L I P+D
Sbjct: 12 MQGAQDALQRELTSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEARVLLITPFDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+E+ AI S LGLNP DG + IP +T+E + + K V +E K S+R R
Sbjct: 72 TALEEIIRAINMSDLGLNPSSDGNIVRLMIPQMTEEGRKDLAKQVKAEAEKAKVSVRNVR 131
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK +P+D +++ E +I +LT +K+ DDI KEKE+
Sbjct: 132 RDAMDSVKKE-KEMPEDDVRKAENDIQKLTDNNIKAIDDIASEKEKEL 178
>gi|256830146|ref|YP_003158874.1| ribosome recycling factor [Desulfomicrobium baculatum DSM 4028]
gi|256579322|gb|ACU90458.1| ribosome recycling factor [Desulfomicrobium baculatum DSM 4028]
Length = 184
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I +L ++ +KLRTGRAS ++D I VE G PLN +A VS+ DS+T+SI+P+D
Sbjct: 12 MQKSIDSLEKDFSKLRTGRASTALVDSIRVEYYGTPTPLNQVASVSIPDSRTISISPWDR 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N +E AI+ S LGL P DG+ + IP LT+E + + K+ K +E+ K +IR R
Sbjct: 72 NAFNSIEKAIMKSDLGLTPINDGRAIRINIPVLTEERRKDLVKMAKKYTEEAKVAIRNVR 131
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK ++ + +D + + + E+ + T +VK AD + KEKEI E
Sbjct: 132 RDVNDALKKMHTAKEISEDDLHKAQDEVQKTTDNFVKKADAVLAEKEKEIME 183
>gi|340794662|ref|YP_004760125.1| ribosome-recycling factor [Corynebacterium variabile DSM 44702]
gi|340534572|gb|AEK37052.1| ribosome-recycling factor [Corynebacterium variabile DSM 44702]
Length = 185
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ + +LT +RTGRA+P M + + E G++ P+ +A +SV + + L I PY+
Sbjct: 13 MSRSVDHVREDLTTIRTGRANPAMFNRVFAEYYGMRTPITQMATISVPEPRMLIIKPYEM 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E+E AI +S LG+NP DGQ L IP LT+E + + KV ED K SIR R
Sbjct: 73 SVMQEIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKDLVKVARGKGEDAKISIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K +D +KK +D+++ EKE+D++T+ YV D++ +KEKE+ E
Sbjct: 133 RKGMDSLKKIQKDGDAGEDEVQAAEKELDKITQGYVAQVDEVVSSKEKELME 184
>gi|297584070|ref|YP_003699850.1| ribosome recycling factor [Bacillus selenitireducens MLS10]
gi|297142527|gb|ADH99284.1| ribosome recycling factor [Bacillus selenitireducens MLS10]
Length = 185
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ + REL +R GRA+P +LD + VE G+ PLN LA +SV + + L + P+D
Sbjct: 13 MNKSLESFGRELGSVRAGRANPSILDRVQVEYYGMMTPLNQLATISVPEGRLLVVQPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L ++E AI + LGL+P DG + +IPALT+E + + KVV + +ED K ++R R
Sbjct: 73 SSLPDIEKAIQKADLGLSPSNDGNIIRISIPALTEERRKELIKVVGRYAEDAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++R + ++ +LT Y+K D+ KAKE +I E
Sbjct: 133 RDANDELKKLEKDGEMTEDELRRGQDDVQKLTDDYIKKIDERVKAKENDIKE 184
>gi|421860619|ref|ZP_16292725.1| ribosome recycling factor [Paenibacillus popilliae ATCC 14706]
gi|410829805|dbj|GAC43162.1| ribosome recycling factor [Paenibacillus popilliae ATCC 14706]
Length = 184
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 102/171 (59%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AIVAL R+L R GRAS +LD I VE G P+N LA +S D +TL I P+D
Sbjct: 13 MEKAIVALKRDLATQRAGRASAALLDRIQVEYYGAMTPINQLANISTPDPRTLLIQPWDN 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L E+E A++ S LGL P DG + +IPALT+E + + K ED K +IR R
Sbjct: 73 SSLGEIERAVMKSDLGLTPANDGSIIRISIPALTQERRTELVRQTKKFGEDAKVAIRNIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + + +D R +++I ++T KY+ D + AKEK+I E
Sbjct: 133 RDANDDIKKLEKTDISEDDSHRHQEDIQKMTDKYIAEVDKVLAAKEKDIME 183
>gi|317132574|ref|YP_004091888.1| ribosome recycling factor [Ethanoligenens harbinense YUAN-3]
gi|315470553|gb|ADU27157.1| ribosome recycling factor [Ethanoligenens harbinense YUAN-3]
Length = 183
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M + AL E +R GRA+P +LD + V+ G P+N +A VSV +++ L+I P+D
Sbjct: 11 MTKTVAALESEYGTIRAGRANPAILDKVRVDYYGTPTPINQIAAVSVTEARNLTIQPWDI 70
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI +S LG+NP+ DG+ + A P LT+E + + K V K ED K +IR R
Sbjct: 71 TQLRAIEKAIYASDLGVNPQNDGKIIRIAFPPLTEERRKELVKTVRKYGEDAKVAIRSIR 130
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A++ +K K G L +D +K EK++ + T ++ K D I KEKEI E
Sbjct: 131 RDAIESLKEQKKGGELTEDDLKDAEKKVQDATDRFCKEIDGIAAKKEKEIME 182
>gi|282890409|ref|ZP_06298937.1| ribosome recycling factor [Parachlamydia acanthamoebae str. Hall's
coccus]
gi|338174030|ref|YP_004650840.1| ribosome-recycling factor [Parachlamydia acanthamoebae UV-7]
gi|281499791|gb|EFB42082.1| ribosome recycling factor [Parachlamydia acanthamoebae str. Hall's
coccus]
gi|336478388|emb|CCB84986.1| ribosome-recycling factor [Parachlamydia acanthamoebae UV-7]
Length = 183
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 103/171 (60%), Gaps = 2/171 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEAA+ L +L +RTG+A+PGMLD I VE G +M L +A ++ +++ L I P+D
Sbjct: 11 MEAALEHLKNDLNSIRTGQANPGMLDGITVEVYGSQMRLRDIATINSPEARQLLITPFDA 70
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
T + +I + LG P VDG + IP + + + M K+ K E+ K +IR R
Sbjct: 71 GTAGAIGKSIERANLGFMPIVDGNAVRIKIPPMDESLRKEMAKLCHKKQEEAKVAIRNHR 130
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
+ A D+++ KA LP+DQMK+ EKEI ELT KY K AD+I KEKEI+
Sbjct: 131 RDANDLVRKQKAAGELPEDQMKKQEKEIQELTDKYCKLADEIAAKKEKEIS 181
>gi|149921516|ref|ZP_01909967.1| ribosome recycling factor [Plesiocystis pacifica SIR-1]
gi|149817591|gb|EDM77059.1| ribosome recycling factor [Plesiocystis pacifica SIR-1]
Length = 185
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M++A L+REL+++R GRA+P +LD + VE GV+M L +A VS D++ L + P+D
Sbjct: 13 MKSAQERLARELSRVRAGRANPALLDGVRVEAYGVQMSLREVATVSTADARLLIVKPFDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
NT+ +E AI++S LGLNP DG L IP LT+E +++ K V +E+ K +IR R
Sbjct: 73 NTISSVEKAIMNSGLGLNPSSDGVVLRVPIPPLTEERRRSLVKQVKDQAEEAKIAIRSGR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ D++K A + +D++KR ++ ELT +YV D K KE EI
Sbjct: 133 REGNDLLKGAEKDKEISEDELKRGLDKVQELTNRYVAMIDSAVKKKESEI 182
>gi|157692331|ref|YP_001486793.1| ribosome recycling factor [Bacillus pumilus SAFR-032]
gi|166991553|sp|A8FDB6.1|RRF_BACP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|157681089|gb|ABV62233.1| peptide chain release factor RF4 [Bacillus pumilus SAFR-032]
Length = 185
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A REL +R GRA+ +LD + V+ G + PLN +A ++V +++ L I PYD
Sbjct: 13 MEKAVQAYGRELATVRAGRANASLLDKVTVDYYGAQTPLNQIASITVPEARMLIITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E +I S LG+ P DG + AIPALT+E + + KVV K SE+ K ++R R
Sbjct: 73 TAIGDIEKSIQKSDLGITPTSDGNVIRIAIPALTEERRKELVKVVRKYSEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ +++ +LT +YV DD+ K KEKEI E
Sbjct: 133 RDANDELKKLEKNGEITEDELRSSTEDVQKLTDEYVAKIDDVMKDKEKEIME 184
>gi|158320548|ref|YP_001513055.1| ribosome recycling factor [Alkaliphilus oremlandii OhILAs]
gi|166991552|sp|A8MHH2.1|RRF_ALKOO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|158140747|gb|ABW19059.1| ribosome recycling factor [Alkaliphilus oremlandii OhILAs]
Length = 185
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I AL EL +R GRA+P MLD I+VE G P+ +A ++ + + +SI PYD
Sbjct: 13 MNKTINALKDELASIRAGRANPAMLDRIVVEYYGSPTPIKQIAAITAPEPRIISIQPYDG 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LG+NP DG+ + +P LT+E + + KV KTSED K +R R
Sbjct: 73 SALSSIEKAILQSDLGVNPSNDGKLIRIIVPQLTEERRKELTKVAKKTSEDAKVVLRNER 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + + +D++K + E+ ++T K++K D++ + KEK+I E
Sbjct: 133 RNANDRLKKMQKDNEITEDELKTAQDEVQKITDKFIKMVDELTEKKEKDIME 184
>gi|78045140|ref|YP_360604.1| ribosome recycling factor [Carboxydothermus hydrogenoformans
Z-2901]
gi|123575922|sp|Q3AB80.1|RRF_CARHZ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|77997255|gb|ABB16154.1| ribosome recycling factor [Carboxydothermus hydrogenoformans
Z-2901]
Length = 185
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L +E +R GRA+P +L+ ++VE G +MP+N LA +S + + L I P+D
Sbjct: 13 MQKAIEVLKKEFATMRVGRATPALLEKVVVEYYGTQMPVNQLATISAPEPRLLVIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI+ S LG+ P DG + AIP LT+E Q + KV K +E+ + +IR R
Sbjct: 73 GALGAIEKAILKSDLGITPTNDGSVIRLAIPPLTQERRQELVKVARKKAEEARVAIRNIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K + + +D+ KR + E+ +LT K++K+ D++ KAKE EI
Sbjct: 133 RDANDRIKDLEKDKVISEDEGKRGQDEVQKLTDKFIKTVDELLKAKEDEI 182
>gi|86605415|ref|YP_474178.1| ribosome recycling factor [Synechococcus sp. JA-3-3Ab]
gi|86553957|gb|ABC98915.1| ribosome recycling factor [Synechococcus sp. JA-3-3Ab]
Length = 182
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ A R +RTGRA+ +LD I VE GV PL LA ++ DS TL I P+DP
Sbjct: 10 MNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSSTLLIQPFDP 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TL +E AIV+S LGL P DG+ + IP LT+E + + K VAK +E+ + SIR R
Sbjct: 70 STLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAKLAEEGRVSIRNIR 129
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D ++K L +D+ K L+ I +LT +Y+K D++ KEKE+
Sbjct: 130 RDGIDSVRKREKNGELSEDESKSLQDAIQKLTDRYIKKIDELLAEKEKEL 179
>gi|229552426|ref|ZP_04441151.1| ribosome recycling factor [Lactobacillus rhamnosus LMS2-1]
gi|258539797|ref|YP_003174296.1| ribosome recycling factor [Lactobacillus rhamnosus Lc 705]
gi|385835448|ref|YP_005873222.1| ribosome recycling factor [Lactobacillus rhamnosus ATCC 8530]
gi|229314163|gb|EEN80136.1| ribosome recycling factor [Lactobacillus rhamnosus LMS2-1]
gi|257151473|emb|CAR90445.1| Ribosome-recycling factor [Lactobacillus rhamnosus Lc 705]
gi|355394939|gb|AER64369.1| ribosome recycling factor [Lactobacillus rhamnosus ATCC 8530]
Length = 185
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L REL +R GRA+ +L+ I V+ G PLN +A ++V +++ L I+PYD ++LK +
Sbjct: 19 SLQRELGNIRAGRANASLLNQITVDYYGAPTPLNQMAAITVPEARVLQISPYDKSSLKNI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI +S LG+NP DG + IP LT E + + K V K SE+ K +IR R++ LD
Sbjct: 79 ETAINASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKFSENAKIAIRNIRREGLDK 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K+ + +D++ RLEK++ + T K D+I AKEKEI E
Sbjct: 139 LKRQEKDGDITEDELHRLEKDMQKATDDATKRIDEIAAAKEKEITE 184
>gi|163119440|ref|YP_079046.2| ribosome recycling factor [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319645965|ref|ZP_08000195.1| ribosome-recycling factor [Bacillus sp. BT1B_CT2]
gi|404489143|ref|YP_006713249.1| ribosome recycling factor [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423682197|ref|ZP_17657036.1| ribosome recycling factor [Bacillus licheniformis WX-02]
gi|60390243|sp|Q65JJ6.1|RRF_BACLD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|52348134|gb|AAU40768.1| ribosome-recycling factor Frr [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|145902947|gb|AAU23408.2| ribosome recycling factor [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|317391715|gb|EFV72512.1| ribosome-recycling factor [Bacillus sp. BT1B_CT2]
gi|383438971|gb|EID46746.1| ribosome recycling factor [Bacillus licheniformis WX-02]
Length = 185
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI A REL +R GRA+P +LD + VE G + PLN +A ++V +++ L I PYD
Sbjct: 13 MQKAISAYQRELATVRAGRANPSLLDKVAVEYYGAQTPLNQIASITVPEARMLVITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L ++E AI + LG+ P DG + IP LT+E + + K+V K SED K ++R R
Sbjct: 73 TALGDIEKAIQKADLGVTPSNDGNIIRITIPPLTEERRKELAKLVKKYSEDAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ +++ +LT +YV D+I K KEKEI E
Sbjct: 133 RDANDDLKKLEKNGEMTEDELRSSTEDVQKLTDEYVSKIDEITKDKEKEIME 184
>gi|383753427|ref|YP_005432330.1| putative ribosome-recycling factor [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365479|dbj|BAL82307.1| putative ribosome-recycling factor [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 185
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I AL RE LR GRA+P +LD ++V+ G P+N +A V+V + + + I PY+
Sbjct: 13 MQKSIDALKREFGSLRAGRATPSLLDKVMVDYYGTPTPVNQIAKVAVPEPRMIMIQPYEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L E+E AI+ S LGL+P DG + AIPALT+E Q + K V K +E+ K +IR R
Sbjct: 73 SMLHEVEVAIMKSDLGLSPNSDGTAIRLAIPALTQERRQELVKTVNKKAEEAKVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK G + +D+ K+ ++ + +L KYVK D KEKE+ E
Sbjct: 133 RDGNDAIKKLEKGKEITEDESKKAQESMQKLADKYVKVVDTARAGKEKEVME 184
>gi|307106026|gb|EFN54273.1| hypothetical protein CHLNCDRAFT_135841 [Chlorella variabilis]
Length = 177
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L EL+ +RTGRA+PGMLDH+ V+ G ++PL VSV D + L I +D
Sbjct: 8 MERALAHLQGELSNIRTGRATPGMLDHLKVDVYGDRLPLKACGSVSVRDPQLLVITVFDV 67
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + + A+ SPL L+PR +GQ ++ IP T E ++AM KV E K S+R +R
Sbjct: 68 DAVPSVVKAVSESPLRLSPRAEGQEVLVPIPRPTIESLEAMMKVCKVEGEQAKVSVRHAR 127
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D KK GS +D+ KR+E+E+ +LT +YV+ + + KEK I
Sbjct: 128 KLAMDAAKKLGS---EDERKRVEREVQKLTDEYVREVEGAVQRKEKSI 172
>gi|304404282|ref|ZP_07385944.1| ribosome recycling factor [Paenibacillus curdlanolyticus YK9]
gi|304347260|gb|EFM13092.1| ribosome recycling factor [Paenibacillus curdlanolyticus YK9]
Length = 184
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 104/171 (60%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI AL R+L LR GRA+P +LD I VE G P+N LA ++ DS+TL + P+D
Sbjct: 13 MEKAIGALKRDLATLRAGRATPALLDRIQVEYYGAMTPVNQLANINTPDSRTLLLQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L +E AI+ S LGL P DG + +IPALT+E + K+ K E+ K ++R R
Sbjct: 73 SSLAAIEKAIMKSDLGLTPSNDGSTIRLSIPALTEERRSELVKLTKKFGEEAKIAVRNIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK ++ +D+ +R + +I + T ++V D + AKEKEI E
Sbjct: 133 RDANDDIKKLEKDAISEDESRRHQDDIQKTTDRFVGEVDKVLAAKEKEIME 183
>gi|342216828|ref|ZP_08709475.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 375 str.
F0436]
gi|341587718|gb|EGS31118.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 375 str.
F0436]
Length = 185
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I L +L +R GRA+P +LD I V+ G PLN +A +S + + L+I P+D
Sbjct: 13 MKKTIQVLEEDLQAIRAGRANPTLLDRIHVDYYGQSTPLNQMAGISAPEPRLLTIQPWDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + E+E AI+ S LGLNP DG+ + IP LT+E + + KVV K ED K +IR R
Sbjct: 73 NAIPEIEKAILKSDLGLNPSNDGKLVRLVIPQLTEERRKELIKVVKKDGEDSKVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++ +D +KK + +D++K EK+I +LT KY+K D + + KEKE+ E
Sbjct: 133 REMVDSVKKMEKDKEISEDELKVAEKDIQDLTDKYIKEIDAVVERKEKELLE 184
>gi|389573225|ref|ZP_10163300.1| ribosome recycling factor [Bacillus sp. M 2-6]
gi|388426922|gb|EIL84732.1| ribosome recycling factor [Bacillus sp. M 2-6]
Length = 185
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A REL +R GRA+ +LD + V+ G + PLN +A ++V +++ L I PYD
Sbjct: 13 MEKAVQAYGRELATVRAGRANASLLDKVTVDYYGAQTPLNQIASITVPEARMLIITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI S LG+ P DG + AIPALT+E + + KVV K SE+ K ++R R
Sbjct: 73 TAIGDIEKAIQKSDLGITPTSDGNVIRIAIPALTEERRKELVKVVRKYSEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ +++ +LT +YV D++ K KEKEI E
Sbjct: 133 RDANDELKKLEKNGEITEDELRSSTEDVQKLTDEYVAKIDEVTKDKEKEIME 184
>gi|412988542|emb|CCO17878.1| ribosome recycling factor [Bathycoccus prasinos]
Length = 254
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ ++ + +RTGRA+P MLD I V+ G PL L+ + LD++TL I P+D
Sbjct: 82 MEKAMEVMTDNFSTVRTGRANPNMLDRIEVDYYGAMTPLKSLSNTNNLDAQTLVIQPFDK 141
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LKE+E AIV S LG+ P DG + +P LT E + + K V+K E+ K ++R R
Sbjct: 142 GALKEIEKAIVRSDLGITPSNDGSVIRLVVPPLTAERRKELTKQVSKLGEEGKVALRNVR 201
Query: 121 QKALDMMKKAGS--SLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+ +KK + +L +D+ EK+I++LT YVK +D KAKEKE+
Sbjct: 202 RDAMTKIKKMKTDKTLGEDEFASFEKKIEDLTTSYVKKTEDAVKAKEKEL 251
>gi|308806109|ref|XP_003080366.1| COG0233: Ribosome recycling factor (ISS) [Ostreococcus tauri]
gi|116058826|emb|CAL54533.1| COG0233: Ribosome recycling factor (ISS) [Ostreococcus tauri]
Length = 529
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 102/168 (60%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
E A+ AL +L+ LRT RAS GM+DHIIV+ G PL+H+A ++ +++TLS+ +DP
Sbjct: 67 FEQAVHALDVDLSHLRTARASEGMIDHIIVDVYGAPTPLSHVATITAPNAQTLSVTLFDP 126
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+T +E AI++SPLGL PR LI IPA+T++ + +CK+ K E K + R R
Sbjct: 127 STKPSVEKAIMNSPLGLVPRATSDGLIVPIPAMTQDTRKEVCKLAHKLGETAKIAARNIR 186
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KAL +K+A +S +D+ KRLEK + + AK+KEI
Sbjct: 187 HKALKHIKRAAAS--EDEQKRLEKALQAVADDTASKIASRVAAKDKEI 232
>gi|295100640|emb|CBK98185.1| ribosome recycling factor [Faecalibacterium prausnitzii L2-6]
Length = 184
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 109/171 (63%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M++A+ L REL +R GRA+PG+LD + V+ G P+ +A V+V +++TL+I P+D
Sbjct: 12 MKSAVEHLERELKTVRAGRANPGVLDKVTVDYYGSPTPIQQVASVAVSEARTLTITPWDR 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ + AI++S +G+NP DGQ + PA T+E + + K V+K E+ K ++R R
Sbjct: 72 TLLRAISKAILASDVGINPIDDGQTIRLNFPAPTEERRKQLAKEVSKMGEEAKVAVRNVR 131
Query: 121 QKALD---MMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D MKKAG L +D K +E+++ +LT KYVK+ D + K+KEI
Sbjct: 132 RDAMDKAKAMKKAG-ELTEDTQKTMEEDVQKLTDKYVKNIDAAVEEKQKEI 181
>gi|78356175|ref|YP_387624.1| ribosome recycling factor [Desulfovibrio alaskensis G20]
gi|123552884|sp|Q313G7.1|RRF_DESDG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|78218580|gb|ABB37929.1| ribosome recycling factor [Desulfovibrio alaskensis G20]
Length = 184
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ AL RE +LRTGRAS ++D I V+ G P+N LA V+V DS+T++I P+D
Sbjct: 12 MEKAVAALDREFGRLRTGRASTSLVDSIKVDYYGTPTPINQLASVAVPDSRTITIQPWDR 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+E AI+ S LGL P DG+ + ++P LT+E + + KV K +ED K ++R R
Sbjct: 72 GAFALVEKAIMQSDLGLTPINDGKIIRISMPPLTEERRKELVKVAKKYTEDAKVAVRNIR 131
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + +KK ++ +D MKR + E+ +LT +V ++ + KEKEI E
Sbjct: 132 RDANEQIKKMEKDKAITEDDMKRGQDEVQKLTDAFVAKSEKVLAKKEKEIME 183
>gi|407977560|ref|ZP_11158397.1| ribosome recycling factor [Bacillus sp. HYC-10]
gi|407415813|gb|EKF37394.1| ribosome recycling factor [Bacillus sp. HYC-10]
Length = 185
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A REL +R GRA+ +LD + V+ G + PLN +A ++V +++ L I PYD
Sbjct: 13 MEKAVQAYGRELATVRAGRANASLLDKVTVDYYGAQTPLNQIASITVPEARMLIITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI S LG+ P DG + AIPALT+E + + KVV K SE+ K ++R R
Sbjct: 73 TAIGDIEKAIQKSDLGITPTSDGNVIRIAIPALTEERRKELVKVVRKYSEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ +++ +LT +YV D++ K KEKEI E
Sbjct: 133 RDANDDLKKLEKNGEITEDELRSSTEDVQKLTDEYVAKIDEVTKDKEKEIME 184
>gi|317153887|ref|YP_004121935.1| ribosome recycling factor [Desulfovibrio aespoeensis Aspo-2]
gi|316944138|gb|ADU63189.1| ribosome recycling factor [Desulfovibrio aespoeensis Aspo-2]
Length = 184
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 109/172 (63%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL ++ +KLRTGRA+ ++D I+V+ G P+N L+ VSV D+K+++I P+D
Sbjct: 12 MAGAISALEKDFSKLRTGRATTALVDTIVVDYYGTPTPINQLSSVSVPDAKSITIQPWDR 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+E AI +S LGLNP DG+ + +IP LT+E + + KV K +E+ K +IR R
Sbjct: 72 GAFGAVEKAIQTSDLGLNPVNDGKIIRISIPPLTEERRKELVKVAKKYTEECKIAIRNVR 131
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK ++ +D++K+ E ++ +LT +VK ++ + AKEKEI E
Sbjct: 132 RDLNDSLKKLEKDKAISEDELKKGEADVQKLTDDFVKQSEGVLVAKEKEILE 183
>gi|410460706|ref|ZP_11314380.1| ribosome recycling factor [Bacillus azotoformans LMG 9581]
gi|409926760|gb|EKN63914.1| ribosome recycling factor [Bacillus azotoformans LMG 9581]
Length = 185
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI A REL +R GRA+P +LD + V G PLN L+ ++V +++ L I PYD
Sbjct: 13 MNKAIQAFKRELATVRAGRANPSLLDRVSVNYYGAPTPLNQLSSITVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L ++E AI+ + LGLNP DG + AIPALT+E +++ K V +ED K +IR R
Sbjct: 73 SVLNDIEKAILKADLGLNPSNDGTIIRIAIPALTEERRKSLAKDVKAMAEDAKIAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ ++ + T +VK D+I K KEKEI E
Sbjct: 133 RDANDDLKKLEKDGQITEDELRSFSDDVQKETDNHVKEIDNITKEKEKEIME 184
>gi|357008012|ref|ZP_09073011.1| ribosome recycling factor [Paenibacillus elgii B69]
Length = 184
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 103/171 (60%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI AL ++L LR GRA+P +LD + VE G P+N LA ++ DS+TL I P+D
Sbjct: 13 MEKAIAALKKDLASLRAGRATPALLDRVQVEYYGSMTPVNQLANINTPDSRTLMIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++ +E AI+ S LGL P DG + IPALT+E + K+ K E+ K +IR R
Sbjct: 73 SSVAAIEKAIMKSDLGLTPSNDGSAIRIVIPALTEERRSELVKMTRKYGEEAKVAIRNIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + + +D+ +R + +I + T K++ D + AKEKEI E
Sbjct: 133 RDANDDIKKLEKTGISEDESRRHQDDIQKFTDKHIAEVDKVLAAKEKEIME 183
>gi|337750015|ref|YP_004644177.1| Frr [Paenibacillus mucilaginosus KNP414]
gi|379722864|ref|YP_005314995.1| Frr [Paenibacillus mucilaginosus 3016]
gi|386725642|ref|YP_006191968.1| ribosome recycling factor [Paenibacillus mucilaginosus K02]
gi|336301204|gb|AEI44307.1| Frr [Paenibacillus mucilaginosus KNP414]
gi|378571536|gb|AFC31846.1| Frr [Paenibacillus mucilaginosus 3016]
gi|384092767|gb|AFH64203.1| ribosome recycling factor [Paenibacillus mucilaginosus K02]
Length = 184
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 103/171 (60%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI AL +EL LR GRA+P +LD I VE G P+N LA ++ DS+TL I P+D
Sbjct: 13 MEKAIGALKKELASLRAGRATPALLDRIQVEYYGAMTPVNQLANINTPDSRTLMIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ +E AI+ S LGL P DG + IPALT+E + K+ K E+ K +IR R
Sbjct: 73 GSVAAIEKAIMKSDLGLTPSNDGSSIRIVIPALTEERRADLVKMTKKAGEEAKVAIRNIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + + +D+ + ++EI ++T K++ D + AKEKEI E
Sbjct: 133 RDANDDIKKLEKNGISEDESRGHQEEIQKMTDKHIAEVDKVLAAKEKEIME 183
>gi|323456603|gb|EGB12470.1| hypothetical protein AURANDRAFT_58615 [Aureococcus anophagefferens]
Length = 171
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 99/168 (58%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I AL L LRTGRASP +L ++V+ G + PLN LA VSV L ++PYD
Sbjct: 1 MDKSIGALRNNLGTLRTGRASPDILARVVVDYYGAETPLNQLASVSVSSGTQLVVSPYDK 60
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L +E AIV + LG+ P DG+ + +PALT++ + + K ED K +IR R
Sbjct: 61 SSLGAVESAIVDANLGMAPNNDGELIRLNVPALTEDRRKEILKQAKAVGEDAKVAIRNIR 120
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A +KK G L +D K EI +LT K +KS D++ AKEKEI
Sbjct: 121 KGANSDVKKQGKDLSEDVAKDANNEIQKLTDKLIKSVDEVVAAKEKEI 168
>gi|415886602|ref|ZP_11548382.1| ribosome recycling factor [Bacillus methanolicus MGA3]
gi|387587289|gb|EIJ79612.1| ribosome recycling factor [Bacillus methanolicus MGA3]
Length = 185
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI A +RE+ +R GRAS +LD + V+ GV P+N LA +SV + + L I PYD
Sbjct: 13 MTKAIQAYTREIASIRAGRASASLLDRVTVDYYGVPTPVNQLAGISVPEPRLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI+ S LGLNP DG + AIP LT+E + + KVV K SE+ K +IR R
Sbjct: 73 SIVGEIEKAILKSDLGLNPTSDGSLIRIAIPQLTEERRKELVKVVKKESEEAKVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D ++ +I +LT +++ D I K KEKEI E
Sbjct: 133 RDANDDLKKLEKAGEITEDDLRGYSDDIQKLTDEHINKIDQITKDKEKEILE 184
>gi|199597107|ref|ZP_03210539.1| Ribosome recycling factor [Lactobacillus rhamnosus HN001]
gi|258508619|ref|YP_003171370.1| ribosome recycling factor [Lactobacillus rhamnosus GG]
gi|385828281|ref|YP_005866053.1| ribosome recycling factor [Lactobacillus rhamnosus GG]
gi|418070799|ref|ZP_12708074.1| ribosome recycling factor [Lactobacillus rhamnosus R0011]
gi|421768761|ref|ZP_16205471.1| Ribosome recycling factor [Lactobacillus rhamnosus LRHMDP2]
gi|421771087|ref|ZP_16207748.1| Ribosome recycling factor [Lactobacillus rhamnosus LRHMDP3]
gi|423078868|ref|ZP_17067545.1| ribosome recycling factor [Lactobacillus rhamnosus ATCC 21052]
gi|199591911|gb|EDY99985.1| Ribosome recycling factor [Lactobacillus rhamnosus HN001]
gi|257148546|emb|CAR87519.1| Ribosome-recycling factor [Lactobacillus rhamnosus GG]
gi|259649926|dbj|BAI42088.1| ribosome recycling factor [Lactobacillus rhamnosus GG]
gi|357540219|gb|EHJ24236.1| ribosome recycling factor [Lactobacillus rhamnosus R0011]
gi|357549156|gb|EHJ31004.1| ribosome recycling factor [Lactobacillus rhamnosus ATCC 21052]
gi|411185610|gb|EKS52737.1| Ribosome recycling factor [Lactobacillus rhamnosus LRHMDP2]
gi|411186522|gb|EKS53646.1| Ribosome recycling factor [Lactobacillus rhamnosus LRHMDP3]
Length = 185
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L REL +R GRA+ +L+ I V+ G PLN +A ++V +++ L I+PYD ++LK +
Sbjct: 19 SLQRELGNIRAGRANASLLNQITVDYYGAPTPLNQMAAITVPEARVLQISPYDKSSLKNI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI +S LG+NP DG + IP LT E + + K V K SE+ K ++R R++ LD
Sbjct: 79 ETAINASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKFSENAKIAVRNIRREGLDK 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K+ + +D++ RLEK++ + T K D+I AKEKEI E
Sbjct: 139 LKRQEKDGDITEDELHRLEKDMQKATDDATKRIDEIAAAKEKEITE 184
>gi|317129173|ref|YP_004095455.1| ribosome recycling factor [Bacillus cellulosilyticus DSM 2522]
gi|315474121|gb|ADU30724.1| ribosome recycling factor [Bacillus cellulosilyticus DSM 2522]
Length = 185
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 109/172 (63%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ A +EL +R GRA+P +LD + VE G+ PLN LA ++V +++ L+I P+D
Sbjct: 13 MSKSVEAFRKELATIRAGRANPSLLDKVQVEYYGMMTPLNQLASIAVPEARMLTIQPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L+++E AI + LGL+P DG + AIPALT+E + + K+V + SE+ K ++R R
Sbjct: 73 SSLQDIERAIQKADLGLSPTNDGNIIRIAIPALTEERRKELVKLVGRYSEEAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK L +D ++ + E+ +LT +K D+I K+KE+EI E
Sbjct: 133 RDANDELKKLEKDGELTEDDLRWNQDEVQKLTDGVIKDIDEIAKSKEQEIME 184
>gi|451344141|ref|ZP_21913203.1| ribosome recycling factor [Eggerthia catenaformis OT 569 = DSM
20559]
gi|449337141|gb|EMD16307.1| ribosome recycling factor [Eggerthia catenaformis OT 569 = DSM
20559]
Length = 181
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME I A EL +RTGRA+P MLD ++V+ G PLN ++ +SV++ + L + PYD
Sbjct: 14 MEKTIKAYKNELVNIRTGRANPSMLDRVMVDYYGSPTPLNQISGISVVEGRQLLVKPYDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++K++E A+ + LGL P+ DG + IP LT+E + + K V K +E+ K +IR R
Sbjct: 74 SSMKDIERAVYEADLGLTPQNDGAVIRINIPPLTEERRKELVKQVKKLAEEAKIAIRNQR 133
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+KA D+++K +D +K +K+I +LT K+++ DDI K KE ++
Sbjct: 134 RKANDLVEKGED---EDAVKEGKKDIQKLTDKFIQEIDDITKDKESDL 178
>gi|218781002|ref|YP_002432320.1| ribosome recycling factor [Desulfatibacillum alkenivorans AK-01]
gi|226703258|sp|B8FGE3.1|RRF_DESAA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|218762386|gb|ACL04852.1| ribosome recycling factor [Desulfatibacillum alkenivorans AK-01]
Length = 185
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 109/173 (63%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI AL + L ++RTGRAS MLD + ++ G P+N A V++ +S+ ++I P+D
Sbjct: 13 MDKAIAALEKGLLRVRTGRASLSMLDGVKLDYYGTPTPINQAATVAIPESRLITIQPWDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++E AI+ S LGLNP DG+ + AIP LT++ + M K+V K SE+ K S+R R
Sbjct: 73 SVIKDIEKAILKSDLGLNPSNDGKIIRIAIPPLTEDRRKEMVKLVNKMSEEGKISVRNIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + MKK G + +D + + E+ ++T +VK DDIC KEKEI E
Sbjct: 133 RDANETIKSMKKDG-DIAEDLAFKGQDEVQKITDDFVKKVDDICAQKEKEILE 184
>gi|317495174|ref|ZP_07953544.1| ribosome recycling protein [Gemella morbillorum M424]
gi|316914596|gb|EFV36072.1| ribosome recycling protein [Gemella morbillorum M424]
Length = 185
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI +L REL +R G+AS +LD + V+ GV P+N +A VSV + K L I+PY+
Sbjct: 13 MEKAIASLRRELASIRAGKASAAVLDRLTVDYYGVATPINQVAGVSVPEPKMLVISPYEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L ++E AI +S LGLNP DG + PALT+E + + K+V K SE K ++R R
Sbjct: 73 TLLGDIERAIQASDLGLNPSNDGSVIRIVFPALTEERRKELAKLVGKESEGAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D MKK S + +D +K +I ++T K+V D + K K+ E+
Sbjct: 133 RDAIDAMKKLEKASQITEDDLKGYSDDIQKVTDKFVAEIDKVTKEKQDEL 182
>gi|294102175|ref|YP_003554033.1| ribosome recycling factor [Aminobacterium colombiense DSM 12261]
gi|293617155|gb|ADE57309.1| ribosome recycling factor [Aminobacterium colombiense DSM 12261]
Length = 186
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 108/173 (62%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME I L E +RTGRA PG+++ I V+ G + P+ LA VSV +++ + I P+D
Sbjct: 13 MEKVIEHLKEEFISIRTGRAHPGLVNDIRVDYYGSQTPIKQLATVSVPEARQILIAPFDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ LK +E AI +S LG+NP+ DG+ + +P LTKE + KVV+K +E+ + ++R R
Sbjct: 73 SILKGIEKAIQASSLGINPQNDGENIRLTLPELTKERRIELSKVVSKYAEEARIAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
++ D +KK S + +D+ ++ K++ ++T ++K D++ K KEKEI EG
Sbjct: 133 REVNDTLKKMEKDSVISEDEQRKYTKDVQDITDDFIKKIDEVLKVKEKEIIEG 185
>gi|407775123|ref|ZP_11122419.1| ribosome recycling factor [Thalassospira profundimaris WP0211]
gi|407282071|gb|EKF07631.1| ribosome recycling factor [Thalassospira profundimaris WP0211]
Length = 187
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L +E T LRTGRAS +L+ ++VE GV PLN +A VSV +S+ LS+ +D
Sbjct: 15 MEGAVEVLHKEFTGLRTGRASVSLLEPVMVEAYGVPTPLNQVASVSVPESRMLSVQVWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AI S LGLNP DG + IPAL +E + KV K +E K S+R R
Sbjct: 75 SMVKAVEKAIRDSGLGLNPAADGTLVRVPIPALNEERRTELSKVAGKYAEQAKISVRNVR 134
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KK + KD+M EKE+ +LT K + D+ KE+EI
Sbjct: 135 RDGMDQLKKWEKDGDISKDEMHDEEKEVQKLTDKVIGEIDEALAHKEQEI 184
>gi|384431047|ref|YP_005640407.1| Ribosome-recycling factor [Thermus thermophilus SG0.5JP17-16]
gi|333966515|gb|AEG33280.1| Ribosome-recycling factor [Thermus thermophilus SG0.5JP17-16]
Length = 185
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ L L LRTGRA+P +L H+ VE G +PLN +A V+ D++TL + +D
Sbjct: 14 MQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGTHVPLNQIATVTAPDARTLVVQSWDQ 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LK +E AI S LGLNP G L IP LT+E + + + V + +E+ + +IR R
Sbjct: 74 NALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIR 133
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ALD +KK L +D+ KR E EI ++T +++ AD + + KE+EI
Sbjct: 134 REALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQEI 183
>gi|410456942|ref|ZP_11310789.1| ribosome recycling factor [Bacillus bataviensis LMG 21833]
gi|409926916|gb|EKN64067.1| ribosome recycling factor [Bacillus bataviensis LMG 21833]
Length = 185
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI + SREL +R GRAS +LD I V+ G P+N +A ++ +++ + I PYD
Sbjct: 13 MTKAIQSYSRELASIRAGRASASLLDRITVDYYGAPTPVNQMAGITTPEARLIVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L ++E AI+ S LGLNP DGQ + AIP LT+E + + KVV K SE+ K ++R R
Sbjct: 73 SILGDIEKAILKSDLGLNPTNDGQIIRIAIPQLTEERRKELVKVVKKESEEAKVALRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + D +KK + +D ++ ++ +LT +Y++ D I K KEKEI E
Sbjct: 133 RDSNDSLKKLEKNGDITEDALRGFSDDVQKLTDEYIQKIDQITKEKEKEILE 184
>gi|164687908|ref|ZP_02211936.1| hypothetical protein CLOBAR_01553 [Clostridium bartlettii DSM
16795]
gi|164602321|gb|EDQ95786.1| ribosome recycling factor [Clostridium bartlettii DSM 16795]
Length = 184
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I AL E + +R GRA+ MLD I V+ G P+N + +SV + +TL INP+D
Sbjct: 12 MDKTIEALKYEFSTIRAGRANAQMLDKIRVDYYGTPTPINQIGSISVPEPRTLVINPWDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +KE+E AI++S LGLNP DG + +PALT+E + K K +E+ K IR R
Sbjct: 72 SAMKEIEKAIMNSDLGLNPTNDGDVIRLNVPALTEERRIELTKKAKKAAEEFKVRIRNER 131
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK + +D++KR ++++ +LT KY+K D + KEK+I
Sbjct: 132 RDANDKLKKMQKDGEITEDELKRGQEDVQKLTDKYIKEIDSLLAVKEKDI 181
>gi|212704264|ref|ZP_03312392.1| hypothetical protein DESPIG_02319 [Desulfovibrio piger ATCC 29098]
gi|212672344|gb|EEB32827.1| ribosome recycling factor [Desulfovibrio piger ATCC 29098]
Length = 186
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ AL R+ KLRTGRA+ ++D I + G P++ +A V+V DS+T++I P+D
Sbjct: 14 MEKAMAALERDFQKLRTGRATTALVDGIKADYYGTPTPISQMASVAVPDSRTITIQPWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+ S LGL P DG+ + IP LT+E + + KV K +ED K ++R R
Sbjct: 74 GGISVVEKAILKSDLGLTPVNDGRIIRINIPPLTEERRKELVKVARKYTEDAKVAVRNVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK ++ +D+ K+ E E+ +LT K+V AD +AKEKEI
Sbjct: 134 RDANDSLKKLEKEKAITEDEQKKAEAEVQKLTDKFVADADKRSQAKEKEI 183
>gi|219669723|ref|YP_002460158.1| ribosome recycling factor [Desulfitobacterium hafniense DCB-2]
gi|254809508|sp|B8FRG2.1|RRF_DESHD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|219539983|gb|ACL21722.1| ribosome recycling factor [Desulfitobacterium hafniense DCB-2]
Length = 185
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ AL RE +R GRA+P MLD I VE G + P+N LA +SV + + L+I P+D
Sbjct: 13 MVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLTIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L +E AI+ S LGLNP DG + IP LT E + K V K +ED + ++R R
Sbjct: 73 SSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSRVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + D +KK + +D++KR + ++ ++T K+VK D I KEKEI E
Sbjct: 133 RDSNDELKKLEKDHTASEDEVKRAQDDVQKMTDKFVKEIDRIMGTKEKEIME 184
>gi|241890096|ref|ZP_04777394.1| ribosome recycling factor [Gemella haemolysans ATCC 10379]
gi|241863718|gb|EER68102.1| ribosome recycling factor [Gemella haemolysans ATCC 10379]
Length = 185
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI +L REL +R G+AS +LD + V+ GV P+N +A VSV + K L I+PY+
Sbjct: 13 MEKAIASLRRELASIRAGKASAAVLDRLTVDYYGVPTPINQVAGVSVPEPKMLVISPYEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L ++E AI +S LGLNP DG + PALT+E + + K+V K SE K ++R R
Sbjct: 73 TLLGDIEKAIQASDLGLNPANDGTVIRIVFPALTEERRKELAKLVGKESEGAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D MKK S + +D +K +I ++T K+V D + K K++E+
Sbjct: 133 RDAMDAMKKLEKSSQITEDDLKGYSDDIQKVTDKFVAEIDKVTKEKQEEL 182
>gi|386360622|ref|YP_006058867.1| ribosome recycling factor [Thermus thermophilus JL-18]
gi|383509649|gb|AFH39081.1| ribosome recycling factor [Thermus thermophilus JL-18]
Length = 185
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ L L LRTGRA+P +L H+ VE G +PLN +A V+ D++TL + +D
Sbjct: 14 MQKSLDVLEHNLAGLRTGRANPALLLHLKVEYYGTHVPLNQIATVTAPDARTLVVQSWDQ 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LK +E AI S LGLNP G L IP LT+E + + + V + +E+ + +IR R
Sbjct: 74 NALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIR 133
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ALD +KK L +D+ KR E EI ++T +++ AD + + KE+EI
Sbjct: 134 REALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQEI 183
>gi|291557942|emb|CBL35059.1| ribosome recycling factor [Eubacterium siraeum V10Sc8a]
Length = 184
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M + A+ E +R GRA+P +LD + V+ GV +N +A V+V +++ L I P+D
Sbjct: 12 MGKCVAAVETEYASIRAGRANPAVLDKVTVDYYGVPTQINAMAAVAVSEARVLVITPWDA 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TLK +E AI++S +G+ P DG+ + P LT+E + +CK V K +E+ K ++R R
Sbjct: 72 STLKSIEKAILASDIGITPTNDGKAIRITFPQLTEERRKELCKQVKKIAEEGKVAVRNVR 131
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A++ K K S + +D +K EK++ +LT KY D C AKEKEI
Sbjct: 132 RDAMEKFKAMKKNSEITEDDLKNCEKDVQKLTDKYCDEMDAACSAKEKEI 181
>gi|374296772|ref|YP_005046963.1| ribosome recycling factor [Clostridium clariflavum DSM 19732]
gi|359826266|gb|AEV69039.1| ribosome recycling factor [Clostridium clariflavum DSM 19732]
Length = 185
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I L EL +R GRA+P +LD I V+ GV P+N LA +SV +++ + I P++
Sbjct: 13 MQKTIKVLRDELAGVRAGRANPAILDKITVDYYGVPTPINQLASISVPEARVIMIQPWEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +KE+E I S +G+NP DG+ + P LT+E + + KVV K ED K +IR R
Sbjct: 73 SMVKEIEKEIQKSDIGINPNSDGKVIRLVFPMLTEERRKELTKVVKKYGEDSKVAIRSIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D MK K L +D +K EK+I +T KY+ D I + KE EI E
Sbjct: 133 RDAIDQMKALKKEGQLTEDDLKTAEKDIQNMTDKYISEIDKIVELKEAEILE 184
>gi|170760155|ref|YP_001787743.1| ribosome recycling factor [Clostridium botulinum A3 str. Loch
Maree]
gi|238688518|sp|B1KWM1.1|RRF_CLOBM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|169407144|gb|ACA55555.1| ribosome recycling factor [Clostridium botulinum A3 str. Loch
Maree]
Length = 184
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 101/169 (59%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +IVAL REL ++ GRA+P MLD I E G PLN LA +SV +++ L I P+D
Sbjct: 13 MGKSIVALKRELASMKAGRANPAMLDRIDAEYYGSMTPLNQLANISVPEARVLLIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++ +E AI+ S LGLNP DG + IP LT+E + + K V KT E+ K +IR R
Sbjct: 73 SSMGAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEETKVAIRSIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +K + +D +K+ E +I + T KY+K D I AKEKEI
Sbjct: 133 RDCNDDVKNLKKDDVSEDDIKKTEDDIQKKTDKYIKEIDSIISAKEKEI 181
>gi|402817520|ref|ZP_10867108.1| ribosome-recycling factor Frr [Paenibacillus alvei DSM 29]
gi|402505042|gb|EJW15569.1| ribosome-recycling factor Frr [Paenibacillus alvei DSM 29]
Length = 184
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 102/171 (59%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI AL REL LR GRA+P +LD + VE G P+N LA +S D +TL I P+D
Sbjct: 13 MEKAIAALKRELATLRAGRATPALLDRVQVEYYGAMTPVNQLANISTPDPRTLMIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L ++E AI+ S LGL P DG + +IP LT+E + K K E+ K +IR R
Sbjct: 73 SSLADIERAILKSDLGLTPANDGSLIRLSIPPLTEERRAELVKHTKKFGEEAKVAIRNIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + + +D+ +R +++I + T K++ D + KEKEI E
Sbjct: 133 RDANDDIKKLEKTDISEDESRRHQEDIQKTTDKFIAEVDKVLVVKEKEIME 183
>gi|406982722|gb|EKE04005.1| hypothetical protein ACD_20C00120G0006 [uncultured bacterium]
Length = 186
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I RE + +RTGRA+P +LD I + G PL ++ +SV D +TL I PYD
Sbjct: 14 MQKTIAETKREFSGIRTGRANPMILDKINADYYGTPTPLRQISNISVQDGQTLVIQPYDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI+ S LG+NP DGQ + P LT++ + + K V K ED K +IR R
Sbjct: 74 SAISAIEKAILKSDLGVNPNNDGQNVRITFPPLTEDRRKDLVKQVKKIGEDNKVAIRNIR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +KK SLP+D++K+ +++I ++T KY + D + KEKE+
Sbjct: 134 RDMTDSLKKLEKSESLPEDEVKKHQEQIQKMTDKYTREIDTVVAEKEKEV 183
>gi|443325927|ref|ZP_21054599.1| ribosome recycling factor [Xenococcus sp. PCC 7305]
gi|442794468|gb|ELS03883.1| ribosome recycling factor [Xenococcus sp. PCC 7305]
Length = 182
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME I A R +RTGRAS +LD ++V+ G + PL LA +SV DS T++I PYD
Sbjct: 10 MEKTIEATQRSFNTIRTGRASTSLLDRVMVDYYGSETPLQSLANISVPDSTTITIQPYDK 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI S +GL P DGQ++ IPALTK+ + + KV +K +E+ K ++R R
Sbjct: 70 GSMAQIERAISMSDIGLTPNNDGQKIRLIIPALTKDRRKELVKVASKLAEEGKVALRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K S + +D+ + ++ +I ++T +Y K D + KEK+I
Sbjct: 130 RDAVDAVRKQEKSSEISEDESRDMQDQIQKVTDEYTKKIDALLAVKEKDI 179
>gi|385678485|ref|ZP_10052413.1| ribosome recycling factor [Amycolatopsis sp. ATCC 39116]
Length = 185
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L+ +RTGRA+PGM I+VE G MPLN +A V++ +++ + + PYD
Sbjct: 13 MEKAVSFAKEDLSSVRTGRANPGMFARIMVEAYGSTMPLNQVAGVNIPEARMVIVKPYDQ 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI S LG+NP DGQ + IP LT+E + M K+V ED K IR R
Sbjct: 73 GQLGAIEKAIRESDLGVNPSNDGQIIRITIPQLTEERRKEMVKMVKAKGEDAKVHIRGVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K+ LD + K G + +D++ R EKE+ LT YV D++ K KE E+ E
Sbjct: 133 RKSKEELDRIAKDGEA-GEDEVARAEKELQHLTDNYVAKVDELVKHKEAELLE 184
>gi|220903796|ref|YP_002479108.1| ribosome recycling factor [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868095|gb|ACL48430.1| ribosome recycling factor [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 186
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ AL R+ KLRTGRA+ ++D I + G P++ +A ++V DS+TL+I P+D
Sbjct: 14 MEKALAALDRDFAKLRTGRATTALVDGIKADYYGTPTPISQMASIAVPDSRTLTIQPWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+ S LGL P DG+ + +P LT+E + + KV K SE+ K ++R R
Sbjct: 74 GGIALIEKAILKSDLGLTPVNDGKLIRIVMPPLTEERRKELSKVARKYSEEGKVAVRNVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK ++ +D+ KR ++ +LT KYV D C AKEKEI E
Sbjct: 134 RDANDSLKKLEKEKTITEDEQKRATDDVQKLTDKYVAEVDKRCAAKEKEIME 185
>gi|319649531|ref|ZP_08003687.1| ribosome recycling factor [Bacillus sp. 2_A_57_CT2]
gi|317398693|gb|EFV79375.1| ribosome recycling factor [Bacillus sp. 2_A_57_CT2]
Length = 185
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI A +REL +R G+A+ +LD I V+ G P+N LA VS +++ L I PYD
Sbjct: 13 MTKAISAYTRELASIRAGKANASLLDRITVDYYGAPTPVNQLAGVSAPEARLLVITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L E+E AI+ S +GLNP DG + AIP LT+E + + KVV K SED K +IR R
Sbjct: 73 SILGEIEKAILKSDIGLNPSNDGSVIRLAIPQLTEERRKDLVKVVKKESEDAKVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK + +D ++ +I +LT ++ D++ K KEKEI
Sbjct: 133 RDANDDLKKLEKNGDITEDDLRGFSDDIQKLTDDHISKIDELTKEKEKEI 182
>gi|320335233|ref|YP_004171944.1| ribosome-recycling factor [Deinococcus maricopensis DSM 21211]
gi|319756522|gb|ADV68279.1| Ribosome-recycling factor [Deinococcus maricopensis DSM 21211]
Length = 180
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL ++ LRTGRA+PG+L I VE G MP++ +A ++ D++TL I P+D
Sbjct: 12 MTKAIEALENSMSVLRTGRANPGILKKIQVEYYGSTMPIDQVASITAPDARTLVIQPWDR 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI S LGLNP G + +IPALT+E + + K +E+ + +IR R
Sbjct: 72 GAINPIEKAIRDSDLGLNPNNKGDSIFISIPALTEERRKDLIKNAKGYAEEGRVAIRNVR 131
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ ALD +KK + D++KR E EI ++T +Y+K DD+ KE++I
Sbjct: 132 KSALDEIKKV-EGVGDDEIKRGEAEIQKITDEYIKKVDDVLDRKEQDI 178
>gi|313885301|ref|ZP_07819052.1| ribosome recycling factor [Eremococcus coleocola ACS-139-V-Col8]
gi|312619407|gb|EFR30845.1| ribosome recycling factor [Eremococcus coleocola ACS-139-V-Col8]
Length = 185
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ A SREL +R G A+ +LD I V GV PLN LA ++V +++ L + PYD
Sbjct: 13 MAKSVEAFSRELASIRAGVANASILDRIQVTYYGVPTPLNQLASITVPEARMLLVTPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ E+E AI+ S +G+NP DG + IPALTKE + + KVV K +E K SIR R
Sbjct: 73 SSTTEIEKAILQSDVGINPTSDGDVIRLVIPALTKERREELVKVVGKENETAKISIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D KK + L +D +K EK+I +T + VK D + KAKE EI
Sbjct: 133 RDQIDAAKKLEKNNELTEDDVKDYEKQIQAITDEKVKELDALAKAKEDEI 182
>gi|378548701|ref|ZP_09823917.1| hypothetical protein CCH26_01392 [Citricoccus sp. CH26A]
Length = 185
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME I A + +RTGRA+PG+ ++VE G PL LA + D++TL I+P+D
Sbjct: 13 MEKTIEATGEDFASVRTGRANPGLYSKVMVEYYGSFTPLQQLASFTTTDARTLLISPFDV 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E A+ S +G NP DG+ + +P LT+E + K+V +E+ K S+R SR
Sbjct: 73 SALRNIEKALSDSEIGANPSNDGKVIRVVMPELTEERRKEYVKLVKSKAEEHKVSLRNSR 132
Query: 121 QK---ALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K ALD M K G + +D+ R EKE+D LT+KY ++ +D+ K KE E+ E
Sbjct: 133 RKAKEALDRMVKDG-EIGEDEGSRAEKELDALTRKYTETIEDMAKRKEAELLE 184
>gi|354806910|ref|ZP_09040388.1| ribosome recycling factor [Lactobacillus curvatus CRL 705]
gi|354514550|gb|EHE86519.1| ribosome recycling factor [Lactobacillus curvatus CRL 705]
Length = 185
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 107/173 (61%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A +L R L ++R GRA+ +++ + VE G PLN +A ++V +++ L I PYD
Sbjct: 13 MEKAEASLQRTLGQIRAGRANASLVNRVNVEYYGAMTPLNQIAAITVPEARVLLITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+++E A+ ++ LG++P DG + IP LT E + + K V K +E K +IR +R
Sbjct: 73 GALEDIEKALYTADLGISPANDGSVIRLVIPQLTGERRKEIAKEVGKEAEIGKVAIRNAR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
+ A+D +KKA S + +D+M LE+++ +LT + K D+I K KEKEI EG
Sbjct: 133 RDAMDSLKKAEKASEISEDEMHDLEEQVQKLTNEATKKIDEIAKNKEKEITEG 185
>gi|210622737|ref|ZP_03293329.1| hypothetical protein CLOHIR_01277 [Clostridium hiranonis DSM 13275]
gi|210154069|gb|EEA85075.1| hypothetical protein CLOHIR_01277 [Clostridium hiranonis DSM 13275]
Length = 185
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+A I AL E +R GRA+ MLD + V+ G P+N +A +SV + +TL I P+D
Sbjct: 13 MDATIEALKFEFGTIRAGRANAAMLDKVRVDYYGTLTPINQMAAISVPEPRTLMITPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++ E+E AI +S +GL P DG + ++PALT+E + + K K SED K IR R
Sbjct: 73 SSMHEIEKAIANSDVGLTPSNDGSVIRLSVPALTEERRKELAKKAHKASEDFKVRIRNER 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D++K+ +E+ ++T KY+K D + KEK+I E
Sbjct: 133 RDANDKLKKIEKAGEITEDELKKATEEVQKITDKYIKEIDSLYAKKEKDIME 184
>gi|433463488|ref|ZP_20421041.1| ribosome recycling factor [Halobacillus sp. BAB-2008]
gi|432187488|gb|ELK44773.1| ribosome recycling factor [Halobacillus sp. BAB-2008]
Length = 185
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SR+L +R GRA+P +LD++ V+ G PLN LA VS + + L I PYD
Sbjct: 13 MEQAVQAFSRQLATVRAGRANPSILDNVYVDYYGAATPLNQLAQVSAPEPRLLVITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ E+E AI + LGL+P DG + IPALT+E + + KVV K SE+ K IR R
Sbjct: 73 TAIAEIEKAIQKADLGLSPSSDGNVVRINIPALTEERRKDLAKVVGKYSEESKVQIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + D +KK L +D ++ ++++ ++T +++ D++ K KE+EI E
Sbjct: 133 RDSNDKLKKLEKDGELTEDDLRSYQEDVQKVTDQHIVKIDELAKTKEEEIME 184
>gi|227488622|ref|ZP_03918938.1| ribosome recycling factor [Corynebacterium glucuronolyticum ATCC
51867]
gi|227543226|ref|ZP_03973275.1| ribosome recycling factor [Corynebacterium glucuronolyticum ATCC
51866]
gi|227091516|gb|EEI26828.1| ribosome recycling factor [Corynebacterium glucuronolyticum ATCC
51867]
gi|227181035|gb|EEI62007.1| ribosome recycling factor [Corynebacterium glucuronolyticum ATCC
51866]
Length = 185
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEA + EL+ +RTGRA+P M + +I E G P+N +A +SV + + L I PYD
Sbjct: 13 MEATVDHTREELSHIRTGRANPSMFNGVIAEFYGQPTPINQMATISVPEPRMLLIKPYDM 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N++ ++E AI +S LG+NP DGQ L +P LT+E + M KV E+ K +IR R
Sbjct: 73 NSMDDIERAIRNSDLGVNPTNDGQVLRVTVPQLTEERRREMVKVAKSKGEEGKIAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K +D +KK +D+++ EKE+D++TKK +++ +AKEK++ E
Sbjct: 133 RKGMDQLKKIQKDGDAGEDEVQAGEKELDKVTKKNETRVEELVEAKEKDLME 184
>gi|152976190|ref|YP_001375707.1| ribosome recycling factor [Bacillus cytotoxicus NVH 391-98]
gi|189044044|sp|A7GRF4.1|RRF_BACCN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|152024942|gb|ABS22712.1| ribosome recycling factor [Bacillus cytotoxicus NVH 391-98]
Length = 185
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRAS +LD + V+ G P+ LA ++V +++ L I PYD
Sbjct: 13 MEKAVAAYSRELATVRAGRASASILDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI+ + LGLNP DG + A PALT+E + + KVV K +ED K +IR R
Sbjct: 73 TSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRRELVKVVKKYAEDAKVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D ++ ++I + T KY+ D+I K KE+EI E
Sbjct: 133 RDGNDELKKLEKAGEMTEDDLRGYTEDIQKETDKYIAKVDEIAKNKEQEIME 184
>gi|46198814|ref|YP_004481.1| ribosome recycling factor [Thermus thermophilus HB27]
gi|55980827|ref|YP_144124.1| ribosome recycling factor [Thermus thermophilus HB8]
gi|6831652|sp|Q9WX76.1|RRF_THET8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|60390719|sp|Q72KE0.1|RRF_THET2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|11513707|pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus
gi|157836509|pdb|2V46|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 1 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 1.
gi|157836565|pdb|2V48|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 3 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 2.
gi|158429965|pdb|2QBE|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
First 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
gi|158430018|pdb|2QBG|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
gi|158430071|pdb|2QBI|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The First 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
gi|158430124|pdb|2QBK|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The Second 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
gi|158431424|pdb|2Z4L|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The First 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
gi|158431477|pdb|2Z4N|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The Second 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
gi|385251648|pdb|3J0D|J Chain J, Models For The T. Thermophilus Ribosome Recycling Factor
Bound To The E. Coli Post-Termination Complex
gi|385251656|pdb|3J0E|G Chain G, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
gi|4589668|dbj|BAA76865.1| frr [Thermus thermophilus]
gi|46196437|gb|AAS80854.1| ribosome recycling factor (rrf) [Thermus thermophilus HB27]
gi|55772240|dbj|BAD70681.1| ribosome recycling factor (Rrf) [Thermus thermophilus HB8]
Length = 185
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ L L LRTGRA+P +L H+ VE G +PLN +A V+ D +TL + +D
Sbjct: 14 MQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQ 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LK +E AI S LGLNP G L IP LT+E + + + V + +E+ + +IR R
Sbjct: 74 NALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIR 133
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ALD +KK L +D+ KR E EI ++T +++ AD + + KE+EI
Sbjct: 134 REALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQEI 183
>gi|390559874|ref|ZP_10244153.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Nitrolancetus hollandicus Lb]
gi|390173552|emb|CCF83453.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Nitrolancetus hollandicus Lb]
Length = 185
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ L R+L +RTGRAS G++D + ++ G MPLN LA +S ++ L + P+D
Sbjct: 13 MNKSLDTLRRDLGGIRTGRASTGLIDRLDIDYYGTVMPLNQLANISAPEAHLLVVQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E A+ +S LGLNP DGQ + AIP LT+E +++ K+V T ED + +IR R
Sbjct: 73 SATSAIEKALRTSELGLNPSSDGQVIRIAIPPLTEERRKSLVKLVRHTVEDNRVAIRNIR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ AL +K+ + +D+ +R E ++DELTK+YV A+ I K KE E+ E
Sbjct: 133 RDALAQIKEMLHEKMIGEDEERRAEHQVDELTKRYVSEAEKIGKHKEGEVLE 184
>gi|320450765|ref|YP_004202861.1| ribosome recycling factor [Thermus scotoductus SA-01]
gi|320150934|gb|ADW22312.1| ribosome recycling factor [Thermus scotoductus SA-01]
Length = 185
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ AL L LRTGRA+P +L H+ VE G +PLN +A V+ D+KTL + +D
Sbjct: 14 MQKSLEALEHNLAGLRTGRANPALLLHLKVEYYGTHVPLNQIATVTAPDAKTLVVQSWDQ 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LK +E AI S LGLNP G L IP LT+E + + K +E+ + +IR R
Sbjct: 74 NALKAIEKAIRDSDLGLNPANKGDALYINIPPLTEERRKELVKTARHYAEEGRIAIRNIR 133
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++AL+ +KK L +D KR E EI ++T +++ AD++ + KE+EI
Sbjct: 134 REALEKLKKLSKELHLSEDDTKRAEAEIQKITDEFIAKADELLEKKEQEI 183
>gi|258511403|ref|YP_003184837.1| ribosome recycling factor [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478129|gb|ACV58448.1| ribosome recycling factor [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 187
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 106/173 (61%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L RE +R GRA+P MLDH++VE G +MP+N +A V+ + + L I+P+D
Sbjct: 15 MDKAIQNLRREFATVRAGRAAPSMLDHVMVEYYGAQMPVNQVASVTSPEPRLLVISPWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
+ L E+E AI S LGLNP DG + IPALT++ Q + K V K +E+ + ++IR
Sbjct: 75 SMLSEIEKAIQKSDLGLNPANDGNVIRLTIPALTEQRRQELVKQVRKMAEEARVAIRNIR 134
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
R + + ++KAG L +D ++RL + +LT K + D + + KEK++ +
Sbjct: 135 RDGNEEIKKLEKAG-DLSEDDVRRLMDRVQQLTDKAIAQVDRLLEDKEKDVTQ 186
>gi|23099044|ref|NP_692510.1| ribosome recycling factor [Oceanobacillus iheyensis HTE831]
gi|33301568|sp|Q8EQV0.1|RRF_OCEIH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|22777272|dbj|BAC13545.1| ribosome recycling factor [Oceanobacillus iheyensis HTE831]
Length = 185
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 98/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ ALS+ L +R GRA+P +LD + V+ G PLN LA V +++ L+I PYD
Sbjct: 13 MEQAVQALSKNLASVRAGRANPSILDSVFVDYYGASTPLNQLASVGAPEARLLTITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI + LGL+P DG + IPALT+E + + KVV K SE+ K IR R
Sbjct: 73 SAIGDIEKAIQKADLGLSPSSDGNIIRINIPALTQERRKDLVKVVGKYSEEAKVQIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK L +D ++ + ++ T Y+ D + K KE EI E
Sbjct: 133 RDTNDQLKKMEKNGDLTEDDLRGFQDDVQTSTNDYINKIDQLAKNKENEIME 184
>gi|384135103|ref|YP_005517817.1| ribosome recycling factor [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339289188|gb|AEJ43298.1| ribosome recycling factor [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 185
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 106/173 (61%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L RE +R GRA+P MLDH++VE G +MP+N +A V+ + + L I+P+D
Sbjct: 13 MDKAIQNLRREFATVRAGRAAPSMLDHVMVEYYGAQMPVNQVASVTSPEPRLLVISPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
+ L E+E AI S LGLNP DG + IPALT++ Q + K V K +E+ + ++IR
Sbjct: 73 SMLSEIEKAIQKSDLGLNPANDGNVIRLTIPALTEQRRQELVKQVRKMAEEARVAIRNIR 132
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
R + + ++KAG L +D ++RL + +LT K + D + + KEK++ +
Sbjct: 133 RDGNEEIKKLEKAG-DLSEDDVRRLMDRVQQLTDKAIAQVDRLLEDKEKDVTQ 184
>gi|197119126|ref|YP_002139553.1| ribosome recycling factor [Geobacter bemidjiensis Bem]
gi|226749930|sp|B5EHV8.1|RRF_GEOBB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|197088486|gb|ACH39757.1| ribosome recycling factor [Geobacter bemidjiensis Bem]
Length = 185
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 110/172 (63%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I +L +E K+RTGRAS +LD I V++ G PLN +A +++ +++T++I+P+D
Sbjct: 13 MDKSIESLRKEYQKVRTGRASTSLLDDIKVDSYGTLSPLNQVATLAIPEARTITISPWDS 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI++S LGLNP DG+ + +P LT+E + + K + + +ED K ++R R
Sbjct: 73 KMIAPIEKAIMNSNLGLNPANDGKMIRLTLPPLTEERRKDIVKQLKRDAEDAKVALRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D +KK S+ +D+ KR EKE+ + T +V D++ KEKE+ E
Sbjct: 133 RDAIDQLKKLEKDKSISEDEQKRAEKEVQDFTNSHVAKVDEVLLHKEKEVME 184
>gi|134299822|ref|YP_001113318.1| ribosome recycling factor [Desulfotomaculum reducens MI-1]
gi|172044307|sp|A4J5Z0.1|RRF_DESRM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|134052522|gb|ABO50493.1| ribosome recycling factor [Desulfotomaculum reducens MI-1]
Length = 184
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 103/169 (60%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ + RE LR GRA+P +LD + V G PLN LA +SV +++ L I P+D
Sbjct: 13 MKKSVDVVRREFASLRAGRATPSILDKVTVSYYGTPTPLNQLANISVPEARVLVIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI+ S +G+ P DG + IP LT+E + KV+ K +E+ + ++R R
Sbjct: 73 SVIPEVEKAILKSDVGITPSSDGTVIRLIIPQLTQERRTELVKVIKKKAEEGRVAVRNIR 132
Query: 121 QKALDMMK-KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +K K +P+D+ KR + E+ +LT KYVK D++ KAKE+EI
Sbjct: 133 RDTNDSIKAKQKDGIPEDEAKRGQDELQKLTDKYVKEIDEMVKAKEQEI 181
>gi|424780653|ref|ZP_18207526.1| Ribosome recycling factor [Catellicoccus marimammalium M35/04/3]
gi|422843055|gb|EKU27502.1| Ribosome recycling factor [Catellicoccus marimammalium M35/04/3]
Length = 185
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME + AL REL+++R GRA+ +LD + VE GV P+N +A +S+ +++ + I P+D
Sbjct: 13 MEKSEQALRRELSQIRAGRANASLLDRVQVEYYGVPTPVNQMAQISIPEARVIMITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
TLK++E I+ S LG+NP DG + IP LT+E + + K V K +E K SIR R
Sbjct: 73 TTLKDIERGILESDLGINPTNDGNVIRLVIPQLTEERRKELAKEVKKIAEQGKVSIRHIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ ++ +KK S + +D ++ EK++ ELT K +K D I KE+E+ E
Sbjct: 133 RDVMNALKKMEKASEITEDDLRGYEKDVQELTDKSIKDMDAIAAEKEQELLE 184
>gi|117928746|ref|YP_873297.1| ribosome recycling factor [Acidothermus cellulolyticus 11B]
gi|166230403|sp|A0LV51.1|RRF_ACIC1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|117649209|gb|ABK53311.1| ribosome recycling factor [Acidothermus cellulolyticus 11B]
Length = 185
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A +RTGRA+P + I VE G PLN LA +V D++ + I+PYD
Sbjct: 13 MEKATNVARENFAAIRTGRANPALFSKITVEYYGTPTPLNQLASFTVADARLIVIHPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
+L+ +E AI S LG+NP DG + AIP LT+E + K+ +E+ + ++IR
Sbjct: 73 GSLRAIEKAIRDSDLGVNPTDDGSVIRVAIPPLTEERRRDYIKMARHEAEEARVAIRNIR 132
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
R + ALD ++K G + +D ++R EKE+DELT KYV D++ K KE E+ E
Sbjct: 133 RHAKDALDKLQKDG-EVGEDDVRRAEKELDELTHKYVAHIDEMLKHKEAELLE 184
>gi|167750047|ref|ZP_02422174.1| hypothetical protein EUBSIR_01015 [Eubacterium siraeum DSM 15702]
gi|167657068|gb|EDS01198.1| ribosome recycling factor [Eubacterium siraeum DSM 15702]
gi|291530445|emb|CBK96030.1| ribosome recycling factor [Eubacterium siraeum 70/3]
Length = 184
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M + A+ E +R GRA+P +LD + V+ GV +N +A V+V +++ L I P+D
Sbjct: 12 MGKCVAAVETEYASIRAGRANPAVLDKVTVDYYGVPTQINAMAAVAVSEARVLVITPWDA 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TLK +E AI++S +G+ P DG+ + P LT+E + +CK V K +E+ K ++R R
Sbjct: 72 STLKSIEKAILASDIGITPTNDGKAIRITFPQLTEERRKELCKQVKKIAEEGKVAVRNVR 131
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A++ K K + + +D +K EK++ +LT KY D C AKEKEI
Sbjct: 132 RDAMEKFKAMKKNNEITEDDLKNCEKDVQKLTDKYCDEMDAACSAKEKEI 181
>gi|434400388|ref|YP_007134392.1| ribosome recycling factor [Stanieria cyanosphaera PCC 7437]
gi|428271485|gb|AFZ37426.1| ribosome recycling factor [Stanieria cyanosphaera PCC 7437]
Length = 182
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 101/171 (59%), Gaps = 2/171 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + A R +RTGRA+ +LD ++VE G + PL LA +S D+ T+ I PYD
Sbjct: 10 MQKTVEATQRSFNTIRTGRANASLLDRVVVEYYGTETPLKSLANISTPDATTIVIQPYDK 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI S LGL P DGQ + IP LT E Q + K+ K +E+ K IR R
Sbjct: 70 GSMAQIEKAITMSDLGLTPNNDGQVIRLNIPPLTSERRQELVKMAGKLAEEGKVGIRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
+ A+D ++K S + +D+ + L+ +I ++T +Y K DD+ AKE++I+
Sbjct: 130 RDAIDAVRKQEKNSEISEDEARDLQDQIQKVTDEYTKKIDDLLSAKEQDIS 180
>gi|312868288|ref|ZP_07728488.1| ribosome recycling factor [Streptococcus parasanguinis F0405]
gi|337282426|ref|YP_004621897.1| ribosome recycling factor [Streptococcus parasanguinis ATCC 15912]
gi|387880001|ref|YP_006310304.1| ribosome recycling factor [Streptococcus parasanguinis FW213]
gi|414155983|ref|ZP_11412292.1| ribosome-recycling factor [Streptococcus sp. F0442]
gi|417918268|ref|ZP_12561820.1| ribosome recycling factor [Streptococcus parasanguinis SK236]
gi|419800992|ref|ZP_14326241.1| ribosome recycling factor [Streptococcus parasanguinis F0449]
gi|311096033|gb|EFQ54277.1| ribosome recycling factor [Streptococcus parasanguinis F0405]
gi|335370019|gb|AEH55969.1| ribosome recycling factor [Streptococcus parasanguinis ATCC 15912]
gi|342828723|gb|EGU63089.1| ribosome recycling factor [Streptococcus parasanguinis SK236]
gi|385693069|gb|EIG23726.1| ribosome recycling factor [Streptococcus parasanguinis F0449]
gi|386793451|gb|AFJ26486.1| ribosome recycling factor [Streptococcus parasanguinis FW213]
gi|410872192|gb|EKS20136.1| ribosome-recycling factor [Streptococcus sp. F0442]
Length = 185
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L RE +R GRA+ +LD I VE GV+ PLN LA +++ +++ L I P+D ++LK++
Sbjct: 19 SLGREFGSIRAGRANASLLDRIFVEYYGVETPLNQLASITIPEARVLLITPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E +I +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 EHSINASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEKEI ++T VK D++ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKGLEKEIQKVTDDAVKHVDEMTAHKEKELME 184
>gi|383828500|ref|ZP_09983589.1| ribosome recycling factor [Saccharomonospora xinjiangensis XJ-54]
gi|383461153|gb|EID53243.1| ribosome recycling factor [Saccharomonospora xinjiangensis XJ-54]
Length = 185
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ EL +RTGRA+P M I+VE G PLN LA V++ +++ + PYD
Sbjct: 13 MEKAVSFAKEELAAVRTGRATPAMFSRIVVEYYGSPTPLNQLASVNIPEARMAVVKPYDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI S LG+NP DG + IP LT+E + M KV ED + SIR R
Sbjct: 73 TQLAAIEKAIRDSDLGVNPTNDGNIIRVVIPQLTEERRKEMVKVAKSKGEDARISIRGVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D++ R EKE+ LT +YV D++ K KE E+ E
Sbjct: 133 RKAKEELDRIGKDGEA-GEDEVARAEKELQNLTDRYVHQVDELVKHKEAELLE 184
>gi|302525191|ref|ZP_07277533.1| ribosome recycling factor [Streptomyces sp. AA4]
gi|302434086|gb|EFL05902.1| ribosome recycling factor [Streptomyces sp. AA4]
Length = 185
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +LT +RTGRA P M I+VE G PLN LA V+V +++ I PYD
Sbjct: 13 MEKAVSVAKEDLTSVRTGRAHPSMFSRIVVEYYGAPTPLNQLASVNVPEARMALIKPYDQ 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI S LG+NP DG + IP LT+E + M KV ED + SIR R
Sbjct: 73 TQLNAIEKAIRESDLGVNPSNDGNVIRIVIPQLTEERRKEMVKVAKGKGEDARVSIRSIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D++ R EKE+ LT YV D++ K KE E+ E
Sbjct: 133 RKAKEELDRIAKDGEA-GEDEVARAEKELQNLTDTYVHQVDELVKHKEAELLE 184
>gi|329769638|ref|ZP_08261042.1| ribosome-recycling factor [Gemella sanguinis M325]
gi|328838393|gb|EGF88002.1| ribosome-recycling factor [Gemella sanguinis M325]
Length = 185
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI L REL +R G+AS +LD + V+ GV P+N +A +SV + K L I+PY+
Sbjct: 13 MEKAIANLRRELASIRAGKASASVLDRLTVDYYGVATPINQVAGISVPEPKMLVISPYEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L ++E AI +S LGLNP DG + PALT+E + + K+V K SE K ++R R
Sbjct: 73 TLLGDIEKAIQASDLGLNPANDGTVIRIVFPALTEERRKELAKLVGKESEGAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D MKK S + +D +K +I + T KYV D + K K+ E+
Sbjct: 133 RDAMDSMKKLEKASQITEDDLKGYSDDIQKATDKYVAEIDKVTKEKQDEL 182
>gi|39997016|ref|NP_952967.1| ribosome recycling factor [Geobacter sulfurreducens PCA]
gi|409912445|ref|YP_006890910.1| ribosome recycling factor [Geobacter sulfurreducens KN400]
gi|47116992|sp|P61304.1|RRF_GEOSL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|39983904|gb|AAR35294.1| ribosome recycling factor [Geobacter sulfurreducens PCA]
gi|298506033|gb|ADI84756.1| ribosome recycling factor [Geobacter sulfurreducens KN400]
Length = 185
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 108/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ +L RE K+RTGRA+ G+LD I V+ G PLN +A ++V + +T++I P++
Sbjct: 13 MEKSVESLRREYQKVRTGRANTGLLDEIRVDFYGNPSPLNQVATLAVPEPRTITIQPWET 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+++ LG P DG+ + ++P LT+E + + K + KT+ED K +IR R
Sbjct: 73 KMIPVIEKAILNANLGFTPSNDGKLIRISLPPLTEERRKEIVKSLKKTAEDAKIAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D +KK + +D +KR EKE+ ++T YV D++ KEKE+ E
Sbjct: 133 RDAIDGLKKLEKDKKISEDDLKRAEKEVQDVTNVYVAKVDEVLAHKEKEVME 184
>gi|46579283|ref|YP_010091.1| ribosome recycling factor [Desulfovibrio vulgaris str.
Hildenborough]
gi|387152667|ref|YP_005701603.1| ribosome recycling factor [Desulfovibrio vulgaris RCH1]
gi|60390259|sp|Q72DQ9.1|RRF_DESVH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|46448697|gb|AAS95350.1| ribosome recycling factor [Desulfovibrio vulgaris str.
Hildenborough]
gi|311233111|gb|ADP85965.1| ribosome recycling factor [Desulfovibrio vulgaris RCH1]
Length = 186
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI AL RE ++LRTGRAS ++D I V+ G P++ +A V+V DS+ ++I P+D
Sbjct: 14 MEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAVPDSRCITIQPWDR 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N +E AI+ S LGLNP DG+ + IP LT+E + + K+ K +E+ K ++R R
Sbjct: 74 NAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARKYAEEAKVAVRNVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A + +KK L +D +++ ++++ +LT ++V D+ AKEKEI
Sbjct: 134 RDANEQLKKLEKNKELSEDDLRKAQEDVQKLTDRFVAKTDEKAGAKEKEI 183
>gi|89895289|ref|YP_518776.1| ribosome recycling factor [Desulfitobacterium hafniense Y51]
gi|423073374|ref|ZP_17062115.1| ribosome recycling factor [Desulfitobacterium hafniense DP7]
gi|122482357|sp|Q24UG0.1|RRF_DESHY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|89334737|dbj|BAE84332.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|361855825|gb|EHL07778.1| ribosome recycling factor [Desulfitobacterium hafniense DP7]
Length = 185
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ AL RE +R GRA+P MLD I VE G + P+N LA +SV + + L+I P+D
Sbjct: 13 MVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLTIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L +E AI+ S LGLNP DG + IP LT E + K V K +ED + ++R R
Sbjct: 73 SSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSRVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + D +KK + +D++KR + ++ ++T K+VK + I KEKEI E
Sbjct: 133 RDSNDELKKLEKDHTASEDEVKRAQDDVQKMTDKFVKEIERIMGTKEKEIME 184
>gi|357636520|ref|ZP_09134395.1| ribosome recycling factor [Streptococcus macacae NCTC 11558]
gi|357584974|gb|EHJ52177.1| ribosome recycling factor [Streptococcus macacae NCTC 11558]
Length = 185
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 102/164 (62%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L RE +R GRA+ +LD I VE GV PLN LA +SV +++ L I+P+D ++LK++
Sbjct: 19 SLGREFASIRAGRANAALLDRIEVEYYGVLTPLNQLASISVPEARVLLISPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALD- 125
E AI +S LG+NP DG + IPALT+E + + K V K E K +IR R+ A+D
Sbjct: 79 EHAINASDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGESAKVAIRNIRRDAMDE 138
Query: 126 -MMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + +D++K LEK+I ++T + VK DD+ KEKE+
Sbjct: 139 AKKAEKAKEMTEDELKSLEKDIQKITDEAVKHIDDMTTNKEKEL 182
>gi|310659006|ref|YP_003936727.1| ribosome recycling factor [[Clostridium] sticklandii]
gi|308825784|emb|CBH21822.1| ribosome recycling factor [[Clostridium] sticklandii]
Length = 185
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME I L EL +R GRA+P MLD ++V+ G PL +A VS + +T+ I P+D
Sbjct: 13 MEKTIAVLKDELLTIRAGRANPNMLDRVMVDYYGTMTPLKQMAGVSSPEPRTILIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI+SS LG NP DG + IP LT+E + + K+VAKT E K +IR R
Sbjct: 73 SAMGSIEKAILSSDLGFNPTNDGNSIRINIPQLTEERRKDLIKLVAKTGEQAKVAIRNER 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A + +KK S L +D K+ + E+ +LT ++K DD+ KEK+I E
Sbjct: 133 REANEAIKKMEKTSELTEDDSKKAQDEVQKLTDSHIKMIDDMLAKKEKDIME 184
>gi|320547289|ref|ZP_08041581.1| ribosome recycling factor [Streptococcus equinus ATCC 9812]
gi|320448093|gb|EFW88844.1| ribosome recycling factor [Streptococcus equinus ATCC 9812]
Length = 185
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
E + +L+RE +R GRA+ +LD I VE G PLN LA ++V +++ L I+P+D
Sbjct: 13 FEQSHSSLAREFASIRAGRANASLLDRIQVEYYGAMTPLNQLASITVPEARVLLISPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK++E AI +S LG+NP DG + IPALT+E +A+ K V K E+ K +IR R
Sbjct: 73 SSLKDIEHAINASDLGINPANDGSVIRLVIPALTEETRKALAKDVKKVGENAKVAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D KK + +D++K LEK+I + T + VK D + KEKE+ E
Sbjct: 133 RDAMDEAKKQEKAKEITEDELKVLEKDIQKATDEAVKHIDTMTANKEKELLE 184
>gi|428779229|ref|YP_007171015.1| ribosome recycling factor [Dactylococcopsis salina PCC 8305]
gi|428693508|gb|AFZ49658.1| ribosome recycling factor [Dactylococcopsis salina PCC 8305]
Length = 182
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 107/171 (62%), Gaps = 2/171 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI A + LRTGRA+ +LD ++VE G++ PL LA +S D+ T++I PYD
Sbjct: 10 MKKAIDATQQSFNSLRTGRANASVLDRVMVEYYGMETPLKSLANISTPDATTITIQPYDK 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+L+++E AI S +GL P DG+ + IP LT + Q + K+ K +E+ + SIR R
Sbjct: 70 GSLQQIEKAISMSDIGLTPNNDGEMVRLNIPPLTSDRRQELVKIAGKYAEEGRVSIRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
+ A++ ++KA L +D+ + ++ +I +LT KYV D+I KAKE++I+
Sbjct: 130 RDAIEEVRKAEKKHELSEDEARDIQDKIQKLTDKYVAKVDEILKAKEEDIS 180
>gi|429247619|ref|ZP_19210859.1| ribosome recycling factor [Clostridium botulinum CFSAN001628]
gi|428755364|gb|EKX77995.1| ribosome recycling factor [Clostridium botulinum CFSAN001628]
Length = 172
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M IVAL REL ++ GRA+P MLD I E G PLN L +SV +++ L I P+D
Sbjct: 1 MGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDK 60
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LGLNP DG + IP LT+E + + K V KT E+ K +IR R
Sbjct: 61 SALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIR 120
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +K + +D +K+ E +I + T KY+K D I AKEKEI
Sbjct: 121 RDCNDDVKNLKKDDVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEI 169
>gi|384246873|gb|EIE20361.1| ribosome recycling factor [Coccomyxa subellipsoidea C-169]
Length = 174
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 97/169 (57%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ + +RTGRA+PGMLD I VE G PL LA +S ++ L I PYD
Sbjct: 4 MEKSLESTKGSFATVRTGRATPGMLDRIQVEYYGAMTPLKQLATLSAPEASQLVIQPYDK 63
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ +E AI++S LGL P DG + +P LT + + M K+V+K ED K ++R R
Sbjct: 64 TSIPSIEKAIMTSDLGLTPGNDGNLIRINVPQLTADRRKEMAKLVSKLGEDGKVALRNIR 123
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
+ A+ + K G + +D+ K LE I E+T YVK D I K+K+ E+
Sbjct: 124 RDAIKTIDKRGKDISEDEKKALEDSIQEMTDDYVKQIDAIVKSKQTELT 172
>gi|375094092|ref|ZP_09740357.1| ribosome recycling factor [Saccharomonospora marina XMU15]
gi|374654825|gb|EHR49658.1| ribosome recycling factor [Saccharomonospora marina XMU15]
Length = 185
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L+ +RTGRA+P M I+VE G PLN LA +++ +++ + PYD
Sbjct: 13 MEKAVSVAKDDLSSVRTGRATPAMFSRIVVEYYGAPTPLNQLASINIPEARMAVVKPYDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI S LG+NP DG + IP LT+E + M KV ED + SIR R
Sbjct: 73 SQLNAIEKAIRDSDLGVNPTNDGTIIRVVIPQLTEERRREMVKVAKSKGEDARISIRSVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D + R EKE+ LT KYV D++ K KE E+ E
Sbjct: 133 RKAKEELDRIGKDGEA-GEDDVARAEKELQNLTDKYVHQVDELVKHKETELLE 184
>gi|313886710|ref|ZP_07820420.1| ribosome recycling factor [Porphyromonas asaccharolytica
PR426713P-I]
gi|332300074|ref|YP_004441995.1| Ribosome-recycling factor [Porphyromonas asaccharolytica DSM 20707]
gi|312923872|gb|EFR34671.1| ribosome recycling factor [Porphyromonas asaccharolytica
PR426713P-I]
gi|332177137|gb|AEE12827.1| Ribosome-recycling factor [Porphyromonas asaccharolytica DSM 20707]
Length = 186
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ L +L ++R G+A+P +LD I VE G MPLN +A V+V D++TL+I P+D
Sbjct: 14 MLKAVEFLQDKLDRIRAGKANPVLLDDITVEAYGAPMPLNQVATVTVPDARTLAITPWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+K++E I+ S LG+ P +G+ + A+P LT+E + + K SE+ K SIR +R
Sbjct: 74 KLIKDIEKGILDSNLGITPTNNGEMIRIAMPPLTEERRKELVKQCKAESEEAKISIRNAR 133
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D KKA LP+D +K+ E + +L KY+ ++ AKEKEI
Sbjct: 134 RDAIDAAKKAVKAEDLPEDTIKQTENDAQKLHDKYIGRVEEALAAKEKEI 183
>gi|168184638|ref|ZP_02619302.1| ribosome recycling factor [Clostridium botulinum Bf]
gi|170756757|ref|YP_001781975.1| ribosome recycling factor [Clostridium botulinum B1 str. Okra]
gi|226949785|ref|YP_002804876.1| ribosome recycling factor [Clostridium botulinum A2 str. Kyoto]
gi|237795867|ref|YP_002863419.1| ribosome recycling factor [Clostridium botulinum Ba4 str. 657]
gi|387818654|ref|YP_005679001.1| ribosome recycling factor [Clostridium botulinum H04402 065]
gi|229564223|sp|B1II63.1|RRF_CLOBK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809503|sp|C1FSK2.1|RRF_CLOBJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|259494535|sp|C3L0C9.1|RRF_CLOB6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|169121969|gb|ACA45805.1| ribosome recycling factor [Clostridium botulinum B1 str. Okra]
gi|182672259|gb|EDT84220.1| ribosome recycling factor [Clostridium botulinum Bf]
gi|226841674|gb|ACO84340.1| ribosome recycling factor [Clostridium botulinum A2 str. Kyoto]
gi|229263177|gb|ACQ54210.1| ribosome recycling factor [Clostridium botulinum Ba4 str. 657]
gi|322806698|emb|CBZ04267.1| ribosome recycling factor [Clostridium botulinum H04402 065]
Length = 184
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M IVAL REL ++ GRA+P MLD I E G PLN L +SV +++ L I P+D
Sbjct: 13 MGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LGLNP DG + IP LT+E + + K V KT E+ K +IR R
Sbjct: 73 SALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +K + +D +K+ E +I + T KY+K D I AKEKEI
Sbjct: 133 RDCNDDVKNLKKDDVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEI 181
>gi|120603155|ref|YP_967555.1| ribosome recycling factor [Desulfovibrio vulgaris DP4]
gi|166230784|sp|A1VFB2.1|RRF_DESVV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|120563384|gb|ABM29128.1| ribosome recycling factor [Desulfovibrio vulgaris DP4]
Length = 186
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI AL RE ++LRTGRAS ++D I V+ G P++ +A V+V DS+ ++I P+D
Sbjct: 14 MEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAVPDSRCITIQPWDR 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N +E AI+ S LGLNP DG+ + IP LT+E + + K+ K +E+ K ++R R
Sbjct: 74 NAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARKYAEEAKVAVRNVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A + +KK L +D +++ ++++ +LT ++V D+ AKEKEI
Sbjct: 134 RDANEQLKKLEKNKELSEDDLRKAQEDVQKLTDRFVAKTDEKAGAKEKEI 183
>gi|357235149|ref|ZP_09122492.1| ribosome recycling factor [Streptococcus criceti HS-6]
gi|356883131|gb|EHI73331.1| ribosome recycling factor [Streptococcus criceti HS-6]
Length = 185
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 101/164 (61%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE + +R GRA+ +LD I VE G PLN LA ++V +++ L I+P+D N++K++
Sbjct: 19 SLAREFSAIRAGRANASLLDRIEVEYYGAPTPLNQLASITVPEARVLLISPFDKNSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI S LG+NP DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERAINESDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KK + +D++K LEK+I + T VK D + KEKE+
Sbjct: 139 AKKQEKAKEITEDELKSLEKDIQKATDDAVKKVDSMTNEKEKEL 182
>gi|255656125|ref|ZP_05401534.1| ribosome recycling factor [Clostridium difficile QCD-23m63]
gi|296450443|ref|ZP_06892199.1| ribosome recycling factor [Clostridium difficile NAP08]
gi|296879434|ref|ZP_06903428.1| ribosome recycling factor [Clostridium difficile NAP07]
gi|296260704|gb|EFH07543.1| ribosome recycling factor [Clostridium difficile NAP08]
gi|296429580|gb|EFH15433.1| ribosome recycling factor [Clostridium difficile NAP07]
Length = 185
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I AL E +R GRA+ MLD I V+ G P+N + +SV + + L I+P+D
Sbjct: 13 MNGTIDALKFEFGTIRAGRANAQMLDKIRVDYYGTPTPINQIGAISVPEPRILMISPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI +S LGLNP DG+ + ++PALT+E + + K +K +ED K IR R
Sbjct: 73 SAMHEIEKAIANSDLGLNPSNDGEVIRLSVPALTEERRKELAKKASKAAEDFKVRIRNER 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + +KK G L +D++K+ + E+ ++T K++K D + KEK+I E
Sbjct: 133 RDANEKIKKMEKGGELTEDELKKAQDEVQKMTDKFIKEIDTLLSKKEKDIME 184
>gi|427392490|ref|ZP_18886495.1| ribosome recycling factor [Alloiococcus otitis ATCC 51267]
gi|425731451|gb|EKU94269.1| ribosome recycling factor [Alloiococcus otitis ATCC 51267]
Length = 185
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI +L+ +L +R GRA+ +++ + V G PLN LA +SV +++ L I+PYD
Sbjct: 13 MTKAIDSLNYQLGGIRAGRANASLVERVQVNYYGAPTPLNQLAQISVPEARVLLISPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TLK++E AI S +G+ P DG+ + +PALT+E + + K V + E K SIR R
Sbjct: 73 STLKDIETAIQKSDIGIPPASDGEVIRLVVPALTEERRKEIAKKVGEEEEKAKVSIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ +D +KK+ S + +D+ KR E ++ +LT KY AD + + KE+EI
Sbjct: 133 REGMDSLKKSEKNSEISEDEKKRYEDQVQKLTDKYTDQADQLSRQKEREI 182
>gi|334564459|ref|ZP_08517450.1| ribosome recycling factor [Corynebacterium bovis DSM 20582]
Length = 185
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 11 ELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAI 70
EL +RTGRA+P M + +I E GV P+ +A +SV + + L I PY+ + + E+E AI
Sbjct: 23 ELMTIRTGRANPAMFNGVIAEYYGVPTPITQMATISVPEPRMLIIKPYEQSAMGEIENAI 82
Query: 71 VSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK- 129
+S LG+NP DGQ L +P LT+E + + KV ED K +IR R+K +D + K
Sbjct: 83 RNSDLGVNPTNDGQVLRVTVPQLTEERRRDLVKVAKSKGEDAKIAIRNIRRKGMDTLGKI 142
Query: 130 -AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+D++K EKE+D++T+ YV D + +AKEKE+ E
Sbjct: 143 QKDGDAGEDEVKAAEKELDKITQTYVGQVDRLVEAKEKELLE 184
>gi|229086377|ref|ZP_04218553.1| Ribosome-recycling factor [Bacillus cereus Rock3-44]
gi|228696893|gb|EEL49702.1| Ribosome-recycling factor [Bacillus cereus Rock3-44]
Length = 185
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRAS LD + V+ G P+ LA ++V +++ L I PYD
Sbjct: 13 MEKAVAAYSRELASVRAGRASASALDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI+ + LGLNP DG + A PALT+E + + K V K +E+ K ++R R
Sbjct: 73 TSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRKDLVKTVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK S + +D ++ ++I + T KY+ D+I K KEKEI E
Sbjct: 133 RDANDDLKKLEKASEITEDDLRGYAEDIQKETDKYIAKVDEIAKNKEKEIME 184
>gi|303325662|ref|ZP_07356105.1| ribosome recycling factor [Desulfovibrio sp. 3_1_syn3]
gi|345892231|ref|ZP_08843054.1| ribosome-recycling factor [Desulfovibrio sp. 6_1_46AFAA]
gi|302863578|gb|EFL86509.1| ribosome recycling factor [Desulfovibrio sp. 3_1_syn3]
gi|345047370|gb|EGW51235.1| ribosome-recycling factor [Desulfovibrio sp. 6_1_46AFAA]
Length = 186
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ AL R+ KLRTGRAS ++D I + G P++ +A V+V DS+TL+I P+D
Sbjct: 14 MEKALAALDRDFAKLRTGRASTALVDGIKADYYGTPTPVSQMASVAVPDSRTLTIQPWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+ S LGL P DG+ + IP LT+E + + KV K SE+ K ++R R
Sbjct: 74 GGIAAVEKAILKSDLGLTPVNDGKIIRIVIPPLTEERRKDLVKVARKYSEEAKVAVRNVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK + +D++K+ ++ +LT K+V D C KEKEI
Sbjct: 134 RDANDGLKKLEKDKEITEDELKKAVDDVQKLTDKFVGDVDKKCAGKEKEI 183
>gi|218288327|ref|ZP_03492626.1| ribosome recycling factor [Alicyclobacillus acidocaldarius LAA1]
gi|218241686|gb|EED08859.1| ribosome recycling factor [Alicyclobacillus acidocaldarius LAA1]
Length = 187
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 106/173 (61%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L RE +R GRA+P MLDH++VE G +MP+N +A V+ + + L I+P+D
Sbjct: 15 MDKAIQNLRREFATVRAGRAAPSMLDHVMVEYYGAQMPVNQVASVTSPEPRLLVISPWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
+ L E+E AI S LGLNP DG + IPALT++ Q + K V K +E+ + ++IR
Sbjct: 75 SMLSEIEKAIQKSDLGLNPANDGNVIRLTIPALTEQRRQELVKQVRKMAEEARVAIRNIR 134
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
R + + ++KAG + +D ++RL + +LT K + D + + KEK++ +
Sbjct: 135 RDGNEEIKKLEKAG-DISEDDVRRLMDRVQQLTDKAIAQVDRLLEDKEKDVTQ 186
>gi|168180688|ref|ZP_02615352.1| ribosome recycling factor [Clostridium botulinum NCTC 2916]
gi|421833908|ref|ZP_16269076.1| ribosome recycling factor [Clostridium botulinum CFSAN001627]
gi|182668443|gb|EDT80422.1| ribosome recycling factor [Clostridium botulinum NCTC 2916]
gi|409744788|gb|EKN43232.1| ribosome recycling factor [Clostridium botulinum CFSAN001627]
Length = 184
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 97/169 (57%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M IVAL REL ++ GRA+P MLD I E G PLN L +SV +++ L I P+D
Sbjct: 13 MGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI+ S LGLNP DG + IP LT+E + + K V KT E+ K +IR R
Sbjct: 73 GALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +K + +D +K+ E +I + T KY+K D I AKEKEI
Sbjct: 133 RDCNDDVKNLKKDDVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEI 181
>gi|414155224|ref|ZP_11411539.1| Ribosome-recycling factor [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
gi|411453274|emb|CCO09443.1| Ribosome-recycling factor [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
Length = 184
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 105/169 (62%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + + +E LR GRA+P +LD + V G PLN LA +SV +++ L I P+D
Sbjct: 13 MKKTVEVVRKEFASLRAGRATPALLDKVTVSYYGTPTPLNQLANISVPEARMLVIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI+ S LG+ P DG + IP LT+E + KVV K +E+ + ++R R
Sbjct: 73 SVIPEIERAILKSDLGITPTSDGTVVRLVIPQLTQERRTELVKVVKKKAEEGRVAVRNIR 132
Query: 121 QKALDMMK-KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D++K K +P+D++KR ++++ ++T KY+K D++ K+KE+EI
Sbjct: 133 RDVNDVLKVKQKEGVPEDEVKRGQEDLQKITDKYIKEIDEMVKSKEQEI 181
>gi|452850714|ref|YP_007492398.1| Ribosome-recycling factor [Desulfovibrio piezophilus]
gi|451894368|emb|CCH47247.1| Ribosome-recycling factor [Desulfovibrio piezophilus]
Length = 184
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ AL ++ KLRTGRA+ ++D+I+V+ G P++ LA VS+ DSKT+SI P+D
Sbjct: 12 MTGALTALDKDFGKLRTGRATTSLVDNIVVDYYGTPTPISQLASVSIPDSKTVSIQPWDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+E AI++S LGL P DG+ + IP LT+E + + K+ K +E+ K +IR R
Sbjct: 72 GAFGAVEKAIMNSDLGLTPVNDGKIIRIGIPPLTEERRKDLVKIAKKYTEECKIAIRNVR 131
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +K + + +D+ K+ E ++ +LT YVK +D AKEKEI E
Sbjct: 132 RDLNDSLKAMEKEKDISEDEKKKGEADVQKLTDDYVKESDQAFVAKEKEILE 183
>gi|381210017|ref|ZP_09917088.1| ribosome recycling factor [Lentibacillus sp. Grbi]
Length = 185
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A S+ L +R GRA+P +LD +IV+ G PLN LA +S +++ L I P+D
Sbjct: 13 MEQAVQAFSKNLATIRAGRANPAILDSVIVDYYGAATPLNQLATISAPEARLLVITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++ +E AI + LGL+P DG + IPALT+E + + KVV K +E+ + +R R
Sbjct: 73 SSVSNIEKAIQKADLGLSPSSDGNVIRINIPALTEERRKDLVKVVGKYAEEARVQVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++A D +KK L +D +K+ ++ + + T K + D+ K KEKEI
Sbjct: 133 REANDQLKKLEKNGDLTEDDLKKQQENVQKETDKQINKIDEYVKNKEKEI 182
>gi|57234843|ref|YP_181120.1| ribosome recycling factor [Dehalococcoides ethenogenes 195]
gi|123618956|sp|Q3Z9H9.1|RRF_DEHE1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|57225291|gb|AAW40348.1| ribosome recycling factor [Dehalococcoides ethenogenes 195]
Length = 185
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A++ LS+EL+ +RTGR+SP +++HI VE GV P+NHLA ++ D + ++I P+D
Sbjct: 13 MAASLDVLSQELSGIRTGRSSPALVEHIKVEYAGVPTPINHLASIAAPDPRYITIQPWDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LGL P DG + IP L++E Q M K+V+K E+ K ++R R
Sbjct: 73 SCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVSKRLEEDKIAMRNVR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D MKK S + +D +KR ++ ++T ++ AD + KE E+ +
Sbjct: 133 RDAMDEMKKLEKSKEISQDDLKRGSDQLQKITDSFIAKADKLGADKETELKQ 184
>gi|357039336|ref|ZP_09101130.1| Ribosome-recycling factor [Desulfotomaculum gibsoniae DSM 7213]
gi|355358235|gb|EHG06003.1| Ribosome-recycling factor [Desulfotomaculum gibsoniae DSM 7213]
Length = 183
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + +++E LR GRA+P +LD I+V G P+N LA ++ +++ L I P+D
Sbjct: 11 MKKTVEVVNKEFASLRAGRATPALLDKIMVTYYGTPTPINQLANITTPEARLLVIQPWDK 70
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ E+E AI+ S LG+ P DG + A+P LTKE + KV+ K +E+ + ++R R
Sbjct: 71 TAMPEIEKAILKSDLGITPASDGNIIRLAVPQLTKERRAELVKVIKKKAEEGRVAVRNLR 130
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K + + +D+++RL+ E+ +LT KY+K D + AKEKEI
Sbjct: 131 RDANDGLKSQQKNGDISEDELRRLQDEVQKLTDKYIKEIDALFAAKEKEI 180
>gi|119963211|ref|YP_947274.1| ribosome recycling factor [Arthrobacter aurescens TC1]
gi|403526487|ref|YP_006661374.1| ribosome-recycling factor Frr [Arthrobacter sp. Rue61a]
gi|171704626|sp|A1R4W2.1|RRF_ARTAT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|119950070|gb|ABM08981.1| ribosome recycling factor [Arthrobacter aurescens TC1]
gi|403228914|gb|AFR28336.1| ribosome-recycling factor Frr [Arthrobacter sp. Rue61a]
Length = 185
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ + +RTGRA+P + + +IVE G PL LA V D++T+ I PYD
Sbjct: 13 MDKAVEVAKDDFASIRTGRANPALYNKVIVEYYGTPTPLQQLASFGVPDARTILITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+++E A+ S +G NP DG + IP LTKE + K+V ED K SIR R
Sbjct: 73 TALRDIEKALSDSEVGANPSNDGNVIRVTIPELTKERRKEYVKIVKGKGEDAKVSIRSIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D+ R EKE+D LTK++V S D++ K KE E+ E
Sbjct: 133 RKAKDSLDKLVKDGEA-GEDEGARAEKELDALTKQHVDSIDELLKRKEAELLE 184
>gi|322392100|ref|ZP_08065562.1| ribosome recycling factor [Streptococcus peroris ATCC 700780]
gi|321145000|gb|EFX40399.1| ribosome recycling factor [Streptococcus peroris ATCC 700780]
Length = 185
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRITVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEKEI + T VK DD+ KEKEI E
Sbjct: 139 AKKQEKAKEITEDELKTLEKEIQKATDDAVKHIDDMTANKEKEILE 184
>gi|228470918|ref|ZP_04055763.1| ribosome recycling factor [Porphyromonas uenonis 60-3]
gi|228307315|gb|EEK16329.1| ribosome recycling factor [Porphyromonas uenonis 60-3]
Length = 186
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI L +L ++R G+A+P +LD I VE G MPLN +A V+V D++TL+I P+D
Sbjct: 14 MLKAIEFLQDKLDRIRAGKANPVLLDDITVEAYGAPMPLNQVATVTVPDARTLAITPWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+K++E I+ S LG+ P +G+ + +P LT+E + + K SE+ K SIR +R
Sbjct: 74 KLIKDIEKGILDSSLGITPTNNGEMIRITMPPLTEERRKELVKQSKAESEEAKISIRNAR 133
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D KKA LP+D +K+ E + +L KY+ ++ AKEKEI
Sbjct: 134 RDAIDAAKKAVKAEDLPEDTIKQTENDAQKLHDKYIARVEEALAAKEKEI 183
>gi|365157169|ref|ZP_09353450.1| ribosome-recycling factor [Bacillus smithii 7_3_47FAA]
gi|363625903|gb|EHL76914.1| ribosome-recycling factor [Bacillus smithii 7_3_47FAA]
Length = 185
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI ALSREL +R GRA+ +LD ++V+ G P+N LA +SV +++ L I PYD
Sbjct: 13 MSKAIQALSRELATIRAGRANASLLDKVVVDYYGAPTPVNQLASISVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI+ S LGL P DG + IP LT+E + + K+V K +E+ K ++R R
Sbjct: 73 SVVGEVEKAILKSDLGLTPTSDGSVIRITIPPLTEERRKELVKLVRKEAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + +KK + +D ++ +++ ++T ++VK DD+ K KEKEI E
Sbjct: 133 RDANEDLKKLEKNGEITEDDLRGYTEDVQKITDEHVKKIDDMAKKKEKEIME 184
>gi|389580738|ref|ZP_10170765.1| ribosome recycling factor [Desulfobacter postgatei 2ac9]
gi|389402373|gb|EIM64595.1| ribosome recycling factor [Desulfobacter postgatei 2ac9]
Length = 185
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
A EL K+RTGRAS MLD++ V+ G + PL +A VSV +S+ L++ P+D + + E+
Sbjct: 19 AFETELGKVRTGRASQSMLDNVRVDYYGTQTPLPQMATVSVPESRLLTVKPWDASVINEV 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI+ + LGL P DG+ + +IP LT+E + + K VAKT ED K ++R R+ + +M
Sbjct: 79 EKAILKANLGLTPSNDGKLIRISIPPLTEERRKEIVKSVAKTCEDFKVAVRNIRRDSNEM 138
Query: 127 MK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K + + +D+ + +K++ + T +K DDI AKEKEI E
Sbjct: 139 LKDLQKEGDISEDESFKAQKQVQDFTDASIKKLDDIFAAKEKEILE 184
>gi|163795639|ref|ZP_02189605.1| Ribosome recycling factor [alpha proteobacterium BAL199]
gi|159179238|gb|EDP63771.1| Ribosome recycling factor [alpha proteobacterium BAL199]
Length = 185
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+VAL E + LRTGRAS +L+ I VE G +MPLN +A +SV + + +S+ +D
Sbjct: 13 MDGAVVALRAEFSGLRTGRASASLLEPIHVEAYGSRMPLNQVATISVPEPRMISVQVWDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
K +E AI S LGLNP+ DGQ + +P L++E + KV +K +E + ++R R
Sbjct: 73 AMSKAVEKAIRESDLGLNPQSDGQLIRVPLPDLSEERRTELVKVASKYAESARVAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA + +D+ + E EI E T K+VK+ D+ +KEK+I
Sbjct: 133 RDGMDHLKKAEKDGDVSQDERRLYEDEIQEQTDKHVKAIDEALASKEKDI 182
>gi|153940196|ref|YP_001391730.1| ribosome recycling factor [Clostridium botulinum F str. Langeland]
gi|384462739|ref|YP_005675334.1| ribosome recycling factor [Clostridium botulinum F str. 230613]
gi|166230780|sp|A7GG20.1|RRF_CLOBL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|152936092|gb|ABS41590.1| ribosome recycling factor [Clostridium botulinum F str. Langeland]
gi|295319756|gb|ADG00134.1| ribosome recycling factor [Clostridium botulinum F str. 230613]
Length = 184
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M IVAL REL ++ GRA+P MLD I E G PLN L +S+ +++ L I P+D
Sbjct: 13 MGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISIPEARVLLIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LGLNP DG + IP LT+E + + K V KT E+ K +IR R
Sbjct: 73 SALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +K + +D +K+ E +I + T KY+K D I AKEKEI
Sbjct: 133 RDCNDDVKNLKKDDVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEI 181
>gi|345019859|ref|ZP_08783472.1| ribosome recycling factor [Ornithinibacillus scapharcae TW25]
Length = 185
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I A +R L +R GRA+P +LD + VE G PLN LA + +++ L I PYD
Sbjct: 13 MQQTIQAFTRNLATVRAGRANPSLLDSVFVEYYGANTPLNQLASIGAPEARLLVITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI + LGL+P DG + IP LT+E + + KVV K +E+ + +R R
Sbjct: 73 TAMGDIEKAIQKADLGLSPSNDGNVIRLNIPPLTEERRKDLVKVVGKYAEEFRVQVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KKA L +D+++ + ++ ++T KY+ D + K KEKEI E
Sbjct: 133 RDTNDALKKAEKNGELTEDELRNAQDDVQKVTDKYIAEIDQLAKDKEKEIME 184
>gi|332653365|ref|ZP_08419110.1| ribosome recycling factor [Ruminococcaceae bacterium D16]
gi|332518511|gb|EGJ48114.1| ribosome recycling factor [Ruminococcaceae bacterium D16]
Length = 184
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 99/159 (62%), Gaps = 2/159 (1%)
Query: 12 LTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIV 71
+R GRA+ G+LD I+VE G PLN +A +S D +TL++ P+D + LK +E AI
Sbjct: 23 FASVRAGRANAGVLDRIMVEYYGTPTPLNQVAAISSPDPRTLTVQPWDASLLKAIEKAIQ 82
Query: 72 SSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMM--KK 129
+S LG+NP+ DG+ + A P LT+E + + K V K SE+ K ++R R+ A+D KK
Sbjct: 83 TSDLGINPQNDGRLIRLAFPQLTEERRKELTKQVRKYSEEGKVALRNIRRDAMDEFKKKK 142
Query: 130 AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
S + +D +K LEKE+ +LT K K D++ KE+E+
Sbjct: 143 KASEITEDDLKELEKELQDLTDKRCKDIDELTVKKEQEL 181
>gi|419861073|ref|ZP_14383713.1| ribosome recycling factor [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387982757|gb|EIK56258.1| ribosome recycling factor [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 185
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 11 ELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAI 70
EL +RTGRA+P M + +I + GV P+ +A +SV +++ L I PY+ + + E+E AI
Sbjct: 23 ELVNIRTGRANPAMFNGVIADYYGVPTPITQMATISVPEARMLLIKPYEMSMMNEIENAI 82
Query: 71 VSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK- 129
+S LG+NP DGQ L IP LT+E + M K+ ED K +IR R+K +D +KK
Sbjct: 83 RNSDLGVNPTNDGQVLRVTIPQLTEERRRDMAKLAKSKGEDGKIAIRNVRRKGMDQLKKI 142
Query: 130 -AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+D+++ EKE+D++T KYV D++ KE E+ E
Sbjct: 143 QKDGDAGEDEVQAAEKELDKVTAKYVAQVDEVVAKKEAELME 184
>gi|116495065|ref|YP_806799.1| ribosome recycling factor [Lactobacillus casei ATCC 334]
gi|191638568|ref|YP_001987734.1| ribosome recycling factor [Lactobacillus casei BL23]
gi|227534923|ref|ZP_03964972.1| ribosome recycling factor [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|385820280|ref|YP_005856667.1| Ribosome recycling factor, RRF [Lactobacillus casei LC2W]
gi|385823477|ref|YP_005859819.1| Ribosome recycling factor, RRF [Lactobacillus casei BD-II]
gi|418005293|ref|ZP_12645288.1| ribosome recycling factor [Lactobacillus casei UW1]
gi|122263518|sp|Q038L5.1|RRF_LACC3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|238693049|sp|B3WES5.1|RRF_LACCB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|116105215|gb|ABJ70357.1| ribosome recycling factor [Lactobacillus casei ATCC 334]
gi|190712870|emb|CAQ66876.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Lactobacillus casei BL23]
gi|227187679|gb|EEI67746.1| ribosome recycling factor [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|327382607|gb|AEA54083.1| Ribosome recycling factor, RRF [Lactobacillus casei LC2W]
gi|327385804|gb|AEA57278.1| Ribosome recycling factor, RRF [Lactobacillus casei BD-II]
gi|410547222|gb|EKQ21459.1| ribosome recycling factor [Lactobacillus casei UW1]
Length = 185
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L REL +R GRA+ +L+ I VE G PLN +A +++ + + L ++PYD ++LK +
Sbjct: 19 SLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIPEPRVLQVSPYDKSSLKNI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+NP DG + IP LT E + + K V K SE K +IR R++ LD
Sbjct: 79 ETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKYSESAKIAIRNIRREGLDK 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K+ + +D + RLEK++ + T K D+I AKEKEI E
Sbjct: 139 LKRQEKDGDITEDDLHRLEKDMQKATDDATKRIDEIAAAKEKEITE 184
>gi|145343357|ref|XP_001416314.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576539|gb|ABO94607.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 176
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 108/171 (63%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME + A++ + + +RTGRA+ +LD I V+ G PL +A S D++T++I P+D
Sbjct: 4 MEKTMDAIANDFSTVRTGRANAAVLDRIEVDYYGAPTPLKTIANASTPDAQTITIQPFDK 63
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
+ +K++E AI S LG+NP DG + +P LT E + + K+V+K ED K +++R
Sbjct: 64 SAIKDIERAINESDLGMNPSNDGNIIRLNVPPLTAERRKELAKLVSKLGEDGKVALRNVR 123
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
R KA + ++KAG S +D++ +L+K +++LT YVK D++ KAKE E+
Sbjct: 124 RDAMKAYEKLEKAG-SFGEDEIAKLKKSMEDLTASYVKKVDELTKAKETEL 173
>gi|38234084|ref|NP_939851.1| ribosome recycling factor [Corynebacterium diphtheriae NCTC 13129]
gi|375291172|ref|YP_005125712.1| ribosome recycling factor [Corynebacterium diphtheriae 241]
gi|375293376|ref|YP_005127915.1| ribosome recycling factor [Corynebacterium diphtheriae INCA 402]
gi|376243108|ref|YP_005133960.1| ribosome recycling factor [Corynebacterium diphtheriae CDCE 8392]
gi|376246004|ref|YP_005136243.1| ribosome recycling factor [Corynebacterium diphtheriae HC01]
gi|376248791|ref|YP_005140735.1| ribosome recycling factor [Corynebacterium diphtheriae HC04]
gi|376251590|ref|YP_005138471.1| ribosome recycling factor [Corynebacterium diphtheriae HC03]
gi|376254593|ref|YP_005143052.1| ribosome recycling factor [Corynebacterium diphtheriae PW8]
gi|376257404|ref|YP_005145295.1| ribosome recycling factor [Corynebacterium diphtheriae VA01]
gi|376285010|ref|YP_005158220.1| ribosome recycling factor [Corynebacterium diphtheriae 31A]
gi|376288023|ref|YP_005160589.1| ribosome recycling factor [Corynebacterium diphtheriae BH8]
gi|376290707|ref|YP_005162954.1| ribosome recycling factor [Corynebacterium diphtheriae C7 (beta)]
gi|376293508|ref|YP_005165182.1| ribosome recycling factor [Corynebacterium diphtheriae HC02]
gi|47116991|sp|P61303.1|RRF_CORDI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|38200346|emb|CAE50032.1| ribosome recycling factor [Corynebacterium diphtheriae]
gi|371578525|gb|AEX42193.1| ribosome recycling factor [Corynebacterium diphtheriae 31A]
gi|371580843|gb|AEX44510.1| ribosome recycling factor [Corynebacterium diphtheriae 241]
gi|371583047|gb|AEX46713.1| ribosome recycling factor [Corynebacterium diphtheriae INCA 402]
gi|371585357|gb|AEX49022.1| ribosome recycling factor [Corynebacterium diphtheriae BH8]
gi|372104103|gb|AEX67700.1| ribosome recycling factor [Corynebacterium diphtheriae C7 (beta)]
gi|372106350|gb|AEX72412.1| ribosome recycling factor [Corynebacterium diphtheriae CDCE 8392]
gi|372108634|gb|AEX74695.1| ribosome recycling factor [Corynebacterium diphtheriae HC01]
gi|372110831|gb|AEX76891.1| ribosome recycling factor [Corynebacterium diphtheriae HC02]
gi|372113094|gb|AEX79153.1| ribosome recycling factor [Corynebacterium diphtheriae HC03]
gi|372115359|gb|AEX81417.1| ribosome recycling factor [Corynebacterium diphtheriae HC04]
gi|372117677|gb|AEX70147.1| ribosome recycling factor [Corynebacterium diphtheriae PW8]
gi|372119921|gb|AEX83655.1| ribosome recycling factor [Corynebacterium diphtheriae VA01]
Length = 185
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 11 ELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAI 70
EL +RTGRA+P M + +I + GV P+ +A +SV +++ L I PY+ + + E+E AI
Sbjct: 23 ELVNIRTGRANPAMFNGVIADYYGVPTPITQMATISVPEARMLLIKPYEMSMMNEIENAI 82
Query: 71 VSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK- 129
+S LG+NP DGQ L IP LT+E + M K+ ED K +IR R+K +D +KK
Sbjct: 83 RNSDLGVNPTNDGQVLRVTIPQLTEERRRDMAKLAKSKGEDGKIAIRNVRRKGMDQLKKI 142
Query: 130 -AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+D+++ EKE+D++T KYV D++ KE E+ E
Sbjct: 143 QKDGDAGEDEVQAAEKELDKVTAKYVAQVDEVVAKKEAELME 184
>gi|269837765|ref|YP_003319993.1| ribosome recycling factor [Sphaerobacter thermophilus DSM 20745]
gi|269787028|gb|ACZ39171.1| ribosome recycling factor [Sphaerobacter thermophilus DSM 20745]
Length = 185
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 102/165 (61%), Gaps = 2/165 (1%)
Query: 8 LSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELE 67
L REL +RTGRASPG+++ + V+ G PLN +A +S + + L + P+D + + +E
Sbjct: 20 LQRELAGIRTGRASPGLIERLEVDYYGTPTPLNQVAGISAPEPRLLVVQPWDRSAMSAIE 79
Query: 68 CAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMM 127
AI SS LGLNP DGQ + AIP LT+E +A+ +VV + E+ + +IR R+ AL +
Sbjct: 80 KAIRSSDLGLNPTNDGQVIRIAIPPLTEERRKALVRVVRQKVEESRVAIRNIRRDALAQV 139
Query: 128 KKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
K+ + +D +R E+++ ELT +Y+ AD I K KE E+ E
Sbjct: 140 KEMLQEKLIGEDDERRAEQQVQELTNRYINEADKIGKNKEAEVLE 184
>gi|427713965|ref|YP_007062589.1| ribosome recycling factor [Synechococcus sp. PCC 6312]
gi|427378094|gb|AFY62046.1| ribosome recycling factor [Synechococcus sp. PCC 6312]
Length = 182
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ A R +RTGRAS +LD I V+ G++ PL LA +S D+ T++I PYD
Sbjct: 10 MQKSVEATQRMFNSIRTGRASASLLDRITVDYYGIETPLRSLANISTPDATTITIQPYDR 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L ++E AI S LGLNP DG + IP LT + + + K VAK +E+ K +IR R
Sbjct: 70 SSLTQIEKAIQMSDLGLNPNNDGTAVRLNIPPLTTDRRKELVKTVAKLAEEGKVAIRNIR 129
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK G + L +DQ+K + +I +LT KY+ + KEK+I
Sbjct: 130 RDAVDAVKKQGKNGELSEDQVKDSQDQIQKLTDKYIAKIESHLSEKEKDI 179
>gi|400289788|ref|ZP_10791815.1| ribosome recycling factor [Streptococcus ratti FA-1 = DSM 20564]
gi|399920579|gb|EJN93396.1| ribosome recycling factor [Streptococcus ratti FA-1 = DSM 20564]
Length = 185
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
E + +L+RE +R GRA+ +LD I VE G PLN LA ++V +++ L ++P+D
Sbjct: 13 FEQSHQSLAREFGSIRAGRANASLLDRIEVEYYGAPTPLNQLASITVPEARVLLVSPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK++E AI +S +G+NP DG + IPALT+E + + K V K E+ K +IR R
Sbjct: 73 SSLKDIEHAINASDIGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 133 RDAMDEAKKQEKAKEITEDELKSLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|421074520|ref|ZP_15535551.1| Ribosome-recycling factor [Pelosinus fermentans JBW45]
gi|392527391|gb|EIW50486.1| Ribosome-recycling factor [Pelosinus fermentans JBW45]
Length = 186
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI AL REL+ LR GRA+P +LD I V+ G P+N +A ++V + + ++I ++
Sbjct: 14 MKKAIDALRRELSTLRAGRATPALLDKITVDYYGTPTPINQVANIAVPEPRMITIQAWEK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI+ S LGL P DG + IP LT++ + KVV K +ED + IR SR
Sbjct: 74 SMIAQIEKAILKSDLGLTPNSDGVVIRLNIPQLTQQRRIELVKVVHKKAEDSRIVIRNSR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK ++ +D +K+ + ++ +LT KYVK D I AKEKEI E
Sbjct: 134 RDANDAIKKLEKDKAISEDDVKKAQDDMQKLTDKYVKEVDTIMNAKEKEIME 185
>gi|300780937|ref|ZP_07090791.1| ribosome recycling factor [Corynebacterium genitalium ATCC 33030]
gi|300532644|gb|EFK53705.1| ribosome recycling factor [Corynebacterium genitalium ATCC 33030]
Length = 185
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 95/162 (58%), Gaps = 2/162 (1%)
Query: 11 ELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAI 70
EL +RTGRA+P M + ++ E G P+N +A +SV + + L I PYDP+T+ E+E AI
Sbjct: 23 ELVTIRTGRANPAMFNSVMAEFYGAPTPINQMATISVPEPRMLLIKPYDPSTMGEIENAI 82
Query: 71 VSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK- 129
+S LG+NP DGQ + IP LT+E + + K ED K +IR R+ +D +KK
Sbjct: 83 RNSDLGVNPTDDGQVIRVTIPQLTEERRRDLVKQAKGKGEDGKIAIRNVRRSGMDALKKI 142
Query: 130 -AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+D++ EKE+D+ T KYV DD+ KE E+ E
Sbjct: 143 QKDGDAGEDEVSAAEKELDKTTAKYVDMIDDLVNKKEAELLE 184
>gi|400977594|pdb|4GFQ|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of Ribosome
Recycling Factor (Frr) From Bacillus Anthracis
Length = 209
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRAS +LD + V+ G P+ LA ++V +++ L I PYD
Sbjct: 37 MEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 96
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI+ + LGLNP DG + A PALT+E + + KVV K +E+ K ++R R
Sbjct: 97 TSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVR 156
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D ++ ++I + T KY+ D+I K KEKEI E
Sbjct: 157 RDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 208
>gi|428775626|ref|YP_007167413.1| ribosome recycling factor [Halothece sp. PCC 7418]
gi|428689905|gb|AFZ43199.1| ribosome recycling factor [Halothece sp. PCC 7418]
Length = 182
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I A + LRTGRA+ +LD ++VE G++ PL LA +S D+ T++I PYD
Sbjct: 10 MKKSIDATQQSFNSLRTGRANASVLDRVMVEYYGMETPLKSLANISTPDATTITIQPYDK 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+L+++E AI S +GL P DG+ + IP LT E Q + K+ K +E+ + SIR R
Sbjct: 70 GSLEQIEKAISMSDVGLTPNNDGEMVRLNIPPLTSERRQELVKIAGKYAEEGRVSIRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A++ ++KA L +D+ ++++I +LT KYV D++ KAKE++I
Sbjct: 130 RDAIEEVRKAEKNHELSEDEAHDIQEKIQKLTDKYVSKVDELLKAKEEDI 179
>gi|420154987|ref|ZP_14661858.1| ribosome recycling factor [Clostridium sp. MSTE9]
gi|394759829|gb|EJF42492.1| ribosome recycling factor [Clostridium sp. MSTE9]
Length = 184
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 110/172 (63%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + L+ E T +R GRA+P +LD I+V+ G +N LA +SV +++ L+I P+D
Sbjct: 12 MKKTLSVLTNEYTTIRAGRANPAVLDKIMVDYYGTPTAVNQLAAISVSEARLLTIQPWDA 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++++ +E AI+SS LG+NP+ DG+ + P LT+E + + K +AK SE+ K ++R R
Sbjct: 72 SSVRAIEKAILSSELGINPQSDGKVIRLMFPQLTEERRRDITKDIAKMSEEAKVAVRSIR 131
Query: 121 QKALDMM--KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A++ + KK + + +D +K+ EK+ +LT KY K D + + K+KEI E
Sbjct: 132 RDAIEKLKAKKKTAEITEDDLKQGEKKTQDLTDKYCKEIDILFEKKQKEIME 183
>gi|94985150|ref|YP_604514.1| ribosome recycling factor [Deinococcus geothermalis DSM 11300]
gi|166230783|sp|Q1IZI9.1|RRF_DEIGD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|94555431|gb|ABF45345.1| ribosome recycling factor [Deinococcus geothermalis DSM 11300]
Length = 183
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL L+ LRTGRA+PG+L ++VE G MP++ +A ++ D++TL I P+D
Sbjct: 15 MGKAIEALENNLSVLRTGRANPGILKKVMVEYYGSSMPIDQVASITTPDARTLVITPWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI S LGLNP G + ++P LT+E + + K +E+ + +IR R
Sbjct: 75 GALNPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEEARVAIRSIR 134
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ ALD +KK + D++KR E E+ ++T +Y+K +D KE+EI
Sbjct: 135 KHALDEVKKV-EGVGDDEIKRAEAEVQKITDEYIKRVEDTFHKKEQEI 181
>gi|170077573|ref|YP_001734211.1| ribosome recycling factor [Synechococcus sp. PCC 7002]
gi|238689043|sp|B1XJ13.1|RRF_SYNP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|169885242|gb|ACA98955.1| ribosome recycling factor [Synechococcus sp. PCC 7002]
Length = 182
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I A R LRTGRAS +LD I VE G + PL LA +S DS T+ I P+D
Sbjct: 10 MQKTIEATQRSFNTLRTGRASASLLDRITVEYYGAETPLKSLASISTPDSSTIMIQPFDR 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+L ++E AI S LGL P DG + IP LTKE Q + K K +E+ K ++R R
Sbjct: 70 GSLSDVERAISMSDLGLTPNNDGTNIRLNIPPLTKERRQELVKTAGKLAEEGKVALRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K S + +D+ + L+ +I ++T ++ DD+ K KEK+I
Sbjct: 130 RDAIDDVRKQEKNSDISEDESRSLQDDIQKVTDEFTTKIDDLLKIKEKDI 179
>gi|213964585|ref|ZP_03392785.1| ribosome recycling factor [Corynebacterium amycolatum SK46]
gi|213952778|gb|EEB64160.1| ribosome recycling factor [Corynebacterium amycolatum SK46]
Length = 185
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 99/162 (61%), Gaps = 2/162 (1%)
Query: 11 ELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAI 70
ELT +RTGRA+P M + +I E GV P+ +A +SV + + L I PY+ + + ++E AI
Sbjct: 23 ELTHIRTGRANPAMFNGVIAEYYGVPTPITQMATISVPEPRMLLIKPYELSVMGDIENAI 82
Query: 71 VSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK- 129
+S LG+NP DGQ L IP LT+E + M KV ED K +IR R+K ++ +KK
Sbjct: 83 RNSDLGVNPTNDGQVLRVTIPQLTEERRREMVKVSRSKGEDAKIAIRNVRRKGMETLKKI 142
Query: 130 -AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+D+++ EKE+D++TK YV+ D + + KE E+ E
Sbjct: 143 QKDGDAGEDEVQAGEKELDQVTKNYVEQVDSLVERKEAELME 184
>gi|158338603|ref|YP_001519780.1| ribosome recycling factor [Acaryochloris marina MBIC11017]
gi|158308844|gb|ABW30461.1| ribosome recycling factor [Acaryochloris marina MBIC11017]
Length = 173
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I A+ R L +RTGRA+ +LD I VE G + PL LA +S D+ T++I P+DP
Sbjct: 1 MQKSIEAMKRSLNTIRTGRANASLLDRITVEYYGTETPLRSLATISTPDASTITIQPFDP 60
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L ++E +I S +GL P DG + IP LT+E + K+ K +E+ K +IR R
Sbjct: 61 SSLTDIERSISLSDVGLVPNNDGSAIRLNIPPLTEERRKDFVKMAGKIAEEGKVAIRNIR 120
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +K G S + +D+ K L+ +I LT KY D I KE EI
Sbjct: 121 RDAIDTARKQGKSGDISEDESKDLQDKIQGLTDKYTGQVDKILAEKETEI 170
>gi|270307747|ref|YP_003329805.1| ribosome recycling factor [Dehalococcoides sp. VS]
gi|270153639|gb|ACZ61477.1| ribosome recycling factor [Dehalococcoides sp. VS]
Length = 185
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A++ LS+EL+ +RTGR+SP +++HI VE GV P+NHLA +S D + ++I P+D
Sbjct: 13 MTASLDVLSQELSGIRTGRSSPALVEHIRVEYAGVPTPINHLAGISAPDPRYITIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LGL P DG + IP L++E Q M K+V K E+ K ++R R
Sbjct: 73 SCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVNKRLEEDKIAMRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D MKK + +D +KR ++ ++T ++ AD + KE E+ +
Sbjct: 133 RDAMDEMKKLEKAKEISQDDLKRGSDQLQKITDSFIAKADKLGADKETELKQ 184
>gi|333979940|ref|YP_004517885.1| Ribosome-recycling factor [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823421|gb|AEG16084.1| Ribosome-recycling factor [Desulfotomaculum kuznetsovii DSM 6115]
Length = 194
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + + +E LR GRA+P +LD ++V G P+N LA +SV + + L I P+D
Sbjct: 22 MKKTVELVKKEFASLRAGRATPALLDKVLVSYYGTPTPINQLATISVPEPRLLVIQPWDK 81
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+E AI+ S LG+ P DG + AIP LT+E + KVV K +E+ + +IR R
Sbjct: 82 TILPEIERAILKSDLGITPTSDGTVIRLAIPQLTQERRAELVKVVKKKAEEGRVAIRNIR 141
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ D +K+ + +D+++R + EI +LT KY+K D + AKE+EI
Sbjct: 142 RELNDKVKQQQKNGEISEDELRRTQDEIQKLTDKYIKEIDQLVSAKEQEI 191
>gi|163941562|ref|YP_001646446.1| ribosome recycling factor [Bacillus weihenstephanensis KBAB4]
gi|229013007|ref|ZP_04170172.1| Ribosome-recycling factor [Bacillus mycoides DSM 2048]
gi|229061427|ref|ZP_04198772.1| Ribosome-recycling factor [Bacillus cereus AH603]
gi|229134631|ref|ZP_04263441.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST196]
gi|229168563|ref|ZP_04296286.1| Ribosome-recycling factor [Bacillus cereus AH621]
gi|229174490|ref|ZP_04302022.1| Ribosome-recycling factor [Bacillus cereus MM3]
gi|423367867|ref|ZP_17345299.1| ribosome-recycling factor [Bacillus cereus VD142]
gi|423401334|ref|ZP_17378507.1| ribosome-recycling factor [Bacillus cereus BAG2X1-2]
gi|423452875|ref|ZP_17429728.1| ribosome-recycling factor [Bacillus cereus BAG5X1-1]
gi|423457993|ref|ZP_17434790.1| ribosome-recycling factor [Bacillus cereus BAG5X2-1]
gi|423470038|ref|ZP_17446782.1| ribosome-recycling factor [Bacillus cereus BAG6O-2]
gi|423477962|ref|ZP_17454677.1| ribosome-recycling factor [Bacillus cereus BAG6X1-1]
gi|423483414|ref|ZP_17460104.1| ribosome-recycling factor [Bacillus cereus BAG6X1-2]
gi|423488999|ref|ZP_17465681.1| ribosome-recycling factor [Bacillus cereus BtB2-4]
gi|423494724|ref|ZP_17471368.1| ribosome-recycling factor [Bacillus cereus CER057]
gi|423498484|ref|ZP_17475101.1| ribosome-recycling factor [Bacillus cereus CER074]
gi|423511858|ref|ZP_17488389.1| ribosome-recycling factor [Bacillus cereus HuA2-1]
gi|423518514|ref|ZP_17494995.1| ribosome-recycling factor [Bacillus cereus HuA2-4]
gi|423522346|ref|ZP_17498819.1| ribosome-recycling factor [Bacillus cereus HuA4-10]
gi|423558613|ref|ZP_17534915.1| ribosome-recycling factor [Bacillus cereus MC67]
gi|423592180|ref|ZP_17568211.1| ribosome-recycling factor [Bacillus cereus VD048]
gi|423598865|ref|ZP_17574865.1| ribosome-recycling factor [Bacillus cereus VD078]
gi|423661337|ref|ZP_17636506.1| ribosome-recycling factor [Bacillus cereus VDM022]
gi|423669398|ref|ZP_17644427.1| ribosome-recycling factor [Bacillus cereus VDM034]
gi|423674423|ref|ZP_17649362.1| ribosome-recycling factor [Bacillus cereus VDM062]
gi|229564221|sp|A9VT62.1|RRF_BACWK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|163863759|gb|ABY44818.1| ribosome recycling factor [Bacillus weihenstephanensis KBAB4]
gi|228609050|gb|EEK66340.1| Ribosome-recycling factor [Bacillus cereus MM3]
gi|228614969|gb|EEK72071.1| Ribosome-recycling factor [Bacillus cereus AH621]
gi|228648892|gb|EEL04917.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST196]
gi|228717850|gb|EEL69498.1| Ribosome-recycling factor [Bacillus cereus AH603]
gi|228748261|gb|EEL98121.1| Ribosome-recycling factor [Bacillus mycoides DSM 2048]
gi|401082728|gb|EJP90993.1| ribosome-recycling factor [Bacillus cereus VD142]
gi|401139434|gb|EJQ46996.1| ribosome-recycling factor [Bacillus cereus BAG5X1-1]
gi|401140965|gb|EJQ48520.1| ribosome-recycling factor [Bacillus cereus BAG6X1-2]
gi|401148377|gb|EJQ55870.1| ribosome-recycling factor [Bacillus cereus BAG5X2-1]
gi|401150817|gb|EJQ58269.1| ribosome-recycling factor [Bacillus cereus CER057]
gi|401160533|gb|EJQ67911.1| ribosome-recycling factor [Bacillus cereus CER074]
gi|401160722|gb|EJQ68097.1| ribosome-recycling factor [Bacillus cereus HuA2-4]
gi|401175040|gb|EJQ82243.1| ribosome-recycling factor [Bacillus cereus HuA4-10]
gi|401191881|gb|EJQ98903.1| ribosome-recycling factor [Bacillus cereus MC67]
gi|401232313|gb|EJR38815.1| ribosome-recycling factor [Bacillus cereus VD048]
gi|401237135|gb|EJR43592.1| ribosome-recycling factor [Bacillus cereus VD078]
gi|401298525|gb|EJS04125.1| ribosome-recycling factor [Bacillus cereus VDM034]
gi|401301378|gb|EJS06967.1| ribosome-recycling factor [Bacillus cereus VDM022]
gi|401309974|gb|EJS15307.1| ribosome-recycling factor [Bacillus cereus VDM062]
gi|401654324|gb|EJS71867.1| ribosome-recycling factor [Bacillus cereus BAG2X1-2]
gi|402428124|gb|EJV60221.1| ribosome-recycling factor [Bacillus cereus BAG6X1-1]
gi|402432247|gb|EJV64306.1| ribosome-recycling factor [Bacillus cereus BtB2-4]
gi|402437290|gb|EJV69314.1| ribosome-recycling factor [Bacillus cereus BAG6O-2]
gi|402450119|gb|EJV81953.1| ribosome-recycling factor [Bacillus cereus HuA2-1]
Length = 185
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRAS +LD + V+ G P+ LA ++V +++ L I PYD
Sbjct: 13 MEKAVAAYSRELATVRAGRASSSVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI+ + LGLNP DG + A PALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + D +KK + +D ++ ++I + T KY+ D+I K KEKEI E
Sbjct: 133 RDSNDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184
>gi|30263828|ref|NP_846205.1| ribosome recycling factor [Bacillus anthracis str. Ames]
gi|47529252|ref|YP_020601.1| ribosome recycling factor [Bacillus anthracis str. 'Ames Ancestor']
gi|49186674|ref|YP_029926.1| ribosome recycling factor [Bacillus anthracis str. Sterne]
gi|65321151|ref|ZP_00394110.1| COG0233: Ribosome recycling factor [Bacillus anthracis str. A2012]
gi|170706904|ref|ZP_02897362.1| ribosome recycling factor [Bacillus anthracis str. A0389]
gi|229604313|ref|YP_002868062.1| ribosome recycling factor [Bacillus anthracis str. A0248]
gi|33301536|sp|Q81WL1.1|RRF_BACAN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809489|sp|C3P5M6.1|RRF_BACAA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|30258472|gb|AAP27691.1| ribosome recycling factor [Bacillus anthracis str. Ames]
gi|47504400|gb|AAT33076.1| ribosome recycling factor [Bacillus anthracis str. 'Ames Ancestor']
gi|49180601|gb|AAT55977.1| ribosome recycling factor [Bacillus anthracis str. Sterne]
gi|170128322|gb|EDS97191.1| ribosome recycling factor [Bacillus anthracis str. A0389]
gi|229268721|gb|ACQ50358.1| ribosome recycling factor [Bacillus anthracis str. A0248]
Length = 185
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRAS +LD + V+ G P+ LA ++V +++ L I PYD
Sbjct: 13 MEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI+ + LGLNP DG + A PALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D ++ ++I + T KY+ D+I K KEKEI E
Sbjct: 133 RDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184
>gi|429220984|ref|YP_007182628.1| ribosome recycling factor [Deinococcus peraridilitoris DSM 19664]
gi|429131847|gb|AFZ68862.1| ribosome recycling factor [Deinococcus peraridilitoris DSM 19664]
Length = 182
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 102/168 (60%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI AL L+ LRTGRA+PG+L I VE G MPL+ +A V+ D++TL + P+D
Sbjct: 14 MQKAIEALESNLSVLRTGRANPGILKKIQVEYYGSTMPLDQVASVTTPDARTLLVTPWDR 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI S LGLNP G + +P LT+E + + K +ED K ++R R
Sbjct: 74 GALGHIERAIRDSDLGLNPNNKGDAIFITLPVLTEERRKDLVKTARTYAEDGKIAVRNVR 133
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ AL+ +KK + +D++KR E E+ +LT ++V +++ + KE+EI
Sbjct: 134 KSALEDIKKQ-EGVGEDEIKRAEGEVQKLTDEFVNRVEEVLERKEQEI 180
>gi|410866734|ref|YP_006981345.1| Ribosome-recycling factor [Propionibacterium acidipropionici ATCC
4875]
gi|410823375|gb|AFV89990.1| Ribosome-recycling factor [Propionibacterium acidipropionici ATCC
4875]
Length = 185
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME+A+ + +RTGRA+P M + I+V+ G PL LA V +++T+ I+PYD
Sbjct: 13 MESAVSHAREDFAAIRTGRANPAMFNKIMVDYYGAMTPLQQLASFQVPEARTVLISPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ +E A+ S LG+NP DG + +P+LT+E + K+ +E+ + ++R R
Sbjct: 73 GSVNAVEKAVRDSDLGVNPSTDGNVVRCVLPSLTEERRKEYTKMAKAKAEEGRIAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +DQ+ RLEKE+D++TKK+V+ D++ KAKE E+ E
Sbjct: 133 RSANDDLKKQEKDKEISEDQLTRLEKELDQVTKKHVEEIDELLKAKEAELME 184
>gi|296132870|ref|YP_003640117.1| ribosome recycling factor [Thermincola potens JR]
gi|296031448|gb|ADG82216.1| ribosome recycling factor [Thermincola potens JR]
Length = 185
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ AL ++L LRTGRA+P +L+ I V+ GV P+N +A VS + + L I P+D
Sbjct: 13 MRKAVEALRKDLATLRTGRATPALLEKIQVDYYGVPTPINQMAKVSAPEPRLLVIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L E+E AI+ S LGL P DG + IP LT+E + K+ K +ED + +IR R
Sbjct: 73 SVLGEIEKAIMKSDLGLTPNNDGTVIRLNIPQLTQERRAELVKICKKKAEDGRVAIRNIR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +K+ S + +D +R ++EI +LT KY+K D + + KE+EI E
Sbjct: 133 RDANDQLKEFEKSGDISEDDNRRGQEEIQKLTDKYIKEVDQLLEHKEQEIME 184
>gi|441496848|ref|ZP_20979074.1| Ribosome recycling factor [Fulvivirga imtechensis AK7]
gi|441439321|gb|ELR72639.1| Ribosome recycling factor [Fulvivirga imtechensis AK7]
Length = 186
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 104/171 (60%), Gaps = 5/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI +S EL K+R G+ASP ML+ ++VE G P+N +A V+ D++TL I P++
Sbjct: 15 MNKAIKHVSGELVKIRAGKASPTMLEGLMVEYYGNPTPINQVASVTAPDARTLMIKPWEK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI++S LGLNP+ DGQ++I IP LT+E + K V E K S+R R
Sbjct: 75 TVIPDIEKAIINSDLGLNPQNDGQQVIINIPQLTEERRLTLVKQVKHEGEQGKVSVRNIR 134
Query: 121 QKALDMMK---KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ D +K K G+S +D +KR E ++ LT +Y K D+I KE EI
Sbjct: 135 KETNDNLKQLQKEGAS--EDDIKRAEDKVQALTDEYTKKIDEILAKKESEI 183
>gi|312111646|ref|YP_003989962.1| ribosome recycling factor [Geobacillus sp. Y4.1MC1]
gi|336236021|ref|YP_004588637.1| ribosome recycling factor [Geobacillus thermoglucosidasius
C56-YS93]
gi|423720565|ref|ZP_17694747.1| ribosome recycling factor [Geobacillus thermoglucosidans
TNO-09.020]
gi|311216747|gb|ADP75351.1| ribosome recycling factor [Geobacillus sp. Y4.1MC1]
gi|335362876|gb|AEH48556.1| ribosome recycling factor [Geobacillus thermoglucosidasius
C56-YS93]
gi|383365918|gb|EID43209.1| ribosome recycling factor [Geobacillus thermoglucosidans
TNO-09.020]
Length = 185
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A +REL +R GRA+P +L+ I V+ G P+ LA +S +++ L I PYD
Sbjct: 13 MDKAVQAFTRELATIRAGRANPSLLEKITVDYYGAPTPIIQLASISAPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++E AI+SS LGL P DG + AIP LT+E + + K+V K SED K ++R R
Sbjct: 73 SVIKDIEKAILSSDLGLTPSNDGSVIRIAIPPLTEERRRELVKLVKKYSEDAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ +I +LT ++ D I K KEKE+ E
Sbjct: 133 RDANDELKKLEKNGEITEDELRGYIDDIQKLTDNHIAKIDTITKEKEKEVME 184
>gi|365134456|ref|ZP_09343282.1| ribosome recycling factor [Subdoligranulum sp. 4_3_54A2FAA]
gi|363614032|gb|EHL65535.1| ribosome recycling factor [Subdoligranulum sp. 4_3_54A2FAA]
Length = 184
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I L +E +R GRA+P +LD + V+ G P+N +A VSV +++ L+I+P+D
Sbjct: 12 MTGVINHLVKEHATIRAGRANPAILDKVTVDYYGTPTPINQVAAVSVAEARVLTISPWDA 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI++S +G+NP DG+ + PA T+E + + K E+ K ++R R
Sbjct: 72 SLMHAIEKAILTSDIGINPTNDGRVMRLVFPAPTEERRKQLTKEAMHMGEEAKIAVRNVR 131
Query: 121 QKALDMM--KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ ALD KK L +D +K LE E+ ++T K+VK D C+AK KEI E
Sbjct: 132 RDALDKFKAKKKAGELTEDDLKNLENEMQKITDKFVKEIDKTCEAKNKEIME 183
>gi|49478397|ref|YP_037885.1| ribosome recycling factor [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|52141664|ref|YP_085165.1| ribosome recycling factor [Bacillus cereus E33L]
gi|118479046|ref|YP_896197.1| ribosome recycling factor [Bacillus thuringiensis str. Al Hakam]
gi|165872626|ref|ZP_02217257.1| ribosome recycling factor [Bacillus anthracis str. A0488]
gi|167635820|ref|ZP_02394129.1| ribosome recycling factor [Bacillus anthracis str. A0442]
gi|167639854|ref|ZP_02398123.1| ribosome recycling factor [Bacillus anthracis str. A0193]
gi|170687902|ref|ZP_02879116.1| ribosome recycling factor [Bacillus anthracis str. A0465]
gi|177652096|ref|ZP_02934642.1| ribosome recycling factor [Bacillus anthracis str. A0174]
gi|190568475|ref|ZP_03021382.1| ribosome recycling factor [Bacillus anthracis str. Tsiankovskii-I]
gi|196036913|ref|ZP_03104297.1| ribosome recycling factor [Bacillus cereus W]
gi|196042138|ref|ZP_03109421.1| ribosome recycling factor [Bacillus cereus NVH0597-99]
gi|196044581|ref|ZP_03111816.1| ribosome recycling factor [Bacillus cereus 03BB108]
gi|218904952|ref|YP_002452786.1| ribosome recycling factor [Bacillus cereus AH820]
gi|225865805|ref|YP_002751183.1| ribosome recycling factor [Bacillus cereus 03BB102]
gi|227813268|ref|YP_002813277.1| ribosome recycling factor [Bacillus anthracis str. CDC 684]
gi|228916461|ref|ZP_04080027.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228928872|ref|ZP_04091904.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935138|ref|ZP_04097965.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947543|ref|ZP_04109833.1| Ribosome-recycling factor [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|229123337|ref|ZP_04252541.1| Ribosome-recycling factor [Bacillus cereus 95/8201]
gi|229162760|ref|ZP_04290717.1| Ribosome-recycling factor [Bacillus cereus R309803]
gi|229186063|ref|ZP_04313233.1| Ribosome-recycling factor [Bacillus cereus BGSC 6E1]
gi|254683469|ref|ZP_05147329.1| ribosome recycling factor [Bacillus anthracis str. CNEVA-9066]
gi|254721990|ref|ZP_05183779.1| ribosome recycling factor [Bacillus anthracis str. A1055]
gi|254735862|ref|ZP_05193568.1| ribosome recycling factor [Bacillus anthracis str. Western North
America USA6153]
gi|254739612|ref|ZP_05197306.1| ribosome recycling factor [Bacillus anthracis str. Kruger B]
gi|254756015|ref|ZP_05208046.1| ribosome recycling factor [Bacillus anthracis str. Vollum]
gi|254759324|ref|ZP_05211349.1| ribosome recycling factor [Bacillus anthracis str. Australia 94]
gi|301055314|ref|YP_003793525.1| ribosome releasing factor [Bacillus cereus biovar anthracis str.
CI]
gi|376267720|ref|YP_005120432.1| Ribosome recycling factor [Bacillus cereus F837/76]
gi|421507364|ref|ZP_15954284.1| ribosome recycling factor [Bacillus anthracis str. UR-1]
gi|421639579|ref|ZP_16080170.1| ribosome recycling factor [Bacillus anthracis str. BF1]
gi|423550427|ref|ZP_17526754.1| ribosome-recycling factor [Bacillus cereus ISP3191]
gi|60390240|sp|Q636K2.1|RRF_BACCZ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|60390255|sp|Q6HEZ1.1|RRF_BACHK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166230411|sp|A0RHJ7.1|RRF_BACAH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|226703251|sp|B7JJA2.1|RRF_BACC0 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809490|sp|C3L7A3.1|RRF_BACAC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809491|sp|C1EP48.1|RRF_BACC3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|49329953|gb|AAT60599.1| ribosome recycling factor [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|51975133|gb|AAU16683.1| ribosome recycling factor [Bacillus cereus E33L]
gi|118418271|gb|ABK86690.1| ribosome recycling factor [Bacillus thuringiensis str. Al Hakam]
gi|164711658|gb|EDR17204.1| ribosome recycling factor [Bacillus anthracis str. A0488]
gi|167512255|gb|EDR87632.1| ribosome recycling factor [Bacillus anthracis str. A0193]
gi|167528777|gb|EDR91535.1| ribosome recycling factor [Bacillus anthracis str. A0442]
gi|170668218|gb|EDT18967.1| ribosome recycling factor [Bacillus anthracis str. A0465]
gi|172082465|gb|EDT67530.1| ribosome recycling factor [Bacillus anthracis str. A0174]
gi|190560479|gb|EDV14457.1| ribosome recycling factor [Bacillus anthracis str. Tsiankovskii-I]
gi|195990468|gb|EDX54452.1| ribosome recycling factor [Bacillus cereus W]
gi|196024616|gb|EDX63288.1| ribosome recycling factor [Bacillus cereus 03BB108]
gi|196026990|gb|EDX65614.1| ribosome recycling factor [Bacillus cereus NVH0597-99]
gi|218535243|gb|ACK87641.1| ribosome recycling factor [Bacillus cereus AH820]
gi|225788805|gb|ACO29022.1| ribosome recycling factor [Bacillus cereus 03BB102]
gi|227004475|gb|ACP14218.1| ribosome recycling factor [Bacillus anthracis str. CDC 684]
gi|228597482|gb|EEK55132.1| Ribosome-recycling factor [Bacillus cereus BGSC 6E1]
gi|228620642|gb|EEK77511.1| Ribosome-recycling factor [Bacillus cereus R309803]
gi|228660113|gb|EEL15749.1| Ribosome-recycling factor [Bacillus cereus 95/8201]
gi|228812063|gb|EEM58394.1| Ribosome-recycling factor [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228824503|gb|EEM70308.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830679|gb|EEM76284.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843040|gb|EEM88122.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|300377483|gb|ADK06387.1| ribosome releasing factor [Bacillus cereus biovar anthracis str.
CI]
gi|364513520|gb|AEW56919.1| Ribosome recycling factor [Bacillus cereus F837/76]
gi|401190043|gb|EJQ97093.1| ribosome-recycling factor [Bacillus cereus ISP3191]
gi|401822498|gb|EJT21648.1| ribosome recycling factor [Bacillus anthracis str. UR-1]
gi|403393244|gb|EJY90489.1| ribosome recycling factor [Bacillus anthracis str. BF1]
Length = 185
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRAS +LD + V+ G P+ LA ++V +++ L I PYD
Sbjct: 13 MEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI+ + LGLNP DG + A PALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D ++ ++I + T KY+ D+I K KEKEI E
Sbjct: 133 RDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184
>gi|294500908|ref|YP_003564608.1| ribosome recycling factor [Bacillus megaterium QM B1551]
gi|295706254|ref|YP_003599329.1| ribosome recycling factor [Bacillus megaterium DSM 319]
gi|384045241|ref|YP_005493258.1| Ribosome recycling factor [Bacillus megaterium WSH-002]
gi|294350845|gb|ADE71174.1| ribosome recycling factor [Bacillus megaterium QM B1551]
gi|294803913|gb|ADF40979.1| ribosome recycling factor [Bacillus megaterium DSM 319]
gi|345442932|gb|AEN87949.1| Ribosome recycling factor [Bacillus megaterium WSH-002]
Length = 185
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI + SREL +R GRAS +LD + VE G P+N LA VSV +++ L I PYD
Sbjct: 13 MEKAIQSFSRELASIRAGRASASLLDRVTVEYYGAPTPINQLAQVSVPEARMLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI+ S LGL P DG + +IPALT+E + + K+V K +E+ K ++R R
Sbjct: 73 SQIGEVEKAILKSDLGLTPTSDGTIIRLSIPALTEERRRELVKMVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D KK + +D ++ +I +LT ++ D + K KE+EI
Sbjct: 133 RDANDDFKKLEKKGEITEDDLRGYSDDIQKLTDDHIVKVDKVAKDKEEEI 182
>gi|229019019|ref|ZP_04175860.1| Ribosome-recycling factor [Bacillus cereus AH1273]
gi|229025264|ref|ZP_04181684.1| Ribosome-recycling factor [Bacillus cereus AH1272]
gi|423389869|ref|ZP_17367095.1| ribosome-recycling factor [Bacillus cereus BAG1X1-3]
gi|228736017|gb|EEL86592.1| Ribosome-recycling factor [Bacillus cereus AH1272]
gi|228742259|gb|EEL92418.1| Ribosome-recycling factor [Bacillus cereus AH1273]
gi|401641960|gb|EJS59677.1| ribosome-recycling factor [Bacillus cereus BAG1X1-3]
Length = 185
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRAS +LD + V+ G P+ LA ++V +++ L I PYD
Sbjct: 13 MEKAVAAYSRELATVRAGRASSSVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI+ + LGLNP DG + A PALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D ++ ++I + T KY+ D+I K KEKEI E
Sbjct: 133 RDGNDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184
>gi|333919252|ref|YP_004492833.1| ribosome-recycling factor [Amycolicicoccus subflavus DQS3-9A1]
gi|333481473|gb|AEF40033.1| Ribosome-recycling factor [Amycolicicoccus subflavus DQS3-9A1]
Length = 185
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ EL +RTGRA+PGM I+++ G P+ LA ++V +++ + I PYD
Sbjct: 13 MEKAVSVAKDELGSIRTGRANPGMFSRIVIDYYGAPTPITQLASINVPEARLVVIKPYDT 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI +S LG+NP DG + A+P LT+E + + K ED + ++R R
Sbjct: 73 SQLSAIETAIRNSDLGVNPGNDGAIIRIAVPQLTEERRRDLAKQARSKGEDARVAVRNVR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA+D + +K G + +D++ R EKEID+LT KY D++ K KE E+ E
Sbjct: 133 RKAMDELSRIQKDGEA-GEDEVGRAEKEIDKLTAKYSAQVDELVKHKESELME 184
>gi|451947681|ref|YP_007468276.1| ribosome recycling factor [Desulfocapsa sulfexigens DSM 10523]
gi|451907029|gb|AGF78623.1| ribosome recycling factor [Desulfocapsa sulfexigens DSM 10523]
Length = 184
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ EL+K+RTGRAS +LD I V+ G +MPLN +A +++ +++ ++I P+DP
Sbjct: 12 MEKSVDTFKNELSKVRTGRASISLLDGISVDAYGSQMPLNQVATMTIPENRMIAIQPWDP 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+ S LGL P+ DG+ + IP LT+E + + K V K +ED + ++R R
Sbjct: 72 QMVPAIERAILKSNLGLAPQNDGKVIRLTIPQLTEERRKELVKQVRKVAEDFRVAVRNVR 131
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A+D +K K + +D + +L+ + + T YVK D + + KEKE+ E
Sbjct: 132 REAIDALKQQKKDKEISEDDLFKLQDDAQKETDTYVKQIDQVTEHKEKEMME 183
>gi|403234769|ref|ZP_10913355.1| ribosome recycling factor [Bacillus sp. 10403023]
Length = 185
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI ALSREL +R GRA+P +LD + V+ G PLN LA ++V +++ L I PYD
Sbjct: 13 MSKAIQALSRELATVRAGRANPAILDKVTVDYYGAPTPLNQLASINVPEARMLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L ++E AI + LGLNP DG + +IP LT+E + + K+V K +E+ K ++R R
Sbjct: 73 SVLGDMEKAIQKADLGLNPTNDGSIIRISIPPLTEERRRELVKLVKKYAEESKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D+++ L +++ ++T + + D + K KEKEI E
Sbjct: 133 RDGNDELKKLEKNGEITEDELRSLTEDVQKITDESISKIDSVSKEKEKEIME 184
>gi|392960425|ref|ZP_10325893.1| Ribosome-recycling factor [Pelosinus fermentans DSM 17108]
gi|421054818|ref|ZP_15517783.1| ribosome recycling factor [Pelosinus fermentans B4]
gi|421058898|ref|ZP_15521543.1| Ribosome-recycling factor [Pelosinus fermentans B3]
gi|421064787|ref|ZP_15526626.1| Ribosome-recycling factor [Pelosinus fermentans A12]
gi|421071680|ref|ZP_15532796.1| Ribosome-recycling factor [Pelosinus fermentans A11]
gi|392440499|gb|EIW18179.1| ribosome recycling factor [Pelosinus fermentans B4]
gi|392446945|gb|EIW24216.1| Ribosome-recycling factor [Pelosinus fermentans A11]
gi|392455002|gb|EIW31809.1| Ribosome-recycling factor [Pelosinus fermentans DSM 17108]
gi|392459940|gb|EIW36300.1| Ribosome-recycling factor [Pelosinus fermentans B3]
gi|392460383|gb|EIW36691.1| Ribosome-recycling factor [Pelosinus fermentans A12]
Length = 186
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI AL REL+ LR GRA+P +LD I V+ G P+N +A ++V + + ++I ++
Sbjct: 14 MKKAIDALRRELSTLRAGRATPALLDKITVDYYGTPTPINQVANIAVPEPRMITIQAWEK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI+ S LGL P DG + IP LT++ + KVV K +ED + IR SR
Sbjct: 74 SMIAQIEKAILKSDLGLTPNSDGVVIRLNIPQLTQQRRIELVKVVHKKAEDSRIVIRNSR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK ++ +D +K+ + ++ +LT KYVK D I AKEKEI E
Sbjct: 134 RDANDAIKKLEKDKAISEDDVKKAQDDMQKLTDKYVKEVDAIMNAKEKEIME 185
>gi|257055044|ref|YP_003132876.1| ribosome recycling factor [Saccharomonospora viridis DSM 43017]
gi|256584916|gb|ACU96049.1| ribosome recycling factor [Saccharomonospora viridis DSM 43017]
Length = 185
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ EL +RTGRA+P M I+VE G PLN LA V++ +++ I PYD
Sbjct: 13 MEKAVSFAKEELASVRTGRATPAMFSRIVVEYYGAPTPLNQLASVNIPEARMAIIKPYDG 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI S LG+NP DG + IP LT+E + M K+ E+ + SIR R
Sbjct: 73 SQLANIEKAIRESDLGVNPTNDGSIIRVVIPQLTEERRKEMVKIAKGKGEEARISIRGIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D++ R EKE+ LT +YV D++ K KE E+ E
Sbjct: 133 RKAKEELDRIAKDGEA-GEDEVARAEKELQNLTDRYVHQVDELVKNKEAELLE 184
>gi|251797408|ref|YP_003012139.1| ribosome recycling factor [Paenibacillus sp. JDR-2]
gi|247545034|gb|ACT02053.1| ribosome recycling factor [Paenibacillus sp. JDR-2]
Length = 184
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 103/171 (60%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI AL R+L LR GRA+P +LD + VE G P+ LA ++V DS+TL I P+D
Sbjct: 13 MEKAIGALKRDLATLRAGRATPALLDRVQVEYYGAPTPVAQLANINVPDSRTLFIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++ +E AI+ S LGL P DG + +P LT+E + K K E+ K +IR R
Sbjct: 73 SSIAAIEKAIMKSDLGLTPSNDGSAIRITLPPLTEERRSELVKTTKKFGEEAKVAIRNIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK +++ +D+ +R +++I + T +++ D + AKEKEI E
Sbjct: 133 RDANDDIKKLEKTTISEDESRRHQEDIQKATDRFIAEVDKVLVAKEKEIME 183
>gi|406670870|ref|ZP_11078115.1| ribosome recycling factor [Facklamia hominis CCUG 36813]
gi|405582386|gb|EKB56392.1| ribosome recycling factor [Facklamia hominis CCUG 36813]
Length = 185
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I A REL +R G A+ +LD + VE G PLN LA +++ + + L I+PYD
Sbjct: 13 MDKSIEAFQRELGSIRAGVANASILDRVSVEYYGAPTPLNQLASITIPEPRMLMISPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+LK++E I+ S +G+ P DG + IPALTKE + + KVV K E+ K S+R R
Sbjct: 73 GSLKDIEKGILMSDVGITPNNDGDVIRLTIPALTKERREDLVKVVGKEQENAKISVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D KK + L +D +KR EK+I +LT D + K KE+EI
Sbjct: 133 RDAIDDCKKMEKNNELTEDDVKRYEKDIQKLTDNATDEIDRLAKVKEEEI 182
>gi|384564964|ref|ZP_10012068.1| ribosome recycling factor [Saccharomonospora glauca K62]
gi|384520818|gb|EIE98013.1| ribosome recycling factor [Saccharomonospora glauca K62]
Length = 185
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +RTGRA+P M I+VE G PLN LA +++ +++ + PYD
Sbjct: 13 MEKAVSFAKEDLASVRTGRATPAMFSRIVVEYYGAPTPLNQLASITIPEARMAVVKPYDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI S LG+NP DG + IP LT+E + M KV E+ + SIR R
Sbjct: 73 SQLATIEKAIRDSDLGVNPTNDGNIIRVVIPQLTEERRKEMVKVAKSKGEEARVSIRSVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D++ R EKE+ LT +YV D++ K KE E+ E
Sbjct: 133 RKAKEELDRIAKDGEA-GEDEVARAEKELQNLTDRYVHQVDELVKNKEAELLE 184
>gi|225570389|ref|ZP_03779414.1| hypothetical protein CLOHYLEM_06489 [Clostridium hylemonae DSM
15053]
gi|225160760|gb|EEG73379.1| hypothetical protein CLOHYLEM_06489 [Clostridium hylemonae DSM
15053]
Length = 183
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 103/169 (60%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I +L EL +R GRA+P +L+ I+V G P+ +A VSV +++ + I P++
Sbjct: 12 MNKTIASLEGELAAIRAGRANPNVLNKIMVNYYGTPTPIQQVANVSVPEARMIHIQPWEK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +KE+E AI++S LG+NP DG + A P LT+E + + K V K E+ K +IR R
Sbjct: 72 SMVKEIEKAIMTSDLGINPTNDGSAIRLAFPELTEERRKELAKDVKKKGENAKVAIRNIR 131
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +KK GS + +D++K LE E+ +LT K++K D +AK KE+
Sbjct: 132 RDGNDTLKKLKGSEVSEDEIKDLEDELQKLTDKFIKEVDKAVEAKSKEV 180
>gi|239631340|ref|ZP_04674371.1| ribosome recycling factor [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|301066628|ref|YP_003788651.1| ribosome recycling factor [Lactobacillus casei str. Zhang]
gi|417980862|ref|ZP_12621540.1| ribosome recycling factor [Lactobacillus casei 12A]
gi|417983599|ref|ZP_12624235.1| ribosome recycling factor [Lactobacillus casei 21/1]
gi|417989829|ref|ZP_12630328.1| ribosome recycling factor [Lactobacillus casei A2-362]
gi|417993096|ref|ZP_12633446.1| ribosome recycling factor [Lactobacillus casei CRF28]
gi|417996450|ref|ZP_12636729.1| ribosome recycling factor [Lactobacillus casei M36]
gi|417999317|ref|ZP_12639527.1| ribosome recycling factor [Lactobacillus casei T71499]
gi|418002256|ref|ZP_12642378.1| ribosome recycling factor [Lactobacillus casei UCD174]
gi|418008179|ref|ZP_12648047.1| ribosome recycling factor [Lactobacillus casei UW4]
gi|418011017|ref|ZP_12650787.1| ribosome recycling factor [Lactobacillus casei Lc-10]
gi|418014518|ref|ZP_12654114.1| ribosome recycling factor [Lactobacillus casei Lpc-37]
gi|239525805|gb|EEQ64806.1| ribosome recycling factor [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|300439035|gb|ADK18801.1| Ribosome recycling factor [Lactobacillus casei str. Zhang]
gi|410524203|gb|EKP99119.1| ribosome recycling factor [Lactobacillus casei 12A]
gi|410527868|gb|EKQ02730.1| ribosome recycling factor [Lactobacillus casei 21/1]
gi|410532008|gb|EKQ06719.1| ribosome recycling factor [Lactobacillus casei CRF28]
gi|410535296|gb|EKQ09921.1| ribosome recycling factor [Lactobacillus casei M36]
gi|410537078|gb|EKQ11658.1| ribosome recycling factor [Lactobacillus casei A2-362]
gi|410539337|gb|EKQ13870.1| ribosome recycling factor [Lactobacillus casei T71499]
gi|410544684|gb|EKQ19005.1| ribosome recycling factor [Lactobacillus casei UCD174]
gi|410547123|gb|EKQ21361.1| ribosome recycling factor [Lactobacillus casei UW4]
gi|410553167|gb|EKQ27173.1| ribosome recycling factor [Lactobacillus casei Lc-10]
gi|410553566|gb|EKQ27568.1| ribosome recycling factor [Lactobacillus casei Lpc-37]
Length = 185
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L REL +R GRA+ +L+ I VE G PLN +A +++ + + L ++PYD ++LK +
Sbjct: 19 SLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIPEPRVLQVSPYDKSSLKNI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+NP DG + IP LT E + + K V K SE K ++R R++ LD
Sbjct: 79 ETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKYSESAKIAVRNIRREGLDK 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K+ + +D + RLEK++ + T K D+I AKEKEI E
Sbjct: 139 LKRQEKDGDITEDDLHRLEKDMQKATDDATKRIDEIAAAKEKEITE 184
>gi|399888416|ref|ZP_10774293.1| ribosome recycling factor [Clostridium arbusti SL206]
Length = 185
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I L +ELT ++ GRA+P MLD I VE G LN +A VS + + L I PYD
Sbjct: 13 MSKTISVLKKELTSMKAGRANPAMLDRIEVEYYGTATALNQVANVSAPEPRILLIQPYDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+K++E AI+ S LGLNP DG + IP LT+E + + K V K+ ED K ++R R
Sbjct: 73 TAIKDIERAILMSNLGLNPSNDGSAIRLVIPELTEETRKNIVKSVKKSGEDAKVAVRSIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K K ++L +D+ K+ E + + T +Y+K D I AKEK++
Sbjct: 133 RDANDKIKLLKKDNTLTEDETKKYEDNVQKKTDEYIKDIDKIVDAKEKDL 182
>gi|220909994|ref|YP_002485305.1| ribosome recycling factor [Cyanothece sp. PCC 7425]
gi|254809507|sp|B8HL79.1|RRF_CYAP4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|219866605|gb|ACL46944.1| ribosome recycling factor [Cyanothece sp. PCC 7425]
Length = 182
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ A R +RTGRA+ +LD + VE G + PL LA +S DS T++I P+D
Sbjct: 10 MQKSVEATQRAFNTIRTGRANTSLLDRVTVEYYGAETPLRSLANISTPDSSTIAIQPFDR 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N+L +E AI S LGL P DG + IP LT + + + K +K +E+ K SIR R
Sbjct: 70 NSLNLIEKAISMSDLGLTPNNDGTVIRLNIPPLTSDRRKELVKTASKLAEEGKVSIRNVR 129
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
+ A+D +KK G + L +D++K L+ +I +LT KY+ D + KEK+I+
Sbjct: 130 RDAVDSVKKQGKAGELSEDEVKDLQDKIQKLTDKYIAKVDGLLAEKEKDIS 180
>gi|187778975|ref|ZP_02995448.1| hypothetical protein CLOSPO_02570 [Clostridium sporogenes ATCC
15579]
gi|424827570|ref|ZP_18252357.1| ribosome recycling factor [Clostridium sporogenes PA 3679]
gi|187772600|gb|EDU36402.1| ribosome recycling factor [Clostridium sporogenes ATCC 15579]
gi|365980010|gb|EHN16051.1| ribosome recycling factor [Clostridium sporogenes PA 3679]
Length = 184
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 97/169 (57%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M IVAL REL ++ GRA+P MLD I E G PLN L +SV +++ L I P+D
Sbjct: 13 MGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LGLNP DG + IP LT+E + + K V KT E+ K +IR R
Sbjct: 73 SALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +K + +D +K+ E +I + T KY+K D I KEKEI
Sbjct: 133 RDCNDDVKNLKKDDVSEDDIKKAEDDIQKKTDKYIKEVDSIISVKEKEI 181
>gi|120434469|ref|YP_860171.1| ribosome recycling factor [Gramella forsetii KT0803]
gi|166230790|sp|A0LXJ3.1|RRF_GRAFK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|117576619|emb|CAL65088.1| ribosome recycling factor [Gramella forsetii KT0803]
Length = 183
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI L ++L+ +R G+ASP ML ++VE G + PL +A V+ D++TLSI P++
Sbjct: 15 MEKAITHLKKQLSNIRAGKASPSMLGSVMVEYYGSQTPLQQVANVNTPDARTLSIQPFEK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E I+ + LG NP +G+ +I +P LT+E + + K +ED K +R R
Sbjct: 75 SLITEIERGIMLANLGFNPMNNGESVIINVPPLTEERRKQLSKQAKAEAEDAKVGVRNDR 134
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++A+ +KKA + +D +K E E+ ELT Y++ D I KE EI
Sbjct: 135 KQAMQELKKA--DISEDLLKSSEDEVQELTNTYIERIDKILTVKETEI 180
>gi|229092864|ref|ZP_04223998.1| Ribosome-recycling factor [Bacillus cereus Rock3-42]
gi|228690486|gb|EEL44269.1| Ribosome-recycling factor [Bacillus cereus Rock3-42]
Length = 185
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRAS +LD + V+ G P+ LA ++V +++ L I PYD
Sbjct: 13 MEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI+ + LGLNP DG + A PALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D ++ ++I + T KY+ D+I K KEKEI E
Sbjct: 133 RDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184
>gi|300858728|ref|YP_003783711.1| ribosome-recycling factor [Corynebacterium pseudotuberculosis
FRC41]
gi|337291025|ref|YP_004630046.1| ribosome-recycling factor [Corynebacterium ulcerans BR-AD22]
gi|375288911|ref|YP_005123452.1| ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
3/99-5]
gi|383314488|ref|YP_005375343.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
P54B96]
gi|384504905|ref|YP_005681575.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
1002]
gi|384507001|ref|YP_005683670.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
C231]
gi|384509089|ref|YP_005685757.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
I19]
gi|384511180|ref|YP_005690758.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
PAT10]
gi|384515937|ref|YP_005711029.1| ribosome-recycling factor [Corynebacterium ulcerans 809]
gi|385807790|ref|YP_005844187.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
267]
gi|386740642|ref|YP_006213822.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
31]
gi|387136830|ref|YP_005692810.1| ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
42/02-A]
gi|392400840|ref|YP_006437440.1| ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
Cp162]
gi|397654286|ref|YP_006494969.1| ribosome recycling factor [Corynebacterium ulcerans 0102]
gi|300686182|gb|ADK29104.1| ribosome-recycling factor [Corynebacterium pseudotuberculosis
FRC41]
gi|302206435|gb|ADL10777.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
C231]
gi|302330991|gb|ADL21185.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
1002]
gi|308276677|gb|ADO26576.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
I19]
gi|334697138|gb|AEG81935.1| ribosome-recycling factor [Corynebacterium ulcerans 809]
gi|334699331|gb|AEG84127.1| ribosome-recycling factor [Corynebacterium ulcerans BR-AD22]
gi|341825119|gb|AEK92640.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
PAT10]
gi|348607275|gb|AEP70548.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
42/02-A]
gi|371576200|gb|AEX39803.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
3/99-5]
gi|380869989|gb|AFF22463.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
P54B96]
gi|383805183|gb|AFH52262.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
267]
gi|384477336|gb|AFH91132.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
31]
gi|390531918|gb|AFM07647.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
Cp162]
gi|393403242|dbj|BAM27734.1| ribosome recycling factor [Corynebacterium ulcerans 0102]
Length = 185
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 11 ELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAI 70
+L +RTGRA+P M + +I + GV P+ +A +SV +++ L I PY+ + + E+E AI
Sbjct: 23 DLVNIRTGRANPAMFNGVIADYYGVPTPITQMATISVPEARMLLIKPYEMSMMGEIENAI 82
Query: 71 VSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK- 129
+S LG+NP DGQ L +P LT+E + M KV ED K +IR R+K +D +KK
Sbjct: 83 RNSDLGVNPTNDGQVLRVTVPQLTEERRKEMVKVAKSKGEDGKIAIRNVRRKGMDQLKKI 142
Query: 130 -AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+D+++ EKE+D++T KYV D++ KE E+ E
Sbjct: 143 QKDGDAGEDEVQAAEKELDKITAKYVAQVDEVVSKKEAELME 184
>gi|75764985|ref|ZP_00744310.1| Ribosome Recycling Factor (RRF) [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218898977|ref|YP_002447388.1| ribosome recycling factor [Bacillus cereus G9842]
gi|228902327|ref|ZP_04066484.1| Ribosome-recycling factor [Bacillus thuringiensis IBL 4222]
gi|228909648|ref|ZP_04073471.1| Ribosome-recycling factor [Bacillus thuringiensis IBL 200]
gi|228940912|ref|ZP_04103471.1| Ribosome-recycling factor [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228973841|ref|ZP_04134417.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980430|ref|ZP_04140740.1| Ribosome-recycling factor [Bacillus thuringiensis Bt407]
gi|229031454|ref|ZP_04187454.1| Ribosome-recycling factor [Bacillus cereus AH1271]
gi|229098293|ref|ZP_04229240.1| Ribosome-recycling factor [Bacillus cereus Rock3-29]
gi|229104386|ref|ZP_04235055.1| Ribosome-recycling factor [Bacillus cereus Rock3-28]
gi|229117310|ref|ZP_04246688.1| Ribosome-recycling factor [Bacillus cereus Rock1-3]
gi|384187883|ref|YP_005573779.1| ribosome recycling factor [Bacillus thuringiensis serovar chinensis
CT-43]
gi|402558850|ref|YP_006601574.1| ribosome recycling factor [Bacillus thuringiensis HD-771]
gi|407706283|ref|YP_006829868.1| hypothetical protein MC28_3047 [Bacillus thuringiensis MC28]
gi|410676197|ref|YP_006928568.1| ribosome-recycling factor Frr [Bacillus thuringiensis Bt407]
gi|423359140|ref|ZP_17336643.1| ribosome-recycling factor [Bacillus cereus VD022]
gi|423378337|ref|ZP_17355621.1| ribosome-recycling factor [Bacillus cereus BAG1O-2]
gi|423385327|ref|ZP_17362583.1| ribosome-recycling factor [Bacillus cereus BAG1X1-2]
gi|423395875|ref|ZP_17373076.1| ribosome-recycling factor [Bacillus cereus BAG2X1-1]
gi|423406751|ref|ZP_17383900.1| ribosome-recycling factor [Bacillus cereus BAG2X1-3]
gi|423418269|ref|ZP_17395358.1| ribosome-recycling factor [Bacillus cereus BAG3X2-1]
gi|423441445|ref|ZP_17418351.1| ribosome-recycling factor [Bacillus cereus BAG4X2-1]
gi|423448329|ref|ZP_17425208.1| ribosome-recycling factor [Bacillus cereus BAG5O-1]
gi|423464519|ref|ZP_17441287.1| ribosome-recycling factor [Bacillus cereus BAG6O-1]
gi|423528315|ref|ZP_17504760.1| ribosome-recycling factor [Bacillus cereus HuB1-1]
gi|423533861|ref|ZP_17510279.1| ribosome-recycling factor [Bacillus cereus HuB2-9]
gi|423540870|ref|ZP_17517261.1| ribosome-recycling factor [Bacillus cereus HuB4-10]
gi|423547108|ref|ZP_17523466.1| ribosome-recycling factor [Bacillus cereus HuB5-5]
gi|423561770|ref|ZP_17538046.1| ribosome-recycling factor [Bacillus cereus MSX-A1]
gi|423612041|ref|ZP_17587902.1| ribosome-recycling factor [Bacillus cereus VD107]
gi|423615915|ref|ZP_17591749.1| ribosome-recycling factor [Bacillus cereus VD115]
gi|423623100|ref|ZP_17598878.1| ribosome-recycling factor [Bacillus cereus VD148]
gi|434376927|ref|YP_006611571.1| ribosome recycling factor [Bacillus thuringiensis HD-789]
gi|452200263|ref|YP_007480344.1| Ribosome recycling factor [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|226703252|sp|B7IUI3.1|RRF_BACC2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|74487527|gb|EAO51418.1| Ribosome Recycling Factor (RRF) [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218541328|gb|ACK93722.1| ribosome recycling factor [Bacillus cereus G9842]
gi|228666210|gb|EEL21674.1| Ribosome-recycling factor [Bacillus cereus Rock1-3]
gi|228679084|gb|EEL33292.1| Ribosome-recycling factor [Bacillus cereus Rock3-28]
gi|228685191|gb|EEL39122.1| Ribosome-recycling factor [Bacillus cereus Rock3-29]
gi|228729743|gb|EEL80723.1| Ribosome-recycling factor [Bacillus cereus AH1271]
gi|228779250|gb|EEM27507.1| Ribosome-recycling factor [Bacillus thuringiensis Bt407]
gi|228785866|gb|EEM33869.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228818748|gb|EEM64814.1| Ribosome-recycling factor [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228849937|gb|EEM94768.1| Ribosome-recycling factor [Bacillus thuringiensis IBL 200]
gi|228857296|gb|EEN01799.1| Ribosome-recycling factor [Bacillus thuringiensis IBL 4222]
gi|326941592|gb|AEA17488.1| ribosome recycling factor [Bacillus thuringiensis serovar chinensis
CT-43]
gi|401085012|gb|EJP93258.1| ribosome-recycling factor [Bacillus cereus VD022]
gi|401106542|gb|EJQ14503.1| ribosome-recycling factor [Bacillus cereus BAG3X2-1]
gi|401128923|gb|EJQ36606.1| ribosome-recycling factor [Bacillus cereus BAG5O-1]
gi|401172058|gb|EJQ79279.1| ribosome-recycling factor [Bacillus cereus HuB4-10]
gi|401178829|gb|EJQ86002.1| ribosome-recycling factor [Bacillus cereus HuB5-5]
gi|401202027|gb|EJR08892.1| ribosome-recycling factor [Bacillus cereus MSX-A1]
gi|401247048|gb|EJR53392.1| ribosome-recycling factor [Bacillus cereus VD107]
gi|401259873|gb|EJR66047.1| ribosome-recycling factor [Bacillus cereus VD148]
gi|401260452|gb|EJR66625.1| ribosome-recycling factor [Bacillus cereus VD115]
gi|401635383|gb|EJS53138.1| ribosome-recycling factor [Bacillus cereus BAG1X1-2]
gi|401636603|gb|EJS54357.1| ribosome-recycling factor [Bacillus cereus BAG1O-2]
gi|401653617|gb|EJS71161.1| ribosome-recycling factor [Bacillus cereus BAG2X1-1]
gi|401660041|gb|EJS77524.1| ribosome-recycling factor [Bacillus cereus BAG2X1-3]
gi|401787502|gb|AFQ13541.1| ribosome recycling factor [Bacillus thuringiensis HD-771]
gi|401875484|gb|AFQ27651.1| ribosome recycling factor [Bacillus thuringiensis HD-789]
gi|402418106|gb|EJV50406.1| ribosome-recycling factor [Bacillus cereus BAG4X2-1]
gi|402420786|gb|EJV53057.1| ribosome-recycling factor [Bacillus cereus BAG6O-1]
gi|402451978|gb|EJV83797.1| ribosome-recycling factor [Bacillus cereus HuB1-1]
gi|402464080|gb|EJV95780.1| ribosome-recycling factor [Bacillus cereus HuB2-9]
gi|407383968|gb|AFU14469.1| Ribosome Recycling Factor [Bacillus thuringiensis MC28]
gi|409175326|gb|AFV19631.1| ribosome-recycling factor Frr [Bacillus thuringiensis Bt407]
gi|452105656|gb|AGG02596.1| Ribosome recycling factor [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 185
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRAS +LD + V+ G P+ LA ++V +++ L I PYD
Sbjct: 13 MEKAVAAYSRELATVRAGRASSSVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI+ + LGLNP DG + A PALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D ++ ++I + T KY+ D+I K KEKEI E
Sbjct: 133 RDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184
>gi|329767058|ref|ZP_08258586.1| ribosome-recycling factor [Gemella haemolysans M341]
gi|328837783|gb|EGF87408.1| ribosome-recycling factor [Gemella haemolysans M341]
Length = 185
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI +L REL +R G+AS +LD + V+ GV P+N +A VSV + K L I+PY+
Sbjct: 13 MEKAIASLRRELASIRAGKASAAVLDRLTVDYYGVPTPINQVAGVSVPEPKMLVISPYEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L ++E I +S LGLNP DG + PALT+E + + K+V K SE K ++R R
Sbjct: 73 TLLGDIEKVIQASDLGLNPANDGTVIRIVFPALTEERRKELAKLVGKESEGAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D MKK S + +D +K +I ++T K++ D + K K+ E+
Sbjct: 133 RDAMDSMKKLEKSSQITEDDLKGYSDDIQKVTDKFIAEIDKVTKEKQDEL 182
>gi|269926622|ref|YP_003323245.1| ribosome recycling factor [Thermobaculum terrenum ATCC BAA-798]
gi|269790282|gb|ACZ42423.1| ribosome recycling factor [Thermobaculum terrenum ATCC BAA-798]
Length = 185
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 110/170 (64%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I L ++L +R+GRA+PG+++HI VE GV PL LA +SV + + ++I P+DP
Sbjct: 13 MRHSIDVLKKDLANIRSGRATPGLVEHIEVEYYGVPTPLIQLASISVPEPRMIAITPWDP 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N++ +E AI S LGLNP DG+ + +P LT+E +++ K+V + E+ + +IR R
Sbjct: 73 NSIGPIEKAIQKSELGLNPSNDGKIIRILVPPLTEERRRSLVKMVRQRVEEDRVAIRNIR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ ++ +K+ + +D+ +R ++++ +LT KY+K AD + + KE+EI
Sbjct: 133 RDVMNDIKQMQHEKMISEDEARRAQEKLQQLTDKYIKEADSLGEQKEQEI 182
>gi|21223982|ref|NP_629761.1| ribosome recycling factor [Streptomyces coelicolor A3(2)]
gi|289768824|ref|ZP_06528202.1| ribosome recycling factor [Streptomyces lividans TK24]
gi|6831642|sp|O86770.1|RRF_STRCO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|3319759|emb|CAA19925.1| ribosome recycling factor [Streptomyces coelicolor A3(2)]
gi|289699023|gb|EFD66452.1| ribosome recycling factor [Streptomyces lividans TK24]
Length = 185
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 95/173 (54%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ E G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVAEYYGAPTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT+E + KV ED K SIR R
Sbjct: 73 TALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTEERRREYIKVAKAKGEDAKVSIRSVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA +D M K G + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKDSIDKMVKDG-EVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|452950238|gb|EME55702.1| ribosome recycling factor [Amycolatopsis decaplanina DSM 44594]
Length = 185
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L+ +RTGRA PGM I+VE G PLN +A V+V +++ I PYD
Sbjct: 13 MEKAVSVAKEDLSSVRTGRAHPGMFSRIVVEYYGAPTPLNQMASVNVPEARMALIKPYDQ 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI S LG+NP DG + IP LT+E + M KV ED + SIR R
Sbjct: 73 TQLNAIEKAIRESDLGVNPSNDGNVIRIVIPQLTEERRKEMVKVAKAKGEDARVSIRSVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD +KK G + +D++ EKE+ LT Y D++ K KE E+ E
Sbjct: 133 RKAKEELDRIKKDGEA-GEDEVVHAEKELQNLTDTYTHKVDELVKHKEAELLE 184
>gi|379715608|ref|YP_005303945.1| ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
316]
gi|387140893|ref|YP_005696871.1| ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
1/06-A]
gi|355392684|gb|AER69349.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
1/06-A]
gi|377654314|gb|AFB72663.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
316]
Length = 185
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 11 ELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAI 70
+L +RTGRA+P M + +I + GV P+ +A +SV +++ L I PY+ + + E+E AI
Sbjct: 23 DLVNIRTGRANPAMFNGVIADYYGVPTPITQMAAISVPEARMLLIKPYEMSMMGEIENAI 82
Query: 71 VSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK- 129
+S LG+NP DGQ L +P LT+E + M KV ED K +IR R+K +D +KK
Sbjct: 83 RNSDLGVNPTNDGQVLRVTVPQLTEERRKEMVKVAKSKGEDGKIAIRNVRRKGMDQLKKI 142
Query: 130 -AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+D+++ EKE+D++T KYV D++ KE E+ E
Sbjct: 143 QKDGDAGEDEVQAAEKELDKITAKYVAQVDEVVSKKEAELME 184
>gi|375099453|ref|ZP_09745716.1| ribosome recycling factor [Saccharomonospora cyanea NA-134]
gi|374660185|gb|EHR60063.1| ribosome recycling factor [Saccharomonospora cyanea NA-134]
Length = 185
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +RTGRA+P M I+VE G PLN LA V++ +++ + PYD
Sbjct: 13 MEKAVSFAKEDLASVRTGRATPAMFSRIVVEYYGAPTPLNQLASVNIPEARMAVVKPYDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI S LG+NP DG + IP LT+E + M KV E+ + SIR R
Sbjct: 73 SQLAAIEKAIRDSDLGVNPTNDGNIIRVVIPQLTEERRKEMVKVAKSKGEEARVSIRGVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D++ R EKE+ LT +YV D++ K KE E+ E
Sbjct: 133 RKAKEELDRIAKDGEA-GEDEVARAEKELQNLTDRYVHQVDELVKHKEAELLE 184
>gi|239826646|ref|YP_002949270.1| ribosome recycling factor [Geobacillus sp. WCH70]
gi|259494544|sp|C5D9B8.1|RRF_GEOSW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|239806939|gb|ACS24004.1| ribosome recycling factor [Geobacillus sp. WCH70]
Length = 185
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A +REL +R GRA+P +L+ + V+ G+ P+ LA +SV +++ L I PYD
Sbjct: 13 MDKAVQAFTRELATIRAGRANPSLLEKVTVDYYGMPTPIIQLASISVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++E AI+SS LGL P DG + IP LT+E + + K+V K SED K ++R R
Sbjct: 73 SVIKDIEKAILSSDLGLTPSNDGSVIRITIPPLTEERRRELVKLVKKYSEDAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ ++ +LT ++ D I K KEKE+ E
Sbjct: 133 RDANDELKKLEKNGEITEDELRGYTDDVQKLTDDHIAKIDAITKEKEKEVME 184
>gi|421277501|ref|ZP_15728320.1| ribosome recycling factor [Streptococcus mitis SPAR10]
gi|395874753|gb|EJG85835.1| ribosome recycling factor [Streptococcus mitis SPAR10]
Length = 185
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRINVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEKEI + T VK DD+ KEKEI E
Sbjct: 139 AKKQEKAKEITEDELKTLEKEIQKATDDAVKHIDDMTANKEKEILE 184
>gi|354613711|ref|ZP_09031619.1| Ribosome-recycling factor [Saccharomonospora paurometabolica YIM
90007]
gi|353221950|gb|EHB86280.1| Ribosome-recycling factor [Saccharomonospora paurometabolica YIM
90007]
Length = 185
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +LT +RTGRASP M I VE GV PLN LA V++ +++ I PYD
Sbjct: 13 MEKAVSVAKEDLTSVRTGRASPSMFARIHVEYYGVPTPLNQLASVNIPEARMAVIKPYDT 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI S LG+NP DG + IP LT+E + M KV E+ K SIR R
Sbjct: 73 SQLGAVERAIRDSDLGVNPSNDGTVIRVVIPQLTEERRKEMVKVAKSKGEEGKISIRSVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D + R EKE+ LT KYV +++ K KE E+ E
Sbjct: 133 RKAKEELDRIAKDGEA-GEDDVARAEKELQNLTDKYVHQVEELVKHKESELLE 184
>gi|383649240|ref|ZP_09959646.1| ribosome recycling factor [Streptomyces chartreusis NRRL 12338]
Length = 185
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 94/172 (54%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ E G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVAEYYGAPTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV ED K SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKSKGEDAKVSIRSVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKDAIDKLIKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|450036172|ref|ZP_21835389.1| ribosome recycling factor [Streptococcus mutans M21]
gi|450111542|ref|ZP_21862769.1| ribosome recycling factor [Streptococcus mutans SM6]
gi|449194558|gb|EMB95912.1| ribosome recycling factor [Streptococcus mutans M21]
gi|449223789|gb|EMC23460.1| ribosome recycling factor [Streptococcus mutans SM6]
Length = 185
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
E + +L+RE +R GRA+ +LD I VE GV PLN LA ++V +++ L ++P+D
Sbjct: 13 FEQSHQSLAREFGSIRAGRANASLLDRIEVEYYGVPTPLNQLASITVPEARVLLVSPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK++E AI +S +G+NP DG + IPALT+E + + K V K E+ K +IR R
Sbjct: 73 SSLKDIEHAINASDIGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKVAIRNIR 132
Query: 121 QKALDMMKKAG--SSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D KK + +D++K LEK+I ++T + VK D + KEKE+ E
Sbjct: 133 RDAMDEAKKQEKIKEITEDELKSLEKDIQKVTDEAVKHIDSMTTNKEKELLE 184
>gi|312866459|ref|ZP_07726677.1| ribosome recycling factor [Streptococcus downei F0415]
gi|311098153|gb|EFQ56379.1| ribosome recycling factor [Streptococcus downei F0415]
Length = 185
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
AL RE + +R GRA+ +LD I V+ G PLN LA ++V +++ L I+P+D N++KE+
Sbjct: 19 ALGREFSAIRAGRANASLLDRIEVDYYGAPTPLNQLASITVPEARVLLISPFDKNSIKEI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI S LG+NP DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERAINESDLGINPANDGSVIRLVIPALTEETRKDLAKEVKKLGENAKVAIRNIRRDAMDD 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KK + +D++K LEK+I + T VK D + KEKE+
Sbjct: 139 AKKQEKDKEITEDELKSLEKDIQKATDDAVKKIDSMTNEKEKEL 182
>gi|255524238|ref|ZP_05391197.1| ribosome recycling factor [Clostridium carboxidivorans P7]
gi|296185359|ref|ZP_06853769.1| ribosome recycling factor [Clostridium carboxidivorans P7]
gi|255512063|gb|EET88344.1| ribosome recycling factor [Clostridium carboxidivorans P7]
gi|296050193|gb|EFG89617.1| ribosome recycling factor [Clostridium carboxidivorans P7]
Length = 185
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M + AL REL ++ GRA+P MLD I E G P+N LA +SV + + L+I P+D
Sbjct: 13 MNKTVEALKRELASMKAGRANPAMLDKIEAEYYGTMTPINQLANISVPEPRVLAIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ K +E AI+ S LG+NP DG+ + I LT+E + + K + K ED K ++R R
Sbjct: 73 GSFKAIEKAILKSDLGINPSSDGEMIRLVIAELTEETRKNIVKNIKKDGEDSKVAVRSIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +K K S + +D++K+ E EI + T ++K D I +AKEKEI
Sbjct: 133 RDCNDKIKVLKKESDISEDEIKKAEDEIQKKTDAFIKQVDKIVEAKEKEI 182
>gi|300783895|ref|YP_003764186.1| ribosome recycling factor [Amycolatopsis mediterranei U32]
gi|399535780|ref|YP_006548442.1| ribosome recycling factor [Amycolatopsis mediterranei S699]
gi|299793409|gb|ADJ43784.1| ribosome recycling factor [Amycolatopsis mediterranei U32]
gi|398316550|gb|AFO75497.1| ribosome recycling factor [Amycolatopsis mediterranei S699]
Length = 187
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ EL +RTGRAS M I+VE G PLN LA V+V +++ I PYD
Sbjct: 15 MEKAVSVAKDELQSVRTGRASSAMFSRIVVEYYGSPTPLNQLASVNVPEARMALIKPYDQ 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI S LG+NP DGQ + IP LT+E + M KV ED + SIR R
Sbjct: 75 SQLNAIEKAIRESDLGVNPSNDGQVIRIVIPQLTEERRKEMVKVAKGKGEDARVSIRSIR 134
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D + R EKE+ LT YV D++ K KE E+ E
Sbjct: 135 RKAKDELDRIAKDGEA-GEDDVARAEKELQNLTDTYVHKVDELIKHKEAELLE 186
>gi|359462053|ref|ZP_09250616.1| ribosome recycling factor [Acaryochloris sp. CCMEE 5410]
Length = 182
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I A+ R L +RTGRA+ +LD I VE G + PL LA +S D+ T++I P+DP
Sbjct: 10 MQKSIEAMKRSLNTIRTGRANASLLDRITVEYYGTETPLRSLATISTPDASTITIQPFDP 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L ++E +I S +GL P DG + IP LT+E + K+ K +E+ K +IR R
Sbjct: 70 SSLTDIERSISLSDVGLVPNNDGSAIRLNIPPLTEERRKDFVKMAGKIAEEGKVAIRNIR 129
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +K G S + +D+ K L+ +I LT KY D I KE EI
Sbjct: 130 RDAIDTARKQGKSGDISEDESKDLQDKIQGLTDKYTGQIDKILAEKETEI 179
>gi|359778924|ref|ZP_09282180.1| ribosome-recycling factor [Arthrobacter globiformis NBRC 12137]
gi|359303791|dbj|GAB16009.1| ribosome-recycling factor [Arthrobacter globiformis NBRC 12137]
Length = 185
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ + +RTGRA+PG+ + ++VE G PL LA +V D++T+ I PYD
Sbjct: 13 MDKAVEVAKEDFASIRTGRATPGLYNKVMVEYYGTPTPLQQLASFAVPDARTILITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+++E A+ S +G NP DG + IP LTKE + K+V ED K SIR R
Sbjct: 73 TALRDIERALSDSEVGANPSNDGNVIRITIPELTKERRKEYVKIVKSKGEDAKVSIRNIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D+ R EKE+D +TK++V D++ K KE E+ E
Sbjct: 133 RKAKETLDRLVKDGEA-GEDEGARGEKELDVITKQHVDGIDELLKRKEAELLE 184
>gi|319939517|ref|ZP_08013877.1| ribosome-recycling factor [Streptococcus anginosus 1_2_62CV]
gi|319811503|gb|EFW07798.1| ribosome-recycling factor [Streptococcus anginosus 1_2_62CV]
Length = 185
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 106/166 (63%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D +++K++
Sbjct: 19 SLAREFGSIRAGRANASLLDRISVEYYGVETPLNQIASITIPEARVLLVTPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPASDGTVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T + VK DD+ +KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDEAVKHIDDMTASKEKELIE 184
>gi|329850619|ref|ZP_08265464.1| ribosome recycling factor [Asticcacaulis biprosthecum C19]
gi|328840934|gb|EGF90505.1| ribosome recycling factor [Asticcacaulis biprosthecum C19]
Length = 185
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+VAL + + LRTGRAS +LD ++V+ G MPLN A VSV +++ +S++ +D
Sbjct: 13 MDKAVVALKEDYSGLRTGRASASLLDQVVVDAYGSTMPLNACAAVSVPEARMISVSVWDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+E AI ++ LGLNP DGQ L IP LT+E + + K+ K +E + ++R R
Sbjct: 73 GLTVSVEKAIRNAGLGLNPITDGQTLRIPIPPLTEERRKELVKIAGKYAETQRVAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++A+D +KKA S + +D+ K+ EI T +K D++ KAKE EI
Sbjct: 133 REAMDDLKKAEKASDISEDEEKKGGTEIQGFTDSAIKRIDEVLKAKEAEI 182
>gi|225018404|ref|ZP_03707596.1| hypothetical protein CLOSTMETH_02351 [Clostridium methylpentosum
DSM 5476]
gi|224948822|gb|EEG30031.1| hypothetical protein CLOSTMETH_02351 [Clostridium methylpentosum
DSM 5476]
Length = 184
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M + L E T +R GRA+P +LD I+V+ G +N +A VSV +++ L I+P+D
Sbjct: 12 MHKTVERLEHEYTTIRAGRANPNVLDKILVDYYGTPTQINQMAAVSVSEARILVISPWDA 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+LK +E AI +S LG+NP DG+ + A P LT+E + + K V K ED K ++R R
Sbjct: 72 TSLKAIEKAIQASDLGINPTNDGKVIRIAFPQLTEERRKEIVKEVHKMREDAKVAVRNIR 131
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D K K S+ +D++K EK++ + K+ K D++ KEKEI E
Sbjct: 132 RDAMDKFKAIKKEGSVSEDEIKDGEKKLQNMVDKFCKEIDNVAAGKEKEIME 183
>gi|24380004|ref|NP_721959.1| ribosome recycling factor [Streptococcus mutans UA159]
gi|290580017|ref|YP_003484409.1| ribosome recycling factor [Streptococcus mutans NN2025]
gi|387785688|ref|YP_006250784.1| ribosome recycling factor [Streptococcus mutans LJ23]
gi|397650224|ref|YP_006490751.1| ribosome recycling factor [Streptococcus mutans GS-5]
gi|449865320|ref|ZP_21778910.1| ribosome recycling factor [Streptococcus mutans U2B]
gi|449871758|ref|ZP_21781259.1| ribosome recycling factor [Streptococcus mutans 8ID3]
gi|449877293|ref|ZP_21783189.1| ribosome recycling factor [Streptococcus mutans S1B]
gi|449883270|ref|ZP_21785047.1| ribosome recycling factor [Streptococcus mutans SA38]
gi|449885627|ref|ZP_21785696.1| ribosome recycling factor [Streptococcus mutans SA41]
gi|449894266|ref|ZP_21789142.1| ribosome recycling factor [Streptococcus mutans SF12]
gi|449896759|ref|ZP_21789919.1| ribosome recycling factor [Streptococcus mutans R221]
gi|449902396|ref|ZP_21791545.1| ribosome recycling factor [Streptococcus mutans M230]
gi|449910024|ref|ZP_21794487.1| ribosome recycling factor [Streptococcus mutans OMZ175]
gi|449916549|ref|ZP_21796922.1| ribosome recycling factor [Streptococcus mutans 15JP3]
gi|449919886|ref|ZP_21798199.1| ribosome recycling factor [Streptococcus mutans 1SM1]
gi|449926831|ref|ZP_21800944.1| ribosome recycling factor [Streptococcus mutans 4SM1]
gi|449929266|ref|ZP_21801496.1| ribosome recycling factor [Streptococcus mutans 3SN1]
gi|449935831|ref|ZP_21803646.1| ribosome recycling factor [Streptococcus mutans 2ST1]
gi|449941860|ref|ZP_21805724.1| ribosome recycling factor [Streptococcus mutans 11A1]
gi|449951157|ref|ZP_21808538.1| ribosome recycling factor [Streptococcus mutans 11SSST2]
gi|449953339|ref|ZP_21808966.1| ribosome recycling factor [Streptococcus mutans 4VF1]
gi|449966404|ref|ZP_21812350.1| ribosome recycling factor [Streptococcus mutans 15VF2]
gi|449972131|ref|ZP_21814676.1| ribosome recycling factor [Streptococcus mutans 2VS1]
gi|449975755|ref|ZP_21815971.1| ribosome recycling factor [Streptococcus mutans 11VS1]
gi|449979692|ref|ZP_21816839.1| ribosome recycling factor [Streptococcus mutans 5SM3]
gi|449984565|ref|ZP_21819140.1| ribosome recycling factor [Streptococcus mutans NFSM2]
gi|449991701|ref|ZP_21822022.1| ribosome recycling factor [Streptococcus mutans NVAB]
gi|449994618|ref|ZP_21822611.1| ribosome recycling factor [Streptococcus mutans A9]
gi|450001521|ref|ZP_21825703.1| ribosome recycling factor [Streptococcus mutans N29]
gi|450005295|ref|ZP_21826596.1| ribosome recycling factor [Streptococcus mutans NMT4863]
gi|450010778|ref|ZP_21828786.1| ribosome recycling factor [Streptococcus mutans A19]
gi|450023892|ref|ZP_21830909.1| ribosome recycling factor [Streptococcus mutans U138]
gi|450030148|ref|ZP_21833090.1| ribosome recycling factor [Streptococcus mutans G123]
gi|450039287|ref|ZP_21836166.1| ribosome recycling factor [Streptococcus mutans T4]
gi|450050380|ref|ZP_21840248.1| ribosome recycling factor [Streptococcus mutans NFSM1]
gi|450056419|ref|ZP_21842036.1| ribosome recycling factor [Streptococcus mutans NLML4]
gi|450062947|ref|ZP_21844668.1| ribosome recycling factor [Streptococcus mutans NLML5]
gi|450067488|ref|ZP_21846675.1| ribosome recycling factor [Streptococcus mutans NLML9]
gi|450071117|ref|ZP_21847972.1| ribosome recycling factor [Streptococcus mutans M2A]
gi|450076171|ref|ZP_21849736.1| ribosome recycling factor [Streptococcus mutans N3209]
gi|450083566|ref|ZP_21852982.1| ribosome recycling factor [Streptococcus mutans N66]
gi|450086714|ref|ZP_21853847.1| ribosome recycling factor [Streptococcus mutans NV1996]
gi|450091426|ref|ZP_21855492.1| ribosome recycling factor [Streptococcus mutans W6]
gi|450097597|ref|ZP_21857551.1| ribosome recycling factor [Streptococcus mutans SF1]
gi|450105335|ref|ZP_21859847.1| ribosome recycling factor [Streptococcus mutans SF14]
gi|450114906|ref|ZP_21863597.1| ribosome recycling factor [Streptococcus mutans ST1]
gi|450119893|ref|ZP_21865352.1| ribosome recycling factor [Streptococcus mutans ST6]
gi|450127716|ref|ZP_21868692.1| ribosome recycling factor [Streptococcus mutans U2A]
gi|450132957|ref|ZP_21870402.1| ribosome recycling factor [Streptococcus mutans NLML8]
gi|450137478|ref|ZP_21871687.1| ribosome recycling factor [Streptococcus mutans NLML1]
gi|450144576|ref|ZP_21874097.1| ribosome recycling factor [Streptococcus mutans 1ID3]
gi|450150640|ref|ZP_21876675.1| ribosome recycling factor [Streptococcus mutans 14D]
gi|450154435|ref|ZP_21877723.1| ribosome recycling factor [Streptococcus mutans 21]
gi|450160530|ref|ZP_21880075.1| ribosome recycling factor [Streptococcus mutans 66-2A]
gi|450164792|ref|ZP_21881514.1| ribosome recycling factor [Streptococcus mutans B]
gi|450170118|ref|ZP_21883356.1| ribosome recycling factor [Streptococcus mutans SM4]
gi|450175201|ref|ZP_21885029.1| ribosome recycling factor [Streptococcus mutans SM1]
gi|450181972|ref|ZP_21888071.1| ribosome recycling factor [Streptococcus mutans 24]
gi|34924954|sp|Q8DSY2.1|RRF_STRMU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|24377992|gb|AAN59265.1|AE014993_9 putative ribosome recycling factor [Streptococcus mutans UA159]
gi|254996916|dbj|BAH87517.1| putative ribosome recycling factor [Streptococcus mutans NN2025]
gi|379132089|dbj|BAL68841.1| ribosome recycling factor [Streptococcus mutans LJ23]
gi|392603793|gb|AFM81957.1| ribosome recycling factor [Streptococcus mutans GS-5]
gi|449150419|gb|EMB54184.1| ribosome recycling factor [Streptococcus mutans 1ID3]
gi|449151638|gb|EMB55366.1| ribosome recycling factor [Streptococcus mutans 11A1]
gi|449152206|gb|EMB55918.1| ribosome recycling factor [Streptococcus mutans NLML8]
gi|449155096|gb|EMB58628.1| ribosome recycling factor [Streptococcus mutans 8ID3]
gi|449155147|gb|EMB58677.1| ribosome recycling factor [Streptococcus mutans 15JP3]
gi|449159077|gb|EMB62456.1| ribosome recycling factor [Streptococcus mutans 1SM1]
gi|449160226|gb|EMB63503.1| ribosome recycling factor [Streptococcus mutans 4SM1]
gi|449164733|gb|EMB67778.1| ribosome recycling factor [Streptococcus mutans 3SN1]
gi|449166181|gb|EMB69136.1| ribosome recycling factor [Streptococcus mutans 2ST1]
gi|449166514|gb|EMB69448.1| ribosome recycling factor [Streptococcus mutans 11SSST2]
gi|449170168|gb|EMB72900.1| ribosome recycling factor [Streptococcus mutans 15VF2]
gi|449171185|gb|EMB73860.1| ribosome recycling factor [Streptococcus mutans 2VS1]
gi|449172052|gb|EMB74693.1| ribosome recycling factor [Streptococcus mutans 4VF1]
gi|449176464|gb|EMB78810.1| ribosome recycling factor [Streptococcus mutans 11VS1]
gi|449177618|gb|EMB79910.1| ribosome recycling factor [Streptococcus mutans 5SM3]
gi|449180144|gb|EMB82320.1| ribosome recycling factor [Streptococcus mutans NFSM2]
gi|449180808|gb|EMB82946.1| ribosome recycling factor [Streptococcus mutans NVAB]
gi|449184486|gb|EMB86430.1| ribosome recycling factor [Streptococcus mutans N29]
gi|449185124|gb|EMB87026.1| ribosome recycling factor [Streptococcus mutans A9]
gi|449188713|gb|EMB90410.1| ribosome recycling factor [Streptococcus mutans NMT4863]
gi|449189977|gb|EMB91590.1| ribosome recycling factor [Streptococcus mutans A19]
gi|449192699|gb|EMB94107.1| ribosome recycling factor [Streptococcus mutans U138]
gi|449193277|gb|EMB94666.1| ribosome recycling factor [Streptococcus mutans G123]
gi|449200626|gb|EMC01650.1| ribosome recycling factor [Streptococcus mutans T4]
gi|449202733|gb|EMC03630.1| ribosome recycling factor [Streptococcus mutans NFSM1]
gi|449205214|gb|EMC05971.1| ribosome recycling factor [Streptococcus mutans NLML5]
gi|449206789|gb|EMC07482.1| ribosome recycling factor [Streptococcus mutans NLML4]
gi|449208047|gb|EMC08683.1| ribosome recycling factor [Streptococcus mutans NLML9]
gi|449212742|gb|EMC13094.1| ribosome recycling factor [Streptococcus mutans M2A]
gi|449212968|gb|EMC13316.1| ribosome recycling factor [Streptococcus mutans N3209]
gi|449212970|gb|EMC13317.1| ribosome recycling factor [Streptococcus mutans N66]
gi|449219155|gb|EMC19133.1| ribosome recycling factor [Streptococcus mutans NV1996]
gi|449219382|gb|EMC19351.1| ribosome recycling factor [Streptococcus mutans W6]
gi|449222561|gb|EMC22285.1| ribosome recycling factor [Streptococcus mutans SF1]
gi|449224936|gb|EMC24560.1| ribosome recycling factor [Streptococcus mutans SF14]
gi|449228587|gb|EMC27947.1| ribosome recycling factor [Streptococcus mutans ST1]
gi|449230336|gb|EMC29598.1| ribosome recycling factor [Streptococcus mutans U2A]
gi|449230891|gb|EMC30133.1| ribosome recycling factor [Streptococcus mutans ST6]
gi|449233269|gb|EMC32346.1| ribosome recycling factor [Streptococcus mutans 14D]
gi|449235259|gb|EMC34227.1| ribosome recycling factor [Streptococcus mutans NLML1]
gi|449237807|gb|EMC36611.1| ribosome recycling factor [Streptococcus mutans 21]
gi|449239905|gb|EMC38605.1| ribosome recycling factor [Streptococcus mutans 66-2A]
gi|449241332|gb|EMC39965.1| ribosome recycling factor [Streptococcus mutans B]
gi|449245414|gb|EMC43751.1| ribosome recycling factor [Streptococcus mutans 24]
gi|449246212|gb|EMC44523.1| ribosome recycling factor [Streptococcus mutans SM4]
gi|449247274|gb|EMC45559.1| ribosome recycling factor [Streptococcus mutans SM1]
gi|449250135|gb|EMC48214.1| ribosome recycling factor [Streptococcus mutans SA38]
gi|449251041|gb|EMC49072.1| ribosome recycling factor [Streptococcus mutans S1B]
gi|449255038|gb|EMC52917.1| ribosome recycling factor [Streptococcus mutans SA41]
gi|449255393|gb|EMC53248.1| ribosome recycling factor [Streptococcus mutans SF12]
gi|449260436|gb|EMC57936.1| ribosome recycling factor [Streptococcus mutans OMZ175]
gi|449261724|gb|EMC59190.1| ribosome recycling factor [Streptococcus mutans R221]
gi|449262794|gb|EMC60235.1| ribosome recycling factor [Streptococcus mutans M230]
gi|449264307|gb|EMC61652.1| ribosome recycling factor [Streptococcus mutans U2B]
Length = 185
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 105/166 (63%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV PLN LA ++V +++ L ++P+D ++LK++
Sbjct: 19 SLAREFGSIRAGRANASLLDRIEVEYYGVPTPLNQLASITVPEARVLLVSPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI +S +G+NP DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 EHAINASDIGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKAG--SSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T + VK D + KEKE+ E
Sbjct: 139 AKKQEKIKEITEDELKSLEKDIQKVTDEAVKHIDSMTANKEKELLE 184
>gi|392394589|ref|YP_006431191.1| ribosome recycling factor [Desulfitobacterium dehalogenans ATCC
51507]
gi|390525667|gb|AFM01398.1| ribosome recycling factor [Desulfitobacterium dehalogenans ATCC
51507]
Length = 185
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ AL RE + +R GRA+P MLD I VE G + P+N LA +SV + + L+I P+D
Sbjct: 13 MVKAVEALKREYSTIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLAIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L +E AI+ S LGLNP DG + IP LT E + K V K +E+ + ++R R
Sbjct: 73 SSLPMIEKAILKSDLGLNPSSDGAVIRLIIPQLTAERRTEIVKTVKKKAEESRVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D++KR + ++ ++T K+VK D I KEKEI E
Sbjct: 133 RDCNDDLKKLEKDHTASEDEVKRAQDDVQKMTDKFVKEIDRIMGIKEKEIME 184
>gi|452750964|ref|ZP_21950711.1| Ribosome recycling factor [alpha proteobacterium JLT2015]
gi|451962158|gb|EMD84567.1| Ribosome recycling factor [alpha proteobacterium JLT2015]
Length = 186
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ AL +L+ LRTGRAS +LD + VE G KMPLN +A V+ + + LS+N +D
Sbjct: 14 MAGAVEALKGDLSGLRTGRASTVLLDPVQVEVYGAKMPLNQVATVTAPEPRLLSVNVWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++ AI S+ LGLNP VDGQ L IP +T+E + + K+ ++ SE K ++R R
Sbjct: 74 SNVNAVDKAIRSAGLGLNPIVDGQTLRLPIPDMTEERRRELAKLASQYSEKAKVAVRNVR 133
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ ++ +K A + +D KR E E+ ++T + DD+ AKEKEI
Sbjct: 134 RDGMESLKTAEKKGEIGQDDQKRGEAEVQKMTDARISEIDDVMAAKEKEI 183
>gi|433445999|ref|ZP_20410130.1| ribosome recycling factor [Anoxybacillus flavithermus TNO-09.006]
gi|432000744|gb|ELK21636.1| ribosome recycling factor [Anoxybacillus flavithermus TNO-09.006]
Length = 183
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A SREL +R GRA+P +L+ I V+ G+ P+ LA + V +++ L I PYD
Sbjct: 11 MDKAVQAFSRELATIRAGRANPALLEKITVDYYGMPTPIIQLASIQVPEARLLVIQPYDK 70
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ LKE+E AI++S LGL P DG + +IP LT+E + + K+V K +E+ K ++R R
Sbjct: 71 SVLKEIEKAILASDLGLTPSNDGSVIRISIPPLTEERRRELVKLVKKYAEEAKVAVRNIR 130
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ ++I +LT ++ D I K KEKE+ E
Sbjct: 131 RDANDELKKLEKNGEITEDELRGYTEDIQKLTDDHIAKIDAITKEKEKEVME 182
>gi|374851803|dbj|BAL54752.1| ribosome recycling factor [uncultured Chloroflexi bacterium]
Length = 185
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 110/172 (63%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L +L +RTGRASP +++ I VE GV PL LA ++V + ++L I P+DP
Sbjct: 13 MKQAIQVLVDDLAGIRTGRASPALVEKIPVEYYGVPTPLMQLASITVPEPRSLLIKPFDP 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ LK +E AI+SS LGL P DG+ + +P LT+E + + K+V E+ + +IR R
Sbjct: 73 SALKAIEKAILSSNLGLPPNNDGKAIRLNLPPLTEERRRELVKLVHARLEEARVAIRNVR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++AL+ M++A + +D+MKR E+E+ +LT +Y++ + + + KE EI E
Sbjct: 133 REALNDMREAEKEKLISEDEMKRGEEELQKLTDRYIEEVNRLGEKKEAEIME 184
>gi|431794501|ref|YP_007221406.1| ribosome recycling factor [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430784727|gb|AGA70010.1| ribosome recycling factor [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 185
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L RE T +R GRA+P MLD I VE G + P+N LA +SV + + L I P+D +L +
Sbjct: 19 SLKREYTTIRAGRANPNMLDRISVEYYGTQTPVNQLANISVPEPRILVIQPWDKTSLPMI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI+ S LGLNP DG + IP LT E + K V K +E+ + ++R R+ D
Sbjct: 79 EKAILKSDLGLNPSSDGTVIRLIIPQLTAERRTEIVKTVKKKAEEARVAVRNIRRDGNDS 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KK + +D++KR + ++ ++T K++K D I AKEKEI E
Sbjct: 139 LKKVEKDHAASEDEVKRAQDDVQKMTDKHIKEIDRIMDAKEKEIME 184
>gi|418962549|ref|ZP_13514405.1| ribosome recycling factor [Streptococcus anginosus subsp. whileyi
CCUG 39159]
gi|383345338|gb|EID23464.1| ribosome recycling factor [Streptococcus anginosus subsp. whileyi
CCUG 39159]
Length = 185
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 106/166 (63%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D +++K++
Sbjct: 19 SLAREFGSIRAGRANASLLDRISVEYYGVETPLNQIASITIPEARVLLVTPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPASDGTVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T + VK DD+ +KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDEAVKHIDDMTASKEKELIE 184
>gi|384147136|ref|YP_005529952.1| ribosome recycling factor [Amycolatopsis mediterranei S699]
gi|340525290|gb|AEK40495.1| ribosome recycling factor [Amycolatopsis mediterranei S699]
Length = 185
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ EL +RTGRAS M I+VE G PLN LA V+V +++ I PYD
Sbjct: 13 MEKAVSVAKDELQSVRTGRASSAMFSRIVVEYYGSPTPLNQLASVNVPEARMALIKPYDQ 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI S LG+NP DGQ + IP LT+E + M KV ED + SIR R
Sbjct: 73 SQLNAIEKAIRESDLGVNPSNDGQVIRIVIPQLTEERRKEMVKVAKGKGEDARVSIRSIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D + R EKE+ LT YV D++ K KE E+ E
Sbjct: 133 RKAKDELDRIAKDGEA-GEDDVARAEKELQNLTDTYVHKVDELIKHKEAELLE 184
>gi|228998600|ref|ZP_04158187.1| Ribosome-recycling factor [Bacillus mycoides Rock3-17]
gi|229006100|ref|ZP_04163788.1| Ribosome-recycling factor [Bacillus mycoides Rock1-4]
gi|228755176|gb|EEM04533.1| Ribosome-recycling factor [Bacillus mycoides Rock1-4]
gi|228761068|gb|EEM10027.1| Ribosome-recycling factor [Bacillus mycoides Rock3-17]
Length = 185
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRAS LD + V+ G P+ LA ++V +++ L I PYD
Sbjct: 13 MEKAVAAYSRELASVRAGRASASALDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI+ + LGLNP DG + A PALT+E + + K V K +E+ K ++R R
Sbjct: 73 TSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRRDLVKTVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D ++ ++I + T KY+ D+I K KEKEI E
Sbjct: 133 RDANDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184
>gi|296110369|ref|YP_003620750.1| ribosome recycling factor [Leuconostoc kimchii IMSNU 11154]
gi|339490477|ref|YP_004704982.1| ribosome recycling factor [Leuconostoc sp. C2]
gi|295831900|gb|ADG39781.1| ribosome recycling factor [Leuconostoc kimchii IMSNU 11154]
gi|338852149|gb|AEJ30359.1| ribosome recycling factor [Leuconostoc sp. C2]
Length = 181
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL REL +RTGRA+P +LD I VE G PLN +A +SV +++ L I P+D
Sbjct: 12 MQGAQDALQRELGSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEARILMITPFDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+E+ AI S LGLNP DG + AIP +T+E + + K V +E K S+R R
Sbjct: 72 TVLEEIIRAINISDLGLNPASDGNIVRLAIPQMTEEGRKDLVKQVKAEAEKAKVSVRNVR 131
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK LP+D + E ++ +LT + +K+ D I KEKE+
Sbjct: 132 RDAMDSVKK-DKELPEDDARHAEDDVQKLTDENIKAIDTIASDKEKEL 178
>gi|357417810|ref|YP_004930830.1| ribosome recycling factor [Pseudoxanthomonas spadix BD-a59]
gi|355335388|gb|AER56789.1| ribosome recycling factor [Pseudoxanthomonas spadix BD-a59]
Length = 185
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 106/172 (61%), Gaps = 6/172 (3%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I +L +LTKLRTGRA+ ++DH+ V G MPL +A V V D+++L+I P++
Sbjct: 13 MNKSIESLRHDLTKLRTGRATTALVDHLKVNYYGSDMPLTQVASVVVSDARSLTITPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+ S LGL P G + IPALT+E + + KVV ED K +IR R
Sbjct: 73 QMVSAVEKAILGSDLGLTPNTAGTVIRINIPALTEERRRDLSKVVHANGEDAKVAIRNIR 132
Query: 121 ----QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q+ D++K+ + +D+++R E+EI ++T K +K D++ KAKE+E+
Sbjct: 133 RDANQQIKDLLKE--KEVTEDEVRRAEEEIQKITDKAIKDVDEVVKAKEQEL 182
>gi|410697298|gb|AFV76366.1| ribosome recycling factor [Thermus oshimai JL-2]
Length = 185
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ AL L LRTGRA+P +L H+ VE G +PLN +A V+ D++TL + +D
Sbjct: 14 MQKSLEALEHNLAGLRTGRANPALLLHLKVEYYGTHVPLNQIATVTAPDARTLVVQSWDQ 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LK +E AI S LGLNP G L IP LT+E + + + +E+ + +IR R
Sbjct: 74 NALKAIEKAIRDSDLGLNPANKGDALYINIPPLTEERRKELVRAARHYAEEGRIAIRNIR 133
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ALD +KK L +D+ KR E EI ++T +++ D + + KE EI
Sbjct: 134 REALDTLKKLAKELHLSEDETKRAEGEIQKITDEFIAKVDALAEKKEAEI 183
>gi|322390000|ref|ZP_08063539.1| ribosome recycling factor [Streptococcus parasanguinis ATCC 903]
gi|321143313|gb|EFX38752.1| ribosome recycling factor [Streptococcus parasanguinis ATCC 903]
Length = 185
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L RE +R GRA+ +LD I VE GV+ PLN LA +++ +++ L I P+D ++LK++
Sbjct: 19 SLGREFGTIRAGRANASLLDRIFVEYYGVETPLNQLASITIPEARVLLITPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E +I + LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 EHSINAFDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEKEI ++T VK D++ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKGLEKEIQKVTDDAVKHVDEMTAHKEKELME 184
>gi|15806522|ref|NP_295233.1| ribosome recycling factor [Deinococcus radiodurans R1]
gi|22001957|sp|Q9RU82.1|RRF_DEIRA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|6459273|gb|AAF11077.1|AE001995_2 ribosome recycling factor [Deinococcus radiodurans R1]
Length = 183
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI A L+ LRTGRA+PG+L I+V+ G +MP++ +A ++ D +TL I P+D
Sbjct: 15 MNKAIEAFENNLSVLRTGRANPGILKKIVVDYYGSQMPIDQVASITTPDPRTLVITPWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI S LGLNP G + ++P LT+E + + K +ED + ++R R
Sbjct: 75 GALNPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEDARIAVRNLR 134
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ ALD +KK L +D++KR E ++ ++T +YV + + + KE+EI
Sbjct: 135 KHALDEVKKV-EGLGEDEIKRGEADVQKITDEYVARVESVFQKKEQEI 181
>gi|148380389|ref|YP_001254930.1| ribosome recycling factor [Clostridium botulinum A str. ATCC 3502]
gi|153933414|ref|YP_001384607.1| ribosome recycling factor [Clostridium botulinum A str. ATCC 19397]
gi|153934708|ref|YP_001388123.1| ribosome recycling factor [Clostridium botulinum A str. Hall]
gi|166230778|sp|A7FPZ5.1|RRF_CLOB1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166230779|sp|A5I4K9.1|RRF_CLOBH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|148289873|emb|CAL83981.1| ribosome recycling factor [Clostridium botulinum A str. ATCC 3502]
gi|152929458|gb|ABS34958.1| ribosome recycling factor [Clostridium botulinum A str. ATCC 19397]
gi|152930622|gb|ABS36121.1| ribosome recycling factor [Clostridium botulinum A str. Hall]
Length = 184
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 97/169 (57%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M IVAL +EL ++ GRA+P MLD I E G PLN L +SV +++ L I P+D
Sbjct: 13 MGKTIVALKKELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI+ S LGLNP DG + IP LT+E + + K V KT E+ K +IR R
Sbjct: 73 GALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +K + +D +K+ E +I + T KY+K D I AKEKEI
Sbjct: 133 RDCNDDVKNLKKDDVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEI 181
>gi|32400999|gb|AAP80705.1| ribosome recycling factor [Griffithsia japonica]
Length = 230
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I ++ +RTGRASP +LD I V G PLN LA VSV + TL + PYD
Sbjct: 58 MQKTIDSVKSAFNSVRTGRASPSLLDRIQVNYYGADTPLNSLATVSVSGTSTLVVEPYDK 117
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E +++ S +GL P DG + +IP LTKE + K V +ED + +IR R
Sbjct: 118 SCISDIERSLMESDIGLTPNSDGSTIRLSIPQLTKERRSQLVKQVKSMAEDGRVAIRNIR 177
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK S L KD+ K L+ + +LT KYVK+ + + K KE++I
Sbjct: 178 RDAVDSIKKLEKKSELGKDESKTLQDRVQKLTDKYVKTIESVYKQKEEDI 227
>gi|149202144|ref|ZP_01879117.1| ribosome recycling factor [Roseovarius sp. TM1035]
gi|149144242|gb|EDM32273.1| ribosome recycling factor [Roseovarius sp. TM1035]
Length = 187
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 103/169 (60%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI AL E LRTGRAS ML+ I+V+ G K P+N + V+V + + +++N +D
Sbjct: 16 MEGAIGALKTEFASLRTGRASASMLEPIMVDAYGQKTPINQVGTVNVPEPRMVTVNVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI S LG+NP+++G ++ IP L ++ + + KV A+ +E + ++R R
Sbjct: 76 GLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEQRRKELTKVAAQYAEHARVAVRNVR 135
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA G + +D K E E+ LT +++K D++ + K+ EI
Sbjct: 136 RDGMDQIKKAKGDGMSEDDQKFWESEVQSLTDRFIKHVDELLEGKQAEI 184
>gi|254415746|ref|ZP_05029504.1| ribosome recycling factor [Coleofasciculus chthonoplastes PCC 7420]
gi|196177452|gb|EDX72458.1| ribosome recycling factor [Coleofasciculus chthonoplastes PCC 7420]
Length = 173
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A R +RTGRA+ +LD ++VE G PL LA ++ D+ T++I PYD
Sbjct: 1 MKKAVEATQRGFNTIRTGRANASLLDRVMVEYYGSPTPLKSLASINTPDATTITIQPYDK 60
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TL +E +I S +GL P DGQ + IP LT E Q K+ K +E+ K SIR R
Sbjct: 61 STLTLIEKSISLSDIGLTPNNDGQVVRLNIPPLTSERRQEFVKMAGKLAEEGKVSIRNIR 120
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K S + +D+ + L+ +I +LT KY DD+ AKEK+I
Sbjct: 121 RDAVDSVRKQEKNSEISEDESRDLQDQIQQLTDKYTAKIDDLLVAKEKDI 170
>gi|386737646|ref|YP_006210827.1| Ribosome recycling factor [Bacillus anthracis str. H9401]
gi|384387498|gb|AFH85159.1| Ribosome recycling factor [Bacillus anthracis str. H9401]
Length = 185
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRAS LD + V+ G P+ LA ++V +++ L I PYD
Sbjct: 13 MEKAVAAYSRELATVRAGRASASALDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI+ + LGLNP DG + A PALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D ++ ++I + T KY+ D+I K KEKEI E
Sbjct: 133 RDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184
>gi|228992552|ref|ZP_04152479.1| Ribosome-recycling factor [Bacillus pseudomycoides DSM 12442]
gi|228767186|gb|EEM15822.1| Ribosome-recycling factor [Bacillus pseudomycoides DSM 12442]
Length = 185
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRAS LD + V+ G P+ LA ++V +++ L I PYD
Sbjct: 13 MEKAVAAYSRELASVRAGRASASALDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI+ + LGLNP DG + A PALT+E + + K V K +E+ K ++R R
Sbjct: 73 TSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRRDLVKTVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D ++ ++I + T KY+ D+I K KEKEI E
Sbjct: 133 RDANDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEITKNKEKEIME 184
>gi|417936629|ref|ZP_12579937.1| ribosome recycling factor [Streptococcus infantis X]
gi|417938118|ref|ZP_12581416.1| ribosome recycling factor [Streptococcus infantis SK970]
gi|343391208|gb|EGV03783.1| ribosome recycling factor [Streptococcus infantis SK970]
gi|343400279|gb|EGV12798.1| ribosome recycling factor [Streptococcus infantis X]
Length = 185
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRITVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I + T VK DD+ KEKEI E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKATDDAVKHIDDMTANKEKEILE 184
>gi|305681279|ref|ZP_07404086.1| ribosome recycling factor [Corynebacterium matruchotii ATCC 14266]
gi|305659484|gb|EFM48984.1| ribosome recycling factor [Corynebacterium matruchotii ATCC 14266]
Length = 185
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Query: 11 ELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAI 70
ELT +RTGRA+P M + ++ + GV P+ +A VSV +++ + I PY+ + + +E AI
Sbjct: 23 ELTTIRTGRANPAMFNGVVADYYGVPTPITQMATVSVPEARMMLIKPYEMSMMGVIENAI 82
Query: 71 VSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK- 129
+S LG+NP DGQ L IP LT+E + M K+ ED K +IR R+K +D +KK
Sbjct: 83 RNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKLAKSKGEDGKIAIRNVRRKGMDQLKKI 142
Query: 130 -AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+D+++ EKE+D++T+KYV + D++ + KE E+ E
Sbjct: 143 HKDGDAGEDEVQAAEKELDKVTQKYVAAVDEVVQKKEAELME 184
>gi|452965790|gb|EME70808.1| ribosome recycling factor [Magnetospirillum sp. SO-1]
Length = 190
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M++A+ L +E + LR+GRAS +LD ++VE G MPL+ V V + + L++ +D
Sbjct: 18 MDSAVEVLKKEFSGLRSGRASVNLLDPVVVEAYGQTMPLSQCGTVGVPEPRMLTVQVWDK 77
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AI ++ LGLNP+ DGQ + IPAL +E + + KV K SE + S+R R
Sbjct: 78 SQVKAVEKAIANAGLGLNPQADGQTIRVPIPALNEERRKELQKVAGKYSEQARISVRNVR 137
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KK + +D++K+ EKEI +T + +K D+ KEKEI
Sbjct: 138 RDGMDTLKKMEKDGHISEDEIKKHEKEIQSITDETIKKIDEALGHKEKEI 187
>gi|357402026|ref|YP_004913951.1| ribosome recycling factor [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|337768435|emb|CCB77148.1| ribosome recycling factor [Streptomyces cattleya NRRL 8057 = DSM
46488]
Length = 186
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ E G P+N +A SV + + + P+D
Sbjct: 14 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVAEYYGTMTPINQMASFSVPEPRMAVVTPFDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L+ +E AI S LG+NP DG + P LT+E + KV +ED K SIR R
Sbjct: 74 SSLRAIETAIRDSDLGVNPTNDGTIIRVVFPELTEERRKQFIKVAKGKAEDAKVSIRSVR 133
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D+++R EKE+ + T KYV D++ K KE E+ E
Sbjct: 134 RKAKETLDKLAKDGEA-GEDEVRRAEKELQDATDKYVAQVDELLKHKEAELLE 185
>gi|126699754|ref|YP_001088651.1| ribosome recycling factor [Clostridium difficile 630]
gi|254975733|ref|ZP_05272205.1| ribosome recycling factor [Clostridium difficile QCD-66c26]
gi|255093120|ref|ZP_05322598.1| ribosome recycling factor [Clostridium difficile CIP 107932]
gi|255101273|ref|ZP_05330250.1| ribosome recycling factor [Clostridium difficile QCD-63q42]
gi|255307149|ref|ZP_05351320.1| ribosome recycling factor [Clostridium difficile ATCC 43255]
gi|255314862|ref|ZP_05356445.1| ribosome recycling factor [Clostridium difficile QCD-76w55]
gi|255517536|ref|ZP_05385212.1| ribosome recycling factor [Clostridium difficile QCD-97b34]
gi|255650647|ref|ZP_05397549.1| ribosome recycling factor [Clostridium difficile QCD-37x79]
gi|260683737|ref|YP_003215022.1| ribosome recycling factor [Clostridium difficile CD196]
gi|260687397|ref|YP_003218531.1| ribosome recycling factor [Clostridium difficile R20291]
gi|306520574|ref|ZP_07406921.1| ribosome recycling factor [Clostridium difficile QCD-32g58]
gi|384361366|ref|YP_006199218.1| ribosome recycling factor [Clostridium difficile BI1]
gi|423083953|ref|ZP_17072481.1| ribosome recycling factor [Clostridium difficile 002-P50-2011]
gi|423087348|ref|ZP_17075736.1| ribosome recycling factor [Clostridium difficile 050-P50-2011]
gi|423088608|ref|ZP_17076987.1| ribosome recycling factor [Clostridium difficile 70-100-2010]
gi|122973796|sp|Q185S5.1|RRF_CLOD6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|115251191|emb|CAJ69022.1| Ribosome-recycling factor [Clostridium difficile 630]
gi|260209900|emb|CBA63839.1| ribosome recycling factor [Clostridium difficile CD196]
gi|260213414|emb|CBE05060.1| ribosome recycling factor [Clostridium difficile R20291]
gi|357543751|gb|EHJ25766.1| ribosome recycling factor [Clostridium difficile 002-P50-2011]
gi|357544766|gb|EHJ26753.1| ribosome recycling factor [Clostridium difficile 050-P50-2011]
gi|357559494|gb|EHJ40942.1| ribosome recycling factor [Clostridium difficile 70-100-2010]
Length = 185
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I AL E +R GRA+ MLD I V+ G P+N + +SV + + L I+P+D
Sbjct: 13 MNGTIDALKFEFGTIRAGRANAQMLDKIRVDYYGTPTPINQIGAISVPEPRILMISPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI +S LGLNP DG+ + ++PALT+E + + K +K +E+ K IR R
Sbjct: 73 SAMHEIEKAIANSDLGLNPSNDGEVIRLSVPALTEERRKELAKKASKAAEEFKVRIRNER 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + +KK G L +D++K+ + E+ ++T K++K D + KEK+I E
Sbjct: 133 RDANEKIKKMEKGGELTEDELKKAQDEVQKMTDKFIKEIDTLLSKKEKDIME 184
>gi|386358093|ref|YP_006056339.1| ribosome recycling factor [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|365808601|gb|AEW96817.1| ribosome recycling factor [Streptomyces cattleya NRRL 8057 = DSM
46488]
Length = 185
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ E G P+N +A SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVAEYYGTMTPINQMASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L+ +E AI S LG+NP DG + P LT+E + KV +ED K SIR R
Sbjct: 73 SSLRAIETAIRDSDLGVNPTNDGTIIRVVFPELTEERRKQFIKVAKGKAEDAKVSIRSVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D+++R EKE+ + T KYV D++ K KE E+ E
Sbjct: 133 RKAKETLDKLAKDGEA-GEDEVRRAEKELQDATDKYVAQVDELLKHKEAELLE 184
>gi|386714365|ref|YP_006180688.1| ribosome recycling factor [Halobacillus halophilus DSM 2266]
gi|384073921|emb|CCG45414.1| ribosome recycling factor [Halobacillus halophilus DSM 2266]
Length = 185
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SR+L +R GRA+P +LD++ V+ G PLN LA V + + L I PYD
Sbjct: 13 MEQAVQAFSRQLATVRAGRANPAILDNVYVDYYGAATPLNQLAQVGAPEPRLLVITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI + LGL+P DG + IP+LT+E + + KVV K +E+ K +R R
Sbjct: 73 SAIAEIEKAIQKADLGLSPSSDGNVVRINIPSLTEERRKDLAKVVGKYTEEAKVQVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+++ D +KK L +D ++ ++ + T K+V+ D + K KE+EI E
Sbjct: 133 RESNDRLKKLEKEGELTEDDLRSYHDDVQKATDKHVEKIDQLAKTKEEEIME 184
>gi|421488725|ref|ZP_15936113.1| ribosome recycling factor [Streptococcus oralis SK304]
gi|400367942|gb|EJP20957.1| ribosome recycling factor [Streptococcus oralis SK304]
Length = 185
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKEI E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKEILE 184
>gi|212639532|ref|YP_002316052.1| ribosome recycling factor [Anoxybacillus flavithermus WK1]
gi|212561012|gb|ACJ34067.1| Ribosome recycling factor [Anoxybacillus flavithermus WK1]
Length = 183
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A SREL +R GRA+P +L+ I V+ G+ P+ LA + V +++ L I PYD
Sbjct: 11 MDKAVQAFSRELATIRAGRANPALLEKITVDYYGMPTPIIQLAGIQVPEARLLVIQPYDK 70
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ LKE+E AI++S LGL P DG + +IP LT+E + + K+V K +E+ K ++R R
Sbjct: 71 SVLKEIEKAILASDLGLTPSNDGSVIRISIPPLTEERRRELVKLVKKYAEEAKVAVRNIR 130
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ ++I +LT ++ D I K KEKE+ E
Sbjct: 131 RDANDELKKLEKNGEITEDELRGYTEDIQKLTDDHIAKIDAITKEKEKEVME 182
>gi|409386899|ref|ZP_11239237.1| Ribosome recycling factor [Lactococcus raffinolactis 4877]
gi|399205887|emb|CCK20152.1| Ribosome recycling factor [Lactococcus raffinolactis 4877]
Length = 185
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I +L RE +R GRA+ +LD I V+ G PLN LA +SV +++ L I P+D
Sbjct: 13 MKQSIDSLQREFGSIRAGRANASLLDRITVDYYGAPTPLNQLAGISVPEARVLLITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+K++E A+ +S LG+NP+ DG + IPALT+E + + K V KT+E K +IR R
Sbjct: 73 TVIKDIEAALNASDLGINPQSDGNVIRLVIPALTEERRKELAKEVKKTAEGGKVAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A++ KK+ + +D++K LEKEI ++T VK D KE+E+
Sbjct: 133 KDAMNDAKKSEKAKEITEDELKTLEKEIQKVTDAAVKEIDQHTANKEEEL 182
>gi|160944136|ref|ZP_02091366.1| hypothetical protein FAEPRAM212_01638 [Faecalibacterium prausnitzii
M21/2]
gi|158444812|gb|EDP21816.1| ribosome recycling factor [Faecalibacterium prausnitzii M21/2]
gi|295105052|emb|CBL02596.1| ribosome recycling factor [Faecalibacterium prausnitzii SL3/3]
Length = 184
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 107/171 (62%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M++++ LSREL +R GRA+P +LD ++V+ G P+ LA V+V +++TL+I P+D
Sbjct: 12 MKSSVEHLSRELAAVRAGRANPAVLDKVVVDYYGAPTPIQQLAAVAVSEARTLTITPWDR 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ + AI++S +G+ P DG + PA +E + + K V+K ED K ++R R
Sbjct: 72 TLLRPISKAIMASDVGITPIDDGVTIRLNFPAPNEERRKQLAKEVSKLGEDAKVAVRNVR 131
Query: 121 QKALD---MMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D MKKAG L +D K +E+++ +LT KY+K+ D + K+KEI
Sbjct: 132 RDAMDKAKAMKKAG-ELTEDTQKTMEEDVQKLTDKYIKNIDAAVEEKQKEI 181
>gi|395771733|ref|ZP_10452248.1| ribosome recycling factor [Streptomyces acidiscabies 84-104]
Length = 185
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 95/172 (55%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ E G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVAEYYGAPTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT+E + KV +ED + SIR R
Sbjct: 73 TALRNIEQAIRDSDLGVNPSNDGNIIRVNFPELTEERRRDYIKVARGKAEDSRVSIRAVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K +D+++R EKE+D+LT KYV D++ K KE E+ E
Sbjct: 133 RKAKDTLDKLVKDKESGEDEVRRAEKELDDLTSKYVAQVDELLKHKEAELLE 184
>gi|374338507|ref|YP_005095222.1| ribosome recycling factor [Streptococcus macedonicus ACA-DC 198]
gi|372284622|emb|CCF02910.1| Ribosome recycling factor [Streptococcus macedonicus ACA-DC 198]
Length = 185
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
E + +L+RE + +R GRA+ +LD I VE G PLN LA ++V +++ L I+P+D
Sbjct: 13 FEQSHSSLAREFSAIRAGRANASLLDRIQVEYYGAMTPLNQLASITVPEARVLLISPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK++E AI +S LG+NP DG + IPALT+E + + K V K E+ K +IR R
Sbjct: 73 SSLKDIEHAINASDLGINPANDGSVIRLVIPALTEETRKELAKEVKKAGENAKVAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D KK + +D++K LEK+I + T VK D + KEKE+ E
Sbjct: 133 RDAMDEAKKQEKAKEITEDELKVLEKDIQKATDDAVKHIDAMTANKEKELLE 184
>gi|322385103|ref|ZP_08058750.1| ribosome recycling factor [Streptococcus cristatus ATCC 51100]
gi|417921691|ref|ZP_12565181.1| ribosome recycling factor [Streptococcus cristatus ATCC 51100]
gi|321270727|gb|EFX53640.1| ribosome recycling factor [Streptococcus cristatus ATCC 51100]
gi|342833576|gb|EGU67856.1| ribosome recycling factor [Streptococcus cristatus ATCC 51100]
Length = 185
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN L+ +++ +++ L + P+D +++K++
Sbjct: 19 SLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQLSSITIPEARVLLVTPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERAINASDLGITPSSDGSVIRLVIPALTEETRRELAKEVKKVGENAKIAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKVLEKDIQKVTDDAVKHIDDMTATKEKELLE 184
>gi|116669931|ref|YP_830864.1| ribosome recycling factor [Arthrobacter sp. FB24]
gi|172044060|sp|A0JUP4.1|RRF_ARTS2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|116610040|gb|ABK02764.1| ribosome recycling factor [Arthrobacter sp. FB24]
Length = 185
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ + +RTGRA+PG+ + ++V+ G PL LA +V D++T+ I P+D
Sbjct: 13 MDKAVEVAKEDFASIRTGRATPGLYNRVLVDYYGSPTPLQQLASFAVPDARTILITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+++E A+ S +G NP DG + IP LTKE + K+V ED K SIR R
Sbjct: 73 TALRDIERALSDSEVGANPSNDGNVIRITIPELTKERRKEYVKIVKAKGEDAKVSIRNIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D+ R EKE+D LTK +V DD+ K KE E+ E
Sbjct: 133 RKAKETLDKLVKDGEA-GEDEGARGEKELDALTKAHVDGIDDLLKRKEAELLE 184
>gi|403069155|ref|ZP_10910487.1| ribosome recycling factor [Oceanobacillus sp. Ndiop]
Length = 185
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 98/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A S+ L +R GRA+P +LD I V+ G PLN LA V +++ L+I PYD
Sbjct: 13 MEQAVQAFSKNLASVRAGRANPSLLDSIYVDYYGASTPLNQLATVGAPEARLLTITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L ++E AI + LGL+P DG + IP LT+E + + KVV K E+ + IR R
Sbjct: 73 TVLSDIERAIQIANLGLSPSNDGNMIRINIPPLTEERRKDLVKVVGKYVEESRVQIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK+ L +D ++ + ++ + T Y+ D++ K KEKEI E
Sbjct: 133 RDINDSLKKSEKNGDLTEDDLRAFQDDVQKATNDYISKLDELAKNKEKEIME 184
>gi|375090663|ref|ZP_09736976.1| ribosome recycling factor [Facklamia languida CCUG 37842]
gi|374565084|gb|EHR36360.1| ribosome recycling factor [Facklamia languida CCUG 37842]
Length = 186
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I A REL +R G A+ +LD + VE G + PLN LA +++ + + L I+PYD
Sbjct: 14 MQKSIEAFQRELGTIRAGVANASILDRVSVEYYGAETPLNQLASITIPEPRMLMISPYDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L+ +E I+ S +G+ P DG+ + IPALTKE + + KVV K E+ K +IR R
Sbjct: 74 SSLQNIEKGILMSDVGITPTNDGEVIRLVIPALTKERREDLVKVVGKEQENAKIAIRNIR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK + +D +KR EK+I +LT K D + KE+EI
Sbjct: 134 RDAIDSVKKLEKAKEITEDDVKRYEKDIQQLTDDSTKEIDRLTSLKEEEI 183
>gi|451334967|ref|ZP_21905537.1| Ribosome recycling factor [Amycolatopsis azurea DSM 43854]
gi|449422506|gb|EMD27880.1| Ribosome recycling factor [Amycolatopsis azurea DSM 43854]
Length = 185
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L+ +RTGRA PGM ++V+ G PLN LA V++ +++ I PYD
Sbjct: 13 MEKAVSVAKEDLSSVRTGRAHPGMFSRVVVDYYGAPTPLNQLAGVNIPEARMALIKPYDQ 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+L +E AI S LG+NP DG + IP LT+E + M KV ED + SIR R
Sbjct: 73 TSLNAIEKAIRESDLGVNPSNDGNVIRIVIPQLTEERRKEMVKVAKSKGEDARVSIRSVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD +KK G + +D++ EKE+ LT Y D++ K KE E+ E
Sbjct: 133 RKAKEELDRIKKDGEA-GEDEVVHAEKELQNLTDSYTHKVDELVKHKEAELLE 184
>gi|42782915|ref|NP_980162.1| ribosome recycling factor [Bacillus cereus ATCC 10987]
gi|206978510|ref|ZP_03239367.1| ribosome recycling factor [Bacillus cereus H3081.97]
gi|217961244|ref|YP_002339812.1| ribosome recycling factor [Bacillus cereus AH187]
gi|229140465|ref|ZP_04269020.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST26]
gi|229197934|ref|ZP_04324650.1| Ribosome-recycling factor [Bacillus cereus m1293]
gi|375285747|ref|YP_005106186.1| ribosome recycling factor [Bacillus cereus NC7401]
gi|384181637|ref|YP_005567399.1| ribosome recycling factor [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|402556055|ref|YP_006597326.1| ribosome recycling factor [Bacillus cereus FRI-35]
gi|423353526|ref|ZP_17331153.1| ribosome-recycling factor [Bacillus cereus IS075]
gi|423374379|ref|ZP_17351717.1| ribosome-recycling factor [Bacillus cereus AND1407]
gi|423567281|ref|ZP_17543528.1| ribosome-recycling factor [Bacillus cereus MSX-A12]
gi|423574570|ref|ZP_17550689.1| ribosome-recycling factor [Bacillus cereus MSX-D12]
gi|423604549|ref|ZP_17580442.1| ribosome-recycling factor [Bacillus cereus VD102]
gi|60390260|sp|Q732P5.1|RRF_BACC1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|226703254|sp|B7HLF7.1|RRF_BACC7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|42738842|gb|AAS42770.1| ribosome recycling factor [Bacillus cereus ATCC 10987]
gi|206743279|gb|EDZ54729.1| ribosome recycling factor [Bacillus cereus H3081.97]
gi|217063331|gb|ACJ77581.1| ribosome recycling factor [Bacillus cereus AH187]
gi|228585652|gb|EEK43754.1| Ribosome-recycling factor [Bacillus cereus m1293]
gi|228643026|gb|EEK99302.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST26]
gi|324327721|gb|ADY22981.1| ribosome recycling factor [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358354274|dbj|BAL19446.1| ribosome recycling factor [Bacillus cereus NC7401]
gi|401089339|gb|EJP97510.1| ribosome-recycling factor [Bacillus cereus IS075]
gi|401094291|gb|EJQ02373.1| ribosome-recycling factor [Bacillus cereus AND1407]
gi|401212095|gb|EJR18841.1| ribosome-recycling factor [Bacillus cereus MSX-D12]
gi|401214369|gb|EJR21099.1| ribosome-recycling factor [Bacillus cereus MSX-A12]
gi|401245169|gb|EJR51527.1| ribosome-recycling factor [Bacillus cereus VD102]
gi|401797265|gb|AFQ11124.1| ribosome recycling factor [Bacillus cereus FRI-35]
Length = 185
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRA+ +LD + V+ G P+ LA ++V +++ L I PYD
Sbjct: 13 MEKAVAAYSRELATVRAGRANASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI+ + LGLNP DG + A PALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D ++ ++I + T KY+ D+I K KEKEI E
Sbjct: 133 RDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184
>gi|295689595|ref|YP_003593288.1| ribosome recycling factor [Caulobacter segnis ATCC 21756]
gi|295431498|gb|ADG10670.1| ribosome recycling factor [Caulobacter segnis ATCC 21756]
Length = 188
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ AL E LRTGRAS +LD ++VE G PLN +A VSV + + ++++ +D
Sbjct: 16 MDKAVAALKEEFGSLRTGRASASLLDQVMVEAYGSTTPLNAVASVSVPEPRQINVSVWDR 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI +S LGLNP V+GQ L IP LT+E + + K+ K +E K ++R R
Sbjct: 76 GVVVSVEKAIRASGLGLNPVVEGQNLRIPIPPLTEERRRDLQKIAGKYAEQQKIAVRNVR 135
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KKA ++ +D+ K++E E+ +LT + +K D+ K KE+EI
Sbjct: 136 RDANDDLKKAEKDGAIAEDERKKMETEVQKLTDEAIKRIDEALKTKEQEI 185
>gi|384439930|ref|YP_005654654.1| Ribosome-recycling factor [Thermus sp. CCB_US3_UF1]
gi|359291063|gb|AEV16580.1| Ribosome-recycling factor [Thermus sp. CCB_US3_UF1]
Length = 185
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ AL L LRTGRA+P +L H+ VE G +PL+ +A VS D++TL + +D
Sbjct: 14 MQKSLEALEHNLAGLRTGRANPALLLHLKVEYYGTHVPLSQIATVSAPDARTLVVQSWDQ 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LK +E AI S LGLNP G L IP LT+E + + K +E+ + +IR R
Sbjct: 74 NALKAIEKAIRDSDLGLNPANKGDALYINIPPLTEERRKELVKAARHMAEEGRIAIRNVR 133
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++AL+ +KK L +D KR E EI ++T +++ AD + + KE+EI
Sbjct: 134 REALEKLKKLAKELHLSEDDTKRAEAEIQKITDEFIAKADALAEKKEQEI 183
>gi|225021116|ref|ZP_03710308.1| hypothetical protein CORMATOL_01128 [Corynebacterium matruchotii
ATCC 33806]
gi|224946116|gb|EEG27325.1| hypothetical protein CORMATOL_01128 [Corynebacterium matruchotii
ATCC 33806]
Length = 205
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Query: 11 ELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAI 70
ELT +RTGRA+P M + ++ + GV P+ +A VSV +++ + I PY+ + + +E AI
Sbjct: 43 ELTTIRTGRANPAMFNGVVADYYGVPTPITQMATVSVPEARMMLIKPYEMSMMGVIENAI 102
Query: 71 VSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK- 129
+S LG+NP DGQ L IP LT+E + M K+ ED K +IR R+K +D +KK
Sbjct: 103 RNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKLAKSKGEDGKIAIRNVRRKGMDQLKKI 162
Query: 130 -AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+D+++ EKE+D++T+KYV + D++ + KE E+ E
Sbjct: 163 HKDGDAGEDEVQAAEKELDKVTQKYVAAVDEVVQKKEAELME 204
>gi|30021912|ref|NP_833543.1| ribosome recycling factor [Bacillus cereus ATCC 14579]
gi|47569102|ref|ZP_00239791.1| ribosome recycling factor [Bacillus cereus G9241]
gi|206972656|ref|ZP_03233597.1| ribosome recycling factor [Bacillus cereus AH1134]
gi|218234587|ref|YP_002368625.1| ribosome recycling factor [Bacillus cereus B4264]
gi|228922578|ref|ZP_04085878.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228954100|ref|ZP_04116129.1| Ribosome-recycling factor [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228960040|ref|ZP_04121704.1| Ribosome-recycling factor [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228986967|ref|ZP_04147093.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229047510|ref|ZP_04193100.1| Ribosome-recycling factor [Bacillus cereus AH676]
gi|229071322|ref|ZP_04204545.1| Ribosome-recycling factor [Bacillus cereus F65185]
gi|229081079|ref|ZP_04213589.1| Ribosome-recycling factor [Bacillus cereus Rock4-2]
gi|229111295|ref|ZP_04240848.1| Ribosome-recycling factor [Bacillus cereus Rock1-15]
gi|229129100|ref|ZP_04258073.1| Ribosome-recycling factor [Bacillus cereus BDRD-Cer4]
gi|229146395|ref|ZP_04274766.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST24]
gi|229152023|ref|ZP_04280218.1| Ribosome-recycling factor [Bacillus cereus m1550]
gi|229157400|ref|ZP_04285478.1| Ribosome-recycling factor [Bacillus cereus ATCC 4342]
gi|229180100|ref|ZP_04307444.1| Ribosome-recycling factor [Bacillus cereus 172560W]
gi|229191993|ref|ZP_04318963.1| Ribosome-recycling factor [Bacillus cereus ATCC 10876]
gi|296504319|ref|YP_003666019.1| ribosome recycling factor [Bacillus thuringiensis BMB171]
gi|365159399|ref|ZP_09355580.1| ribosome-recycling factor [Bacillus sp. 7_6_55CFAA_CT2]
gi|423412371|ref|ZP_17389491.1| ribosome-recycling factor [Bacillus cereus BAG3O-2]
gi|423425960|ref|ZP_17402991.1| ribosome-recycling factor [Bacillus cereus BAG3X2-2]
gi|423431844|ref|ZP_17408848.1| ribosome-recycling factor [Bacillus cereus BAG4O-1]
gi|423437279|ref|ZP_17414260.1| ribosome-recycling factor [Bacillus cereus BAG4X12-1]
gi|423503499|ref|ZP_17480091.1| ribosome-recycling factor [Bacillus cereus HD73]
gi|423582034|ref|ZP_17558145.1| ribosome-recycling factor [Bacillus cereus VD014]
gi|423585767|ref|ZP_17561854.1| ribosome-recycling factor [Bacillus cereus VD045]
gi|423628917|ref|ZP_17604666.1| ribosome-recycling factor [Bacillus cereus VD154]
gi|423635405|ref|ZP_17611058.1| ribosome-recycling factor [Bacillus cereus VD156]
gi|423641095|ref|ZP_17616713.1| ribosome-recycling factor [Bacillus cereus VD166]
gi|423649687|ref|ZP_17625257.1| ribosome-recycling factor [Bacillus cereus VD169]
gi|423656683|ref|ZP_17631982.1| ribosome-recycling factor [Bacillus cereus VD200]
gi|449090765|ref|YP_007423206.1| ribosome recycling factor [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|33301535|sp|Q812X4.1|RRF_BACCR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|226703253|sp|B7HDU7.1|RRF_BACC4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|29897468|gb|AAP10744.1| Ribosome Recycling Factor (RRF) [Bacillus cereus ATCC 14579]
gi|47554264|gb|EAL12626.1| ribosome recycling factor [Bacillus cereus G9241]
gi|206732413|gb|EDZ49594.1| ribosome recycling factor [Bacillus cereus AH1134]
gi|218162544|gb|ACK62536.1| ribosome recycling factor [Bacillus cereus B4264]
gi|228591544|gb|EEK49393.1| Ribosome-recycling factor [Bacillus cereus ATCC 10876]
gi|228603309|gb|EEK60786.1| Ribosome-recycling factor [Bacillus cereus 172560W]
gi|228626127|gb|EEK82876.1| Ribosome-recycling factor [Bacillus cereus ATCC 4342]
gi|228631372|gb|EEK88006.1| Ribosome-recycling factor [Bacillus cereus m1550]
gi|228637028|gb|EEK93487.1| Ribosome-recycling factor [Bacillus cereus BDRD-ST24]
gi|228654337|gb|EEL10202.1| Ribosome-recycling factor [Bacillus cereus BDRD-Cer4]
gi|228672071|gb|EEL27362.1| Ribosome-recycling factor [Bacillus cereus Rock1-15]
gi|228702123|gb|EEL54599.1| Ribosome-recycling factor [Bacillus cereus Rock4-2]
gi|228711776|gb|EEL63728.1| Ribosome-recycling factor [Bacillus cereus F65185]
gi|228723757|gb|EEL75112.1| Ribosome-recycling factor [Bacillus cereus AH676]
gi|228772745|gb|EEM21185.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228799556|gb|EEM46509.1| Ribosome-recycling factor [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228805666|gb|EEM52256.1| Ribosome-recycling factor [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228837007|gb|EEM82348.1| Ribosome-recycling factor [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|296325371|gb|ADH08299.1| ribosome recycling factor [Bacillus thuringiensis BMB171]
gi|363625397|gb|EHL76438.1| ribosome-recycling factor [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104439|gb|EJQ12416.1| ribosome-recycling factor [Bacillus cereus BAG3O-2]
gi|401110707|gb|EJQ18606.1| ribosome-recycling factor [Bacillus cereus BAG3X2-2]
gi|401116600|gb|EJQ24438.1| ribosome-recycling factor [Bacillus cereus BAG4O-1]
gi|401120434|gb|EJQ28230.1| ribosome-recycling factor [Bacillus cereus BAG4X12-1]
gi|401212913|gb|EJR19654.1| ribosome-recycling factor [Bacillus cereus VD014]
gi|401233113|gb|EJR39609.1| ribosome-recycling factor [Bacillus cereus VD045]
gi|401268462|gb|EJR74510.1| ribosome-recycling factor [Bacillus cereus VD154]
gi|401278156|gb|EJR84092.1| ribosome-recycling factor [Bacillus cereus VD156]
gi|401280156|gb|EJR86078.1| ribosome-recycling factor [Bacillus cereus VD166]
gi|401282967|gb|EJR88864.1| ribosome-recycling factor [Bacillus cereus VD169]
gi|401290424|gb|EJR96118.1| ribosome-recycling factor [Bacillus cereus VD200]
gi|402458853|gb|EJV90593.1| ribosome-recycling factor [Bacillus cereus HD73]
gi|449024522|gb|AGE79685.1| ribosome recycling factor [Bacillus thuringiensis serovar kurstaki
str. HD73]
Length = 185
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRA+ +LD + V+ G P+ LA ++V +++ L I PYD
Sbjct: 13 MEKAVAAYSRELATVRAGRANASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI+ + LGLNP DG + A PALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D ++ ++I + T KY+ D+I K KEKEI E
Sbjct: 133 RDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184
>gi|381189667|ref|ZP_09897192.1| ribosome recycling factor [Thermus sp. RL]
gi|380452244|gb|EIA39843.1| ribosome recycling factor [Thermus sp. RL]
Length = 185
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ L L LRTGRA+P +L H+ VE G +PLN +A V+ D++TL + +D
Sbjct: 14 MQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGTHVPLNQIATVTAPDARTLVVQSWDQ 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LK +E AI S LGL P G L IP LT+E + + + V + +E+ + +IR R
Sbjct: 74 NALKAIEKAIRDSDLGLKPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIR 133
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKE 167
++ALD +KK L +D+ KR E EI ++T +++ AD + + KE+E
Sbjct: 134 REALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQE 182
>gi|319786511|ref|YP_004145986.1| ribosome recycling factor [Pseudoxanthomonas suwonensis 11-1]
gi|317465023|gb|ADV26755.1| ribosome recycling factor [Pseudoxanthomonas suwonensis 11-1]
Length = 185
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 106/172 (61%), Gaps = 6/172 (3%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I AL L K+RTGRAS G++D I V G +PL+ +A VSV D+++L I P+D
Sbjct: 13 MAKSIEALRHNLVKVRTGRASTGLVDTIRVSAYGSDVPLSQVAAVSVSDARSLVITPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI++S LGL P G + +PALT+E + + KVVA ED K +IR R
Sbjct: 73 SMVGPIEKAILASDLGLTPNTAGTTIRLNLPALTEERRRDLAKVVASEGEDAKVAIRNVR 132
Query: 121 ----QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q+ D++K+ + +D ++R E +I ++T K +K D++ KAKE+E+
Sbjct: 133 RDANQQVKDLLKE--KQVTEDDVRRAEDDIQKITDKAIKDVDEVVKAKEQEL 182
>gi|118489544|gb|ABK96574.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 286
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME I + +RTGRA+P MLD I VE G + L +A +S D+ +L + PYD
Sbjct: 114 MEKTIDTMRTNFNSVRTGRANPSMLDKIEVEYYGTPVSLKSIAQISTPDASSLLVQPYDK 173
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK +E AIVSS LGL P DG+ + +IP LT E + + K+VAK +E+ K ++R R
Sbjct: 174 SSLKAIEKAIVSSDLGLTPNNDGEVIRMSIPQLTSERRKELSKMVAKLAEEGKVALRNIR 233
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ AL +K L +D +K L ++ +LT +Y+K D+I K KEKE+
Sbjct: 234 RDALKAYEKLEKEKKLSEDNVKDLSSDLQKLTDEYMKKLDNIFKQKEKEL 283
>gi|73748219|ref|YP_307458.1| ribosome recycling factor [Dehalococcoides sp. CBDB1]
gi|289432268|ref|YP_003462141.1| ribosome recycling factor [Dehalococcoides sp. GT]
gi|452203227|ref|YP_007483360.1| ribosome recycling factor [Dehalococcoides mccartyi DCMB5]
gi|452204663|ref|YP_007484792.1| ribosome recycling factor [Dehalococcoides mccartyi BTF08]
gi|123620145|sp|Q3ZZC4.1|RRF_DEHSC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|73659935|emb|CAI82542.1| ribosome recycling factor [Dehalococcoides sp. CBDB1]
gi|288945988|gb|ADC73685.1| ribosome recycling factor [Dehalococcoides sp. GT]
gi|452110286|gb|AGG06018.1| ribosome recycling factor [Dehalococcoides mccartyi DCMB5]
gi|452111719|gb|AGG07450.1| ribosome recycling factor [Dehalococcoides mccartyi BTF08]
Length = 185
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A++ L +EL+ +RTGR+SP +++HI VE GV P+NHLA +S D + ++I P+D
Sbjct: 13 MSASLDVLLQELSGIRTGRSSPALVEHIRVEYAGVPTPINHLANISAPDPRYITIQPWDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LGL P DG + IP L++E Q M K+V K E+ K ++R R
Sbjct: 73 SCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKIVNKRLEEDKIAMRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D MKK + +D +KR ++ ++T ++ AD + KE E+ +
Sbjct: 133 RDAMDEMKKLEKAKEISQDDLKRGSDQLQKITDNFIAKADKLGADKEAELRQ 184
>gi|288905833|ref|YP_003431055.1| ribosome recycling factor [Streptococcus gallolyticus UCN34]
gi|306831922|ref|ZP_07465077.1| ribosome recycling factor [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|306834034|ref|ZP_07467155.1| ribosome recycling factor [Streptococcus bovis ATCC 700338]
gi|325978868|ref|YP_004288584.1| ribosome-recycling factor [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|336064767|ref|YP_004559626.1| ribosome recycling factor [Streptococcus pasteurianus ATCC 43144]
gi|386338302|ref|YP_006034471.1| ribosome recycling factor [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288732559|emb|CBI14131.1| ribosome recycling factor [Streptococcus gallolyticus UCN34]
gi|304423822|gb|EFM26967.1| ribosome recycling factor [Streptococcus bovis ATCC 700338]
gi|304425848|gb|EFM28965.1| ribosome recycling factor [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325178796|emb|CBZ48840.1| Ribosome-recycling factor [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334280938|dbj|BAK28512.1| ribosome recycling factor [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|334282967|dbj|BAK30540.1| ribosome recycling factor [Streptococcus pasteurianus ATCC 43144]
Length = 185
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE G PLN LA ++V +++ L I+P+D ++LK++
Sbjct: 19 SLAREFAAIRAGRANASLLDRIQVEYYGAMTPLNQLASITVPEARVLLISPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI +S LG+NP DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 EHAINASDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I + T + VK D + KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKVLEKDIQKATDEAVKHIDAMTANKEKELLE 184
>gi|443623810|ref|ZP_21108299.1| putative Ribosome-recycling factor [Streptomyces viridochromogenes
Tue57]
gi|443342675|gb|ELS56828.1| putative Ribosome-recycling factor [Streptomyces viridochromogenes
Tue57]
Length = 186
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 95/172 (55%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ E G P+N LA SV + + + P+D
Sbjct: 14 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVAEYYGAPTPINQLASFSVPEPRMAVVTPFDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV +ED + SIR R
Sbjct: 74 SALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTEERRRDYIKVAKGKAEDARVSIRSVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 134 RKAKDAIDKLIKDGEIGEDEGRRAEKELDDTTHKYVAQVDELLKHKEAELLE 185
>gi|325001877|ref|ZP_08122989.1| ribosome recycling factor [Pseudonocardia sp. P1]
Length = 185
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +LT +RTGRA+P M I+V+ G PLN LA VS+ +++ I PYD
Sbjct: 13 MEKAVGVARDDLTGVRTGRATPSMFSRIVVDYYGAATPLNQLASVSIPEARMAVIKPYDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ LK +E AI S LG+NP DGQ + IP L++E + M KV ED + +R R
Sbjct: 73 SQLKAMEKAIAESDLGVNPSNDGQIIRVIIPQLSEERRRDMVKVARGKGEDARVVMRGLR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA+D + + +D++ R EKE+ LT +YV D++ K KE E+ E
Sbjct: 133 RKAMDELHRIQRDGEAGEDEVVRGEKELQVLTDRYVAQIDELVKNKESELLE 184
>gi|444920137|ref|ZP_21239980.1| Ribosome-recycling factor [Wohlfahrtiimonas chitiniclastica SH04]
gi|444508456|gb|ELV08625.1| Ribosome-recycling factor [Wohlfahrtiimonas chitiniclastica SH04]
Length = 181
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 96/170 (56%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I +L L KLRTGRA +LDHI VE G PL A VSVLDS+TL + P+D
Sbjct: 13 MNLSIESLKNALQKLRTGRAHTSLLDHIEVEFYGTPTPLTQAANVSVLDSRTLGVTPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + +E AI+ S LGLNP G + +PALT+E + M KVV E K +IR R
Sbjct: 73 NMVGPIEKAIIMSDLGLNPSTTGTLIRIPLPALTEERRRDMVKVVKGEGEGAKVAIRNIR 132
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A +K A + +D ++R E I +LT + D + AKEKE+ E
Sbjct: 133 RDANQKLKDA--EISEDDVRRGEDAIQKLTDAMISEVDAVLAAKEKELME 180
>gi|147669001|ref|YP_001213819.1| ribosome recycling factor [Dehalococcoides sp. BAV1]
gi|146269949|gb|ABQ16941.1| ribosome recycling factor [Dehalococcoides sp. BAV1]
Length = 173
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A++ L +EL+ +RTGR+SP +++HI VE GV P+NHLA +S D + ++I P+D
Sbjct: 1 MSASLDVLLQELSGIRTGRSSPALVEHIRVEYAGVPTPINHLANISAPDPRYITIQPWDR 60
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LGL P DG + IP L++E Q M K+V K E+ K ++R R
Sbjct: 61 SCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKIVNKRLEEDKIAMRNVR 120
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D MKK + +D +KR ++ ++T ++ AD + KE E+ +
Sbjct: 121 RDAMDEMKKLEKAKEISQDDLKRGSDQLQKITDNFIAKADKLGADKEAELRQ 172
>gi|421872765|ref|ZP_16304382.1| ribosome recycling factor [Brevibacillus laterosporus GI-9]
gi|372458180|emb|CCF13931.1| ribosome recycling factor [Brevibacillus laterosporus GI-9]
Length = 185
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI L ++L LR GRA+P MLD I+V+ G P+N LA V + + L + P+D
Sbjct: 13 MSKAIQTLKKDLATLRAGRATPAMLDKIMVDYYGTPTPINQLANVVAPEPRMLQVQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LK+++ AI+ S +GL P DG + A+P LT+E + + KV K+ ED K +IR R
Sbjct: 73 NALKDIDKAIMQSDIGLTPTNDGSVIRIAVPPLTEERRRDLVKVANKSGEDAKVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK +S+ +D+ + ++ + + T K++ D I K KEK+I E
Sbjct: 133 RDANDGIKKLEKAASISEDESRGHQETVQKTTDKFIAEVDKIVKDKEKDILE 184
>gi|365921592|ref|ZP_09445858.1| ribosome recycling factor [Cardiobacterium valvarum F0432]
gi|364575783|gb|EHM53151.1| ribosome recycling factor [Cardiobacterium valvarum F0432]
Length = 185
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ +L EL+K+RTGRA+ +LDH+ VE G +PL+ A VSV D ++LSI ++
Sbjct: 13 MEKSVKSLEHELSKIRTGRANTSLLDHVQVEYYGSMVPLSQAANVSVTDHRSLSIQVWER 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + +E AI++S LGL P GQ + +P LT+E + + K+V E K +IR R
Sbjct: 73 NMIAVIEKAIINSDLGLTPNTAGQTIHINLPPLTEERRKDLVKIVRSEGEQAKVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+ +K+ +D +R E EI +LT KYV+ D + KEKE+ E
Sbjct: 133 RDAIQSVKQLVNDKQASEDDERRAETEIQKLTDKYVEQVDKVLSEKEKELME 184
>gi|306829302|ref|ZP_07462492.1| ribosome recycling factor [Streptococcus mitis ATCC 6249]
gi|315612956|ref|ZP_07887867.1| ribosome recycling factor [Streptococcus sanguinis ATCC 49296]
gi|322374516|ref|ZP_08049030.1| ribosome recycling factor [Streptococcus sp. C300]
gi|331266588|ref|YP_004326218.1| ribosome recycling factor [Streptococcus oralis Uo5]
gi|406576396|ref|ZP_11052025.1| ribosome recycling factor [Streptococcus sp. GMD6S]
gi|406586389|ref|ZP_11061320.1| ribosome recycling factor [Streptococcus sp. GMD1S]
gi|417915219|ref|ZP_12558840.1| ribosome recycling factor [Streptococcus mitis bv. 2 str. SK95]
gi|418974846|ref|ZP_13522755.1| ribosome recycling factor [Streptococcus oralis SK1074]
gi|419781538|ref|ZP_14307357.1| ribosome recycling factor [Streptococcus oralis SK100]
gi|419782669|ref|ZP_14308467.1| ribosome recycling factor [Streptococcus oralis SK610]
gi|419813610|ref|ZP_14338423.1| ribosome recycling factor [Streptococcus sp. GMD2S]
gi|419816973|ref|ZP_14341144.1| ribosome recycling factor [Streptococcus sp. GMD4S]
gi|304428388|gb|EFM31478.1| ribosome recycling factor [Streptococcus mitis ATCC 6249]
gi|315315066|gb|EFU63107.1| ribosome recycling factor [Streptococcus sanguinis ATCC 49296]
gi|321280016|gb|EFX57055.1| ribosome recycling factor [Streptococcus sp. C300]
gi|326683260|emb|CBZ00878.1| ribosome recycling factor [Streptococcus oralis Uo5]
gi|342835333|gb|EGU69584.1| ribosome recycling factor [Streptococcus mitis bv. 2 str. SK95]
gi|383182882|gb|EIC75430.1| ribosome recycling factor [Streptococcus oralis SK610]
gi|383184138|gb|EIC76665.1| ribosome recycling factor [Streptococcus oralis SK100]
gi|383348217|gb|EID26176.1| ribosome recycling factor [Streptococcus oralis SK1074]
gi|404461403|gb|EKA07334.1| ribosome recycling factor [Streptococcus sp. GMD6S]
gi|404466514|gb|EKA11846.1| ribosome recycling factor [Streptococcus sp. GMD4S]
gi|404472721|gb|EKA17136.1| ribosome recycling factor [Streptococcus sp. GMD2S]
gi|404474069|gb|EKA18389.1| ribosome recycling factor [Streptococcus sp. GMD1S]
Length = 185
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKEI E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKEILE 184
>gi|94986827|ref|YP_594760.1| ribosome recycling factor [Lawsonia intracellularis PHE/MN1-00]
gi|442555658|ref|YP_007365483.1| ribosome recycling factor [Lawsonia intracellularis N343]
gi|190360249|sp|Q1MRD7.1|RRF_LAWIP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|94731076|emb|CAJ54439.1| Ribosome recycling factor [Lawsonia intracellularis PHE/MN1-00]
gi|441493105|gb|AGC49799.1| ribosome recycling factor [Lawsonia intracellularis N343]
Length = 188
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI +L +E TKLRTGRAS ++D I V+ G P+N LA +++ DS +++I P+D
Sbjct: 16 MVKAITSLEKEFTKLRTGRASTSIVDTIKVDYYGTPTPINQLASIAIPDSSSITIQPWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+E AI+ S LGL P DG+ + +P LT++ + + K+ K ED K +IR R
Sbjct: 76 TAFNPIEKAILKSELGLTPINDGKIIRITLPPLTEDRRKDLVKLARKYGEDTKIAIRNIR 135
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + +K+ + +D++K ++I ++T Y+K + CK KEKEI E
Sbjct: 136 RDANEQLKRLEKNKFISEDELKGFTEDIQKMTDNYIKEVETHCKTKEKEIIE 187
>gi|193215251|ref|YP_001996450.1| ribosome recycling factor [Chloroherpeton thalassium ATCC 35110]
gi|193088728|gb|ACF14003.1| ribosome recycling factor [Chloroherpeton thalassium ATCC 35110]
Length = 187
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I + E +RTG+AS G+LD I VE G MPL + V LDS+TL++ +D
Sbjct: 15 MQKSIENVRHEFAAIRTGKASAGLLDGIKVEAYGQAMPLKQVGNVGTLDSRTLTVQVWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
+ +E AI S LGLNP DGQ + +P LT+E + KV K +E+ K ++IR
Sbjct: 75 GMVATVEKAIRDSNLGLNPATDGQTIRIPVPPLTEERRKEYVKVTKKQAEEGKVAVRNIR 134
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
R A+D ++K + +D+ R +K+ID LT KY KS D++ KEKEI E
Sbjct: 135 RDANHAIDKLEKE-KLITEDEKARAKKDIDNLTHKYEKSLDELTSKKEKEIME 186
>gi|386857050|ref|YP_006261227.1| Ribosome-recycling factor [Deinococcus gobiensis I-0]
gi|380000579|gb|AFD25769.1| Ribosome-recycling factor [Deinococcus gobiensis I-0]
Length = 183
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 100/168 (59%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL L+ LRTGRA+PG+L ++V+ G MP++ +A ++ D++TL I P+D
Sbjct: 15 MGKAIEALENNLSVLRTGRANPGILKKVLVDYYGSTMPIDQVASITTPDARTLVITPWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI S LGLNP G + ++P LT+E + + K SED + +IR R
Sbjct: 75 GALAPIERAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYSEDARVAIRNIR 134
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ LD +KK + D++KR E ++ ++T +YV D + KE+EI
Sbjct: 135 KQTLDEVKKV-EGIGDDEIKRGEADVQKITDEYVARVDSTFQKKEQEI 181
>gi|311030097|ref|ZP_07708187.1| ribosome recycling factor [Bacillus sp. m3-13]
Length = 185
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRAS +LD + V+ G P+N LA ++V +++ L + PYD
Sbjct: 13 MEKAVQAYSRELATIRAGRASAALLDKVTVDYYGAPTPVNQLASLNVPEARLLVVQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+L ++E AI+ + LGLNP DG + +IPALT+E + + K + K SE+ K IR R
Sbjct: 73 TSLGDIEKAIIKADLGLNPSNDGTVIRISIPALTEERRKELVKQIKKISEEAKVGIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D+++ +I + T ++ D + K KEKEI E
Sbjct: 133 RDGNDDLKKLEKNGEITEDELRGYTDDIQKQTDAFIAKVDTVTKEKEKEIME 184
>gi|300088119|ref|YP_003758641.1| ribosome recycling factor [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527852|gb|ADJ26320.1| ribosome recycling factor [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 186
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I L REL +RTGRAS +++H+ V+ G P++HLA VSV +++ L I P+D
Sbjct: 14 MGISIEVLHRELGAIRTGRASTAIIEHVQVDYAGTPTPIHHLANVSVPNARMLLIQPWDR 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+ S LGL P DGQ + +IP L++E + ++VAK ED K +IR R
Sbjct: 74 TMMGPIEKAIMKSDLGLTPSNDGQVIRLSIPPLSQERRLELTRMVAKRVEDDKVAIRNLR 133
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ALD +KK L +D+ +R + + +LT Y+ AD++ K K++E+
Sbjct: 134 REALDHLKKMEKDKELSQDESRRAQDALQKLTDSYIAKADELGKQKDEEL 183
>gi|222152659|ref|YP_002561834.1| ribosome recycling factor [Streptococcus uberis 0140J]
gi|254809534|sp|B9DRF1.1|RRF_STRU0 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|222113470|emb|CAR41195.1| ribosome recycling factor [Streptococcus uberis 0140J]
Length = 185
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
E + +LSRE +R GRA+ +LD I VE GV PLN LA ++V +++ L I+P+D
Sbjct: 13 FEQSFQSLSREYASIRAGRANASLLDRIQVEYYGVPTPLNQLASITVPEARVLLISPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++K++E AI +S LG+ P DG + IPALT+E + + K V K E+ K +IR R
Sbjct: 73 SSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENQKIAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D KK + +D++K LEK+I + T + +K D + KEKE+
Sbjct: 133 RDAMDEAKKQEKNKEITEDELKALEKDIQKATDQAIKHIDGMTSEKEKEL 182
>gi|344203134|ref|YP_004788277.1| ribosome-recycling factor [Muricauda ruestringensis DSM 13258]
gi|343955056|gb|AEM70855.1| Ribosome-recycling factor [Muricauda ruestringensis DSM 13258]
Length = 184
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 102/168 (60%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEA+I L + LTK+R G+ASP ML ++V+ G + PL+ ++ ++ D++TLS+ P++
Sbjct: 16 MEASIEHLQKALTKIRAGKASPMMLSTVMVDYYGSQTPLSQVSNINTPDARTLSVQPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L E+E AI+++ LG NP +G+ +I +P LT+E + K +ED K SIR +R
Sbjct: 76 NLLGEIETAIMNANLGFNPMNNGEMVIINVPPLTEERRIQLTKQAKAEAEDAKVSIRSAR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q+A +K + +D +K E ++ ELT KY D I KE EI
Sbjct: 136 QEANKELK--ALDISEDLLKNAEVDVQELTNKYSDRVDAILTTKEAEI 181
>gi|372210236|ref|ZP_09498038.1| ribosome recycling factor [Flavobacteriaceae bacterium S85]
Length = 184
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 105/168 (62%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI L +E + +R G+ASP ML ++V+ G K PL+ +A V+ D++T+++ P++
Sbjct: 16 MENAIAHLVKEFSNIRAGKASPAMLGSVMVDYYGSKTPLSQVANVNTPDAQTITVQPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + E+E I+++ LG NP +G+ +I +PALT+E + + K +E K S+R R
Sbjct: 76 NMIPEIEKGIMNANLGFNPMNNGENIIINVPALTEERRKELSKQAKAEAEHAKVSVRNIR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A + +KK + + +D+ K E+++ +LT KY+K D++ K+ EI
Sbjct: 136 RDANNDIKK--TDISEDEQKGAEQDVQDLTDKYIKKIDELYTVKDAEI 181
>gi|313677103|ref|YP_004055099.1| ribosome recycling factor [Marivirga tractuosa DSM 4126]
gi|312943801|gb|ADR22991.1| ribosome recycling factor [Marivirga tractuosa DSM 4126]
Length = 186
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI L K+R G+ASP MLD ++V+ G P+N +A +S D++++ I P++
Sbjct: 15 MEKAIQHTKSNLQKIRAGKASPAMLDGLMVDYYGNDTPINQVASISTPDARSIIIKPWEK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + E+E AI++S LG P+ DG+ + IP LT+E ++ K +ED K SIR +R
Sbjct: 75 NIIGEIERAIINSDLGFTPQNDGEIVRINIPPLTEERRISLTKQAKNEAEDGKISIRNAR 134
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K+ + +D +KR E ++ LT + K DDI + KEKEI
Sbjct: 135 KDANDQLKQLQKEGISEDDVKRGEDKVQSLTNDFTKKIDDILEHKEKEI 183
>gi|22297803|ref|NP_681050.1| ribosome recycling factor [Thermosynechococcus elongatus BP-1]
gi|34222747|sp|Q8DM64.1|RRF_THEEB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|22293980|dbj|BAC07812.1| ribosome releasing factor [Thermosynechococcus elongatus BP-1]
Length = 182
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ A + +RTGRA+ +LD ++V+ G + PL LA VS D+ T+ I PYD
Sbjct: 10 MQKSVEATQHDFNSIRTGRANAALLDRVMVDYYGTETPLRSLANVSTPDATTILIQPYDR 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TL +E AI S LGL P DG + IP LT E + + K AK +E K +IR R
Sbjct: 70 STLASIEKAIQLSDLGLTPNNDGSSVRLNIPPLTTERRKELVKTAAKIAEGGKVAIRNIR 129
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KKAG + L +D++K L++++ +LT KY+ D + KEK+I
Sbjct: 130 RDAIDHIKKAGKAGELTEDEVKDLQEKVQKLTDKYIGKIDALLAEKEKDI 179
>gi|237785749|ref|YP_002906454.1| ribosome recycling factor [Corynebacterium kroppenstedtii DSM
44385]
gi|259494536|sp|C4LJA6.1|RRF_CORK4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|237758661|gb|ACR17911.1| Ribosome recycling factor [Corynebacterium kroppenstedtii DSM
44385]
Length = 185
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 101/168 (60%), Gaps = 3/168 (1%)
Query: 6 VALSRE-LTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLK 64
V +RE LT +RTGRA+P M + + E GV P+ +A +SV + + L I PY+P+ +
Sbjct: 17 VEYAREDLTTIRTGRANPSMFNGVQAEYYGVMTPITQMATISVPEPRMLLIKPYEPSIMN 76
Query: 65 ELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKAL 124
+E AI +S LG+NP DGQ L +P LT+E + M ++ ED + +IR R+K +
Sbjct: 77 AIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRKEMVRLAKSKGEDARIAIRNIRRKGM 136
Query: 125 DMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
D +K+ +D+++ EKE+D+ T +YV D + +AKEKE+ E
Sbjct: 137 DELKRIQKDGEAGEDEVQAAEKELDKTTHEYVSQVDKLIEAKEKELME 184
>gi|89068188|ref|ZP_01155598.1| ribosome recycling factor [Oceanicola granulosus HTCC2516]
gi|89046105|gb|EAR52163.1| ribosome recycling factor [Oceanicola granulosus HTCC2516]
Length = 186
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 98/168 (58%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + L E LRTGRAS ML+ + VE G P+N + V+V + + ++IN +D
Sbjct: 16 MDGTMNNLRTEFASLRTGRASASMLEPVQVEAYGQMTPINQVGTVNVPEPRMVTINVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI S LG+NP+++G ++ IP L +E + + KV + +E + SIR R
Sbjct: 76 GLVNKVEKAIRESGLGINPQMNGTIIMLPIPELNEERRRELTKVAGQYAEHARVSIRNVR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA + +D K E E+ E+T KY+KS DD + K+ EI
Sbjct: 136 RDGMDQIKKAADGMAEDDRKLWEAEVQEMTDKYIKSVDDALEHKQAEI 183
>gi|303247584|ref|ZP_07333855.1| ribosome recycling factor [Desulfovibrio fructosovorans JJ]
gi|302491064|gb|EFL50958.1| ribosome recycling factor [Desulfovibrio fructosovorans JJ]
Length = 184
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +L +E +LRTGRA+ +LD I V+ G PL+ +A VS DS+T++I P+D
Sbjct: 12 MQKALASLDKEFARLRTGRATTSLLDGIRVDYYGTPTPLDQMASVSTPDSRTITIAPWDR 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++E AI+ S LGL P DG+ + +IP LT++ + + KV K +E+ K +IR R
Sbjct: 72 KAFHDVEKAILKSDLGLTPVNDGKIIRISIPPLTEDRRKDLAKVAKKYAEEAKVAIRNIR 131
Query: 121 QKALDMMKKAGS--SLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + ++ +D + ++++ +LT Y+ ADD KEKEI E
Sbjct: 132 RDANDALKKKKNDKAISEDDQHKGQEDVQKLTDAYIAKADDALAKKEKEIME 183
>gi|322388009|ref|ZP_08061616.1| ribosome recycling factor [Streptococcus infantis ATCC 700779]
gi|419844260|ref|ZP_14367558.1| ribosome recycling factor [Streptococcus infantis ATCC 700779]
gi|321141282|gb|EFX36780.1| ribosome recycling factor [Streptococcus infantis ATCC 700779]
gi|385702044|gb|EIG39196.1| ribosome recycling factor [Streptococcus infantis ATCC 700779]
Length = 185
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+LSRE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D +LK++
Sbjct: 19 SLSREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKTSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I + T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKATDDAVKHIDDMTANKEKELLE 184
>gi|227497536|ref|ZP_03927764.1| ribosome recycling factor [Actinomyces urogenitalis DSM 15434]
gi|226832990|gb|EEH65373.1| ribosome recycling factor [Actinomyces urogenitalis DSM 15434]
Length = 185
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 106/173 (61%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEAA+ A REL +RTGRA+P M + I+V+ G PL LA +++ +++T+ ++P+D
Sbjct: 13 MEAALDAAKRELAAIRTGRANPSMFNSIVVDYYGAPTPLQQLASITIPEARTVIVSPFDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
+KE+ AI S LG+NP DG + +PALT+E + K+ +E+ + + IR
Sbjct: 73 GAMKEITSAIRESDLGVNPTDDGTVIRVTLPALTEERRKDYVKLARSRAEESRIQVRGIR 132
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K L+ +KK G + +D +KR E ++D LTK++V+S D AKE E+ E
Sbjct: 133 GKSKKELEAIKKDGEA-GEDDVKRAEGDLDALTKRFVESIDAALTAKEAELLE 184
>gi|126654121|ref|ZP_01725939.1| Frr [Bacillus sp. B14905]
gi|126589401|gb|EAZ83551.1| Frr [Bacillus sp. B14905]
Length = 185
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I A +REL+ +R GRA+ +LD I+V+ G P+N LA VSV +++ L I PYD
Sbjct: 13 MNKTIAAFTRELSSIRAGRANASLLDRIMVDYYGAPTPINQLAGVSVPEARLLVITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+E AI+ S +G+ P DG + IPALT+E + + K V K +ED K ++R R
Sbjct: 73 TILGEIEKAIMKSDIGITPTNDGSIIRLMIPALTEERRKDLVKQVKKEAEDAKIAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D ++ +I +LT +++ D + K KEKEI E
Sbjct: 133 RDANDDLKKLEKAGEITEDDLRGYGDDIQKLTDEFIVKVDQVTKDKEKEILE 184
>gi|332686704|ref|YP_004456478.1| ribosome recycling factor [Melissococcus plutonius ATCC 35311]
gi|379727294|ref|YP_005319479.1| ribosome recycling factor [Melissococcus plutonius DAT561]
gi|332370713|dbj|BAK21669.1| ribosome recycling factor [Melissococcus plutonius ATCC 35311]
gi|376318197|dbj|BAL61984.1| ribosome recycling factor [Melissococcus plutonius DAT561]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A L REL ++R GRA+ +LD I VE GV P+N LA +S+ +++ L I P+D
Sbjct: 13 MKKAEQNLQRELGQIRAGRANASLLDRIQVEYYGVMTPVNQLATISIPEARILMITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N++K++E AI +S +G++P DG + IP LT+E + + K V K +E+ K ++R R
Sbjct: 73 NSIKDIERAIQASDIGISPTSDGNIIRLVIPQLTEERRKELAKEVKKEAENAKIAVRNIR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KK + + +D++ EK++ +LT +K+ D+I KE EI
Sbjct: 133 RDTMDTLKKQNKNGDITEDELHTSEKDVQQLTDNSIKNLDNIASEKEAEI 182
>gi|339009412|ref|ZP_08641984.1| ribosome-recycling factor [Brevibacillus laterosporus LMG 15441]
gi|338773890|gb|EGP33421.1| ribosome-recycling factor [Brevibacillus laterosporus LMG 15441]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI L ++L LR GRA+P MLD I+V+ G P+N LA V + + L + P+D
Sbjct: 13 MSKAIQTLKKDLATLRAGRATPAMLDKIMVDYYGTPTPINQLANVVAPEPRMLQVQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LK+++ AI+ S +GL P DG + A+P LT+E + + KV K ED K +IR R
Sbjct: 73 NALKDIDKAIMQSDIGLTPTNDGSVIRIAVPPLTEERRRDLVKVANKNGEDAKVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK +S+ +D+ + ++ + + T K++ D I K KEK+I E
Sbjct: 133 RDANDGIKKLEKAASISEDESRGHQETVQKTTDKFIAEVDKIVKDKEKDILE 184
>gi|399055565|ref|ZP_10743260.1| ribosome recycling factor [Brevibacillus sp. CF112]
gi|433546020|ref|ZP_20502358.1| ribosome recycling factor [Brevibacillus agri BAB-2500]
gi|398046774|gb|EJL39358.1| ribosome recycling factor [Brevibacillus sp. CF112]
gi|432182636|gb|ELK40199.1| ribosome recycling factor [Brevibacillus agri BAB-2500]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI+AL ++L+ LR GRA+P MLD ++V+ G P++ LA +SV + + L+I P+D
Sbjct: 13 MNKAILALKKDLSSLRAGRANPAMLDRVMVDYYGTPTPISQLANISVPEPRMLTIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LKE++ A+ S LG++P DG + IP LT+E + + K+ +K E+ K +IR R
Sbjct: 73 TALKEIDRALQQSDLGISPSNDGVIIRLVIPPLTEERRKELVKLASKGGEEAKVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK +++ +D+ +R ++ I + T K++ D I K KEK+I E
Sbjct: 133 RDANDEIKKLEKAATISEDESRRHQETIQKTTDKFIAEVDKIVKDKEKDILE 184
>gi|350566743|ref|ZP_08935386.1| ribosome recycling factor [Peptoniphilus indolicus ATCC 29427]
gi|348661733|gb|EGY78411.1| ribosome recycling factor [Peptoniphilus indolicus ATCC 29427]
Length = 202
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I +L +R GRA+P +LD I ++ G PLN +A +S + + L+I P+D
Sbjct: 30 MSKSISVYKEDLQSIRAGRANPTLLDKIAIDYYGQTTPLNQIAGISAPEPRLLAIQPWDA 89
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
NT+ E+E AI+ S LG+ P DG+ + IP LT+E + + KVV K SE+ K ++R R
Sbjct: 90 NTIPEIEKAILKSDLGITPSNDGKIVRLVIPQLTEERRKDLIKVVKKNSENAKVALRNIR 149
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ +++ +KK S + +D KR E EI ++T KY++ D I K KE E+ E
Sbjct: 150 RDSMEEIKKLEKSNEITEDDRKRAEDEIQKITDKYIEEVDKITKDKESELLE 201
>gi|318056584|ref|ZP_07975307.1| ribosome recycling factor [Streptomyces sp. SA3_actG]
gi|318075679|ref|ZP_07983011.1| ribosome recycling factor [Streptomyces sp. SA3_actF]
gi|333024152|ref|ZP_08452216.1| putative ribosome recycling factor [Streptomyces sp. Tu6071]
gi|332744004|gb|EGJ74445.1| putative ribosome recycling factor [Streptomyces sp. Tu6071]
Length = 186
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 95/172 (55%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V +L +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 14 MEKAVVVAKEDLAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV ED + SIR R
Sbjct: 74 SALRNIEQAIRDSDLGVNPSNDGHIIRVVFPELTEERRKEFIKVARTKGEDARVSIRAVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K +D+++R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 134 RKAKDALDKLVKDKETGEDEVRRAEKELDDTTAKYVAQVDELLKHKESELLE 185
>gi|399923806|ref|ZP_10781164.1| ribosome recycling factor [Peptoniphilus rhinitidis 1-13]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ +LS L +R GRA+ +LD I V+ G + PLN +A +S + + L+I P+D
Sbjct: 13 MQKSVSSLSESLQSIRAGRANTSLLDKIFVDYYGQQTPLNQVASLSAPEPRLLAIQPWDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + ++E AI+ S LG+ P DG+ + IP LT+E + + K+V K +E+ K S+R R
Sbjct: 73 NLIPDIEKAILKSDLGITPSNDGKVIRLVIPQLTEERRKDLTKLVGKDAEEAKVSVRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A++ +KKA + +D E++I +LT KY+K D + ++KEKE+ E
Sbjct: 133 RDAMEDIKKAEKAKEISEDDKVSFEEDIQKLTDKYIKEIDKVAESKEKELME 184
>gi|254443219|ref|ZP_05056695.1| ribosome recycling factor [Verrucomicrobiae bacterium DG1235]
gi|198257527|gb|EDY81835.1| ribosome recycling factor [Verrucomicrobiae bacterium DG1235]
Length = 186
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
+E AI + E + TG+A+PGM++ I VE G +M L +A ++ D++T++I P+D
Sbjct: 14 VEKAIEHTANEFAGVNTGKANPGMVEGISVEAYGSQMSLKEMAAITTPDARTIAIQPWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AI++S +G+ P + G + +P LT E Q++ KVV+K +ED + +IR SR
Sbjct: 74 SVIKAIEKAILTSNIGITPAIMGDVIRLPLPELTGERRQSLVKVVSKQAEDGRVAIRNSR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK + +D +KR EK+I T + +K +D+ AKEK++
Sbjct: 134 RDAMDAIKKLQKDGDISEDDLKRCEKDIQNTTDESIKKINDLLAAKEKDL 183
>gi|373465591|ref|ZP_09557046.1| ribosome recycling factor [Lactobacillus kisonensis F0435]
gi|371759841|gb|EHO48548.1| ribosome recycling factor [Lactobacillus kisonensis F0435]
Length = 187
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 104/173 (60%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A L REL K+R GRA+ +L+ ++V G PLN +A +++ +++ + I PYD
Sbjct: 15 MKKAQEVLERELGKIRAGRANASLLNGVMVNYYGAPTPLNQIASITIPEARVILITPYDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+++E I + LGL+P DG + AIPALT+E + + K V T ED K +IR R
Sbjct: 75 SALEDIEKGIYEADLGLSPANDGTAIRLAIPALTEERRKEVAKQVKATGEDSKVAIRNVR 134
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
++A+D +K++ + + D++ R E ++ +LT +KS D I KE E+ G
Sbjct: 135 REAMDTLKRSNKNEDITDDELHRFEDQVQKLTDSSIKSVDGIVSDKEDEVING 187
>gi|403386836|ref|ZP_10928893.1| ribosome recycling factor [Clostridium sp. JC122]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M + L EL+ ++ GRA+P MLD I VE G +PLN +A +S +++ L I P+D
Sbjct: 13 MTKTLTVLKGELSTMKAGRANPKMLDRIEVECYGSMVPLNQVANISAPEARVLLIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK++E AI+ S LGLNP DG + IP LT+E + + K + K ED K ++R R
Sbjct: 73 SSLKDIEKAILKSDLGLNPTSDGAVIRLMIPELTEETRKNLVKNIKKVGEDAKVAVRSIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K K + +D+ K+ E I + T KYVK D I AKEKE+
Sbjct: 133 RDANDKIKALKKDGEITEDEAKKSEDSIQKETDKYVKEIDTIVAAKEKEV 182
>gi|433608821|ref|YP_007041190.1| Ribosome-recycling factor [Saccharothrix espanaensis DSM 44229]
gi|407886674|emb|CCH34317.1| Ribosome-recycling factor [Saccharothrix espanaensis DSM 44229]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +RTGRA+P M I+VE G PLN LA V++ +++ + PYD
Sbjct: 13 MEKAVSVAKEDLAAVRTGRATPSMFSRIVVEYYGSPTPLNQLASVAIPEARMAVVKPYDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L ++E AI S LG+NP DG + IP L++E + M KV ED K SIR R
Sbjct: 73 SQLNQVEKAIRDSDLGVNPSNDGAVIRVVIPQLSEERRREMVKVAKSKGEDAKVSIRNIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D R EKE++ +T +YV D++ K KE E+ E
Sbjct: 133 RKAKEELDRLVKDG-EVGEDDGSRGEKELENVTHRYVAQVDELVKHKEAELLE 184
>gi|302558125|ref|ZP_07310467.1| ribosome recycling factor [Streptomyces griseoflavus Tu4000]
gi|302475743|gb|EFL38836.1| ribosome recycling factor [Streptomyces griseoflavus Tu4000]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV +ED K SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVAKAKAEDAKVSIRSVR 132
Query: 121 QK---ALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K A+D M K G + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKDAIDKMIKDG-EVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|295836271|ref|ZP_06823204.1| ribosome recycling factor [Streptomyces sp. SPB74]
gi|302522178|ref|ZP_07274520.1| ribosome recycling factor [Streptomyces sp. SPB78]
gi|197697364|gb|EDY44297.1| ribosome recycling factor [Streptomyces sp. SPB74]
gi|302431073|gb|EFL02889.1| ribosome recycling factor [Streptomyces sp. SPB78]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 95/172 (55%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V +L +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDLAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV ED + SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGHIIRVVFPELTEERRKEFIKVARTKGEDARVSIRAVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K +D+++R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKDALDKLVKDKETGEDEVRRAEKELDDTTAKYVAQVDELLKHKESELLE 184
>gi|291542738|emb|CBL15848.1| ribosome recycling factor [Ruminococcus bromii L2-63]
Length = 184
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + + E +++R GRA+P +LD + V+ G P+N LA VSV +++TL+I P+D
Sbjct: 12 MDRRLEHMRTEFSEIRAGRANPAVLDKVKVDYYGAPTPVNQLAAVSVTEARTLTIQPWDA 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+++E AI +S +G+NP+ DG+ + P LT++ + + K V K +E+ K IR R
Sbjct: 72 SVLRQIEKAIQTSDIGINPQNDGKIIRLIFPPLTEDRRKEIVKDVQKIAEETKIQIRNVR 131
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++ +D +K K L +D +K+ EK+ +LT KYVK + + K+KEI E
Sbjct: 132 RELIDKLKAMKKDGELTEDDLKQGEKKAQDLTDKYVKEVESVSAVKQKEILE 183
>gi|325962762|ref|YP_004240668.1| ribosome recycling factor [Arthrobacter phenanthrenivorans Sphe3]
gi|323468849|gb|ADX72534.1| ribosome recycling factor [Arthrobacter phenanthrenivorans Sphe3]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ + +RTGRA+PG+ + ++VE G PL LA ++ D++T+ I P+D
Sbjct: 13 MDKAVEVAKEDFASVRTGRANPGLYNKVLVEYYGSPTPLQQLASFAIPDARTILITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+++E A+ S +G NP DG + IP LTKE + K+V ED K SIR R
Sbjct: 73 TALRDIERALSDSEVGANPSNDGNVIRITIPELTKERRKEYVKIVKTKGEDAKVSIRNIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D+ R EKE+D LTK +V D++ K KE E+ E
Sbjct: 133 RKAKETLDRLVKDGEA-GEDEGTRAEKELDNLTKAHVDGIDELLKRKEAELLE 184
>gi|295111329|emb|CBL28079.1| ribosome recycling factor [Synergistetes bacterium SGP1]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L E +RTGRA PG++ I ++ G PL +A +++ +S+T+ I P+D
Sbjct: 13 MDKAIDFLQNEYLSIRTGRAHPGLVSDIKLDYYGTPTPLKQIANITIPESRTIQIAPFDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+LK +E AI+++ +G+ P+ DG + +P LT+E + K++AK +ED + +R R
Sbjct: 73 TSLKAIEKAILAANIGMTPQNDGASIRLTLPELTRERRVELTKLLAKKAEDARVVVRNYR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A++ +KK S + +D +K L K + + T YVK D+I KAKEKE+ E
Sbjct: 133 RDAIESLKKQEKASEITEDDLKTLTKGVQDKTDAYVKKVDEIYKAKEKEVLE 184
>gi|309791083|ref|ZP_07685618.1| ribosome recycling factor [Oscillochloris trichoides DG-6]
gi|308226867|gb|EFO80560.1| ribosome recycling factor [Oscillochloris trichoides DG6]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A AL L +RTGRAS GM++H+ VE G MPLN LA +SV +S+ + I P+D
Sbjct: 13 MRKATEALKHHLATIRTGRASSGMVEHLQVEAYGTHMPLNQLANISVPESRLIVIQPFDN 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+K +E AI +S L +NP DG+ + A+P LT+E + M K+V E+VK S+R R
Sbjct: 73 GMIKIIEKAIQNSDLSINPSNDGRVIRLAVPQLTEERRREMVKMVRHRVEEVKISVRNQR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +K+ + +D + R ++ I +LT++ K D I KE E+
Sbjct: 133 RDAIDDLKQLEEEKLISEDDLHRGQERIQQLTERTSKDLDQIGSEKEAEV 182
>gi|68536249|ref|YP_250954.1| ribosome recycling factor [Corynebacterium jeikeium K411]
gi|260578949|ref|ZP_05846852.1| ribosome recycling factor [Corynebacterium jeikeium ATCC 43734]
gi|123650872|sp|Q4JV21.1|RRF_CORJK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|68263848|emb|CAI37336.1| frr [Corynebacterium jeikeium K411]
gi|258602923|gb|EEW16197.1| ribosome recycling factor [Corynebacterium jeikeium ATCC 43734]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +++ +LT +RTGRA+P M + ++ E GV P+ +A +SV + + L I PY+
Sbjct: 13 MTSSVEHAREDLTTIRTGRANPSMFNGVVAEYYGVPTPITQMATISVPEPRMLLIKPYEQ 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+T+ +E AI +S LG+NP DGQ L IP LT+E + M KV ED K +IR R
Sbjct: 73 STMDAIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKEMVKVAKSKGEDAKIAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K ++ + K +D+++ EK+++++T YV+ D + +AKEKE+ E
Sbjct: 133 RKGMEQLGKIQKDGEAGEDEVRAAEKDLEKITHSYVEQVDSLVEAKEKELLE 184
>gi|385809285|ref|YP_005845681.1| ribosome recycling factor [Ignavibacterium album JCM 16511]
gi|383801333|gb|AFH48413.1| Ribosome recycling factor [Ignavibacterium album JCM 16511]
Length = 184
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + L EL K+RTG+A+ +LD I V+ G PLN + ++VLD+ TLSI P+D
Sbjct: 12 MDKTLETLRAELAKVRTGKATTALLDGIKVDYYGNMTPLNQVGNLTVLDAHTLSITPWDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI+ + LG NP DG + +P LT+E + K+V K ED K +IR R
Sbjct: 72 SMVPVIEKAILEANLGFNPVSDGTNIKIPVPPLTEERRKDFVKIVKKFGEDAKIAIRNVR 131
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + +KK + +D++K E E+ +LT +++K DD+ K KEKEI E
Sbjct: 132 RDANEHLKKEQKDKKMSEDELKIAEDEVQKLTNQHIKLIDDLLKHKEKEIME 183
>gi|297566374|ref|YP_003685346.1| ribosome recycling factor [Meiothermus silvanus DSM 9946]
gi|296850823|gb|ADH63838.1| ribosome recycling factor [Meiothermus silvanus DSM 9946]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 100/173 (57%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ AL L+ LRTGRA+P +L I V+ G MP+ L ++ D++TL I +D
Sbjct: 13 MQKALDALEHHLSGLRTGRANPAILKSIRVDYYGSLMPIEQLGTITAPDARTLVIQSWDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LK +E AI S LGLNP G L +IP LT+E + + K V +E+ + ++R +R
Sbjct: 73 GALKSIEKAIRDSDLGLNPNNKGDSLFISIPPLTEERRRELVKAVKHYAEEARVAVRNAR 132
Query: 121 QKALDMMKKAG--SSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
++A+D KK G L +D +KR E EI ++T +++ D + KE EI G
Sbjct: 133 REAVDKAKKLGKEQHLSEDDIKRAEAEIQKITDEFIGKVDSALEKKEHEILGG 185
>gi|419767496|ref|ZP_14293649.1| ribosome recycling factor [Streptococcus mitis SK579]
gi|383353039|gb|EID30666.1| ribosome recycling factor [Streptococcus mitis SK579]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD + VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRVYVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|419778926|ref|ZP_14304807.1| ribosome recycling factor [Streptococcus oralis SK10]
gi|383186690|gb|EIC79155.1| ribosome recycling factor [Streptococcus oralis SK10]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD + VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRVYVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK I + T VK DD+ KEKEI E
Sbjct: 139 AKKQEKAKEITEDELKTLEKNIQKATDDAVKHIDDMTANKEKEILE 184
>gi|149183486|ref|ZP_01861915.1| ribosome recycling factor [Bacillus sp. SG-1]
gi|148848798|gb|EDL63019.1| ribosome recycling factor [Bacillus sp. SG-1]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 98/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI +REL +R GRA+ +LD I V+ G P+N LA +SV +++ L I PYD
Sbjct: 13 MTKAIQTFTRELASIRAGRANASLLDKITVDYYGAPTPVNQLAGISVPEARMLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L ++E AI+ S LG+ P DG L IP LT+E + + K+V K SED K +IR R
Sbjct: 73 SALGDIEKAIMKSDLGITPSSDGNILRIVIPQLTEERRKDLVKLVKKESEDAKVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D KK + +D ++ ++ +LT ++ D I K KEKEI E
Sbjct: 133 RDANDEFKKLEKNGDITEDDLRGYSDDVQKLTDDHINQIDSIAKDKEKEILE 184
>gi|315221842|ref|ZP_07863754.1| ribosome recycling factor [Streptococcus anginosus F0211]
gi|315189075|gb|EFU22778.1| ribosome recycling factor [Streptococcus anginosus F0211]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 106/166 (63%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D +++K++
Sbjct: 19 SLAREFGSIRAGRANASLLDRISVEYYGVETPLNQIASITIPEARVLLVTPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 EHALNASDLGITPASDGTVIRLVIPALTEETRRNLAKEVKKVGENAKIAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T + VK D++ +KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDEAVKHIDEMTASKEKELIE 184
>gi|406940476|gb|EKD73223.1| hypothetical protein ACD_45C00396G0001 [uncultured bacterium]
Length = 185
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 109/170 (64%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I A E++K+RTGRA P +L+HI V+ G ++PL+ +A V++ D++TL I+P++
Sbjct: 13 MRKSIDAFKYEMSKMRTGRAHPSLLEHIRVDYYGTQVPLSQVANVTIGDARTLVISPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+E AI++S LGLNP G+ + +PALT+E + + K+V + +E + SIR +R
Sbjct: 73 RMTSIIEKAIMTSDLGLNPVTSGELIRVPLPALTEERRKELIKIVRQEAETARVSIRNAR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A + +K+A + +D+ +RL + I +LT K++ + + AKEK++
Sbjct: 133 RDANNTLKEALRKKEMAEDEERRLTESIQKLTDKFISEVEQLLTAKEKDL 182
>gi|326693032|ref|ZP_08230037.1| ribosome recycling factor [Leuconostoc argentinum KCTC 3773]
gi|339449759|ref|ZP_08653129.1| ribosome recycling factor [Leuconostoc lactis KCTC 3528]
Length = 181
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 100/168 (59%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL REL +RTGRA+P +LD I VE G PLN +A +SV +++ L I P+D
Sbjct: 12 MQGAQDALQRELGSIRTGRANPRILDRIEVEYYGAMTPLNQVASISVPEARILLITPFDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L E+ AI S LGLNP DG + AIP +T+E + + K V +E K S+R R
Sbjct: 72 SVLDEIIRAINMSDLGLNPASDGNIVRLAIPQMTEEGRKELAKQVKAEAEKAKVSVRNVR 131
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK LP+D ++ E I +LT +K+ D I KEKE+
Sbjct: 132 RDAMDSVKK-DKELPEDVARKAEDAIQKLTDDNIKAIDAIAAEKEKEL 178
>gi|306825442|ref|ZP_07458782.1| ribosome recycling factor [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304432380|gb|EFM35356.1| ribosome recycling factor [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 185
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|22537655|ref|NP_688506.1| ribosome recycling factor [Streptococcus agalactiae 2603V/R]
gi|25011612|ref|NP_736007.1| ribosome recycling factor [Streptococcus agalactiae NEM316]
gi|76788564|ref|YP_330142.1| ribosome recycling factor [Streptococcus agalactiae A909]
gi|76799120|ref|ZP_00781307.1| ribosome recycling factor [Streptococcus agalactiae 18RS21]
gi|77405174|ref|ZP_00782272.1| ribosome recycling factor [Streptococcus agalactiae H36B]
gi|77411699|ref|ZP_00788038.1| ribosome recycling factor [Streptococcus agalactiae CJB111]
gi|77413972|ref|ZP_00790145.1| ribosome recycling factor [Streptococcus agalactiae 515]
gi|339301080|ref|ZP_08650202.1| ribosome recycling factor [Streptococcus agalactiae ATCC 13813]
gi|406709898|ref|YP_006764624.1| ribosome recycling factor [Streptococcus agalactiae GD201008-001]
gi|417005914|ref|ZP_11944484.1| ribosome recycling factor [Streptococcus agalactiae FSL S3-026]
gi|421147181|ref|ZP_15606872.1| ribosome recycling factor [Streptococcus agalactiae GB00112]
gi|424049039|ref|ZP_17786590.1| ribosome recycling factor [Streptococcus agalactiae ZQ0910]
gi|54039298|sp|P66741.1|RRF_STRA5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|54042006|sp|P66740.1|RRF_STRA3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|123601478|sp|Q3K011.1|RRF_STRA1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|22534542|gb|AAN00379.1|AE014261_7 ribosome recycling factor [Streptococcus agalactiae 2603V/R]
gi|24413152|emb|CAD47230.1| ribosome recycling factor [Streptococcus agalactiae NEM316]
gi|76563621|gb|ABA46205.1| ribosome recycling factor [Streptococcus agalactiae A909]
gi|76585524|gb|EAO62095.1| ribosome recycling factor [Streptococcus agalactiae 18RS21]
gi|77159952|gb|EAO71090.1| ribosome recycling factor [Streptococcus agalactiae 515]
gi|77162271|gb|EAO73243.1| ribosome recycling factor [Streptococcus agalactiae CJB111]
gi|77176176|gb|EAO78947.1| ribosome recycling factor [Streptococcus agalactiae H36B]
gi|319745486|gb|EFV97790.1| ribosome recycling factor [Streptococcus agalactiae ATCC 13813]
gi|341576095|gb|EGS26506.1| ribosome recycling factor [Streptococcus agalactiae FSL S3-026]
gi|389649239|gb|EIM70721.1| ribosome recycling factor [Streptococcus agalactiae ZQ0910]
gi|401686126|gb|EJS82115.1| ribosome recycling factor [Streptococcus agalactiae GB00112]
gi|406650783|gb|AFS46184.1| ribosome recycling factor [Streptococcus agalactiae GD201008-001]
Length = 185
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
E + +LSRE +R GRA+ +LD I VE G PLN LA ++V +++ L I+P+D
Sbjct: 13 FEQSHQSLSREFAGIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++K++E AI S LG+NP DG + IPALT+E + + K V K E+ K +IR R
Sbjct: 73 SSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D KK + +D +K LEK+I + T VK D++ KEKE+
Sbjct: 133 RDAMDEAKKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEMTANKEKEL 182
>gi|387138904|ref|YP_005694883.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|389850659|ref|YP_006352894.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
258]
gi|349735382|gb|AEQ06860.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|388247965|gb|AFK16956.1| Ribosome-recycling factor (RRF) [Corynebacterium pseudotuberculosis
258]
Length = 185
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 11 ELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAI 70
+L +RTGRA+P M + +I + GV P+ +A +SV +++ L I PY+ + + ++E AI
Sbjct: 23 DLVNIRTGRANPAMFNGVIADYYGVPTPITQMAAISVPEARMLLIKPYEMSMMGKIENAI 82
Query: 71 VSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK- 129
+S LG+NP DGQ L +P LT+E + M KV ED K +IR R+K +D +KK
Sbjct: 83 RNSDLGVNPTNDGQVLRVTVPQLTEERRKEMVKVAKSKGEDGKIAIRNVRRKGMDQLKKI 142
Query: 130 -AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+D+++ EKE+D++T KYV D++ KE E+ E
Sbjct: 143 QKDGDAGEDEVQAAEKELDKITAKYVAQVDEVVSKKEAELME 184
>gi|291436992|ref|ZP_06576382.1| ribosome recycling factor [Streptomyces ghanaensis ATCC 14672]
gi|291339887|gb|EFE66843.1| ribosome recycling factor [Streptomyces ghanaensis ATCC 14672]
Length = 185
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV ED K SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREFIKVAKAKGEDAKVSIRAVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKDAIDKLIKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|414158286|ref|ZP_11414580.1| ribosome-recycling factor [Streptococcus sp. F0441]
gi|410870831|gb|EKS18788.1| ribosome-recycling factor [Streptococcus sp. F0441]
Length = 185
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|398782167|ref|ZP_10545985.1| ribosome recycling factor [Streptomyces auratus AGR0001]
gi|396996904|gb|EJJ07883.1| ribosome recycling factor [Streptomyces auratus AGR0001]
Length = 185
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAMTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV ED K SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTEERRKEFIKVAKNKGEDAKISIRSVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K S +D+++R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKETLDKLVKDKES-GEDEVRRAEKELDDTTAKYVAQVDELLKHKESELLE 184
>gi|372221632|ref|ZP_09500053.1| ribosome recycling factor [Mesoflavibacter zeaxanthinifaciens S86]
Length = 184
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+AA+ L + K+R G+ASP ML ++VE G + PL+ ++ ++ D +T+S+ P++
Sbjct: 16 MDAAMRHLEKSFVKIRAGKASPAMLSAVMVEYYGSQTPLSQVSNINTPDGRTISVQPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L E+E AI+++ LG NP +G+ +I +P LT+E + + K +ED K +R +R
Sbjct: 76 NLLGEIEKAIMNANLGFNPMNNGENIIINVPPLTEERRKELVKQAKAEAEDAKVGVRSAR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q A +KK L +D + E ++ ELT KY+K +D+ KE EI
Sbjct: 136 QDANKELKKL--DLSEDLLANAEVDVQELTDKYIKKIEDVLAIKEAEI 181
>gi|373857321|ref|ZP_09600063.1| ribosome recycling factor [Bacillus sp. 1NLA3E]
gi|372452971|gb|EHP26440.1| ribosome recycling factor [Bacillus sp. 1NLA3E]
Length = 185
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI A +REL +R GRA+ +LD + VE G P+N +A +SV +++ L I PYD
Sbjct: 13 MSKAISAYTRELASIRAGRANASLLDKLTVEYYGAPTPVNQIAGISVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L ++E AI+ S LGLNP DG + AIP LT+E + + KV+ + SE+ K ++R R
Sbjct: 73 TILGDIEKAILKSDLGLNPSNDGSIIRLAIPQLTEERRKELVKVIKRDSEEAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + +KK + +D+++ I +LT ++ D I K KEKEI E
Sbjct: 133 RDANEDLKKLEKNGDITEDELRGYNDNIQKLTDDHISKIDGITKDKEKEIME 184
>gi|407795711|ref|ZP_11142669.1| ribosome recycling factor [Salimicrobium sp. MJ3]
gi|407020052|gb|EKE32766.1| ribosome recycling factor [Salimicrobium sp. MJ3]
Length = 185
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A A S++L +R GRA+P +LD + V+ G PL LA VS + + L I PYD
Sbjct: 13 MKKATQAFSKQLATVRAGRANPSILDPVYVDYYGASTPLQQLAQVSAPEPRLLVITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI + LGL+P DG + IPALT+E + + K+V K +E+ K IR R
Sbjct: 73 SAISEVEKAIQKADLGLSPSSDGNVVRINIPALTQERRKDLTKLVKKYTEEAKVQIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++ D +KK L +D ++ + ++ +LT +YVK DD+ K KE+E+ E
Sbjct: 133 RETNDALKKNEKDGELTEDDLRSYQDDVQKLTDEYVKEIDDLSKQKEEEMLE 184
>gi|451944497|ref|YP_007465133.1| ribosome recycling factor [Corynebacterium halotolerans YIM 70093 =
DSM 44683]
gi|451903884|gb|AGF72771.1| ribosome recycling factor [Corynebacterium halotolerans YIM 70093 =
DSM 44683]
Length = 185
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A++ EL +RTGRA+P M + +I E GV P+ +A +SV + + L I PYD
Sbjct: 13 MTASVEHTREELVTIRTGRANPAMFNGVIAEFYGVPTPIPQMATISVPEPRMLLIKPYDM 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+T+ E+E AI +S LG+NP DGQ L IP LT+E + M K+ ED K +IR R
Sbjct: 73 STMNEVENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKLAKSKGEDGKIAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K ++ +KK +D++ EK++D+ T+ YV D++ KE E+ E
Sbjct: 133 RKGMEQLKKLQKDGDAGEDEVASAEKDLDKTTQTYVAQIDELVTRKEDELME 184
>gi|428214638|ref|YP_007087782.1| ribosome recycling factor [Oscillatoria acuminata PCC 6304]
gi|428003019|gb|AFY83862.1| ribosome recycling factor [Oscillatoria acuminata PCC 6304]
Length = 182
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A R +RTGRA+ +LD ++VE G PL LA ++ D+ T+SI P+D
Sbjct: 10 MKKAVEATQRSFNTIRTGRANTSLLDKVMVEYYGTPTPLKSLASINTPDASTISIQPFDR 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+L +E AI++S LGL P DG + IP LT + + KV K +E+ K +IR +R
Sbjct: 70 GSLAVIEKAILTSDLGLTPNNDGAIIRLNIPQLTSDRRLELVKVAGKYAEEGKVAIRNAR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D ++K S + +D+ + L+ +I +LT KYV D++ AKEK+I
Sbjct: 130 RDGIDSVRKQEKNSDISQDESRSLQDDIQKLTDKYVAKIDEVLAAKEKDI 179
>gi|227824516|ref|ZP_03989348.1| ribosome recycling factor [Acidaminococcus sp. D21]
gi|352684981|ref|YP_004896966.1| ribosome recycling factor [Acidaminococcus intestini RyC-MR95]
gi|226905015|gb|EEH90933.1| ribosome recycling factor [Acidaminococcus sp. D21]
gi|350279636|gb|AEQ22826.1| ribosome recycling factor [Acidaminococcus intestini RyC-MR95]
Length = 187
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +A+ AL EL +RTGRA+P +LD + V+ G P+N LA VSV + + + I P+D
Sbjct: 15 MTSALKALHTELAAIRTGRATPSLLDQVKVDYYGTATPVNQLANVSVPEPRMIVIQPWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +KE+E AI++S LGLNP DG + ++P LT+E + + KVV K E + ++R R
Sbjct: 75 SLMKEIEKAIMTSDLGLNPNNDGTVIRLSLPILTEERRKELVKVVHKKGESARVAVRNIR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ D +KK G + +D K +LT +Y+K DDI KEKE+
Sbjct: 135 REYNDAVKKLLKGKEITEDDSKDAMDASQKLTDQYMKQIDDILAKKEKEV 184
>gi|294631670|ref|ZP_06710230.1| ribosome recycling factor [Streptomyces sp. e14]
gi|292835003|gb|EFF93352.1| ribosome recycling factor [Streptomyces sp. e14]
Length = 185
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 93/172 (54%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT+E + KV ED K SIR R
Sbjct: 73 TALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKGKGEDAKVSIRSVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKDAIDKLVKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKESELLE 184
>gi|441145431|ref|ZP_20963740.1| ribosome recycling factor [Streptomyces rimosus subsp. rimosus ATCC
10970]
gi|440621051|gb|ELQ84072.1| ribosome recycling factor [Streptomyces rimosus subsp. rimosus ATCC
10970]
Length = 185
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAMTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
+ L+ +E AI S LG+NP DG + P LT+E + KV +ED K +SIR
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGHIIRVNFPELTEERRREFIKVAKNKAEDSKISIRSIR 132
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
R ++ALD + K S +D+++R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKEALDKLVKDKES-GEDEVRRAEKELDDTTAKYVAQVDELLKHKESELLE 184
>gi|386842812|ref|YP_006247870.1| ribosome recycling factor [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374103113|gb|AEY91997.1| ribosome recycling factor [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451796104|gb|AGF66153.1| ribosome recycling factor [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 185
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV ED K SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKGKGEDAKVSIRSVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKDAIDKLIKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|329936702|ref|ZP_08286409.1| ribosome recycling factor [Streptomyces griseoaurantiacus M045]
gi|329303932|gb|EGG47815.1| ribosome recycling factor [Streptomyces griseoaurantiacus M045]
Length = 185
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 93/172 (54%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT+E + KV ED K SIR R
Sbjct: 73 TALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKTKGEDAKISIRSVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKDAIDKLIKDGEIGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|302542189|ref|ZP_07294531.1| ribosome recycling factor [Streptomyces hygroscopicus ATCC 53653]
gi|302459807|gb|EFL22900.1| ribosome recycling factor [Streptomyces himastatinicus ATCC 53653]
Length = 185
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + I P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT++ + KV ED K SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEQRRKEFIKVAKGKGEDAKISIRSIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA +D + K G + +D+ +R EKE+D+LT KYV D++ K KE E+ E
Sbjct: 133 RKAKESIDKLIKDG-EVGEDEGRRAEKELDDLTAKYVAQVDELLKHKEAELLE 184
>gi|440780936|ref|ZP_20959407.1| ribosome recycling factor [Clostridium pasteurianum DSM 525]
gi|440221524|gb|ELP60729.1| ribosome recycling factor [Clostridium pasteurianum DSM 525]
Length = 185
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I L EL ++ GRA+P MLD I VE G LN LA VS +++ L I PYD
Sbjct: 13 MNKTISVLKNELASMKAGRANPAMLDRIQVEYYGSSTALNQLANVSAPEARVLLIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++E AI+ S LGLNP DG + IP LT+E + + K V K ED K +IR R
Sbjct: 73 SAIKDIERAILMSNLGLNPSNDGSVIRLVIPELTEETRKNIVKSVKKAGEDGKVAIRSVR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K K +++ +D++K+ E ++ + T Y+K+ D+I KEK++
Sbjct: 133 RDANDKIKALKKDNTITEDEVKKAEDDVQKKTDSYIKNIDEIVDKKEKDL 182
>gi|421528752|ref|ZP_15975309.1| ribosome recycling factor [Pseudomonas putida S11]
gi|431801161|ref|YP_007228064.1| ribosome recycling factor [Pseudomonas putida HB3267]
gi|402213773|gb|EJT85113.1| ribosome recycling factor [Pseudomonas putida S11]
gi|430791926|gb|AGA72121.1| ribosome recycling factor [Pseudomonas putida HB3267]
Length = 185
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I AL+R L +RTGRA P +LD + V G +MPLN +A ++V D++TL I +D
Sbjct: 13 MGKSIEALARNLAAIRTGRAHPSILDSVKVTAWGSEMPLNQVAAITVEDARTLKIVAHDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N +E AI++S LGLNP G + +PALT+E + K + +ED K ++R R
Sbjct: 73 NLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQASGVAEDAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ AL +KK + +D+ +R EI +LT KYV D KAKEK++
Sbjct: 133 RDALADLKKLTKDKEISEDEERRAADEIQKLTDKYVAEVDAAFKAKEKDL 182
>gi|418472166|ref|ZP_13041931.1| ribosome recycling factor [Streptomyces coelicoflavus ZG0656]
gi|371547220|gb|EHN75615.1| ribosome recycling factor [Streptomyces coelicoflavus ZG0656]
Length = 185
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV ED K SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVAKAKGEDAKVSIRSVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA +D M K G + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKDGIDKMVKDG-EVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|424788917|ref|ZP_18215650.1| ribosome recycling factor [Streptococcus intermedius BA1]
gi|422112344|gb|EKU16150.1| ribosome recycling factor [Streptococcus intermedius BA1]
Length = 185
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D +++K++
Sbjct: 19 SLAREFGSIRAGRANASLLDRITVEYYGVETPLNQIASITIPEARVLLVTPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK D++ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKGLEKDIQKVTDNAVKHIDEMTSTKEKELLE 184
>gi|335030867|ref|ZP_08524341.1| ribosome recycling factor [Streptococcus anginosus SK52 = DSM
20563]
gi|333770930|gb|EGL47908.1| ribosome recycling factor [Streptococcus anginosus SK52 = DSM
20563]
Length = 185
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 106/166 (63%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D +++K++
Sbjct: 19 SLAREFGSIRAGRANASLLDRISVEYYGVETPLNQIASITIPEARVLLVTPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPASDGTVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T + VK D++ +KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDEAVKHIDEMTASKEKELIE 184
>gi|456388564|gb|EMF54004.1| frr protein [Streptomyces bottropensis ATCC 25435]
Length = 186
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 94/172 (54%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ E G P+N LA SV + + + P+D
Sbjct: 14 MEKAVVVAKDDFAAIRTGRAHPAMFNKIVAEYYGALTPINQLASFSVPEPRMAVVTPFDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT+E + KV +ED K SIR R
Sbjct: 74 TALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVAKSKAEDSKVSIRSVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 134 RKAKDAIDKLVKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 185
>gi|399090304|ref|ZP_10754005.1| ribosome recycling factor [Caulobacter sp. AP07]
gi|398027933|gb|EJL21459.1| ribosome recycling factor [Caulobacter sp. AP07]
Length = 188
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+++L + LRTGRAS G+LD I+V G + LN +A +SV + + +++N +D
Sbjct: 16 MDKAVLSLKEDFAGLRTGRASSGLLDQIVVNAYGSMVQLNTVASISVPEPRQINVNIWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI +S LGLNP V+G L IP LT+E + + K+ K +E K ++R R
Sbjct: 76 GVVSAVEKAIRNSDLGLNPVVEGNNLRIPIPPLTEERRKDLVKIAGKYAEAQKVAVRNIR 135
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KKA S + +D++K++E E+ ++T +K D+ K KE+EI
Sbjct: 136 RDANDDLKKAEKASVISEDELKKMETEVQKMTDAAIKQVDEALKTKEQEI 185
>gi|334340439|ref|YP_004545419.1| ribosome recycling factor [Desulfotomaculum ruminis DSM 2154]
gi|334091793|gb|AEG60133.1| ribosome recycling factor [Desulfotomaculum ruminis DSM 2154]
Length = 184
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 103/169 (60%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
++ ++ + +E LR GRA+P ++D + V G PLN LA +SV +++TL I P+D
Sbjct: 13 LKKSVEVVRKEFASLRAGRATPALVDKVTVSYYGTPTPLNQLANISVPEARTLLIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI+ S LG+ P DG + IP LT+E + K V K +E+ + +IR R
Sbjct: 73 SAMPEIERAILKSDLGITPTSDGTVIRLTIPQLTQERRVELVKSVKKKAEEGRVAIRNVR 132
Query: 121 QKALDMMK-KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +K K +P+D++KR + ++ +LT KY+K D++ K KE+EI
Sbjct: 133 RDINDTLKSKQKEGVPEDEVKRGQDDMQKLTDKYIKEIDEMVKTKEQEI 181
>gi|295136354|ref|YP_003587030.1| ribosome releasing factor [Zunongwangia profunda SM-A87]
gi|294984369|gb|ADF54834.1| ribosome releasing factor [Zunongwangia profunda SM-A87]
Length = 184
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L+++L +R G+ASP ML ++VE G PLN +A V+ D++T+S+ P++
Sbjct: 16 MQNAISHLNKQLLNIRAGKASPSMLGSVMVEYYGSLTPLNQVANVNAPDARTISVQPFEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ +E I+ + LG NP +G+ +I ++P LT+E + + K +ED K +R R
Sbjct: 76 GSIPNIEKGILQANLGFNPMNNGESVIISVPPLTEERRKQLVKQAKSEAEDAKVGVRNDR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A + +KK S +D K E +I ELT KY+ D I +AKEKEI
Sbjct: 136 KTANNELKKIEVS--EDLQKNAEADIQELTDKYIAKIDRILEAKEKEI 181
>gi|255994878|ref|ZP_05428013.1| ribosome recycling factor [Eubacterium saphenum ATCC 49989]
gi|255993591|gb|EEU03680.1| ribosome recycling factor [Eubacterium saphenum ATCC 49989]
Length = 190
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 2 EAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPN 61
E I L+ EL +R GRA+P +LD I V+ G PL ++A +SV D K+L I+P+DP+
Sbjct: 19 EKTISLLTGELNSVRAGRANPSLLDQIRVDYYGTPTPLKNIANISVPDPKSLMISPFDPS 78
Query: 62 TLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQ 121
+KE+ AI S LG+NP DG+ + +P LT+E + + K+V + ++D K +IR R+
Sbjct: 79 AIKEIIKAINESELGINPLDDGKNIRLKVPQLTEERRKEITKMVKQITDDAKIAIRNLRR 138
Query: 122 KALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
A D +KKA + +D++K K+I T ++ K D + K KEKEI
Sbjct: 139 DANDHLKKAEKNGDISEDELKGDTKDIQTKTDEFTKKIDGMLKEKEKEI 187
>gi|297559222|ref|YP_003678196.1| ribosome recycling factor [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296843670|gb|ADH65690.1| ribosome recycling factor [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 185
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ + +RTGR +P + I V+ G + P+N LA SV + + + I+P+D
Sbjct: 13 MEKAVTVAKEDFATIRTGRPTPATFNKITVDYYGARTPINQLASFSVPEPRMVVISPFDV 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N+ ++ AI +S LG+NP DGQ + P L++E + KV +ED K SIR R
Sbjct: 73 NSRTDIINAIRNSDLGVNPSDDGQVIRVVFPELSEERRKEYVKVARTKAEDSKVSIRNVR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A D +KA S + +D+ R + E+DEL+ KYV S D++ K KE E+ E
Sbjct: 133 RRAKDTFEKAVKSGDIGEDEAHRAQAELDELSSKYVASVDELLKHKESELLE 184
>gi|345849761|ref|ZP_08802768.1| ribosome recycling factor [Streptomyces zinciresistens K42]
gi|345638742|gb|EGX60242.1| ribosome recycling factor [Streptomyces zinciresistens K42]
Length = 186
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 95/172 (55%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 14 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMAVVTPFDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV +ED + SIR R
Sbjct: 74 SALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVAKGKAEDARVSIRSVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 134 RKAKDTIDKLIKDGEIGEDEGRRAEKELDDTTHKYVAQVDELLKHKEAELLE 185
>gi|379729863|ref|YP_005322059.1| ribosome recycling factor [Saprospira grandis str. Lewin]
gi|378575474|gb|AFC24475.1| ribosome recycling factor [Saprospira grandis str. Lewin]
Length = 187
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 101/169 (59%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +IV REL K+R+G+A+P M+ + VE G+ PLN +A + D++TL I P++
Sbjct: 16 MQNSIVHFQRELLKIRSGKATPQMVADVKVEYYGMPTPLNQVAGIKTTDARTLVIQPFEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E A+ ++ LG+ P+ DG+ + +P LT+E + + K + +ED K SIR SR
Sbjct: 76 KMVSVVEQALYAANLGITPQSDGEVVRMVVPPLTEERRKQLVKQASGFAEDAKVSIRNSR 135
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+ +K A P+D KR E+ + ELT KY K D I KE+E+
Sbjct: 136 RDAIQEVKAAVKEGYPEDAGKRSEQTVQELTDKYSKQVDSIFAKKEEEL 184
>gi|26988326|ref|NP_743751.1| ribosome recycling factor [Pseudomonas putida KT2440]
gi|148549389|ref|YP_001269491.1| ribosome recycling factor [Pseudomonas putida F1]
gi|386013532|ref|YP_005931809.1| Frr [Pseudomonas putida BIRD-1]
gi|395445029|ref|YP_006385282.1| ribosome recycling factor [Pseudomonas putida ND6]
gi|397695324|ref|YP_006533205.1| ribosome-recycling factor [Pseudomonas putida DOT-T1E]
gi|421522646|ref|ZP_15969287.1| ribosome recycling factor [Pseudomonas putida LS46]
gi|34924941|sp|Q88MH7.1|RRF_PSEPK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166231212|sp|A5W847.1|RRF_PSEP1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|24983074|gb|AAN67215.1|AE016348_7 ribosome recycling factor [Pseudomonas putida KT2440]
gi|148513447|gb|ABQ80307.1| ribosome recycling factor [Pseudomonas putida F1]
gi|313500238|gb|ADR61604.1| Frr [Pseudomonas putida BIRD-1]
gi|388559026|gb|AFK68167.1| ribosome recycling factor [Pseudomonas putida ND6]
gi|397332054|gb|AFO48413.1| Ribosome-recycling factor [Pseudomonas putida DOT-T1E]
gi|402753746|gb|EJX14239.1| ribosome recycling factor [Pseudomonas putida LS46]
Length = 185
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I ALSR L +RTGRA P +LD + V G +MPLN +A ++V D++TL I +D
Sbjct: 13 MGKSIEALSRNLAAIRTGRAHPSILDSVKVTAWGSEMPLNQVAAITVEDARTLKIVAHDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N +E AI++S LGLNP G + +PALT+E + K + +ED K ++R R
Sbjct: 73 NLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQASGVAEDAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ AL +KK + +D+ +R EI +LT K+V D KAKEK++
Sbjct: 133 RDALADLKKLTKDKEISEDEERRAADEIQKLTDKFVAEVDAAFKAKEKDL 182
>gi|418086678|ref|ZP_12723848.1| ribosome recycling factor [Streptococcus pneumoniae GA47033]
gi|418202218|ref|ZP_12838648.1| ribosome recycling factor [Streptococcus pneumoniae GA52306]
gi|419455342|ref|ZP_13995302.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP04]
gi|421284982|ref|ZP_15735759.1| ribosome recycling factor [Streptococcus pneumoniae GA60190]
gi|353758939|gb|EHD39525.1| ribosome recycling factor [Streptococcus pneumoniae GA47033]
gi|353868021|gb|EHE47911.1| ribosome recycling factor [Streptococcus pneumoniae GA52306]
gi|379629799|gb|EHZ94393.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP04]
gi|395886961|gb|EJG97976.1| ribosome recycling factor [Streptococcus pneumoniae GA60190]
Length = 185
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|403510545|ref|YP_006642183.1| ribosome recycling factor [Nocardiopsis alba ATCC BAA-2165]
gi|402799834|gb|AFR07244.1| ribosome recycling factor [Nocardiopsis alba ATCC BAA-2165]
Length = 185
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ + +RTGR +P + I V+ G + P+N LA SV + + + I+P+D
Sbjct: 13 MEKAVTVAKEDFATIRTGRPTPATFNKITVDYYGARTPINQLASFSVPEPRMVVISPFDV 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N+ E+ AI +S LG+NP DGQ + P L++E + KV ED K SIR R
Sbjct: 73 NSRTEIINAIRNSDLGVNPSDDGQVIRVIFPELSEERRKEYVKVARTKGEDGKVSIRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A D +KA L +D+ R + E+DEL +KYV S D++ K KE E+ E
Sbjct: 133 RRAKDAFEKAVKAGELGEDEAHRAQTELDELAQKYVASIDELLKHKEAELLE 184
>gi|270292949|ref|ZP_06199160.1| ribosome recycling factor [Streptococcus sp. M143]
gi|401683554|ref|ZP_10815440.1| ribosome recycling factor [Streptococcus sp. BS35b]
gi|417794354|ref|ZP_12441612.1| ribosome recycling factor [Streptococcus oralis SK255]
gi|417933971|ref|ZP_12577291.1| ribosome recycling factor [Streptococcus mitis bv. 2 str. F0392]
gi|270278928|gb|EFA24774.1| ribosome recycling factor [Streptococcus sp. M143]
gi|334270198|gb|EGL88605.1| ribosome recycling factor [Streptococcus oralis SK255]
gi|340770541|gb|EGR93056.1| ribosome recycling factor [Streptococcus mitis bv. 2 str. F0392]
gi|400187632|gb|EJO21826.1| ribosome recycling factor [Streptococcus sp. BS35b]
Length = 185
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|427428408|ref|ZP_18918449.1| Ribosome recycling factor [Caenispirillum salinarum AK4]
gi|425882141|gb|EKV30823.1| Ribosome recycling factor [Caenispirillum salinarum AK4]
Length = 191
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ L +E LRTGRA +LD ++VE G MPLN +A VSV + + L ++ +D
Sbjct: 19 MDQAVEVLKKEFAGLRTGRAHTSLLDPVVVEAYGSTMPLNQVANVSVPEPRMLVVSVWDR 78
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AI ++ LGLNP +GQ + IP LT+E + KV AK E+ + ++R R
Sbjct: 79 SMIKAVEKAIRNAGLGLNPAAEGQTIRVPIPPLTEERRAELTKVAAKYGENARVAVRNVR 138
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KK ++ +D+ + EKE+ +LT + + + D+ K KE+EI
Sbjct: 139 RDGMDQLKKMEKDGTISQDEQRAHEKEVQQLTDETISTIDETLKHKEQEI 188
>gi|335030201|ref|ZP_08523696.1| ribosome recycling factor [Streptococcus infantis SK1076]
gi|334266781|gb|EGL85252.1| ribosome recycling factor [Streptococcus infantis SK1076]
Length = 185
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRITVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I + T VK D++ KEKEI E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKATDDAVKYIDEMTANKEKEILE 184
>gi|334139070|ref|ZP_08512469.1| ribosome recycling factor [Paenibacillus sp. HGF7]
gi|333603248|gb|EGL14667.1| ribosome recycling factor [Paenibacillus sp. HGF7]
Length = 184
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 99/171 (57%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL R+L LR GRA+P +LD I VE G P+N LA +S DS+TL I P+D
Sbjct: 13 MSKAIDALKRDLATLRAGRANPALLDKIQVEYYGAMTPVNQLANISTPDSRTLIIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++ +E AI+ S LGL P DG + IP LT+E + K+ K E+ K +IR R
Sbjct: 73 SSMGAIEKAILKSELGLTPANDGTVIRLVIPPLTEERRSELVKLTRKYGEEAKVAIRNIR 132
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + + +D+ +R + +I + T K+ + + KEKEI E
Sbjct: 133 RDANDDIKKQEKNGISEDESRRHQDDIQKFTDKFTAEVEKVLTGKEKEIME 183
>gi|416381881|ref|ZP_11684253.1| Ribosome recycling factor [Crocosphaera watsonii WH 0003]
gi|357265462|gb|EHJ14223.1| Ribosome recycling factor [Crocosphaera watsonii WH 0003]
Length = 181
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ A R +RTGRA+P +LD + V+ G + PLN LA +S ++ + I PYD
Sbjct: 9 MQKSVEATQRSFNTIRTGRANPAILDRVTVDYYGTETPLNQLANISTPEATMIMIQPYDK 68
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI S +GL P DGQ + IP LT+E + + K+ +K +E+ K +IR R
Sbjct: 69 GSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERRKDLVKLASKMAEEGKVAIRNIR 128
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K S + KD+ + L+ +I ++T K+ DD+ K+KE +I
Sbjct: 129 RDAIDDVRKQEKNSDISKDESRDLQDDIQKVTDKFTNKIDDLLKSKETDI 178
>gi|81428873|ref|YP_395873.1| ribosome recycling factor [Lactobacillus sakei subsp. sakei 23K]
gi|123564051|sp|Q38W67.1|RRF_LACSS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|78610515|emb|CAI55566.1| Ribosome recycling factor (ribosome releasing factor) (RRF)
[Lactobacillus sakei subsp. sakei 23K]
Length = 185
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 104/173 (60%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A +L R L ++R GRA+ +++ + VE G PLN +A +++ +++ L I PYD
Sbjct: 13 MEKAEASLRRTLGQIRAGRANASLVNRVNVEYYGAMTPLNQIAAITIPEARVLLITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+++E A+ ++ +G++P DG + IP LT E + + K V K +E K +R +R
Sbjct: 73 GALEDIEKALYTADIGISPANDGSVIRLVIPQLTGERRKEIAKEVGKEAELAKVVVRNAR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
+ A+D +KKA S + +D+M LE+++ LT + K D I K KEKEI EG
Sbjct: 133 RDAMDNLKKAEKASEISEDEMHDLEEQVQNLTNEATKKIDAISKDKEKEITEG 185
>gi|410594908|ref|YP_006951635.1| ribosome-recycling factor [Streptococcus agalactiae SA20-06]
gi|421532339|ref|ZP_15978703.1| ribosome recycling factor [Streptococcus agalactiae STIR-CD-17]
gi|403642415|gb|EJZ03261.1| ribosome recycling factor [Streptococcus agalactiae STIR-CD-17]
gi|410518547|gb|AFV72691.1| Ribosome-recycling factor [Streptococcus agalactiae SA20-06]
Length = 185
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
E + +LSRE +R GRA+ +LD I VE G PLN LA ++V +++ L I+P+D
Sbjct: 13 FEQSHQSLSREFAVIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++K++E AI S LG+NP DG + IPALT+E + + K V K E+ K +IR R
Sbjct: 73 SSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D KK + +D +K LEK+I + T VK D++ KEKE+ E
Sbjct: 133 RDAMDEAKKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEMTANKEKELLE 184
>gi|300173184|ref|YP_003772350.1| ribosome Recycling Factor, RRF [Leuconostoc gasicomitatum LMG
18811]
gi|333397948|ref|ZP_08479761.1| ribosome Recycling Factor, RRF [Leuconostoc gelidum KCTC 3527]
gi|406599853|ref|YP_006745199.1| ribosome Recycling Factor, RRF [Leuconostoc gelidum JB7]
gi|299887563|emb|CBL91531.1| Ribosome Recycling Factor, RRF [Leuconostoc gasicomitatum LMG
18811]
gi|406371388|gb|AFS40313.1| ribosome Recycling Factor, RRF [Leuconostoc gelidum JB7]
Length = 181
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL REL +RTGRA+P +LD I VE G PL +A +SV +++ L I P+D
Sbjct: 12 MQGAQDALKRELGSIRTGRANPHILDRIEVEYYGAMTPLKQVASISVPEARILLITPFDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+E+ AI S LGLNP DG + AIP +T+E + + K V +E K SIR R
Sbjct: 72 SALEEIVRAINMSDLGLNPASDGNIVRLAIPQMTEEGRKDLAKQVKAEAEKAKVSIRNVR 131
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK LP+D ++ E ++ +LT +K+ D I KEKE+
Sbjct: 132 RDAMDTVKK-DKELPEDDVRNAEDDVQKLTDDNIKAIDVIAAEKEKEL 178
>gi|326388633|ref|ZP_08210226.1| ribosome recycling factor [Novosphingobium nitrogenifigens DSM
19370]
gi|326206884|gb|EGD57708.1| ribosome recycling factor [Novosphingobium nitrogenifigens DSM
19370]
Length = 185
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ AL +L+ LRTGRA+ +LD I VE G +MPLN +A VS + + LS+ +D
Sbjct: 13 MKGAVDALRHDLSGLRTGRANTALLDPITVEIYGSRMPLNQVATVSAPEPRLLSVQVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++ +E AI S+ LGLNP DG L IP LT+E + + K+ ++ +E + +IR R
Sbjct: 73 SSIGPVEKAIRSAGLGLNPINDGNTLRLPIPDLTEERRKELAKLASQYAEKARIAIRNVR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ ++ +K +A + +D+ KR E E+ +LT + +K+AD+ KEKEI
Sbjct: 133 RDGMEALKADEAKKEISEDERKRAETEVQKLTDEIIKAADEAASEKEKEI 182
>gi|257439607|ref|ZP_05615362.1| ribosome recycling factor [Faecalibacterium prausnitzii A2-165]
gi|257197974|gb|EEU96258.1| ribosome recycling factor [Faecalibacterium prausnitzii A2-165]
Length = 184
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 106/171 (61%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M++++ L REL +R GRA+P +LD + V+ G P+ +A V+V +++TL+I P+D
Sbjct: 12 MKSSVEHLDRELAAVRAGRANPAVLDKVSVDYYGAPTPIQQVASVAVSEARTLTITPWDR 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ + AI++S +G+ P DG + PA T+E + + K VAK E+ K ++R R
Sbjct: 72 TLLRAISKAIMASDVGITPIDDGSTIRLNFPAPTEERRKQLAKEVAKLGEEAKVAVRNVR 131
Query: 121 QKALD---MMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D MKKAG L +D K +E+E+ +LT KY+K+ D + K+KEI
Sbjct: 132 RDAMDKAKAMKKAG-ELTEDTQKTMEEEVQKLTDKYIKNIDAAVEEKQKEI 181
>gi|197105240|ref|YP_002130617.1| ribosome recycling factor [Phenylobacterium zucineum HLK1]
gi|238690149|sp|B4RBZ1.1|RRF_PHEZH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|196478660|gb|ACG78188.1| ribosome recycling factor protein [Phenylobacterium zucineum HLK1]
Length = 188
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ AL E LRTGRAS +LD I V+ G MPL +A VSV + + +++N +D
Sbjct: 16 MDKAVAALKEEFGSLRTGRASASLLDQIHVDAYGSSMPLTQVAAVSVPEPRMITVNVWDR 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI S LGLNP VDGQ L IP LT+E + + K+ + +E + ++R R
Sbjct: 76 GMVVSVEKAIRQSDLGLNPVVDGQTLRIPIPPLTEERRKDLAKIAGRYAEQQRVAVRNIR 135
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A + ++KA + + +D+ KR+E E+ ++T + +K D+ K KE+EI
Sbjct: 136 RDANEDLRKAQKDNVISQDEEKRMETEVQKMTDEAIKRIDEALKTKEQEI 185
>gi|443673461|ref|ZP_21138525.1| Ribosome-recycling factor [Rhodococcus sp. AW25M09]
gi|443413961|emb|CCQ16863.1| Ribosome-recycling factor [Rhodococcus sp. AW25M09]
Length = 185
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L+ +RTGRA+PGM I++E G P+ LA +SV +++ + I PY+
Sbjct: 13 MEKAVSVARDDLSSIRTGRANPGMFSRIVIEYYGALTPITQLASISVPEARLVVIKPYES 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI +S LG+NP DG + +P LT+E + K ED K SIR R
Sbjct: 73 SQLGPIETAIRNSDLGVNPTNDGNLIRIGVPQLTEERRREFVKQAKGKGEDAKVSIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K ++ +K+ +D + R E E+D+ T KY S DD+ K KE E+ E
Sbjct: 133 RKTMEELKRIQKDGEAGEDDVVRAENELDKTTAKYTASVDDLVKRKEGELME 184
>gi|392428381|ref|YP_006469392.1| ribosome recycling factor [Streptococcus intermedius JTH08]
gi|418965688|ref|ZP_13517450.1| ribosome recycling factor [Streptococcus constellatus subsp.
constellatus SK53]
gi|419777520|ref|ZP_14303432.1| ribosome recycling factor [Streptococcus intermedius SK54]
gi|423068950|ref|ZP_17057738.1| ribosome-recycling factor [Streptococcus intermedius F0395]
gi|423070743|ref|ZP_17059519.1| ribosome-recycling factor [Streptococcus intermedius F0413]
gi|355365299|gb|EHG13023.1| ribosome-recycling factor [Streptococcus intermedius F0413]
gi|355365350|gb|EHG13073.1| ribosome-recycling factor [Streptococcus intermedius F0395]
gi|383341791|gb|EID20038.1| ribosome recycling factor [Streptococcus constellatus subsp.
constellatus SK53]
gi|383845000|gb|EID82410.1| ribosome recycling factor [Streptococcus intermedius SK54]
gi|391757527|dbj|BAM23144.1| ribosome recycling factor [Streptococcus intermedius JTH08]
Length = 185
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D +++K++
Sbjct: 19 SLAREFGSIRAGRANASLLDRITVEYYGVETPLNQIASITIPEARVLLVTPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK D++ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKGLEKDIQKVTDDAVKHIDEMTSTKEKELLE 184
>gi|403383310|ref|ZP_10925367.1| ribosome recycling factor [Kurthia sp. JC30]
Length = 185
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL+R +R GRA+ +LD I VE G PLN +A +SV +++ L I PYD
Sbjct: 13 MTKAIDALTRAFASIRAGRANASLLDRITVEYYGAPTPLNQMASISVPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+E AI+ S +G+ P DG + IPALT+E + + K+V K +E+ K +IR R
Sbjct: 73 TILGEIEKAILKSDIGITPTNDGNVIRLTIPALTEERRKDLSKLVKKEAEEAKVAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D KKA + +D ++ ++ ++T Y+K D++ KEKEI
Sbjct: 133 RDVNDDFKKAEKAGDITEDDLRGYGDDVQKITDDYIKQIDELTAEKEKEI 182
>gi|421489891|ref|ZP_15937266.1| ribosome recycling factor [Streptococcus anginosus SK1138]
gi|400373904|gb|EJP26828.1| ribosome recycling factor [Streptococcus anginosus SK1138]
Length = 185
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 106/166 (63%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D +++K++
Sbjct: 19 SLAREFGSIRAGRANASLLDRISVEYYGVETPLNQIASITIPEARVLLVTPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 EHALNASDLGITPASDGTVIRLVIPALTEETRRNLAKEVKKVGENAKIAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T + VK D++ +KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKILEKDIQKVTDEAVKHIDEMTASKEKELIE 184
>gi|448880147|gb|AGE46818.1| ribosome recycling factor, partial [Streptomyces
diastatochromogenes]
Length = 185
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAMTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI S LG+NP DG + A P LT+E + KV +ED K SIR R
Sbjct: 73 SAPRNIEQAIRDSDLGVNPSNDGNIIRATFPELTEERRREFIKVAKNKAEDSKISIRSVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K S +D+++R EKE+D++T KYV D++ K KE E+ E
Sbjct: 133 RKAKESLDKLVKDKES-GEDEVRRAEKELDDVTAKYVAQVDELLKHKEAELLE 184
>gi|450046322|ref|ZP_21838879.1| ribosome recycling factor [Streptococcus mutans N34]
gi|449199098|gb|EMC00182.1| ribosome recycling factor [Streptococcus mutans N34]
Length = 185
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
E + +L+RE +R G A+ +LD I VE GV PLN LA ++V +++ L ++P+D
Sbjct: 13 FEQSHQSLAREFGSIRAGHANASLLDRIEVEYYGVPTPLNQLASITVPEARVLLVSPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK++E AI +S +G+NP DG + IPALT+E + + K V K E+ K +IR R
Sbjct: 73 SSLKDIEHAINASDIGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKVAIRNIR 132
Query: 121 QKALDMMKKAG--SSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D KK + +D++K LEK+I ++T + VK D + KEKE+ E
Sbjct: 133 RDAMDEAKKQEKIKEITEDELKSLEKDIQKVTDEAVKHIDSMTANKEKELLE 184
>gi|419760286|ref|ZP_14286566.1| ribosome recycling factor [Thermosipho africanus H17ap60334]
gi|407514614|gb|EKF49425.1| ribosome recycling factor [Thermosipho africanus H17ap60334]
Length = 185
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 103/176 (58%), Gaps = 10/176 (5%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ A+ EL KLRTGR SP +L+ I ++ GV P+N +A ++V + ++L I P++
Sbjct: 13 MKKSVEAIDEELKKLRTGRPSPALLEEIKIDYYGVPTPINQVATINVTEERSLIIKPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK------Q 114
N L +E AI +S LGLNP DG + P+ T E Q K V KT E V+ +
Sbjct: 73 NLLSAIEKAIQASDLGLNPTNDGNVVRLVFPSPTTEQRQ---KWVKKTKEIVEHGKIAVR 129
Query: 115 SIRRSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+IRR K L M K G + +D KRLEKE+ LT KYV+ D + + KEKEI E
Sbjct: 130 NIRRDVIKELKEMTKNG-EISEDDEKRLEKEVQNLTDKYVEELDKLFEKKEKEIME 184
>gi|381164872|ref|ZP_09874102.1| ribosome recycling factor [Saccharomonospora azurea NA-128]
gi|418461548|ref|ZP_13032620.1| ribosome recycling factor [Saccharomonospora azurea SZMC 14600]
gi|359738418|gb|EHK87306.1| ribosome recycling factor [Saccharomonospora azurea SZMC 14600]
gi|379256777|gb|EHY90703.1| ribosome recycling factor [Saccharomonospora azurea NA-128]
Length = 185
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +RTGRA+P M ++VE G PLN LA +++ +++ + PYD
Sbjct: 13 MEKAVSFAKEDLASVRTGRATPAMFSRVVVEYYGAPTPLNQLASITIPEARMAVVKPYDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI S LG+NP DG + IP LT+E + M KV E+ + SIR R
Sbjct: 73 SQLNTIEKAIRDSDLGVNPTNDGNIIRVVIPQLTEERRREMVKVAKSKGEEARISIRGVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D++ R EKE+ LT +YV +++ K KE E+ E
Sbjct: 133 RKAKEELDRIAKDGEA-GEDEVARAEKELQNLTDRYVHQVEELVKNKEAELLE 184
>gi|453052413|gb|EME99895.1| ribosome recycling factor [Streptomyces mobaraensis NBRC 13819 =
DSM 40847]
Length = 185
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV ED K SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGNIIRVNFPELTEERRREFIKVAKGKGEDAKVSIRSIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K +D+++R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKDALDKLVKDKESGEDEVRRAEKELDDTTAKYVAQVDELLKHKESELLE 184
>gi|293365195|ref|ZP_06611912.1| ribosome recycling factor [Streptococcus oralis ATCC 35037]
gi|307703733|ref|ZP_07640674.1| ribosome recycling factor [Streptococcus oralis ATCC 35037]
gi|291316645|gb|EFE57081.1| ribosome recycling factor [Streptococcus oralis ATCC 35037]
gi|307622568|gb|EFO01564.1| ribosome recycling factor [Streptococcus oralis ATCC 35037]
Length = 185
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDRSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|46202355|ref|ZP_00053346.2| COG0233: Ribosome recycling factor [Magnetospirillum
magnetotacticum MS-1]
Length = 173
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M++A+ L +E + LR+GRAS +LD ++VE G MPL+ V V + + L++ +D
Sbjct: 1 MDSAVEVLKKEFSGLRSGRASVNLLDPVVVEAYGQTMPLSQCGTVGVPEPRMLTVQVWDK 60
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AI ++ LGLNP+ DGQ + IPAL +E + + KV K +E + S+R R
Sbjct: 61 SQVKAVEKAIANAGLGLNPQADGQMIRVPIPALNEERRKELQKVAGKYAEQARISVRNVR 120
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KK + +D++K+ EKE+ +T +K D++ KEKEI
Sbjct: 121 RDGMDSLKKMEKDGHISEDEIKKHEKEVQTVTDDTIKKIDEVLGHKEKEI 170
>gi|365824507|ref|ZP_09366581.1| ribosome recycling factor [Actinomyces graevenitzii C83]
gi|365259567|gb|EHM89552.1| ribosome recycling factor [Actinomyces graevenitzii C83]
Length = 185
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+VA EL +RTGRA+P + + VE G PL LA V+V +++T+ I P+D
Sbjct: 13 MEKALVAAKNELASIRTGRANPALFTSLSVEYYGAPTPLQQLASVTVPEARTVLITPFDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
K++ A+ S LG+NP DG + +PALT+E + K+ +E+ + +++R
Sbjct: 73 TATKDIVTAVRESDLGVNPTDDGNVIRVNLPALTEERRKEYVKLARSRAEESRVQLRNVR 132
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
R + LD +KK G + +D+++R EKE+D LTK+YV+ D AKE E+ E
Sbjct: 133 RKTKDVLDKIKKDGEA-GEDEVERAEKELDALTKRYVEQVDKALTAKESELLE 184
>gi|365871115|ref|ZP_09410656.1| ribosome recycling factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|397679955|ref|YP_006521490.1| ribosome-recycling factor [Mycobacterium massiliense str. GO 06]
gi|414580700|ref|ZP_11437840.1| ribosome recycling factor [Mycobacterium abscessus 5S-1215]
gi|418247670|ref|ZP_12874056.1| ribosome recycling factor [Mycobacterium abscessus 47J26]
gi|418421299|ref|ZP_12994474.1| ribosome recycling factor [Mycobacterium abscessus subsp. bolletii
BD]
gi|420879212|ref|ZP_15342579.1| ribosome recycling factor [Mycobacterium abscessus 5S-0304]
gi|420884711|ref|ZP_15348071.1| ribosome recycling factor [Mycobacterium abscessus 5S-0421]
gi|420889588|ref|ZP_15352936.1| ribosome recycling factor [Mycobacterium abscessus 5S-0422]
gi|420894562|ref|ZP_15357902.1| ribosome recycling factor [Mycobacterium abscessus 5S-0708]
gi|420903049|ref|ZP_15366380.1| ribosome recycling factor [Mycobacterium abscessus 5S-0817]
gi|420906247|ref|ZP_15369565.1| ribosome recycling factor [Mycobacterium abscessus 5S-1212]
gi|420932299|ref|ZP_15395574.1| ribosome recycling factor [Mycobacterium massiliense 1S-151-0930]
gi|420936785|ref|ZP_15400054.1| ribosome recycling factor [Mycobacterium massiliense 1S-152-0914]
gi|420942558|ref|ZP_15405814.1| ribosome recycling factor [Mycobacterium massiliense 1S-153-0915]
gi|420948789|ref|ZP_15412039.1| ribosome recycling factor [Mycobacterium massiliense 1S-154-0310]
gi|420952817|ref|ZP_15416060.1| ribosome recycling factor [Mycobacterium massiliense 2B-0626]
gi|420956988|ref|ZP_15420224.1| ribosome recycling factor [Mycobacterium massiliense 2B-0107]
gi|420962701|ref|ZP_15425925.1| ribosome recycling factor [Mycobacterium massiliense 2B-1231]
gi|420973185|ref|ZP_15436377.1| ribosome recycling factor [Mycobacterium abscessus 5S-0921]
gi|420992941|ref|ZP_15456087.1| ribosome recycling factor [Mycobacterium massiliense 2B-0307]
gi|420996117|ref|ZP_15459260.1| ribosome recycling factor [Mycobacterium massiliense 2B-0912-R]
gi|421003234|ref|ZP_15466357.1| ribosome recycling factor [Mycobacterium massiliense 2B-0912-S]
gi|421050193|ref|ZP_15513187.1| ribosome recycling factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|353452163|gb|EHC00557.1| ribosome recycling factor [Mycobacterium abscessus 47J26]
gi|363994918|gb|EHM16136.1| ribosome recycling factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|363997200|gb|EHM18413.1| ribosome recycling factor [Mycobacterium abscessus subsp. bolletii
BD]
gi|392080474|gb|EIU06300.1| ribosome recycling factor [Mycobacterium abscessus 5S-0421]
gi|392084121|gb|EIU09946.1| ribosome recycling factor [Mycobacterium abscessus 5S-0304]
gi|392087336|gb|EIU13158.1| ribosome recycling factor [Mycobacterium abscessus 5S-0422]
gi|392100410|gb|EIU26204.1| ribosome recycling factor [Mycobacterium abscessus 5S-0817]
gi|392100596|gb|EIU26388.1| ribosome recycling factor [Mycobacterium abscessus 5S-0708]
gi|392104151|gb|EIU29937.1| ribosome recycling factor [Mycobacterium abscessus 5S-1212]
gi|392115852|gb|EIU41620.1| ribosome recycling factor [Mycobacterium abscessus 5S-1215]
gi|392137058|gb|EIU62795.1| ribosome recycling factor [Mycobacterium massiliense 1S-151-0930]
gi|392142300|gb|EIU68025.1| ribosome recycling factor [Mycobacterium massiliense 1S-152-0914]
gi|392147655|gb|EIU73373.1| ribosome recycling factor [Mycobacterium massiliense 1S-153-0915]
gi|392155819|gb|EIU81525.1| ribosome recycling factor [Mycobacterium massiliense 1S-154-0310]
gi|392156329|gb|EIU82032.1| ribosome recycling factor [Mycobacterium massiliense 2B-0626]
gi|392164736|gb|EIU90424.1| ribosome recycling factor [Mycobacterium abscessus 5S-0921]
gi|392179043|gb|EIV04695.1| ribosome recycling factor [Mycobacterium massiliense 2B-0307]
gi|392191937|gb|EIV17562.1| ribosome recycling factor [Mycobacterium massiliense 2B-0912-R]
gi|392193806|gb|EIV19427.1| ribosome recycling factor [Mycobacterium massiliense 2B-0912-S]
gi|392238796|gb|EIV64289.1| ribosome recycling factor [Mycobacterium massiliense CCUG 48898]
gi|392245614|gb|EIV71091.1| ribosome recycling factor [Mycobacterium massiliense 2B-1231]
gi|392251798|gb|EIV77269.1| ribosome recycling factor [Mycobacterium massiliense 2B-0107]
gi|395458220|gb|AFN63883.1| Ribosome-recycling factor [Mycobacterium massiliense str. GO 06]
Length = 185
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ + +RTGRA+PGM ++++ G P+ +A ++V +++ + I PY+
Sbjct: 13 MEKAVTVARDDFATIRTGRANPGMFQRVVIDYYGTPTPITQVAGINVPEARMVVIKPYES 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LK +E AI +S LGLNP DG + AIP LT+E + + K ED K ++R R
Sbjct: 73 NQLKAIEDAIRNSDLGLNPSNDGSIIRVAIPQLTEERRRELVKQAKGKGEDAKVTLRNIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA L+ +KK G + +D++ R EK++D+ T +YV D++ K KE E+ E
Sbjct: 133 RKANDELNRIKKDGEA-GEDEVSRAEKDLDKTTAQYVSQIDELVKHKEGELLE 184
>gi|262283030|ref|ZP_06060797.1| ribosome-recycling factor [Streptococcus sp. 2_1_36FAA]
gi|262261282|gb|EEY79981.1| ribosome-recycling factor [Streptococcus sp. 2_1_36FAA]
Length = 185
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGAVRAGRANASLLDRISVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERAINASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKIGENAKIAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK D++ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTAHKEKELLE 184
>gi|310816031|ref|YP_003963995.1| ribosome recycling factor [Ketogulonicigenium vulgare Y25]
gi|385233542|ref|YP_005794884.1| ribosome-recycling factor [Ketogulonicigenium vulgare WSH-001]
gi|308754766|gb|ADO42695.1| ribosome recycling factor [Ketogulonicigenium vulgare Y25]
gi|343462453|gb|AEM40888.1| Ribosome-recycling factor [Ketogulonicigenium vulgare WSH-001]
Length = 187
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 99/169 (58%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI AL E LRTGRAS ML+ I+V+ G P+N L ++V + + ++IN +D
Sbjct: 16 MDGAIAALRTEFASLRTGRASGSMLEPIVVDAYGQTTPINQLGTINVPEPRMVTINVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI S LG+NP+ +G ++ IP L +E + + KV A +E + ++R R
Sbjct: 76 GMVSKVEKAIRDSGLGINPQTNGTIIMLPIPELNEERRRELTKVAAGYAEHARVAVRNLR 135
Query: 121 QKALDMMKKAGS-SLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA S L +D +K E E+ ELT K++K D K+ EI
Sbjct: 136 RDGMDKIKKAKSDGLSEDDVKFWESEVQELTDKFIKLVDQTLDTKQAEI 184
>gi|307718990|ref|YP_003874522.1| ribosome recycling factor [Spirochaeta thermophila DSM 6192]
gi|306532715|gb|ADN02249.1| ribosome recycling factor [Spirochaeta thermophila DSM 6192]
Length = 184
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ AL +L +RTGRA+P + + I V G + PLN +A +S + + + I P+D
Sbjct: 12 MKKSVHALKDQLATIRTGRATPALFEKITVNYYGQQTPLNQVASISAPEPRLVVIQPWDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+E+E AI SS L LNP DG+ L IP LT+E + K+ +E + +IR R
Sbjct: 72 SVLQEIEKAIQSSDLSLNPVNDGKVLRINIPPLTEERRKEYIKLAKNVAEQSRVAIRNIR 131
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + +KKA L +D+ KR E+EI +LT+KY+ +++ +AKEKEI E
Sbjct: 132 RDANEALKKAEKEGQLSEDERKRGEEEIQKLTQKYIDEINNLLEAKEKEIME 183
>gi|168494373|ref|ZP_02718516.1| ribosome recycling factor [Streptococcus pneumoniae CDC3059-06]
gi|183575679|gb|EDT96207.1| ribosome recycling factor [Streptococcus pneumoniae CDC3059-06]
Length = 185
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD + VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGAIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|58040244|ref|YP_192208.1| ribosome recycling factor [Gluconobacter oxydans 621H]
gi|62900775|sp|Q5FPZ4.1|RRF_GLUOX RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|58002658|gb|AAW61552.1| Ribosome Recycling Factor (RRF) [Gluconobacter oxydans 621H]
Length = 188
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI +L R+L+ LR+GRASP +L+ + VE G ++PL+ + ++V +++ L+++ +D
Sbjct: 16 MDGAIESLRRDLSGLRSGRASPNLLEPVRVEAYGSEVPLSQVGSIAVPEARMLTVSVWDR 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI S LGLNP DGQ + IPALT+E + + ++ +E+ K S+R R
Sbjct: 76 TVVGAVERAIRDSGLGLNPSTDGQTVRVPIPALTEERRNELARAASRYAENGKISVRGVR 135
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ ++ K + S + +D MK I +LT +Y+K DDI KE+EI +
Sbjct: 136 RDGMEQTKALEKKSEISQDDMKTWTDAIQKLTDQYIKKVDDIFADKEREIKQ 187
>gi|29829166|ref|NP_823800.1| ribosome recycling factor [Streptomyces avermitilis MA-4680]
gi|34924903|sp|Q82JY0.1|RRF_STRAW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|29606272|dbj|BAC70335.1| putative ribosome recycling factor [Streptomyces avermitilis
MA-4680]
Length = 185
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV ED K SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRKDYIKVAKTKGEDAKVSIRSVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKDAIDKLIKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|408356831|ref|YP_006845362.1| ribosome-recycling factor [Amphibacillus xylanus NBRC 15112]
gi|407727602|dbj|BAM47600.1| ribosome-recycling factor [Amphibacillus xylanus NBRC 15112]
Length = 185
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI + R L +R GRA+P +L+H++V+ G PLN LA ++ +++ + + P+D
Sbjct: 13 MDQAIQSFKRSLATVRAGRANPAILNHVMVDYYGAPTPLNQLATITAPEARLIVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++ E+E AI + LGL P DG + IPALT+E + + KVV K +E+ K +R R
Sbjct: 73 SSIGEVEKAIQKADLGLAPSSDGNIVRIVIPALTEERRKELVKVVGKFAEESKVQVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+++ + E+ T K++K D + + KE EI E
Sbjct: 133 RDANDQLKKNEKDGEITEDELRHYQNEVQAETDKFIKQIDSLVEEKEAEIME 184
>gi|407718211|ref|YP_006795616.1| ribosome recycling factor [Leuconostoc carnosum JB16]
gi|407241967|gb|AFT81617.1| ribosome recycling factor [Leuconostoc carnosum JB16]
Length = 181
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 98/168 (58%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL REL +RTGRA+P +LD I VE G PLN +A +SV +++ L I P+D
Sbjct: 12 MQGAQDALQRELGSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEARILLITPFDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+ AI S LGLNP DG + AIP +T+E + + K V E K S+R R
Sbjct: 72 TVLDEIIRAINVSDLGLNPASDGNVVRLAIPQMTEEGRKDLAKQVKAEGEKAKVSVRNVR 131
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK +P+D + E +I +LT +K+ D I KEKE+
Sbjct: 132 RDAMDSVKK-DKEIPEDDARNAEDDIQKLTDDNIKAIDMIATEKEKEL 178
>gi|340621325|ref|YP_004739776.1| ribosome-releasing factor [Capnocytophaga canimorsus Cc5]
gi|339901590|gb|AEK22669.1| Ribosome-releasing factor [Capnocytophaga canimorsus Cc5]
Length = 184
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 102/168 (60%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+AA+ L + L+ +R G+ASP ML + V+ G + PLN +A VS DS+T++I P++
Sbjct: 16 MQAALAHLDKSLSNIRAGKASPQMLGSVFVDYYGSQTPLNQVANVSAPDSRTITIQPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++ +E AI+ + LG NP +G +I ++P LT+E + + K ED K SIR +R
Sbjct: 76 SMIQPIEKAIMVANLGFNPMNNGDVVIISVPPLTEERRKELVKQAKGECEDAKISIRNAR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q A +KK +S +D K E+ + +LT KY+K D+I KE EI
Sbjct: 136 QDANKEIKKTETS--EDIKKGAEESVQQLTDKYIKKVDEIFVLKEAEI 181
>gi|218295073|ref|ZP_03495909.1| ribosome recycling factor [Thermus aquaticus Y51MC23]
gi|218244276|gb|EED10801.1| ribosome recycling factor [Thermus aquaticus Y51MC23]
Length = 185
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ AL L+ LRTGRA+P +L H+ VE G +PL+ +A VS D++TL + +D
Sbjct: 14 MQKSLEALEHNLSGLRTGRANPALLLHLKVEYYGTPVPLSQIATVSAPDARTLVVQSWDQ 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LK +E AI S LGLNP G L IP LT+E + + K +E+ + +IR R
Sbjct: 74 NALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKELVKAARHYAEEGRIAIRNIR 133
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++AL+ +KK L +D KR E EI ++T +++ D++ + KE EI
Sbjct: 134 REALEKLKKLAKELHLSEDDTKRAEAEIQKITDEFIAKVDELLEKKEAEI 183
>gi|365924994|ref|ZP_09447757.1| ribosome recycling factor [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420266298|ref|ZP_14768780.1| ribosome recycling factor [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394425794|gb|EJE98711.1| ribosome recycling factor [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 187
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL REL +R GRA+ +L+ I+V G PLN +A +S+ +++ L + PYD
Sbjct: 15 MKKAQEALQRELGNIRAGRANASLLNRIMVVYYGAPTPLNQIAQISIPEARVLMVTPYDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK++E AI++S LG++P DG + IP LT+E + + K V +E K ++R R
Sbjct: 75 SSLKDIEHAILASDLGISPANDGSAIRLVIPQLTEERRKEIAKEVKAEAEKAKVAVRNIR 134
Query: 121 QKALDMMKKAG--SSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D KKA L +D + LE++ +LT VKS DDI KEKEI
Sbjct: 135 RDAIDDFKKAQKKGDLTEDDLHNLEEQAQKLTDSSVKSIDDIQADKEKEI 184
>gi|260654918|ref|ZP_05860406.1| ribosome recycling factor [Jonquetella anthropi E3_33 E1]
gi|424844784|ref|ZP_18269395.1| ribosome recycling factor [Jonquetella anthropi DSM 22815]
gi|260630420|gb|EEX48614.1| ribosome recycling factor [Jonquetella anthropi E3_33 E1]
gi|363986222|gb|EHM13052.1| ribosome recycling factor [Jonquetella anthropi DSM 22815]
Length = 183
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I ++ E +RTGRA PG++ + + G PL +A VSVLD++TL I PYD
Sbjct: 10 MQKVIDHMNGEFLGIRTGRAHPGLVGDVKADYYGTPTPLKQMATVSVLDARTLQITPYDQ 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+K +E AI+++ +G+ P VDG+ + ++P LT E + +CK V+K E+ K ++R R
Sbjct: 70 TAVKTIEKAILAANIGVTPVVDGKVIRLSMPELTGERRKELCKYVSKLGEEAKIALRNLR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D KKA + +DQ+K + + T +V D++ K KEKE+ E
Sbjct: 130 RDANDFYKKAEDAGEISEDQLKTELDVVQKETDSFVSKVDELVKEKEKEVME 181
>gi|163786583|ref|ZP_02181031.1| ribosome releasing factor [Flavobacteriales bacterium ALC-1]
gi|159878443|gb|EDP72499.1| ribosome releasing factor [Flavobacteriales bacterium ALC-1]
Length = 184
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 103/168 (61%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M++AI L ++L +R G+ASP ML ++V+ G + PL+ +A V+ D +T+S+ P++
Sbjct: 16 MDSAIKHLEKQLINIRAGKASPSMLGSVMVDYYGSQTPLSQVANVNTPDGRTISVQPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+E+E I+ + LG NP +G+ +I +P LT+E + + K +ED K IR +R
Sbjct: 76 SMLQEIERGIMVANLGFNPMNNGEMVIINVPPLTEERRRDLAKQAKAETEDAKIGIRNAR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A++ +K + + +D K E ++ ELT YVK DDI KEKEI
Sbjct: 136 KDAMNDIK--STDVSEDLQKNAEIDVQELTDSYVKRIDDILDLKEKEI 181
>gi|350567652|ref|ZP_08936060.1| ribosome recycling factor [Propionibacterium avidum ATCC 25577]
gi|348662415|gb|EGY79078.1| ribosome recycling factor [Propionibacterium avidum ATCC 25577]
Length = 184
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +A+ E +RTGRA+P M + I+V+ G PL LA V +++T+ I P+D
Sbjct: 12 MGSAVDHAREEFAAIRTGRANPAMFNKIMVDYYGAPTPLQQLASFQVPEARTVLIAPFDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E A+ S LG+NP DG + +PALT+E + K+ +E+ + ++R R
Sbjct: 72 SCVNEVEKAVRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKAKAEEGRIAVRNVR 131
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + D++KK + +D+M RLEKE+D++T+KYV+ D++ K+KE E+ E
Sbjct: 132 RASNDIVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLKSKESELLE 183
>gi|262202045|ref|YP_003273253.1| ribosome recycling factor [Gordonia bronchialis DSM 43247]
gi|262085392|gb|ACY21360.1| ribosome recycling factor [Gordonia bronchialis DSM 43247]
Length = 185
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ ++ +RTGRA+P M + +++E G P+ +A ++ + + + I PY+
Sbjct: 13 MEKAVSVAKDDMGSIRTGRANPAMFNKVVIEYYGAMTPVTQVASINTPEPRLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TL+++E AI +S LG+NP DG + A+P LT+E + + K ED K SIR R
Sbjct: 73 STLRDIETAIRNSDLGVNPTNDGNVIRVAVPQLTEERRRDLVKQAKGKGEDAKVSIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA+D +K+ +D++ R EKE+D+ T YV+ D++ K KE E+ E
Sbjct: 133 RKAVDELKRIQKDGEAGEDEVTRAEKELDKTTAGYVQQVDELVKHKENELLE 184
>gi|169630269|ref|YP_001703918.1| ribosome recycling factor [Mycobacterium abscessus ATCC 19977]
gi|419709573|ref|ZP_14237041.1| ribosome recycling factor [Mycobacterium abscessus M93]
gi|419715070|ref|ZP_14242477.1| ribosome recycling factor [Mycobacterium abscessus M94]
gi|420864592|ref|ZP_15327981.1| ribosome recycling factor [Mycobacterium abscessus 4S-0303]
gi|420869381|ref|ZP_15332763.1| ribosome recycling factor [Mycobacterium abscessus 4S-0726-RA]
gi|420873826|ref|ZP_15337202.1| ribosome recycling factor [Mycobacterium abscessus 4S-0726-RB]
gi|420910805|ref|ZP_15374117.1| ribosome recycling factor [Mycobacterium abscessus 6G-0125-R]
gi|420917258|ref|ZP_15380561.1| ribosome recycling factor [Mycobacterium abscessus 6G-0125-S]
gi|420922423|ref|ZP_15385719.1| ribosome recycling factor [Mycobacterium abscessus 6G-0728-S]
gi|420928084|ref|ZP_15391365.1| ribosome recycling factor [Mycobacterium abscessus 6G-1108]
gi|420967693|ref|ZP_15430897.1| ribosome recycling factor [Mycobacterium abscessus 3A-0810-R]
gi|420978426|ref|ZP_15441603.1| ribosome recycling factor [Mycobacterium abscessus 6G-0212]
gi|420983809|ref|ZP_15446976.1| ribosome recycling factor [Mycobacterium abscessus 6G-0728-R]
gi|420988234|ref|ZP_15451390.1| ribosome recycling factor [Mycobacterium abscessus 4S-0206]
gi|421008407|ref|ZP_15471517.1| ribosome recycling factor [Mycobacterium abscessus 3A-0119-R]
gi|421013780|ref|ZP_15476859.1| ribosome recycling factor [Mycobacterium abscessus 3A-0122-R]
gi|421018726|ref|ZP_15481783.1| ribosome recycling factor [Mycobacterium abscessus 3A-0122-S]
gi|421024932|ref|ZP_15487976.1| ribosome recycling factor [Mycobacterium abscessus 3A-0731]
gi|421030278|ref|ZP_15493309.1| ribosome recycling factor [Mycobacterium abscessus 3A-0930-R]
gi|421035307|ref|ZP_15498326.1| ribosome recycling factor [Mycobacterium abscessus 3A-0930-S]
gi|421040290|ref|ZP_15503298.1| ribosome recycling factor [Mycobacterium abscessus 4S-0116-R]
gi|421044180|ref|ZP_15507180.1| ribosome recycling factor [Mycobacterium abscessus 4S-0116-S]
gi|238688906|sp|B1MDE3.1|RRF_MYCA9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|169242236|emb|CAM63264.1| Ribosome recycling factor (Ribosome-releasing factor [Mycobacterium
abscessus]
gi|382943454|gb|EIC67768.1| ribosome recycling factor [Mycobacterium abscessus M93]
gi|382944816|gb|EIC69121.1| ribosome recycling factor [Mycobacterium abscessus M94]
gi|392063308|gb|EIT89157.1| ribosome recycling factor [Mycobacterium abscessus 4S-0303]
gi|392065301|gb|EIT91149.1| ribosome recycling factor [Mycobacterium abscessus 4S-0726-RB]
gi|392068851|gb|EIT94698.1| ribosome recycling factor [Mycobacterium abscessus 4S-0726-RA]
gi|392110149|gb|EIU35919.1| ribosome recycling factor [Mycobacterium abscessus 6G-0125-S]
gi|392112799|gb|EIU38568.1| ribosome recycling factor [Mycobacterium abscessus 6G-0125-R]
gi|392127076|gb|EIU52826.1| ribosome recycling factor [Mycobacterium abscessus 6G-0728-S]
gi|392133436|gb|EIU59180.1| ribosome recycling factor [Mycobacterium abscessus 6G-1108]
gi|392162704|gb|EIU88393.1| ribosome recycling factor [Mycobacterium abscessus 6G-0212]
gi|392168805|gb|EIU94483.1| ribosome recycling factor [Mycobacterium abscessus 6G-0728-R]
gi|392182513|gb|EIV08164.1| ribosome recycling factor [Mycobacterium abscessus 4S-0206]
gi|392196555|gb|EIV22171.1| ribosome recycling factor [Mycobacterium abscessus 3A-0119-R]
gi|392201113|gb|EIV26715.1| ribosome recycling factor [Mycobacterium abscessus 3A-0122-R]
gi|392207356|gb|EIV32933.1| ribosome recycling factor [Mycobacterium abscessus 3A-0122-S]
gi|392211729|gb|EIV37295.1| ribosome recycling factor [Mycobacterium abscessus 3A-0731]
gi|392221218|gb|EIV46741.1| ribosome recycling factor [Mycobacterium abscessus 4S-0116-R]
gi|392223498|gb|EIV49020.1| ribosome recycling factor [Mycobacterium abscessus 3A-0930-R]
gi|392225382|gb|EIV50900.1| ribosome recycling factor [Mycobacterium abscessus 3A-0930-S]
gi|392233633|gb|EIV59131.1| ribosome recycling factor [Mycobacterium abscessus 4S-0116-S]
gi|392250200|gb|EIV75674.1| ribosome recycling factor [Mycobacterium abscessus 3A-0810-R]
Length = 185
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ + +RTGRA+PGM ++++ G P+ +A ++V +++ + I PY+
Sbjct: 13 MEKAVTVARDDFATIRTGRANPGMFQRVVIDYYGTPTPITQVAGINVPEARMVVIKPYES 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LK +E AI +S LGLNP DG + AIP LT+E + + K ED K ++R R
Sbjct: 73 NQLKAIEDAIRNSDLGLNPSNDGSIIRVAIPQLTEERRRELVKQAKGKGEDAKVTLRNIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA L+ +KK G + +D++ R EK++D+ T +YV D++ K KE E+ E
Sbjct: 133 RKANDELNRIKKDGEA-GEDEVGRAEKDLDKTTAQYVSQIDELVKHKEGELLE 184
>gi|157150295|ref|YP_001450730.1| ribosome recycling factor [Streptococcus gordonii str. Challis
substr. CH1]
gi|189044081|sp|A8AY70.1|RRF_STRGC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|157075089|gb|ABV09772.1| ribosome recycling factor [Streptococcus gordonii str. Challis
substr. CH1]
Length = 185
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 103/165 (62%), Gaps = 2/165 (1%)
Query: 8 LSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELE 67
L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D ++LK++E
Sbjct: 20 LAREFGAVRAGRANASLLDRISVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDIE 79
Query: 68 CAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMM 127
AI +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 80 RAINASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKIGENAKIAIRNIRRDAMDEA 139
Query: 128 KKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK D++ KEKE+ E
Sbjct: 140 KKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTAHKEKELLE 184
>gi|329889359|ref|ZP_08267702.1| ribosome recycling factor [Brevundimonas diminuta ATCC 11568]
gi|328844660|gb|EGF94224.1| ribosome recycling factor [Brevundimonas diminuta ATCC 11568]
Length = 185
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ AL + LRTGRA+ G+L+ ++VE G PL +A +SV + + +S+N +D
Sbjct: 13 MDKSVAALKDDYAGLRTGRANAGLLEPVVVEAYGATSPLTAVAAISVPEPRMISVNVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI S+ LGLNP VDGQ L IP LT+E + + K+ K +ED K ++R R
Sbjct: 73 GMVVSVEKAIRSAGLGLNPVVDGQTLRIPIPPLTEERRKDLAKLAGKYAEDKKIAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KKA + +D+ K++E E+ + T +K D+ KAKE EI
Sbjct: 133 RDANDELKKAEKAGEISQDEQKKMEAEVQKDTDAAIKRIDETLKAKEVEI 182
>gi|336325817|ref|YP_004605783.1| ribosome recycling factor [Corynebacterium resistens DSM 45100]
gi|336101799|gb|AEI09619.1| Ribosome recycling factor [Corynebacterium resistens DSM 45100]
Length = 185
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +++ ELT +RTGRA+P M + II E GV P+ +A +SV + + L I PY+
Sbjct: 13 MTSSVEHAREELTTIRTGRANPAMFNGIIAEYYGVPTPITQMATISVPEPRMLIIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+T++++E AI +S LG+NP DGQ L +P LT+E + + KV ED K +IR R
Sbjct: 73 STMQDIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRRDLVKVAKSKGEDAKIAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K ++ + K +D++K EK+++++T+ +V+ D + + KEKE+ E
Sbjct: 133 RKGMEGLGKIQKDGEAGEDEVKAAEKDLEKVTQNHVEQVDALVENKEKELME 184
>gi|304439992|ref|ZP_07399885.1| ribosome recycling factor [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371484|gb|EFM25097.1| ribosome recycling factor [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 184
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I L +L +R GRA+P +LD I VE G PLN +A +S +++ L + P+D
Sbjct: 12 MKKSIEVLKDDLLSIRAGRANPALLDKITVEYYGQVTPLNQVAGISAPEARLLVVQPWDQ 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E I+ S LGLNP DG+ + IP LT+E + + K+V K ED K +IR R
Sbjct: 72 SLISVIEKEILKSDLGLNPSNDGKVVRLIIPQLTEERRRDLTKIVKKNGEDTKVAIRNIR 131
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D +KK + +D+ K E ++ ELT KY+K D + KAKE E+ E
Sbjct: 132 RVAIDEVKKLEKDKEISEDERKVAEDKVQELTDKYIKEVDVVTKAKEDELME 183
>gi|299534751|ref|ZP_07048081.1| ribosome recycling factor [Lysinibacillus fusiformis ZC1]
gi|424737078|ref|ZP_18165534.1| ribosome recycling factor [Lysinibacillus fusiformis ZB2]
gi|298729839|gb|EFI70384.1| ribosome recycling factor [Lysinibacillus fusiformis ZC1]
gi|422948910|gb|EKU43286.1| ribosome recycling factor [Lysinibacillus fusiformis ZB2]
Length = 185
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I A SREL +R GRA+ +LD I V+ G P+N LA VS+ +++ L I PYD
Sbjct: 13 MNKTIAAFSRELASIRAGRANASLLDRISVDYYGAATPINQLAGVSIPEARLLVITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L ++E AI+ S +G+ P DG + IPALT+E + + K V K +ED K ++R R
Sbjct: 73 SILGDIEKAIMKSDIGITPTNDGSVIRLMIPALTEERRKDLVKQVKKEAEDAKIAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D ++ ++I +LT +++ D + K KEKEI E
Sbjct: 133 RDANDDLKKLEKAGEITEDDLRGYGEDIQKLTDEFIVKVDQVAKDKEKEILE 184
>gi|220912157|ref|YP_002487466.1| ribosome recycling factor [Arthrobacter chlorophenolicus A6]
gi|254809488|sp|B8HFN8.1|RRF_ARTCA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|219859035|gb|ACL39377.1| ribosome recycling factor [Arthrobacter chlorophenolicus A6]
Length = 185
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ + +RTGRA+PG+ + ++V+ G PL LA ++ D++T+ I P+D
Sbjct: 13 MDKAVEVAKEDFASIRTGRANPGLYNRVLVDYYGSPTPLQQLASFAIPDARTILITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+++E A+ S +G NP DG + IP LTKE + K+V ED K SIR R
Sbjct: 73 TALRDIERALSDSEVGANPSNDGNVIRITIPELTKERRKEYVKIVKTKGEDAKVSIRNIR 132
Query: 121 QK---ALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K ALD + K G + +D+ R EKE+D LTK +V D++ K KE E+ E
Sbjct: 133 RKAKEALDRLVKDGEA-GEDEGTRAEKELDGLTKAHVDGIDELLKRKEAELLE 184
>gi|381166873|ref|ZP_09876086.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Phaeospirillum molischianum DSM 120]
gi|380683925|emb|CCG40898.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Phaeospirillum molischianum DSM 120]
Length = 190
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M++A+ L ++ + LR+GRAS +LD ++VE G MPL+ V V + + L++ +D
Sbjct: 18 MDSAVEVLKKDFSGLRSGRASTNLLDPVVVEAYGQTMPLSQCGTVGVPEPRMLTVQVWDK 77
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+K +E AI ++ LGLNP+ DGQ + IP L +E + + KV K +E + S+R R
Sbjct: 78 GQVKAVEKAIANAGLGLNPQADGQLIRVPIPPLNEERRKELQKVAGKYAEAARISVRNVR 137
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KK L +D++K+ EKEI +T + +K DD+ +KEKEI
Sbjct: 138 RDGMDSLKKMEKDGHLSEDEIKKHEKEIQVVTDETIKKIDDLLTSKEKEI 187
>gi|229495839|ref|ZP_04389565.1| ribosome recycling factor [Porphyromonas endodontalis ATCC 35406]
gi|229317152|gb|EEN83059.1| ribosome recycling factor [Porphyromonas endodontalis ATCC 35406]
Length = 187
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L +L +R G+A+P +LD I+V G PLN + V+V D++T+ I P++
Sbjct: 15 MQNAIEYLDEKLAHIRAGKANPKILDDIMVSYYGTMTPLNQVGTVTVPDARTIVITPWEK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+K++E AI+ SPLG+ P +G + IP LT+E + + K V E+ K S+R +R
Sbjct: 75 KIIKDIEKAIIDSPLGIMPENNGDLIRIGIPPLTEERRKVLVKQVKGEVEEAKISVRNAR 134
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK+ P+D K E I +L KY+ D++ AKEKEI
Sbjct: 135 RDAIDAVKKSVKADGTPEDVAKDAEAAIQKLHDKYISRCDELFAAKEKEI 184
>gi|339486116|ref|YP_004700644.1| ribosome recycling factor [Pseudomonas putida S16]
gi|338836959|gb|AEJ11764.1| ribosome recycling factor [Pseudomonas putida S16]
Length = 185
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ AL+R L +RTGRA P +LD + V G +MPLN +A ++V D++TL I +D
Sbjct: 13 MTKSLEALARNLAAIRTGRAHPSILDSVKVTAWGSEMPLNQVAAITVEDARTLKIVAHDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N +E AI++S LGLNP G + +PALT+E + K + +ED K ++R R
Sbjct: 73 NLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQASGVAEDAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ AL +KK + +D+ +R EI +LT KYV D KAKEK++
Sbjct: 133 RDALADLKKLTKDKEISEDEERRAADEIQKLTDKYVAEVDAAFKAKEKDL 182
>gi|386346592|ref|YP_006044841.1| Ribosome-recycling factor [Spirochaeta thermophila DSM 6578]
gi|339411559|gb|AEJ61124.1| Ribosome-recycling factor [Spirochaeta thermophila DSM 6578]
Length = 184
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ AL +L +RTGRA+P + + I V G + PLN +A +S + + + I P+D
Sbjct: 12 MKKSVHALKDQLATIRTGRATPALFEKITVNYYGQQTPLNQVASISAPEPRLVVIQPWDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+E+E AI SS L LNP DG+ L IP LT+E + K+ +E + +IR R
Sbjct: 72 SVLQEIEKAIQSSDLSLNPVNDGKVLRINIPPLTEERRKEYIKLAKNVAEQSRVAIRNIR 131
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + +KKA L +D+ KR E+EI +LT+KY+ +++ +AKEKEI E
Sbjct: 132 RDANEALKKAEKEGRLSEDERKRGEEEIQKLTQKYIDEINNLLEAKEKEIME 183
>gi|160915170|ref|ZP_02077383.1| hypothetical protein EUBDOL_01178 [Eubacterium dolichum DSM 3991]
gi|158432969|gb|EDP11258.1| ribosome recycling factor [Eubacterium dolichum DSM 3991]
Length = 180
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M++A+ L +EL +RTG A+ +L+H+ E G MP+N +A + V++ + L I PYD
Sbjct: 11 MQSAVEVLEQELKTIRTGMANAAILEHVTFEYYGSPMPINQMAGIKVVEGRQLMITPYDK 70
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
TLK++E AI S +GL P+ DG + +PALT+E + K +K E+ K +IR R
Sbjct: 71 GTLKDIERAIAMSDIGLVPQNDGDCIRLNVPALTEERRKEFVKDASKMGENAKIAIRNVR 130
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK L +D+ K L+ +I +LT K+VK + AK KEI
Sbjct: 131 RDANDTIKK-DKELTEDESKDLQDKIQKLTDKFVKLVEQAVDAKSKEI 177
>gi|262277277|ref|ZP_06055070.1| ribosome recycling factor [alpha proteobacterium HIMB114]
gi|262224380|gb|EEY74839.1| ribosome recycling factor [alpha proteobacterium HIMB114]
Length = 186
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME +IV+L ++L+ +RTGRA MLD + VE G MP+N +A ++V D +T+SI +D
Sbjct: 14 MEDSIVSLGKDLSTVRTGRAHSSMLDLVKVEVYGQSMPINQVATITVTDPQTISIQVWDA 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N +K E AI S L LNP +DGQ L +P L ++ + + K+V + SE +K SIR R
Sbjct: 74 NNVKFCEKAIRESDLNLNPVIDGQLLRIPVPKLNEDRRKELSKIVNQQSEKIKISIRNVR 133
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKY 153
+ +D +KK ++ +D+ K+L E+ ++T +
Sbjct: 134 RTGMDFLKKEEKNKNISEDESKKLSNELQKITDDF 168
>gi|168483015|ref|ZP_02707967.1| ribosome recycling factor [Streptococcus pneumoniae CDC1873-00]
gi|417696135|ref|ZP_12345314.1| ribosome recycling factor [Streptococcus pneumoniae GA47368]
gi|418091689|ref|ZP_12728831.1| ribosome recycling factor [Streptococcus pneumoniae GA44452]
gi|418102665|ref|ZP_12739741.1| ribosome recycling factor [Streptococcus pneumoniae NP070]
gi|418107336|ref|ZP_12744374.1| ribosome recycling factor [Streptococcus pneumoniae GA41410]
gi|418109911|ref|ZP_12746936.1| ribosome recycling factor [Streptococcus pneumoniae GA49447]
gi|418161996|ref|ZP_12798683.1| ribosome recycling factor [Streptococcus pneumoniae GA17328]
gi|418169046|ref|ZP_12805690.1| ribosome recycling factor [Streptococcus pneumoniae GA19077]
gi|418175761|ref|ZP_12812358.1| ribosome recycling factor [Streptococcus pneumoniae GA41437]
gi|418218689|ref|ZP_12845356.1| ribosome recycling factor [Streptococcus pneumoniae NP127]
gi|418238521|ref|ZP_12865076.1| ribosome recycling factor [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419422825|ref|ZP_13963041.1| ribosome recycling factor [Streptococcus pneumoniae GA43264]
gi|419459788|ref|ZP_13999721.1| ribosome recycling factor [Streptococcus pneumoniae GA02270]
gi|419462106|ref|ZP_14002016.1| ribosome recycling factor [Streptococcus pneumoniae GA02714]
gi|419475337|ref|ZP_14015178.1| ribosome recycling factor [Streptococcus pneumoniae GA14688]
gi|419486493|ref|ZP_14026259.1| ribosome recycling factor [Streptococcus pneumoniae GA44128]
gi|419488907|ref|ZP_14028657.1| ribosome recycling factor [Streptococcus pneumoniae GA44386]
gi|419525694|ref|ZP_14065258.1| ribosome recycling factor [Streptococcus pneumoniae GA14373]
gi|421208766|ref|ZP_15665788.1| ribosome recycling factor [Streptococcus pneumoniae 2070005]
gi|421224810|ref|ZP_15681554.1| ribosome recycling factor [Streptococcus pneumoniae 2070768]
gi|421240503|ref|ZP_15697050.1| ribosome recycling factor [Streptococcus pneumoniae 2080913]
gi|421272597|ref|ZP_15723441.1| ribosome recycling factor [Streptococcus pneumoniae SPAR55]
gi|172043555|gb|EDT51601.1| ribosome recycling factor [Streptococcus pneumoniae CDC1873-00]
gi|332201410|gb|EGJ15480.1| ribosome recycling factor [Streptococcus pneumoniae GA47368]
gi|353763789|gb|EHD44339.1| ribosome recycling factor [Streptococcus pneumoniae GA44452]
gi|353776831|gb|EHD57306.1| ribosome recycling factor [Streptococcus pneumoniae NP070]
gi|353779519|gb|EHD59983.1| ribosome recycling factor [Streptococcus pneumoniae GA41410]
gi|353782823|gb|EHD63253.1| ribosome recycling factor [Streptococcus pneumoniae GA49447]
gi|353828379|gb|EHE08519.1| ribosome recycling factor [Streptococcus pneumoniae GA17328]
gi|353834888|gb|EHE14984.1| ribosome recycling factor [Streptococcus pneumoniae GA19077]
gi|353842329|gb|EHE22376.1| ribosome recycling factor [Streptococcus pneumoniae GA41437]
gi|353875344|gb|EHE55196.1| ribosome recycling factor [Streptococcus pneumoniae NP127]
gi|353894271|gb|EHE74013.1| ribosome recycling factor [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379532814|gb|EHY98038.1| ribosome recycling factor [Streptococcus pneumoniae GA02270]
gi|379532952|gb|EHY98175.1| ribosome recycling factor [Streptococcus pneumoniae GA02714]
gi|379559168|gb|EHZ24198.1| ribosome recycling factor [Streptococcus pneumoniae GA14373]
gi|379561675|gb|EHZ26692.1| ribosome recycling factor [Streptococcus pneumoniae GA14688]
gi|379587800|gb|EHZ52647.1| ribosome recycling factor [Streptococcus pneumoniae GA44386]
gi|379588108|gb|EHZ52954.1| ribosome recycling factor [Streptococcus pneumoniae GA44128]
gi|379588283|gb|EHZ53128.1| ribosome recycling factor [Streptococcus pneumoniae GA43264]
gi|395575722|gb|EJG36287.1| ribosome recycling factor [Streptococcus pneumoniae 2070005]
gi|395590598|gb|EJG50902.1| ribosome recycling factor [Streptococcus pneumoniae 2070768]
gi|395609085|gb|EJG69175.1| ribosome recycling factor [Streptococcus pneumoniae 2080913]
gi|395875706|gb|EJG86784.1| ribosome recycling factor [Streptococcus pneumoniae SPAR55]
Length = 185
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD + VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASELGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|148984686|ref|ZP_01817954.1| ribosome recycling factor [Streptococcus pneumoniae SP3-BS71]
gi|148988384|ref|ZP_01819831.1| ribosome recycling factor [Streptococcus pneumoniae SP6-BS73]
gi|148998620|ref|ZP_01826060.1| ribosome recycling factor [Streptococcus pneumoniae SP11-BS70]
gi|149002494|ref|ZP_01827428.1| ribosome recycling factor [Streptococcus pneumoniae SP14-BS69]
gi|149006380|ref|ZP_01830092.1| ribosome recycling factor [Streptococcus pneumoniae SP18-BS74]
gi|168485896|ref|ZP_02710404.1| ribosome recycling factor [Streptococcus pneumoniae CDC1087-00]
gi|168575607|ref|ZP_02721543.1| ribosome recycling factor [Streptococcus pneumoniae MLV-016]
gi|169832481|ref|YP_001694393.1| ribosome recycling factor [Streptococcus pneumoniae Hungary19A-6]
gi|194397625|ref|YP_002037583.1| ribosome recycling factor [Streptococcus pneumoniae G54]
gi|221231712|ref|YP_002510864.1| ribosome recycling factor [Streptococcus pneumoniae ATCC 700669]
gi|225854450|ref|YP_002735962.1| ribosome recycling factor [Streptococcus pneumoniae JJA]
gi|225861166|ref|YP_002742675.1| ribosome recycling factor [Streptococcus pneumoniae Taiwan19F-14]
gi|237650519|ref|ZP_04524771.1| ribosome recycling factor [Streptococcus pneumoniae CCRI 1974]
gi|237820813|ref|ZP_04596658.1| ribosome recycling factor [Streptococcus pneumoniae CCRI 1974M2]
gi|298230564|ref|ZP_06964245.1| ribosome recycling factor [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254562|ref|ZP_06978148.1| ribosome recycling factor [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298503047|ref|YP_003724987.1| ribosome recycling factor [Streptococcus pneumoniae TCH8431/19A]
gi|307067602|ref|YP_003876568.1| ribosome recycling factor [Streptococcus pneumoniae AP200]
gi|307127503|ref|YP_003879534.1| ribosome recycling factor [Streptococcus pneumoniae 670-6B]
gi|387757336|ref|YP_006064315.1| ribosome recycling factor [Streptococcus pneumoniae OXC141]
gi|387788384|ref|YP_006253452.1| ribosome recycling factor [Streptococcus pneumoniae ST556]
gi|415698148|ref|ZP_11457059.1| ribosome recycling factor [Streptococcus pneumoniae 459-5]
gi|415749343|ref|ZP_11477287.1| ribosome recycling factor [Streptococcus pneumoniae SV35]
gi|415752027|ref|ZP_11479138.1| ribosome recycling factor [Streptococcus pneumoniae SV36]
gi|417312514|ref|ZP_12099226.1| ribosome recycling factor [Streptococcus pneumoniae GA04375]
gi|417676699|ref|ZP_12326110.1| ribosome recycling factor [Streptococcus pneumoniae GA17545]
gi|417686387|ref|ZP_12335665.1| ribosome recycling factor [Streptococcus pneumoniae GA41301]
gi|417698359|ref|ZP_12347532.1| ribosome recycling factor [Streptococcus pneumoniae GA41317]
gi|418073726|ref|ZP_12710984.1| ribosome recycling factor [Streptococcus pneumoniae GA11184]
gi|418076048|ref|ZP_12713287.1| ribosome recycling factor [Streptococcus pneumoniae GA47502]
gi|418078435|ref|ZP_12715658.1| ribosome recycling factor [Streptococcus pneumoniae 4027-06]
gi|418080399|ref|ZP_12717611.1| ribosome recycling factor [Streptococcus pneumoniae 6735-05]
gi|418082868|ref|ZP_12720069.1| ribosome recycling factor [Streptococcus pneumoniae GA44288]
gi|418085009|ref|ZP_12722193.1| ribosome recycling factor [Streptococcus pneumoniae GA47281]
gi|418089338|ref|ZP_12726495.1| ribosome recycling factor [Streptococcus pneumoniae GA43265]
gi|418093772|ref|ZP_12730901.1| ribosome recycling factor [Streptococcus pneumoniae GA49138]
gi|418096054|ref|ZP_12733169.1| ribosome recycling factor [Streptococcus pneumoniae GA16531]
gi|418098315|ref|ZP_12735414.1| ribosome recycling factor [Streptococcus pneumoniae 6901-05]
gi|418100770|ref|ZP_12737856.1| ribosome recycling factor [Streptococcus pneumoniae 7286-06]
gi|418105004|ref|ZP_12742063.1| ribosome recycling factor [Streptococcus pneumoniae GA44500]
gi|418112298|ref|ZP_12749300.1| ribosome recycling factor [Streptococcus pneumoniae GA41538]
gi|418114441|ref|ZP_12751431.1| ribosome recycling factor [Streptococcus pneumoniae 5787-06]
gi|418116681|ref|ZP_12753652.1| ribosome recycling factor [Streptococcus pneumoniae 6963-05]
gi|418118767|ref|ZP_12755724.1| ribosome recycling factor [Streptococcus pneumoniae GA18523]
gi|418121017|ref|ZP_12757963.1| ribosome recycling factor [Streptococcus pneumoniae GA44194]
gi|418123215|ref|ZP_12760149.1| ribosome recycling factor [Streptococcus pneumoniae GA44378]
gi|418127802|ref|ZP_12764698.1| ribosome recycling factor [Streptococcus pneumoniae NP170]
gi|418130109|ref|ZP_12766993.1| ribosome recycling factor [Streptococcus pneumoniae GA07643]
gi|418135004|ref|ZP_12771861.1| ribosome recycling factor [Streptococcus pneumoniae GA11426]
gi|418136976|ref|ZP_12773818.1| ribosome recycling factor [Streptococcus pneumoniae GA11663]
gi|418141530|ref|ZP_12778343.1| ribosome recycling factor [Streptococcus pneumoniae GA13455]
gi|418143755|ref|ZP_12780555.1| ribosome recycling factor [Streptococcus pneumoniae GA13494]
gi|418146166|ref|ZP_12782948.1| ribosome recycling factor [Streptococcus pneumoniae GA13637]
gi|418148370|ref|ZP_12785135.1| ribosome recycling factor [Streptococcus pneumoniae GA13856]
gi|418150408|ref|ZP_12787159.1| ribosome recycling factor [Streptococcus pneumoniae GA14798]
gi|418152675|ref|ZP_12789415.1| ribosome recycling factor [Streptococcus pneumoniae GA16121]
gi|418154979|ref|ZP_12791710.1| ribosome recycling factor [Streptococcus pneumoniae GA16242]
gi|418157592|ref|ZP_12794308.1| ribosome recycling factor [Streptococcus pneumoniae GA16833]
gi|418159621|ref|ZP_12796320.1| ribosome recycling factor [Streptococcus pneumoniae GA17227]
gi|418164804|ref|ZP_12801474.1| ribosome recycling factor [Streptococcus pneumoniae GA17371]
gi|418171460|ref|ZP_12808084.1| ribosome recycling factor [Streptococcus pneumoniae GA19451]
gi|418173314|ref|ZP_12809928.1| ribosome recycling factor [Streptococcus pneumoniae GA41277]
gi|418177974|ref|ZP_12814558.1| ribosome recycling factor [Streptococcus pneumoniae GA41565]
gi|418182574|ref|ZP_12819135.1| ribosome recycling factor [Streptococcus pneumoniae GA43380]
gi|418184760|ref|ZP_12821307.1| ribosome recycling factor [Streptococcus pneumoniae GA47283]
gi|418186956|ref|ZP_12823485.1| ribosome recycling factor [Streptococcus pneumoniae GA47360]
gi|418189176|ref|ZP_12825691.1| ribosome recycling factor [Streptococcus pneumoniae GA47373]
gi|418197768|ref|ZP_12834231.1| ribosome recycling factor [Streptococcus pneumoniae GA47778]
gi|418216393|ref|ZP_12843117.1| ribosome recycling factor [Streptococcus pneumoniae
Netherlands15B-37]
gi|418223525|ref|ZP_12850165.1| ribosome recycling factor [Streptococcus pneumoniae 5185-06]
gi|418225368|ref|ZP_12851997.1| ribosome recycling factor [Streptococcus pneumoniae NP112]
gi|418227525|ref|ZP_12854144.1| ribosome recycling factor [Streptococcus pneumoniae 3063-00]
gi|418229691|ref|ZP_12856297.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP01]
gi|418232012|ref|ZP_12858599.1| ribosome recycling factor [Streptococcus pneumoniae GA07228]
gi|418236451|ref|ZP_12863019.1| ribosome recycling factor [Streptococcus pneumoniae GA19690]
gi|419424966|ref|ZP_13965165.1| ribosome recycling factor [Streptococcus pneumoniae 7533-05]
gi|419427390|ref|ZP_13967573.1| ribosome recycling factor [Streptococcus pneumoniae 5652-06]
gi|419429102|ref|ZP_13969269.1| ribosome recycling factor [Streptococcus pneumoniae GA11856]
gi|419431340|ref|ZP_13971485.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP05]
gi|419433598|ref|ZP_13973716.1| ribosome recycling factor [Streptococcus pneumoniae GA40183]
gi|419435808|ref|ZP_13975901.1| ribosome recycling factor [Streptococcus pneumoniae 8190-05]
gi|419438041|ref|ZP_13978111.1| ribosome recycling factor [Streptococcus pneumoniae GA13499]
gi|419440160|ref|ZP_13980212.1| ribosome recycling factor [Streptococcus pneumoniae GA40410]
gi|419444841|ref|ZP_13984856.1| ribosome recycling factor [Streptococcus pneumoniae GA19923]
gi|419446985|ref|ZP_13986990.1| ribosome recycling factor [Streptococcus pneumoniae 7879-04]
gi|419448581|ref|ZP_13988578.1| ribosome recycling factor [Streptococcus pneumoniae 4075-00]
gi|419451279|ref|ZP_13991265.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP02]
gi|419453150|ref|ZP_13993123.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP03]
gi|419457323|ref|ZP_13997268.1| ribosome recycling factor [Streptococcus pneumoniae GA02254]
gi|419463981|ref|ZP_14003874.1| ribosome recycling factor [Streptococcus pneumoniae GA04175]
gi|419466387|ref|ZP_14006270.1| ribosome recycling factor [Streptococcus pneumoniae GA05248]
gi|419470899|ref|ZP_14010758.1| ribosome recycling factor [Streptococcus pneumoniae GA07914]
gi|419473006|ref|ZP_14012857.1| ribosome recycling factor [Streptococcus pneumoniae GA13430]
gi|419477609|ref|ZP_14017434.1| ribosome recycling factor [Streptococcus pneumoniae GA18068]
gi|419481967|ref|ZP_14021760.1| ribosome recycling factor [Streptococcus pneumoniae GA40563]
gi|419490864|ref|ZP_14030604.1| ribosome recycling factor [Streptococcus pneumoniae GA47179]
gi|419493085|ref|ZP_14032812.1| ribosome recycling factor [Streptococcus pneumoniae GA47210]
gi|419497127|ref|ZP_14036837.1| ribosome recycling factor [Streptococcus pneumoniae GA47522]
gi|419501671|ref|ZP_14041357.1| ribosome recycling factor [Streptococcus pneumoniae GA47628]
gi|419503758|ref|ZP_14043427.1| ribosome recycling factor [Streptococcus pneumoniae GA47760]
gi|419505878|ref|ZP_14045539.1| ribosome recycling factor [Streptococcus pneumoniae GA49194]
gi|419510566|ref|ZP_14050210.1| ribosome recycling factor [Streptococcus pneumoniae NP141]
gi|419512341|ref|ZP_14051975.1| ribosome recycling factor [Streptococcus pneumoniae GA05578]
gi|419516619|ref|ZP_14056237.1| ribosome recycling factor [Streptococcus pneumoniae GA02506]
gi|419518734|ref|ZP_14058341.1| ribosome recycling factor [Streptococcus pneumoniae GA08825]
gi|419520879|ref|ZP_14060475.1| ribosome recycling factor [Streptococcus pneumoniae GA05245]
gi|419527665|ref|ZP_14067208.1| ribosome recycling factor [Streptococcus pneumoniae GA17719]
gi|419530251|ref|ZP_14069781.1| ribosome recycling factor [Streptococcus pneumoniae GA40028]
gi|419532174|ref|ZP_14071691.1| ribosome recycling factor [Streptococcus pneumoniae GA47794]
gi|419534408|ref|ZP_14073911.1| ribosome recycling factor [Streptococcus pneumoniae GA17457]
gi|421211048|ref|ZP_15668032.1| ribosome recycling factor [Streptococcus pneumoniae 2070035]
gi|421212970|ref|ZP_15669931.1| ribosome recycling factor [Streptococcus pneumoniae 2070108]
gi|421215174|ref|ZP_15672102.1| ribosome recycling factor [Streptococcus pneumoniae 2070109]
gi|421217464|ref|ZP_15674365.1| ribosome recycling factor [Streptococcus pneumoniae 2070335]
gi|421231716|ref|ZP_15688361.1| ribosome recycling factor [Streptococcus pneumoniae 2080076]
gi|421233928|ref|ZP_15690550.1| ribosome recycling factor [Streptococcus pneumoniae 2061617]
gi|421236088|ref|ZP_15692689.1| ribosome recycling factor [Streptococcus pneumoniae 2071004]
gi|421238576|ref|ZP_15695144.1| ribosome recycling factor [Streptococcus pneumoniae 2071247]
gi|421242894|ref|ZP_15699415.1| ribosome recycling factor [Streptococcus pneumoniae 2081074]
gi|421244766|ref|ZP_15701267.1| ribosome recycling factor [Streptococcus pneumoniae 2081685]
gi|421249237|ref|ZP_15705699.1| ribosome recycling factor [Streptococcus pneumoniae 2082239]
gi|421270594|ref|ZP_15721450.1| ribosome recycling factor [Streptococcus pneumoniae SPAR48]
gi|421274846|ref|ZP_15725678.1| ribosome recycling factor [Streptococcus pneumoniae GA52612]
gi|421280930|ref|ZP_15731728.1| ribosome recycling factor [Streptococcus pneumoniae GA04672]
gi|421283134|ref|ZP_15733921.1| ribosome recycling factor [Streptococcus pneumoniae GA04216]
gi|421298411|ref|ZP_15749099.1| ribosome recycling factor [Streptococcus pneumoniae GA60080]
gi|421304899|ref|ZP_15755555.1| ribosome recycling factor [Streptococcus pneumoniae GA62331]
gi|421307214|ref|ZP_15757859.1| ribosome recycling factor [Streptococcus pneumoniae GA60132]
gi|421314111|ref|ZP_15764701.1| ribosome recycling factor [Streptococcus pneumoniae GA47562]
gi|226749942|sp|B5E448.1|RRF_STRP4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|238688288|sp|B1IBA8.1|RRF_STRPI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809533|sp|B8ZP45.1|RRF_STRPJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809535|sp|C1CDU1.1|RRF_STRZJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809537|sp|C1CRV3.1|RRF_STRZT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|147755618|gb|EDK62665.1| ribosome recycling factor [Streptococcus pneumoniae SP11-BS70]
gi|147759431|gb|EDK66423.1| ribosome recycling factor [Streptococcus pneumoniae SP14-BS69]
gi|147762157|gb|EDK69119.1| ribosome recycling factor [Streptococcus pneumoniae SP18-BS74]
gi|147923077|gb|EDK74192.1| ribosome recycling factor [Streptococcus pneumoniae SP3-BS71]
gi|147926065|gb|EDK77139.1| ribosome recycling factor [Streptococcus pneumoniae SP6-BS73]
gi|168994983|gb|ACA35595.1| ribosome recycling factor [Streptococcus pneumoniae Hungary19A-6]
gi|183571057|gb|EDT91585.1| ribosome recycling factor [Streptococcus pneumoniae CDC1087-00]
gi|183578469|gb|EDT98997.1| ribosome recycling factor [Streptococcus pneumoniae MLV-016]
gi|194357292|gb|ACF55740.1| ribosome recycling factor [Streptococcus pneumoniae G54]
gi|220674172|emb|CAR68698.1| ribosome recycling factor [Streptococcus pneumoniae ATCC 700669]
gi|225723622|gb|ACO19475.1| ribosome recycling factor [Streptococcus pneumoniae JJA]
gi|225727526|gb|ACO23377.1| ribosome recycling factor [Streptococcus pneumoniae Taiwan19F-14]
gi|298238642|gb|ADI69773.1| ribosome recycling factor [Streptococcus pneumoniae TCH8431/19A]
gi|301799925|emb|CBW32506.1| ribosome recycling factor [Streptococcus pneumoniae OXC141]
gi|306409139|gb|ADM84566.1| Ribosome recycling factor [Streptococcus pneumoniae AP200]
gi|306484565|gb|ADM91434.1| ribosome recycling factor [Streptococcus pneumoniae 670-6B]
gi|327389222|gb|EGE87567.1| ribosome recycling factor [Streptococcus pneumoniae GA04375]
gi|332075559|gb|EGI86027.1| ribosome recycling factor [Streptococcus pneumoniae GA17545]
gi|332076224|gb|EGI86690.1| ribosome recycling factor [Streptococcus pneumoniae GA41301]
gi|332202800|gb|EGJ16869.1| ribosome recycling factor [Streptococcus pneumoniae GA41317]
gi|353747626|gb|EHD28282.1| ribosome recycling factor [Streptococcus pneumoniae 4027-06]
gi|353749837|gb|EHD30480.1| ribosome recycling factor [Streptococcus pneumoniae GA47502]
gi|353750573|gb|EHD31211.1| ribosome recycling factor [Streptococcus pneumoniae GA11184]
gi|353752939|gb|EHD33563.1| ribosome recycling factor [Streptococcus pneumoniae 6735-05]
gi|353756781|gb|EHD37380.1| ribosome recycling factor [Streptococcus pneumoniae GA44288]
gi|353758704|gb|EHD39292.1| ribosome recycling factor [Streptococcus pneumoniae GA47281]
gi|353762024|gb|EHD42587.1| ribosome recycling factor [Streptococcus pneumoniae GA43265]
gi|353765648|gb|EHD46190.1| ribosome recycling factor [Streptococcus pneumoniae GA49138]
gi|353769675|gb|EHD50191.1| ribosome recycling factor [Streptococcus pneumoniae 6901-05]
gi|353771041|gb|EHD51552.1| ribosome recycling factor [Streptococcus pneumoniae GA16531]
gi|353772706|gb|EHD53211.1| ribosome recycling factor [Streptococcus pneumoniae 7286-06]
gi|353778074|gb|EHD58544.1| ribosome recycling factor [Streptococcus pneumoniae GA44500]
gi|353784164|gb|EHD64585.1| ribosome recycling factor [Streptococcus pneumoniae GA41538]
gi|353787183|gb|EHD67590.1| ribosome recycling factor [Streptococcus pneumoniae 5787-06]
gi|353789658|gb|EHD70050.1| ribosome recycling factor [Streptococcus pneumoniae 6963-05]
gi|353790719|gb|EHD71100.1| ribosome recycling factor [Streptococcus pneumoniae GA18523]
gi|353793844|gb|EHD74203.1| ribosome recycling factor [Streptococcus pneumoniae GA44194]
gi|353797302|gb|EHD77637.1| ribosome recycling factor [Streptococcus pneumoniae GA44378]
gi|353800263|gb|EHD80577.1| ribosome recycling factor [Streptococcus pneumoniae NP170]
gi|353803401|gb|EHD83693.1| ribosome recycling factor [Streptococcus pneumoniae GA07643]
gi|353805781|gb|EHD86055.1| ribosome recycling factor [Streptococcus pneumoniae GA13455]
gi|353809496|gb|EHD89756.1| ribosome recycling factor [Streptococcus pneumoniae GA13494]
gi|353813045|gb|EHD93278.1| ribosome recycling factor [Streptococcus pneumoniae GA13856]
gi|353814962|gb|EHD95184.1| ribosome recycling factor [Streptococcus pneumoniae GA13637]
gi|353815916|gb|EHD96128.1| ribosome recycling factor [Streptococcus pneumoniae GA14798]
gi|353819320|gb|EHD99518.1| ribosome recycling factor [Streptococcus pneumoniae GA16121]
gi|353821354|gb|EHE01530.1| ribosome recycling factor [Streptococcus pneumoniae GA17227]
gi|353823271|gb|EHE03446.1| ribosome recycling factor [Streptococcus pneumoniae GA16242]
gi|353824040|gb|EHE04214.1| ribosome recycling factor [Streptococcus pneumoniae GA16833]
gi|353829665|gb|EHE09796.1| ribosome recycling factor [Streptococcus pneumoniae GA17371]
gi|353835197|gb|EHE15291.1| ribosome recycling factor [Streptococcus pneumoniae GA19451]
gi|353840013|gb|EHE20087.1| ribosome recycling factor [Streptococcus pneumoniae GA41277]
gi|353844748|gb|EHE24791.1| ribosome recycling factor [Streptococcus pneumoniae GA41565]
gi|353850811|gb|EHE30815.1| ribosome recycling factor [Streptococcus pneumoniae GA43380]
gi|353851296|gb|EHE31292.1| ribosome recycling factor [Streptococcus pneumoniae GA47283]
gi|353852781|gb|EHE32767.1| ribosome recycling factor [Streptococcus pneumoniae GA47360]
gi|353856318|gb|EHE36287.1| ribosome recycling factor [Streptococcus pneumoniae GA47373]
gi|353863924|gb|EHE43843.1| ribosome recycling factor [Streptococcus pneumoniae GA47778]
gi|353873444|gb|EHE53305.1| ribosome recycling factor [Streptococcus pneumoniae
Netherlands15B-37]
gi|353878323|gb|EHE58153.1| ribosome recycling factor [Streptococcus pneumoniae 5185-06]
gi|353882676|gb|EHE62487.1| ribosome recycling factor [Streptococcus pneumoniae NP112]
gi|353883126|gb|EHE62935.1| ribosome recycling factor [Streptococcus pneumoniae 3063-00]
gi|353886739|gb|EHE66519.1| ribosome recycling factor [Streptococcus pneumoniae GA07228]
gi|353889597|gb|EHE69367.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP01]
gi|353892683|gb|EHE72431.1| ribosome recycling factor [Streptococcus pneumoniae GA19690]
gi|353901603|gb|EHE77135.1| ribosome recycling factor [Streptococcus pneumoniae GA11663]
gi|353902241|gb|EHE77771.1| ribosome recycling factor [Streptococcus pneumoniae GA11426]
gi|379138126|gb|AFC94917.1| ribosome recycling factor [Streptococcus pneumoniae ST556]
gi|379532321|gb|EHY97550.1| ribosome recycling factor [Streptococcus pneumoniae GA02254]
gi|379538046|gb|EHZ03227.1| ribosome recycling factor [Streptococcus pneumoniae GA13499]
gi|379539200|gb|EHZ04379.1| ribosome recycling factor [Streptococcus pneumoniae GA04175]
gi|379539893|gb|EHZ05070.1| ribosome recycling factor [Streptococcus pneumoniae GA05245]
gi|379544510|gb|EHZ09654.1| ribosome recycling factor [Streptococcus pneumoniae GA05248]
gi|379545615|gb|EHZ10754.1| ribosome recycling factor [Streptococcus pneumoniae GA07914]
gi|379551050|gb|EHZ16145.1| ribosome recycling factor [Streptococcus pneumoniae GA11856]
gi|379552513|gb|EHZ17602.1| ribosome recycling factor [Streptococcus pneumoniae GA13430]
gi|379565142|gb|EHZ30135.1| ribosome recycling factor [Streptococcus pneumoniae GA17457]
gi|379565818|gb|EHZ30809.1| ribosome recycling factor [Streptococcus pneumoniae GA17719]
gi|379566991|gb|EHZ31978.1| ribosome recycling factor [Streptococcus pneumoniae GA18068]
gi|379572534|gb|EHZ37491.1| ribosome recycling factor [Streptococcus pneumoniae GA19923]
gi|379574250|gb|EHZ39194.1| ribosome recycling factor [Streptococcus pneumoniae GA40028]
gi|379576599|gb|EHZ41523.1| ribosome recycling factor [Streptococcus pneumoniae GA40183]
gi|379579927|gb|EHZ44823.1| ribosome recycling factor [Streptococcus pneumoniae GA40410]
gi|379580841|gb|EHZ45730.1| ribosome recycling factor [Streptococcus pneumoniae GA40563]
gi|379594443|gb|EHZ59253.1| ribosome recycling factor [Streptococcus pneumoniae GA47179]
gi|379595123|gb|EHZ59932.1| ribosome recycling factor [Streptococcus pneumoniae GA47210]
gi|379601120|gb|EHZ65896.1| ribosome recycling factor [Streptococcus pneumoniae GA47522]
gi|379602032|gb|EHZ66804.1| ribosome recycling factor [Streptococcus pneumoniae GA47628]
gi|379606344|gb|EHZ71092.1| ribosome recycling factor [Streptococcus pneumoniae GA47794]
gi|379606435|gb|EHZ71182.1| ribosome recycling factor [Streptococcus pneumoniae GA47760]
gi|379607792|gb|EHZ72538.1| ribosome recycling factor [Streptococcus pneumoniae GA49194]
gi|379614525|gb|EHZ79235.1| ribosome recycling factor [Streptococcus pneumoniae 7879-04]
gi|379615943|gb|EHZ80644.1| ribosome recycling factor [Streptococcus pneumoniae 8190-05]
gi|379618843|gb|EHZ83518.1| ribosome recycling factor [Streptococcus pneumoniae 5652-06]
gi|379620295|gb|EHZ84954.1| ribosome recycling factor [Streptococcus pneumoniae 7533-05]
gi|379622984|gb|EHZ87618.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP02]
gi|379623639|gb|EHZ88272.1| ribosome recycling factor [Streptococcus pneumoniae 4075-00]
gi|379626859|gb|EHZ91475.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP03]
gi|379630706|gb|EHZ95287.1| ribosome recycling factor [Streptococcus pneumoniae EU-NP05]
gi|379633759|gb|EHZ98328.1| ribosome recycling factor [Streptococcus pneumoniae NP141]
gi|379636811|gb|EIA01369.1| ribosome recycling factor [Streptococcus pneumoniae GA05578]
gi|379640622|gb|EIA05161.1| ribosome recycling factor [Streptococcus pneumoniae GA02506]
gi|379641713|gb|EIA06248.1| ribosome recycling factor [Streptococcus pneumoniae GA08825]
gi|381309723|gb|EIC50556.1| ribosome recycling factor [Streptococcus pneumoniae SV36]
gi|381317153|gb|EIC57883.1| ribosome recycling factor [Streptococcus pneumoniae 459-5]
gi|381317637|gb|EIC58362.1| ribosome recycling factor [Streptococcus pneumoniae SV35]
gi|395573771|gb|EJG34358.1| ribosome recycling factor [Streptococcus pneumoniae 2070035]
gi|395580557|gb|EJG41038.1| ribosome recycling factor [Streptococcus pneumoniae 2070108]
gi|395581307|gb|EJG41779.1| ribosome recycling factor [Streptococcus pneumoniae 2070109]
gi|395584950|gb|EJG45342.1| ribosome recycling factor [Streptococcus pneumoniae 2070335]
gi|395596206|gb|EJG56428.1| ribosome recycling factor [Streptococcus pneumoniae 2080076]
gi|395602056|gb|EJG62200.1| ribosome recycling factor [Streptococcus pneumoniae 2071247]
gi|395602825|gb|EJG62967.1| ribosome recycling factor [Streptococcus pneumoniae 2061617]
gi|395605007|gb|EJG65139.1| ribosome recycling factor [Streptococcus pneumoniae 2071004]
gi|395609266|gb|EJG69353.1| ribosome recycling factor [Streptococcus pneumoniae 2081685]
gi|395609593|gb|EJG69679.1| ribosome recycling factor [Streptococcus pneumoniae 2081074]
gi|395614538|gb|EJG74557.1| ribosome recycling factor [Streptococcus pneumoniae 2082239]
gi|395868389|gb|EJG79507.1| ribosome recycling factor [Streptococcus pneumoniae SPAR48]
gi|395875574|gb|EJG86655.1| ribosome recycling factor [Streptococcus pneumoniae GA52612]
gi|395881097|gb|EJG92146.1| ribosome recycling factor [Streptococcus pneumoniae GA04216]
gi|395882091|gb|EJG93138.1| ribosome recycling factor [Streptococcus pneumoniae GA04672]
gi|395902367|gb|EJH13300.1| ribosome recycling factor [Streptococcus pneumoniae GA60080]
gi|395905561|gb|EJH16466.1| ribosome recycling factor [Streptococcus pneumoniae GA62331]
gi|395908315|gb|EJH19197.1| ribosome recycling factor [Streptococcus pneumoniae GA60132]
gi|395914611|gb|EJH25455.1| ribosome recycling factor [Streptococcus pneumoniae GA47562]
gi|429319305|emb|CCP32557.1| ribosome recycling factor [Streptococcus pneumoniae SPN034183]
gi|429321120|emb|CCP34531.1| ribosome recycling factor [Streptococcus pneumoniae SPN994039]
gi|429322940|emb|CCP30572.1| ribosome recycling factor [Streptococcus pneumoniae SPN994038]
Length = 185
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD + VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|387626302|ref|YP_006062475.1| ribosome recycling factor [Streptococcus pneumoniae INV104]
gi|410476388|ref|YP_006743147.1| ribosome recycling factor [Streptococcus pneumoniae gamPNI0373]
gi|417693864|ref|ZP_12343053.1| ribosome recycling factor [Streptococcus pneumoniae GA47901]
gi|444382190|ref|ZP_21180394.1| ribosome recycling factor [Streptococcus pneumoniae PCS8106]
gi|444384782|ref|ZP_21182873.1| ribosome recycling factor [Streptococcus pneumoniae PCS8203]
gi|444388444|ref|ZP_21186429.1| ribosome recycling factor [Streptococcus pneumoniae PCS125219]
gi|444389923|ref|ZP_21187838.1| ribosome recycling factor [Streptococcus pneumoniae PCS70012]
gi|444392740|ref|ZP_21190437.1| ribosome recycling factor [Streptococcus pneumoniae PCS81218]
gi|444395843|ref|ZP_21193382.1| ribosome recycling factor [Streptococcus pneumoniae PNI0002]
gi|444397402|ref|ZP_21194885.1| ribosome recycling factor [Streptococcus pneumoniae PNI0006]
gi|444401126|ref|ZP_21198431.1| ribosome recycling factor [Streptococcus pneumoniae PNI0007]
gi|444401944|ref|ZP_21199123.1| ribosome recycling factor [Streptococcus pneumoniae PNI0008]
gi|444405084|ref|ZP_21202009.1| ribosome recycling factor [Streptococcus pneumoniae PNI0009]
gi|444408619|ref|ZP_21205252.1| ribosome recycling factor [Streptococcus pneumoniae PNI0010]
gi|444409477|ref|ZP_21206069.1| ribosome recycling factor [Streptococcus pneumoniae PNI0076]
gi|444411701|ref|ZP_21208029.1| ribosome recycling factor [Streptococcus pneumoniae PNI0153]
gi|444414434|ref|ZP_21210703.1| ribosome recycling factor [Streptococcus pneumoniae PNI0199]
gi|444418556|ref|ZP_21214530.1| ribosome recycling factor [Streptococcus pneumoniae PNI0360]
gi|444421168|ref|ZP_21216920.1| ribosome recycling factor [Streptococcus pneumoniae PNI0427]
gi|444422386|ref|ZP_21218043.1| ribosome recycling factor [Streptococcus pneumoniae PNI0446]
gi|301794085|emb|CBW36491.1| ribosome recycling factor [Streptococcus pneumoniae INV104]
gi|332204947|gb|EGJ19012.1| ribosome recycling factor [Streptococcus pneumoniae GA47901]
gi|406369333|gb|AFS43023.1| ribosome recycling factor [Streptococcus pneumoniae gamPNI0373]
gi|444249501|gb|ELU55991.1| ribosome recycling factor [Streptococcus pneumoniae PCS125219]
gi|444251542|gb|ELU58011.1| ribosome recycling factor [Streptococcus pneumoniae PCS8203]
gi|444253150|gb|ELU59609.1| ribosome recycling factor [Streptococcus pneumoniae PCS8106]
gi|444255844|gb|ELU62184.1| ribosome recycling factor [Streptococcus pneumoniae PNI0002]
gi|444256386|gb|ELU62724.1| ribosome recycling factor [Streptococcus pneumoniae PCS70012]
gi|444260059|gb|ELU66367.1| ribosome recycling factor [Streptococcus pneumoniae PNI0006]
gi|444262897|gb|ELU69146.1| ribosome recycling factor [Streptococcus pneumoniae PCS81218]
gi|444264033|gb|ELU70149.1| ribosome recycling factor [Streptococcus pneumoniae PNI0007]
gi|444267415|gb|ELU73320.1| ribosome recycling factor [Streptococcus pneumoniae PNI0008]
gi|444269446|gb|ELU75253.1| ribosome recycling factor [Streptococcus pneumoniae PNI0010]
gi|444275598|gb|ELU81220.1| ribosome recycling factor [Streptococcus pneumoniae PNI0153]
gi|444275657|gb|ELU81277.1| ribosome recycling factor [Streptococcus pneumoniae PNI0009]
gi|444279515|gb|ELU84911.1| ribosome recycling factor [Streptococcus pneumoniae PNI0076]
gi|444281152|gb|ELU86482.1| ribosome recycling factor [Streptococcus pneumoniae PNI0360]
gi|444282099|gb|ELU87382.1| ribosome recycling factor [Streptococcus pneumoniae PNI0199]
gi|444283069|gb|ELU88281.1| ribosome recycling factor [Streptococcus pneumoniae PNI0427]
gi|444288316|gb|ELU93213.1| ribosome recycling factor [Streptococcus pneumoniae PNI0446]
Length = 185
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + +PALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVVPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|225858740|ref|YP_002740250.1| ribosome recycling factor [Streptococcus pneumoniae 70585]
gi|289167793|ref|YP_003446062.1| ribosome recycling factor [Streptococcus mitis B6]
gi|307704917|ref|ZP_07641808.1| ribosome recycling factor [Streptococcus mitis SK597]
gi|307706446|ref|ZP_07643255.1| ribosome recycling factor [Streptococcus mitis SK321]
gi|307708583|ref|ZP_07645047.1| ribosome recycling factor [Streptococcus mitis NCTC 12261]
gi|307709131|ref|ZP_07645590.1| ribosome recycling factor [Streptococcus mitis SK564]
gi|322376444|ref|ZP_08050937.1| ribosome recycling factor [Streptococcus sp. M334]
gi|342163966|ref|YP_004768605.1| ribosome recycling factor [Streptococcus pseudopneumoniae IS7493]
gi|383937989|ref|ZP_09991218.1| ribosome recycling factor [Streptococcus pseudopneumoniae SK674]
gi|385262543|ref|ZP_10040647.1| ribosome recycling factor [Streptococcus sp. SK643]
gi|387759197|ref|YP_006066175.1| ribosome recycling factor [Streptococcus pneumoniae INV200]
gi|417848222|ref|ZP_12494171.1| ribosome recycling factor [Streptococcus mitis SK1073]
gi|417849165|ref|ZP_12495090.1| ribosome recycling factor [Streptococcus mitis SK1080]
gi|417923273|ref|ZP_12566742.1| ribosome recycling factor [Streptococcus mitis SK569]
gi|418166569|ref|ZP_12803225.1| ribosome recycling factor [Streptococcus pneumoniae GA17971]
gi|418193572|ref|ZP_12830064.1| ribosome recycling factor [Streptococcus pneumoniae GA47439]
gi|418967445|ref|ZP_13519108.1| ribosome recycling factor [Streptococcus mitis SK616]
gi|418973817|ref|ZP_13521778.1| ribosome recycling factor [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|418977663|ref|ZP_13525477.1| ribosome recycling factor [Streptococcus mitis SK575]
gi|419442429|ref|ZP_13982460.1| ribosome recycling factor [Streptococcus pneumoniae GA13224]
gi|419514497|ref|ZP_14054124.1| ribosome recycling factor [Streptococcus pneumoniae England14-9]
gi|421227105|ref|ZP_15683814.1| ribosome recycling factor [Streptococcus pneumoniae 2072047]
gi|254809532|sp|C1C6S4.1|RRF_STRP7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|225721445|gb|ACO17299.1| ribosome recycling factor [Streptococcus pneumoniae 70585]
gi|288907360|emb|CBJ22197.1| ribosome recycling factor [Streptococcus mitis B6]
gi|301801786|emb|CBW34497.1| ribosome recycling factor [Streptococcus pneumoniae INV200]
gi|307615332|gb|EFN94541.1| ribosome recycling factor [Streptococcus mitis NCTC 12261]
gi|307618156|gb|EFN97314.1| ribosome recycling factor [Streptococcus mitis SK321]
gi|307620077|gb|EFN99194.1| ribosome recycling factor [Streptococcus mitis SK564]
gi|307621531|gb|EFO00577.1| ribosome recycling factor [Streptococcus mitis SK597]
gi|321282251|gb|EFX59258.1| ribosome recycling factor [Streptococcus sp. M334]
gi|339454969|gb|EGP67582.1| ribosome recycling factor [Streptococcus mitis SK1073]
gi|339456792|gb|EGP69374.1| ribosome recycling factor [Streptococcus mitis SK1080]
gi|341933848|gb|AEL10745.1| ribosome recycling factor [Streptococcus pseudopneumoniae IS7493]
gi|342837077|gb|EGU71276.1| ribosome recycling factor [Streptococcus mitis SK569]
gi|353830165|gb|EHE10295.1| ribosome recycling factor [Streptococcus pneumoniae GA17971]
gi|353859552|gb|EHE39502.1| ribosome recycling factor [Streptococcus pneumoniae GA47439]
gi|379554396|gb|EHZ19476.1| ribosome recycling factor [Streptococcus pneumoniae GA13224]
gi|379637593|gb|EIA02146.1| ribosome recycling factor [Streptococcus pneumoniae England14-9]
gi|383344058|gb|EID22228.1| ribosome recycling factor [Streptococcus mitis SK616]
gi|383346776|gb|EID24794.1| ribosome recycling factor [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383349631|gb|EID27560.1| ribosome recycling factor [Streptococcus mitis SK575]
gi|383715117|gb|EID71094.1| ribosome recycling factor [Streptococcus pseudopneumoniae SK674]
gi|385190444|gb|EIF37891.1| ribosome recycling factor [Streptococcus sp. SK643]
gi|395596344|gb|EJG56563.1| ribosome recycling factor [Streptococcus pneumoniae 2072047]
Length = 185
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD + VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|168491033|ref|ZP_02715176.1| ribosome recycling factor [Streptococcus pneumoniae CDC0288-04]
gi|419479770|ref|ZP_14019577.1| ribosome recycling factor [Streptococcus pneumoniae GA19101]
gi|419495259|ref|ZP_14034977.1| ribosome recycling factor [Streptococcus pneumoniae GA47461]
gi|419499460|ref|ZP_14039159.1| ribosome recycling factor [Streptococcus pneumoniae GA47597]
gi|421303161|ref|ZP_15753825.1| ribosome recycling factor [Streptococcus pneumoniae GA17484]
gi|183574722|gb|EDT95250.1| ribosome recycling factor [Streptococcus pneumoniae CDC0288-04]
gi|379570936|gb|EHZ35895.1| ribosome recycling factor [Streptococcus pneumoniae GA19101]
gi|379595341|gb|EHZ60149.1| ribosome recycling factor [Streptococcus pneumoniae GA47461]
gi|379602514|gb|EHZ67285.1| ribosome recycling factor [Streptococcus pneumoniae GA47597]
gi|395901783|gb|EJH12719.1| ribosome recycling factor [Streptococcus pneumoniae GA17484]
gi|429317760|emb|CCP37560.1| ribosome recycling factor [Streptococcus pneumoniae SPN034156]
Length = 185
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD + VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|163849097|ref|YP_001637141.1| ribosome recycling factor [Chloroflexus aurantiacus J-10-fl]
gi|222527070|ref|YP_002571541.1| ribosome recycling factor [Chloroflexus sp. Y-400-fl]
gi|189044049|sp|A9WAG2.1|RRF_CHLAA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809502|sp|B9LEM3.1|RRF_CHLSY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|163670386|gb|ABY36752.1| ribosome recycling factor [Chloroflexus aurantiacus J-10-fl]
gi|222450949|gb|ACM55215.1| ribosome recycling factor [Chloroflexus sp. Y-400-fl]
Length = 185
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
++ A AL L +RTGRAS +++H+ VE G+ MPLN LA +SV + + + I PYD
Sbjct: 13 LKKATEALRHHLASIRTGRASSALVEHLHVEAYGMTMPLNQLANISVPEPRLIVIQPYDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N +K +E AI S LGLNP DG+ + +P LT+E + + K+V E+VK S+R R
Sbjct: 73 NMIKAIEKAIQQSDLGLNPSNDGRVIRLPVPPLTEERRRELVKMVRHRVEEVKISVRNQR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK A + +D++ R ++ I +LT + + D I KE E+
Sbjct: 133 RDAIDDLKKLEAEKLISEDELHRGQERIQQLTDRCTRELDQIGAEKEAEV 182
>gi|405761070|ref|YP_006701666.1| ribosome recycling factor [Streptococcus pneumoniae SPNA45]
gi|404277959|emb|CCM08530.1| ribosome recycling factor [Streptococcus pneumoniae SPNA45]
Length = 185
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD + VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|358464713|ref|ZP_09174673.1| ribosome recycling factor [Streptococcus sp. oral taxon 058 str.
F0407]
gi|357066584|gb|EHI76729.1| ribosome recycling factor [Streptococcus sp. oral taxon 058 str.
F0407]
Length = 185
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD + VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|170723240|ref|YP_001750928.1| ribosome recycling factor [Pseudomonas putida W619]
gi|398846482|ref|ZP_10603452.1| ribosome recycling factor [Pseudomonas sp. GM84]
gi|229564262|sp|B1JBQ7.1|RRF_PSEPW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|169761243|gb|ACA74559.1| ribosome recycling factor [Pseudomonas putida W619]
gi|398252514|gb|EJN37701.1| ribosome recycling factor [Pseudomonas sp. GM84]
Length = 185
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I AL R L +RTGRA P +LD + V G +MPLN +A VSV D++TL I +D
Sbjct: 13 MGKSIEALGRNLASIRTGRAHPSILDSVKVPAWGSEMPLNQVAAVSVEDARTLKIVAHDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N +E AI++S LGLNP G + +PALT+E + K + +ED K ++R R
Sbjct: 73 NLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQASAVAEDAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ AL +KK + +D+ +R EI +LT K+V D KAKEK++
Sbjct: 133 RDALADLKKLTKDKEISEDEERRAADEIQKLTDKFVAEIDAAFKAKEKDL 182
>gi|110679817|ref|YP_682824.1| ribosome recycling factor [Roseobacter denitrificans OCh 114]
gi|123065540|sp|Q166F5.1|RRF_ROSDO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|109455933|gb|ABG32138.1| ribosome recycling factor [Roseobacter denitrificans OCh 114]
Length = 187
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 100/169 (59%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI +L E LRTGRAS ML+ ++V+ G + P+N + V+V + + ++IN +D
Sbjct: 16 MDGAISSLKTEFASLRTGRASASMLEPVMVDAYGQRTPINQVGTVNVPEPRMVTINVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI S LG+NP+++G ++ IP L +E + + KV + +E + SIR R
Sbjct: 76 GLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELSKVAGQYAEHARVSIRNIR 135
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA L +D K E E+ E+T +Y+K DD K+ EI
Sbjct: 136 RDGMDQIKKAKADGLSEDDQKLWEGEVQEITDRYIKGIDDQLATKQAEI 184
>gi|18310679|ref|NP_562613.1| ribosome recycling factor [Clostridium perfringens str. 13]
gi|110800605|ref|YP_696384.1| ribosome recycling factor [Clostridium perfringens ATCC 13124]
gi|110802993|ref|YP_698984.1| ribosome recycling factor [Clostridium perfringens SM101]
gi|168208114|ref|ZP_02634119.1| ribosome recycling factor [Clostridium perfringens E str. JGS1987]
gi|168211415|ref|ZP_02637040.1| ribosome recycling factor [Clostridium perfringens B str. ATCC
3626]
gi|168214470|ref|ZP_02640095.1| ribosome recycling factor [Clostridium perfringens CPE str. F4969]
gi|168216984|ref|ZP_02642609.1| ribosome recycling factor [Clostridium perfringens NCTC 8239]
gi|169342698|ref|ZP_02863739.1| ribosome recycling factor [Clostridium perfringens C str. JGS1495]
gi|182627138|ref|ZP_02954853.1| ribosome recycling factor [Clostridium perfringens D str. JGS1721]
gi|422346367|ref|ZP_16427281.1| ribosome-recycling factor [Clostridium perfringens WAL-14572]
gi|422874618|ref|ZP_16921103.1| ribosome recycling factor [Clostridium perfringens F262]
gi|20141648|sp|Q46293.2|RRF_CLOPE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|122956643|sp|Q0SSC3.1|RRF_CLOPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|123344670|sp|Q0TPQ6.1|RRF_CLOP1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|18145360|dbj|BAB81403.1| ribosome recycling factor [Clostridium perfringens str. 13]
gi|110675252|gb|ABG84239.1| ribosome recycling factor [Clostridium perfringens ATCC 13124]
gi|110683494|gb|ABG86864.1| ribosome recycling factor [Clostridium perfringens SM101]
gi|169299204|gb|EDS81274.1| ribosome recycling factor [Clostridium perfringens C str. JGS1495]
gi|170660605|gb|EDT13288.1| ribosome recycling factor [Clostridium perfringens E str. JGS1987]
gi|170710572|gb|EDT22754.1| ribosome recycling factor [Clostridium perfringens B str. ATCC
3626]
gi|170714030|gb|EDT26212.1| ribosome recycling factor [Clostridium perfringens CPE str. F4969]
gi|177907475|gb|EDT70141.1| ribosome recycling factor [Clostridium perfringens D str. JGS1721]
gi|182380949|gb|EDT78428.1| ribosome recycling factor [Clostridium perfringens NCTC 8239]
gi|373225912|gb|EHP48239.1| ribosome-recycling factor [Clostridium perfringens WAL-14572]
gi|380304259|gb|EIA16548.1| ribosome recycling factor [Clostridium perfringens F262]
Length = 185
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I +L+ EL ++ GRA+P MLD I VE G PLN +A VS + + L I P++
Sbjct: 13 MNKTINSLNSELATMKAGRANPTMLDRIQVEYYGSMCPLNQVANVSSPEPRLLVITPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LKE+E AI+ S LG+NP DG + +P LT+E + + K V K E K +IR R
Sbjct: 73 PMLKEIEKAILKSDLGINPNNDGTIIRLLVPELTEETRKNLVKNVKKVGEQAKVAIRSIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K K ++ +D+MK+ E +I ++T K+VK D I AKEKEI
Sbjct: 133 KDANDKVKNFKKEGTITEDEMKKGEDDIQKVTDKFVKEIDTIVAAKEKEI 182
>gi|385261090|ref|ZP_10039222.1| ribosome recycling factor [Streptococcus sp. SK140]
gi|385189489|gb|EIF36953.1| ribosome recycling factor [Streptococcus sp. SK140]
Length = 185
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I + T VK D++ KEKEI E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKATDDAVKHIDEMTANKEKEILE 184
>gi|160934097|ref|ZP_02081484.1| hypothetical protein CLOLEP_02960 [Clostridium leptum DSM 753]
gi|156866770|gb|EDO60142.1| ribosome recycling factor [Clostridium leptum DSM 753]
Length = 184
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I AL+ E +R GRA+P +LD I+V+ G +N LA +SV +++TL+I+P+D
Sbjct: 12 MNKTINALTSEFAGIRAGRANPAVLDKIMVDYYGSPTAINQLAAISVTEARTLTISPWDQ 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI SS LG+NP+ DG+ + P LT++ + + K + K E+ K +IR R
Sbjct: 72 SVVHAVEKAIQSSDLGINPQTDGKVIRLIFPPLTEDRRRDIVKDIKKMEEEAKVAIRSIR 131
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ ++D +K K + +D +K EK++ T K++K + I + KEKEI E
Sbjct: 132 RDSMDKLKALKKNGEITEDDLKDAEKKMQNQTDKFIKEIESISQVKEKEIME 183
>gi|429201537|ref|ZP_19192995.1| ribosome recycling factor [Streptomyces ipomoeae 91-03]
gi|428662929|gb|EKX62327.1| ribosome recycling factor [Streptomyces ipomoeae 91-03]
Length = 185
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 93/172 (54%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKDDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT+E + KV ED K SIR R
Sbjct: 73 TALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKTKGEDAKVSIRSVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKDAIDKLVKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|408827448|ref|ZP_11212338.1| ribosome recycling factor [Streptomyces somaliensis DSM 40738]
Length = 185
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV ED K SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVAKSKGEDAKISIRAVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKETLDKLVKDG-EVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|403745584|ref|ZP_10954379.1| ribosome recycling factor [Alicyclobacillus hesperidum URH17-3-68]
gi|403121302|gb|EJY55616.1| ribosome recycling factor [Alicyclobacillus hesperidum URH17-3-68]
Length = 185
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ L RE +R GRA+P MLD ++V+ G +MP+N +A V+ + + L I+P++
Sbjct: 13 MDKAVQNLRREFASVRAGRATPAMLDKVLVDYYGSQMPVNQVASVTTPEPRLLVISPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L E+E AI S LGLNP DG + +PALT+E Q + K V K +E+ + +IR R
Sbjct: 73 SMLSEIEKAIQKSDLGLNPSNDGTVIRLTVPALTEERRQELVKQVRKLAEEARVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D+++RL +I ++T K + D + + KEK++ +
Sbjct: 133 RDGNDELKKLEKNGDVSEDEVRRLMDKIQQITDKCIAQVDSLLEDKEKDVTQ 184
>gi|418195974|ref|ZP_12832453.1| ribosome recycling factor [Streptococcus pneumoniae GA47688]
gi|353861425|gb|EHE41362.1| ribosome recycling factor [Streptococcus pneumoniae GA47688]
Length = 173
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD + VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 7 SLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 66
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 67 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 126
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 127 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 172
>gi|428771727|ref|YP_007163517.1| ribosome recycling factor [Cyanobacterium aponinum PCC 10605]
gi|428686006|gb|AFZ55473.1| ribosome recycling factor [Cyanobacterium aponinum PCC 10605]
Length = 183
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 97/161 (60%), Gaps = 2/161 (1%)
Query: 10 RELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECA 69
++L +RTGRA+ +LD I+V+ G + PL LA +S D+ TL I P+D ++ LE A
Sbjct: 20 QDLNTIRTGRANASLLDKIMVDYYGAETPLKSLANISTPDATTLMIQPFDKGSISLLEKA 79
Query: 70 IVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 129
I S +GL P DGQ + IP LT E Q K+ +K +E+ K +IR R+ A+D ++K
Sbjct: 80 ISMSDIGLTPNNDGQIIRLNIPPLTAERRQEFVKIASKYAEEGKVAIRNIRRDAIDKVRK 139
Query: 130 A--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
S + +D+ + L+ EI ++T KY DDI K KEKE+
Sbjct: 140 QEKASEISEDESRDLQDEIQKVTDKYTAKIDDILKVKEKEL 180
>gi|148992922|ref|ZP_01822541.1| ribosome recycling factor [Streptococcus pneumoniae SP9-BS68]
gi|168490239|ref|ZP_02714438.1| ribosome recycling factor [Streptococcus pneumoniae SP195]
gi|417678898|ref|ZP_12328295.1| ribosome recycling factor [Streptococcus pneumoniae GA17570]
gi|418125552|ref|ZP_12762463.1| ribosome recycling factor [Streptococcus pneumoniae GA44511]
gi|418191490|ref|ZP_12827994.1| ribosome recycling factor [Streptococcus pneumoniae GA47388]
gi|418214116|ref|ZP_12840851.1| ribosome recycling factor [Streptococcus pneumoniae GA54644]
gi|418234142|ref|ZP_12860721.1| ribosome recycling factor [Streptococcus pneumoniae GA08780]
gi|419484191|ref|ZP_14023967.1| ribosome recycling factor [Streptococcus pneumoniae GA43257]
gi|419508014|ref|ZP_14047667.1| ribosome recycling factor [Streptococcus pneumoniae GA49542]
gi|421220094|ref|ZP_15676944.1| ribosome recycling factor [Streptococcus pneumoniae 2070425]
gi|421222421|ref|ZP_15679212.1| ribosome recycling factor [Streptococcus pneumoniae 2070531]
gi|421278719|ref|ZP_15729527.1| ribosome recycling factor [Streptococcus pneumoniae GA17301]
gi|421294233|ref|ZP_15744956.1| ribosome recycling factor [Streptococcus pneumoniae GA56113]
gi|421300794|ref|ZP_15751465.1| ribosome recycling factor [Streptococcus pneumoniae GA19998]
gi|421300810|ref|ZP_15751480.1| ribosome recycling factor [Streptococcus pneumoniae GA19998]
gi|147928374|gb|EDK79390.1| ribosome recycling factor [Streptococcus pneumoniae SP9-BS68]
gi|183571379|gb|EDT91907.1| ribosome recycling factor [Streptococcus pneumoniae SP195]
gi|332073277|gb|EGI83756.1| ribosome recycling factor [Streptococcus pneumoniae GA17570]
gi|353797806|gb|EHD78137.1| ribosome recycling factor [Streptococcus pneumoniae GA44511]
gi|353857391|gb|EHE37354.1| ribosome recycling factor [Streptococcus pneumoniae GA47388]
gi|353871399|gb|EHE51270.1| ribosome recycling factor [Streptococcus pneumoniae GA54644]
gi|353888387|gb|EHE68161.1| ribosome recycling factor [Streptococcus pneumoniae GA08780]
gi|379583702|gb|EHZ48579.1| ribosome recycling factor [Streptococcus pneumoniae GA43257]
gi|379611732|gb|EHZ76454.1| ribosome recycling factor [Streptococcus pneumoniae GA49542]
gi|395588371|gb|EJG48701.1| ribosome recycling factor [Streptococcus pneumoniae 2070425]
gi|395588589|gb|EJG48917.1| ribosome recycling factor [Streptococcus pneumoniae 2070531]
gi|395880152|gb|EJG91205.1| ribosome recycling factor [Streptococcus pneumoniae GA17301]
gi|395894523|gb|EJH05503.1| ribosome recycling factor [Streptococcus pneumoniae GA56113]
gi|395898370|gb|EJH09314.1| ribosome recycling factor [Streptococcus pneumoniae GA19998]
gi|395900218|gb|EJH11157.1| ribosome recycling factor [Streptococcus pneumoniae GA19998]
Length = 185
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD + VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKREKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|89889410|ref|ZP_01200921.1| ribosome recycling factor [Flavobacteria bacterium BBFL7]
gi|89517683|gb|EAS20339.1| ribosome recycling factor [Flavobacteria bacterium BBFL7]
Length = 184
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 100/168 (59%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M++AIV L ++L +R G+ASP ML + V+ G + PL +A V+ D++T+++ P++
Sbjct: 16 MDSAIVHLEKQLLNIRAGKASPAMLGSVFVDYYGSQTPLGQVANVAAPDARTITVTPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ E+E I+ + LGLNP +G+ +I +PALT+E + K E+ K +R R
Sbjct: 76 GMITEIEKGIMYANLGLNPMNNGESVIINVPALTEERRIDLAKQSKSEGEEAKIGVRNDR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A++ +KK G L +D +K E+E+ ELT Y+ D I KE EI
Sbjct: 136 KTAMNDLKKLG--LSEDLLKSSEEEVQELTNSYIAKIDKIVAVKEAEI 181
>gi|167646764|ref|YP_001684427.1| ribosome recycling factor [Caulobacter sp. K31]
gi|189044048|sp|B0SZ18.1|RRF_CAUSK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|167349194|gb|ABZ71929.1| ribosome recycling factor [Caulobacter sp. K31]
Length = 188
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+++L + LRTGRAS G+LD I+V G + LN +A +SV + + +++N +D
Sbjct: 16 MDKAVLSLKEDFAGLRTGRASSGLLDQIMVNAYGSMVQLNTVASISVPEPRQINVNIWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI +S LGLNP V+G L IP LT+E + + K+ K +E K ++R R
Sbjct: 76 GVVSAVEKAIRNSDLGLNPVVEGNNLRIPIPPLTEERRKDLVKIAGKYAEAQKVAVRNIR 135
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KKA S + +D++K++E E+ ++T +K D+ K KE+EI
Sbjct: 136 RDANDDLKKAEKASVISEDELKKMETEVQKITDGAIKQVDEALKTKEQEI 185
>gi|414173745|ref|ZP_11428372.1| ribosome-recycling factor [Afipia broomeae ATCC 49717]
gi|410890379|gb|EKS38178.1| ribosome-recycling factor [Afipia broomeae ATCC 49717]
Length = 187
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI +L EL LRTGRA+ M++ + VE G MPLN +A VSV + + LS+ +D
Sbjct: 15 MEGAINSLKHELGGLRTGRAAISMVEPVQVEAYGSHMPLNQVATVSVPEPRLLSVQVWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AIV+S LGL+P +GQ + IP L +E + + KV K +E + ++R R
Sbjct: 75 SMVKAVETAIVNSNLGLSPATEGQVIRLRIPELNEERRKELVKVAHKYTEAARVAVRHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LDM+KK + +D KRL E+ ++T + D AKEKEI
Sbjct: 135 RDGLDMLKKLEKDHQISEDDEKRLSNEVQKVTDAAIADVDKALAAKEKEI 184
>gi|260583805|ref|ZP_05851553.1| ribosome recycling factor [Granulicatella elegans ATCC 700633]
gi|260158431|gb|EEW93499.1| ribosome recycling factor [Granulicatella elegans ATCC 700633]
Length = 186
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
AL REL +R GRA+ +LD + VE GV P+N LA V+V +++ L I PYD ++L+++
Sbjct: 20 ALQRELGGIRAGRANASLLDRLQVEYYGVPTPVNQLASVTVPEARMLLITPYDKSSLQDI 79
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI+ S +G+ P DG + IP LT+E + + K V K +E K S+R R+ A++
Sbjct: 80 ERAILMSDIGITPTNDGSVVRLVIPQLTEERRKELAKQVGKEAEGAKVSVRNIRRDAIEH 139
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KKA + +D ++ EK+I +LT VK+ D + + KEKE+ E
Sbjct: 140 LKKAEKNKEITEDDLRGYEKDIQKLTDDSVKNIDHLAQVKEKELLE 185
>gi|344925112|ref|ZP_08778573.1| ribosome recycling factor frr [Candidatus Odyssella
thessalonicensis L13]
gi|297717876|gb|ADI50081.1| ribosome recycling factor [Candidatus Odyssella thessalonicensis
L13]
Length = 185
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L+RE + LRTGRAS +LD I V+ G P+N + ++V +++ L++ +D
Sbjct: 13 MDGAIEVLNREFSGLRTGRASVNLLDAIKVDAYGSPTPINQVGNINVPEARMLTVQVWDN 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AI + LGLNP VDGQ + +P L +E Q + KV AK +E+ K S+R R
Sbjct: 73 SMIKAVEKAIRDAGLGLNPAVDGQLIRIPLPPLNEERRQELTKVAAKYAEEAKISVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ ++ +KK+ + +D+ +RL E+ ++T ++K D+I +K+K+I
Sbjct: 133 RDIMESLKKSEKDGEISEDEHRRLSDEVQKVTDAHIKKIDEILASKQKDI 182
>gi|453383393|dbj|GAC82294.1| ribosome-recycling factor [Gordonia paraffinivorans NBRC 108238]
Length = 185
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ ++T +RTGRA+P M I +E G P+ +A ++ + + + I PY+
Sbjct: 13 MEKAVSVAREDMTSIRTGRANPAMFKGINIEYYGAVTPVTQVASITTPEPRLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TL+++E AI +S LG+NP DG + AIP LT+E + + K ED K +IR R
Sbjct: 73 STLRDIETAIRNSDLGVNPTNDGNIIRVAIPQLTEERRRELAKQARAKGEDAKVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+KA+D +K+ +D++ R EKE+D+ T YV D++ K KE E+
Sbjct: 133 RKAVDELKRIQKDGEAGEDEVTRAEKELDKTTANYVAQVDELVKHKENEL 182
>gi|257061312|ref|YP_003139200.1| ribosome recycling factor [Cyanothece sp. PCC 8802]
gi|256591478|gb|ACV02365.1| ribosome recycling factor [Cyanothece sp. PCC 8802]
Length = 181
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ A R +RTGRA+ +LD +IVE G++ PLN LA ++ D+ T++I PYD
Sbjct: 9 MQKSVEATQRSFNTIRTGRANASLLDRVIVEYYGMETPLNQLANITTPDATTINILPYDK 68
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ +E AI S LGL P DG+ + IP LT+E + + K+ K +E+ K +IR R
Sbjct: 69 GSMGAIEKAINLSDLGLTPNNDGKVIRLNIPPLTEERRKELVKLAGKLAEEGKVAIRNIR 128
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D ++K + + +D+ + L+ EI ++T K+ D++ K KEK+I
Sbjct: 129 RDGIDTVRKQEKNNDISEDESRNLQDEIQKITDKFTTKIDELLKVKEKDI 178
>gi|365904178|ref|ZP_09441937.1| ribosome recycling factor [Lactobacillus versmoldensis KCTC 3814]
Length = 186
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I L+REL +R G+A+ +L ++ VE G PLN +A +++ +++ L + PYD
Sbjct: 14 MKKTIEVLNRELANIRAGKANASILSNVQVEYYGTMAPLNQVASINIPEARVLLVTPYDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI S+ LGLNP DG + IP LT E Q + K V K +ED + ++R R
Sbjct: 74 SALDNIEHAINSADLGLNPANDGDVIRLVIPQLTGERRQEIAKKVGKEAEDARVAVRNVR 133
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
++ +D +KK S + +D +E +I ++T + + +++ +AKEKEI EG
Sbjct: 134 REGMDSIKKQLKNSDITEDGFHDIEDQIQKVTDEAIAKVNELAEAKEKEITEG 186
>gi|156743850|ref|YP_001433979.1| ribosome recycling factor [Roseiflexus castenholzii DSM 13941]
gi|189044069|sp|A7NQW5.1|RRF_ROSCS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|156235178|gb|ABU59961.1| ribosome recycling factor [Roseiflexus castenholzii DSM 13941]
Length = 185
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL L +RTGRASP +++H+ VE G +PLN LA ++V + + L I P+D
Sbjct: 13 MKKATEALRNHLATIRTGRASPALVEHLHVEAYGATLPLNQLATITVPEPRMLVIQPFDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
NT+K + AI++S LG+ P DG+ + AIP LT+ + + K+V E+ K ++R R
Sbjct: 73 NTVKAISKAIMNSELGITPTDDGRLIRLAIPQLTEARRKELTKLVRARVEESKVALRNIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++AL+ ++ + + +D+ +R ++++ ELT +YV+ D I KE E+ E
Sbjct: 133 REALEDLRDLEHEKMISEDEHRRAQEKLQELTDRYVRELDHIGATKEAEVME 184
>gi|347750466|ref|YP_004858031.1| ribosome recycling factor [Bacillus coagulans 36D1]
gi|347582984|gb|AEO99250.1| ribosome recycling factor [Bacillus coagulans 36D1]
Length = 186
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI A REL +R GRA+ +LD I ++ G + P+N LA +SV +++ + I PYD
Sbjct: 14 MAKAIQAFQRELGSIRAGRANAALLDKITIDYYGARTPVNQLASISVPEARLMVIQPYDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+E AI+ S LGL P DG + +IP LT+E + + K++ K +E+ K +IR R
Sbjct: 74 TVLGEIERAILKSDLGLTPNNDGSVIRLSIPPLTEERRKELVKLIKKEAEEAKVAIRNVR 133
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+ + +++ ++T ++++ D + K KE+EI E
Sbjct: 134 RDANDELKKQEKNGEITEDEHRGFAEDVQKITDQHIQKIDKMTKTKEQEIME 185
>gi|404496113|ref|YP_006720219.1| ribosome recycling factor [Geobacter metallireducens GS-15]
gi|418065464|ref|ZP_12702837.1| ribosome recycling factor [Geobacter metallireducens RCH3]
gi|123572206|sp|Q39W85.1|RRF_GEOMG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|78193722|gb|ABB31489.1| ribosome recycling factor [Geobacter metallireducens GS-15]
gi|373562204|gb|EHP88421.1| ribosome recycling factor [Geobacter metallireducens RCH3]
Length = 185
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ AL RE K+RTGRA+ G+LD I VE G PL+ +A +SV + +T++I P++
Sbjct: 13 MEKSVDALRREYQKVRTGRATTGLLDDIKVEYYGNPSPLSQVATLSVPEPRTITIQPWEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+++ LG P DG+ + ++P LT+E + + K + K +ED K ++R R
Sbjct: 73 KLIPVIEKAIMNANLGFTPANDGKTIRISLPPLTEERRKEIVKTLKKMAEDTKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ +D +KK + +D +KR EKE+ ++T +V +++ KEKE+ E
Sbjct: 133 RDGIDSLKKLEKDKKISEDDLKRAEKEVQDVTNTFVAKVEEVLTHKEKEVLE 184
>gi|336113843|ref|YP_004568610.1| ribosome recycling factor [Bacillus coagulans 2-6]
gi|335367273|gb|AEH53224.1| ribosome recycling factor [Bacillus coagulans 2-6]
Length = 186
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI A REL +R GRA+ +LD I ++ G + P+N LA +SV +++ + I PYD
Sbjct: 14 MAKAIQAFQRELGSIRAGRANAALLDKITIDYYGARTPVNQLASISVPEARLMVIQPYDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+E AI+ S LGL P DG + +IP LT+E + + K++ K +E+ K +IR R
Sbjct: 74 TVLGEIEKAILKSDLGLTPNNDGSVIRLSIPPLTEERRKELVKLIKKEAEEAKVAIRNVR 133
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+ + +++ ++T ++++ D + K KE+EI E
Sbjct: 134 RDANDELKKQEKNGEITEDEHRGFAEDVQKITDQHIQKIDKMTKTKEQEIME 185
>gi|343524333|ref|ZP_08761291.1| ribosome recycling factor [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|343397982|gb|EGV10515.1| ribosome recycling factor [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
Length = 185
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D +++K++
Sbjct: 19 SLAREFGSIRAGRANASLLDRISVEYYGVETPLNQIASITIPEARVLLVTPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK D++ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKGLEKDIQKVTDDAVKHIDEMTSTKEKELLE 184
>gi|291454429|ref|ZP_06593819.1| ribosome recycling factor [Streptomyces albus J1074]
gi|359148684|ref|ZP_09181804.1| ribosome recycling factor [Streptomyces sp. S4]
gi|421741377|ref|ZP_16179580.1| ribosome recycling factor [Streptomyces sp. SM8]
gi|291357378|gb|EFE84280.1| ribosome recycling factor [Streptomyces albus J1074]
gi|406690218|gb|EKC94036.1| ribosome recycling factor [Streptomyces sp. SM8]
Length = 185
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDS 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG+ + + P LT+E + KV +ED K SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGRIIRVSFPELTEERRREFIKVAKGKAEDSKISIRAVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA +D + K G + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKETIDKLVKDG-EVGEDEGRRGEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|94496939|ref|ZP_01303513.1| ribosome recycling factor [Sphingomonas sp. SKA58]
gi|94423615|gb|EAT08642.1| ribosome recycling factor [Sphingomonas sp. SKA58]
Length = 185
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ +L +LT LRTGRA+ +LD + VE G MPLN +A VS + + LS+ +D
Sbjct: 13 MAGAVESLKGDLTGLRTGRANVQLLDPVTVEVYGAHMPLNQVATVSAPEPRMLSVQVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + + AI S+ LGLNP VDGQ L IP LT+E + + K+ +K +E + ++R R
Sbjct: 73 SNVGPCDKAIRSAGLGLNPIVDGQTLRLPIPDLTEERRKELAKLASKYAEGARVAVRNVR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +K + + +D+ KRLE E+ +LT + D + AKEKEI
Sbjct: 133 RDGMDNLKADEKKGEISEDERKRLETEVQKLTDSTIADIDSVTSAKEKEI 182
>gi|218247353|ref|YP_002372724.1| ribosome recycling factor [Cyanothece sp. PCC 8801]
gi|218167831|gb|ACK66568.1| ribosome recycling factor [Cyanothece sp. PCC 8801]
Length = 181
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ A R +RTGRA+ +LD +IVE G++ PLN LA ++ D+ T++I PYD
Sbjct: 9 MQKSVEATQRSFNTIRTGRANASLLDRVIVEYYGMETPLNQLANITTPDATTINILPYDK 68
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ +E AI S LGL P DG+ + IP LT+E + + K+ K +E+ K +IR R
Sbjct: 69 GSMGAIEKAINLSDLGLTPNNDGKVIRLNIPPLTEERRKELVKLAGKLAEEGKVAIRNIR 128
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D ++K + + +D+ + L+ EI ++T K+ D++ K KEK+I
Sbjct: 129 RDGIDTVRKQEKNNEISEDESRNLQDEIQKITDKFTTKIDELLKVKEKDI 178
>gi|224066503|ref|XP_002302112.1| predicted protein [Populus trichocarpa]
gi|222843838|gb|EEE81385.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME I + +RTGRA+P MLD I VE G + L +A +S D+ +L + PYD
Sbjct: 114 MEKTIDTMRANFNSVRTGRANPSMLDKIEVEYYGTPVSLKSIAQISTPDASSLLVQPYDK 173
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK +E AIVSS LGL P DG+ + +IP LT E + + K+VAK +E+ K ++R R
Sbjct: 174 SSLKAIEKAIVSSDLGLTPNNDGEVIRMSIPQLTSERRKELSKMVAKLAEEGKVALRNIR 233
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ AL +K L +D +K L ++ +LT +Y+K ++I K KEKE+
Sbjct: 234 RDALKAYEKLEKEKKLSEDNVKDLSSDLQKLTDEYMKKLENIFKQKEKEL 283
>gi|282854667|ref|ZP_06264002.1| ribosome recycling factor [Propionibacterium acnes J139]
gi|386069764|ref|YP_005984660.1| ribosome recycling factor [Propionibacterium acnes ATCC 11828]
gi|422390156|ref|ZP_16470252.1| ribosome recycling factor [Propionibacterium acnes HL103PA1]
gi|422458673|ref|ZP_16535324.1| ribosome recycling factor [Propionibacterium acnes HL050PA2]
gi|422462943|ref|ZP_16539562.1| ribosome recycling factor [Propionibacterium acnes HL060PA1]
gi|422467222|ref|ZP_16543776.1| ribosome recycling factor [Propionibacterium acnes HL110PA4]
gi|422469298|ref|ZP_16545823.1| ribosome recycling factor [Propionibacterium acnes HL110PA3]
gi|422565346|ref|ZP_16640995.1| ribosome recycling factor [Propionibacterium acnes HL082PA2]
gi|422575396|ref|ZP_16650937.1| ribosome recycling factor [Propionibacterium acnes HL001PA1]
gi|282582249|gb|EFB87631.1| ribosome recycling factor [Propionibacterium acnes J139]
gi|314923764|gb|EFS87595.1| ribosome recycling factor [Propionibacterium acnes HL001PA1]
gi|314966222|gb|EFT10321.1| ribosome recycling factor [Propionibacterium acnes HL082PA2]
gi|314981988|gb|EFT26081.1| ribosome recycling factor [Propionibacterium acnes HL110PA3]
gi|315090899|gb|EFT62875.1| ribosome recycling factor [Propionibacterium acnes HL110PA4]
gi|315095112|gb|EFT67088.1| ribosome recycling factor [Propionibacterium acnes HL060PA1]
gi|315104341|gb|EFT76317.1| ribosome recycling factor [Propionibacterium acnes HL050PA2]
gi|327328110|gb|EGE69879.1| ribosome recycling factor [Propionibacterium acnes HL103PA1]
gi|353454131|gb|AER04650.1| ribosome recycling factor [Propionibacterium acnes ATCC 11828]
Length = 184
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +A+ E +RTGRA+P M + ++VE G PL LA V +++T+ I P+D
Sbjct: 12 MGSAVDHAREEFAAIRTGRANPAMFNKLMVEYYGTPTPLQQLASFQVPEARTVLIAPFDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI S LG+NP DG + +PALT+E + K+ +E+ + ++R R
Sbjct: 72 SCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKTKAEEGRIAVRNVR 131
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + D++KK + +D+M RLEKE+D++T+KYV+ D++ K+KE E+ E
Sbjct: 132 RASNDVVKKQEKDKDISEDEMTRLEKELDQVTRKYVEQIDELLKSKESELLE 183
>gi|217077680|ref|YP_002335398.1| ribosome recycling factor [Thermosipho africanus TCF52B]
gi|226703270|sp|B7IDI0.1|RRF_THEAB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|217037535|gb|ACJ76057.1| frr ribosome recycling factor [Thermosipho africanus TCF52B]
Length = 185
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 103/176 (58%), Gaps = 10/176 (5%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ A+ EL KLRTGR SP +L+ I ++ GV P+N +A ++V + ++L I P++
Sbjct: 13 MKKSVEAIDEELKKLRTGRPSPALLEEIKIDYYGVPTPINQVATINVTEERSLIIKPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK------Q 114
N L +E AI +S LGLNP DG + P+ T E Q K V KT E V+ +
Sbjct: 73 NLLSAIEKAIQASDLGLNPTNDGNVVRLVFPSPTTEQRQ---KWVKKTKEIVEHGKIAVR 129
Query: 115 SIRRSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+IRR K L M K G + +D KRLEKE+ LT KY++ D + + KEKEI E
Sbjct: 130 NIRRDVIKELKEMTKNG-EISEDDEKRLEKEVQNLTDKYIEELDKLFERKEKEIME 184
>gi|339639936|ref|ZP_08661380.1| ribosome recycling factor [Streptococcus sp. oral taxon 056 str.
F0418]
gi|339453205|gb|EGP65820.1| ribosome recycling factor [Streptococcus sp. oral taxon 056 str.
F0418]
Length = 185
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGSVRAGRANASLLDRISVEYYGVDTPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERAINASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKIGENAKIAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK D++ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKGLEKDIQKVTDDAVKHIDEMTAHKEKELLE 184
>gi|254420584|ref|ZP_05034308.1| ribosome recycling factor [Brevundimonas sp. BAL3]
gi|196186761|gb|EDX81737.1| ribosome recycling factor [Brevundimonas sp. BAL3]
Length = 185
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+VAL E + LRTGRA+ G+L+ + VE G PL+ +A +SV + + +S+N +D
Sbjct: 13 MEKAVVALKEEFSGLRTGRANAGLLEPVRVEAYGSASPLSAVAAISVPEPRMISVNVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI ++ LGLNP VDGQ L +P LT+E + + K+ K +E K ++R R
Sbjct: 73 GMVVAVEKAIRNANLGLNPIVDGQTLRIPVPPLTEERRKDLVKLAGKYTEQQKIAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KKA + +D+ K+LE +I + T +K D+ K KE+EI
Sbjct: 133 RDANDDLKKAEKAGEISQDEQKKLEADIQKETDAAIKRIDEALKTKEQEI 182
>gi|83311594|ref|YP_421858.1| ribosome recycling factor [Magnetospirillum magneticum AMB-1]
gi|123541757|sp|Q2W4C6.1|RRF_MAGMM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|82946435|dbj|BAE51299.1| Ribosome recycling factor [Magnetospirillum magneticum AMB-1]
Length = 190
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M++A+ L +E + LR+GRAS +LD ++VE G MPL+ V V + + L++ +D
Sbjct: 18 MDSAVEVLKKEFSGLRSGRASINLLDPVVVEAYGQTMPLSQCGTVGVPEPRMLTVQVWDK 77
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AI ++ LGLNP+ DGQ + IP L +E + + KV K SE + S+R R
Sbjct: 78 SQVKAVEKAIANAGLGLNPQADGQMIRVPIPPLNEERRKELQKVAGKYSEQARISVRNVR 137
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KK + +D++K+ EKEI +T + +K D+ KEKEI
Sbjct: 138 RDGMDTLKKMEKDGHISEDEIKKHEKEIQAITDETIKKIDEALGHKEKEI 187
>gi|226313032|ref|YP_002772926.1| ribosome recycling factor [Brevibacillus brevis NBRC 100599]
gi|254809495|sp|C0ZF63.1|RRF_BREBN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|226095980|dbj|BAH44422.1| ribosome recycling factor [Brevibacillus brevis NBRC 100599]
Length = 185
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL R+L+ LR GRA+P MLD + V+ G P++ LA +SV + + L+I P+D
Sbjct: 13 MNKAINALKRDLSSLRAGRANPAMLDRVTVDYYGTPTPISQLANISVPEPRMLTIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LKE++ A+ S LG++P DG + IP LT+E + + K+ K E+ K +IR R
Sbjct: 73 TALKEIDRALQQSDLGISPSNDGVIIRLIIPPLTEERRKELVKLAGKGGEEAKVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK +++ +D +R ++ I + T K++ D I K KEK+I E
Sbjct: 133 RDANDEIKKLEKAATISEDDSRRHQETIQKTTDKFIAEVDKIVKDKEKDILE 184
>gi|50842996|ref|YP_056223.1| ribosome recycling factor [Propionibacterium acnes KPA171202]
gi|289426460|ref|ZP_06428203.1| ribosome recycling factor [Propionibacterium acnes SK187]
gi|289428643|ref|ZP_06430326.1| ribosome recycling factor [Propionibacterium acnes J165]
gi|295131067|ref|YP_003581730.1| ribosome recycling factor [Propionibacterium acnes SK137]
gi|335054668|ref|ZP_08547471.1| ribosome recycling factor [Propionibacterium sp. 434-HC2]
gi|354607714|ref|ZP_09025682.1| ribosome recycling factor [Propionibacterium sp. 5_U_42AFAA]
gi|365963215|ref|YP_004944781.1| ribosome recycling factor [Propionibacterium acnes TypeIA2 P.acn31]
gi|365965458|ref|YP_004947023.1| ribosome recycling factor [Propionibacterium acnes TypeIA2 P.acn17]
gi|365974393|ref|YP_004955952.1| ribosome recycling factor [Propionibacterium acnes TypeIA2 P.acn33]
gi|386024488|ref|YP_005942793.1| ribosome-recycling factor [Propionibacterium acnes 266]
gi|387503897|ref|YP_005945126.1| ribosome recycling factor [Propionibacterium acnes 6609]
gi|407935940|ref|YP_006851582.1| ribosome recycling factor [Propionibacterium acnes C1]
gi|417930300|ref|ZP_12573679.1| ribosome recycling factor [Propionibacterium acnes SK182]
gi|422385528|ref|ZP_16465660.1| ribosome recycling factor [Propionibacterium acnes HL096PA3]
gi|422387825|ref|ZP_16467936.1| ribosome recycling factor [Propionibacterium acnes HL096PA2]
gi|422393747|ref|ZP_16473797.1| ribosome recycling factor [Propionibacterium acnes HL099PA1]
gi|422425516|ref|ZP_16502450.1| ribosome recycling factor [Propionibacterium acnes HL043PA1]
gi|422427475|ref|ZP_16504391.1| ribosome recycling factor [Propionibacterium acnes HL087PA1]
gi|422430569|ref|ZP_16507449.1| ribosome recycling factor [Propionibacterium acnes HL072PA2]
gi|422432558|ref|ZP_16509427.1| ribosome recycling factor [Propionibacterium acnes HL059PA2]
gi|422434277|ref|ZP_16511137.1| ribosome recycling factor [Propionibacterium acnes HL083PA2]
gi|422438724|ref|ZP_16515562.1| ribosome recycling factor [Propionibacterium acnes HL092PA1]
gi|422444232|ref|ZP_16521027.1| ribosome recycling factor [Propionibacterium acnes HL002PA1]
gi|422447068|ref|ZP_16523806.1| ribosome recycling factor [Propionibacterium acnes HL027PA1]
gi|422449600|ref|ZP_16526324.1| ribosome recycling factor [Propionibacterium acnes HL036PA3]
gi|422451312|ref|ZP_16528015.1| ribosome recycling factor [Propionibacterium acnes HL030PA2]
gi|422453467|ref|ZP_16530163.1| ribosome recycling factor [Propionibacterium acnes HL087PA3]
gi|422456143|ref|ZP_16532811.1| ribosome recycling factor [Propionibacterium acnes HL030PA1]
gi|422462607|ref|ZP_16539229.1| ribosome recycling factor [Propionibacterium acnes HL038PA1]
gi|422473553|ref|ZP_16550027.1| ribosome recycling factor [Propionibacterium acnes HL056PA1]
gi|422477255|ref|ZP_16553688.1| ribosome recycling factor [Propionibacterium acnes HL007PA1]
gi|422480030|ref|ZP_16556434.1| ribosome recycling factor [Propionibacterium acnes HL063PA1]
gi|422481307|ref|ZP_16557707.1| ribosome recycling factor [Propionibacterium acnes HL036PA1]
gi|422486072|ref|ZP_16562429.1| ribosome recycling factor [Propionibacterium acnes HL043PA2]
gi|422487379|ref|ZP_16563711.1| ribosome recycling factor [Propionibacterium acnes HL013PA2]
gi|422491346|ref|ZP_16567660.1| ribosome recycling factor [Propionibacterium acnes HL020PA1]
gi|422491994|ref|ZP_16568304.1| ribosome recycling factor [Propionibacterium acnes HL086PA1]
gi|422497029|ref|ZP_16573306.1| ribosome recycling factor [Propionibacterium acnes HL002PA3]
gi|422499463|ref|ZP_16575727.1| ribosome recycling factor [Propionibacterium acnes HL063PA2]
gi|422503228|ref|ZP_16579469.1| ribosome recycling factor [Propionibacterium acnes HL027PA2]
gi|422505496|ref|ZP_16581726.1| ribosome recycling factor [Propionibacterium acnes HL036PA2]
gi|422507000|ref|ZP_16583218.1| ribosome recycling factor [Propionibacterium acnes HL046PA2]
gi|422509928|ref|ZP_16586079.1| ribosome recycling factor [Propionibacterium acnes HL059PA1]
gi|422512913|ref|ZP_16589040.1| ribosome recycling factor [Propionibacterium acnes HL087PA2]
gi|422516776|ref|ZP_16592884.1| ribosome recycling factor [Propionibacterium acnes HL110PA2]
gi|422517277|ref|ZP_16593377.1| ribosome recycling factor [Propionibacterium acnes HL074PA1]
gi|422521254|ref|ZP_16597286.1| ribosome recycling factor [Propionibacterium acnes HL045PA1]
gi|422522727|ref|ZP_16598748.1| ribosome recycling factor [Propionibacterium acnes HL053PA2]
gi|422525673|ref|ZP_16601674.1| ribosome recycling factor [Propionibacterium acnes HL083PA1]
gi|422528887|ref|ZP_16604862.1| ribosome recycling factor [Propionibacterium acnes HL053PA1]
gi|422530499|ref|ZP_16606458.1| ribosome recycling factor [Propionibacterium acnes HL110PA1]
gi|422533676|ref|ZP_16609607.1| ribosome recycling factor [Propionibacterium acnes HL072PA1]
gi|422536681|ref|ZP_16612584.1| ribosome recycling factor [Propionibacterium acnes HL078PA1]
gi|422540241|ref|ZP_16616110.1| ribosome recycling factor [Propionibacterium acnes HL013PA1]
gi|422542237|ref|ZP_16618089.1| ribosome recycling factor [Propionibacterium acnes HL037PA1]
gi|422544523|ref|ZP_16620361.1| ribosome recycling factor [Propionibacterium acnes HL082PA1]
gi|422547132|ref|ZP_16622954.1| ribosome recycling factor [Propionibacterium acnes HL050PA3]
gi|422548605|ref|ZP_16624417.1| ribosome recycling factor [Propionibacterium acnes HL050PA1]
gi|422551203|ref|ZP_16626998.1| ribosome recycling factor [Propionibacterium acnes HL005PA3]
gi|422555562|ref|ZP_16631330.1| ribosome recycling factor [Propionibacterium acnes HL005PA2]
gi|422557137|ref|ZP_16632882.1| ribosome recycling factor [Propionibacterium acnes HL025PA2]
gi|422560377|ref|ZP_16636067.1| ribosome recycling factor [Propionibacterium acnes HL005PA1]
gi|422563928|ref|ZP_16639600.1| ribosome recycling factor [Propionibacterium acnes HL046PA1]
gi|422566842|ref|ZP_16642470.1| ribosome recycling factor [Propionibacterium acnes HL002PA2]
gi|422571181|ref|ZP_16646774.1| ribosome recycling factor [Propionibacterium acnes HL067PA1]
gi|422579425|ref|ZP_16654947.1| ribosome recycling factor [Propionibacterium acnes HL005PA4]
gi|60390690|sp|Q6A7K0.1|RRF_PROAC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|50840598|gb|AAT83265.1| ribosome recycling factor [Propionibacterium acnes KPA171202]
gi|289153188|gb|EFD01906.1| ribosome recycling factor [Propionibacterium acnes SK187]
gi|289158041|gb|EFD06261.1| ribosome recycling factor [Propionibacterium acnes J165]
gi|291377325|gb|ADE01180.1| ribosome recycling factor [Propionibacterium acnes SK137]
gi|313763566|gb|EFS34930.1| ribosome recycling factor [Propionibacterium acnes HL013PA1]
gi|313773505|gb|EFS39471.1| ribosome recycling factor [Propionibacterium acnes HL074PA1]
gi|313793959|gb|EFS41983.1| ribosome recycling factor [Propionibacterium acnes HL110PA1]
gi|313801346|gb|EFS42597.1| ribosome recycling factor [Propionibacterium acnes HL110PA2]
gi|313807974|gb|EFS46455.1| ribosome recycling factor [Propionibacterium acnes HL087PA2]
gi|313811557|gb|EFS49271.1| ribosome recycling factor [Propionibacterium acnes HL083PA1]
gi|313816746|gb|EFS54460.1| ribosome recycling factor [Propionibacterium acnes HL059PA1]
gi|313819543|gb|EFS57257.1| ribosome recycling factor [Propionibacterium acnes HL046PA2]
gi|313822134|gb|EFS59848.1| ribosome recycling factor [Propionibacterium acnes HL036PA1]
gi|313823632|gb|EFS61346.1| ribosome recycling factor [Propionibacterium acnes HL036PA2]
gi|313825956|gb|EFS63670.1| ribosome recycling factor [Propionibacterium acnes HL063PA1]
gi|313829423|gb|EFS67137.1| ribosome recycling factor [Propionibacterium acnes HL063PA2]
gi|313831297|gb|EFS69011.1| ribosome recycling factor [Propionibacterium acnes HL007PA1]
gi|313834908|gb|EFS72622.1| ribosome recycling factor [Propionibacterium acnes HL056PA1]
gi|313839933|gb|EFS77647.1| ribosome recycling factor [Propionibacterium acnes HL086PA1]
gi|314914720|gb|EFS78551.1| ribosome recycling factor [Propionibacterium acnes HL005PA4]
gi|314919318|gb|EFS83149.1| ribosome recycling factor [Propionibacterium acnes HL050PA1]
gi|314920772|gb|EFS84603.1| ribosome recycling factor [Propionibacterium acnes HL050PA3]
gi|314924719|gb|EFS88550.1| ribosome recycling factor [Propionibacterium acnes HL036PA3]
gi|314930451|gb|EFS94282.1| ribosome recycling factor [Propionibacterium acnes HL067PA1]
gi|314954392|gb|EFS98798.1| ribosome recycling factor [Propionibacterium acnes HL027PA1]
gi|314957475|gb|EFT01578.1| ribosome recycling factor [Propionibacterium acnes HL002PA1]
gi|314962110|gb|EFT06211.1| ribosome recycling factor [Propionibacterium acnes HL002PA2]
gi|314963689|gb|EFT07789.1| ribosome recycling factor [Propionibacterium acnes HL082PA1]
gi|314968483|gb|EFT12581.1| ribosome recycling factor [Propionibacterium acnes HL037PA1]
gi|314974173|gb|EFT18269.1| ribosome recycling factor [Propionibacterium acnes HL053PA1]
gi|314976537|gb|EFT20632.1| ribosome recycling factor [Propionibacterium acnes HL045PA1]
gi|314978900|gb|EFT22994.1| ribosome recycling factor [Propionibacterium acnes HL072PA2]
gi|314984356|gb|EFT28448.1| ribosome recycling factor [Propionibacterium acnes HL005PA1]
gi|314986546|gb|EFT30638.1| ribosome recycling factor [Propionibacterium acnes HL005PA2]
gi|314990905|gb|EFT34996.1| ribosome recycling factor [Propionibacterium acnes HL005PA3]
gi|315079539|gb|EFT51532.1| ribosome recycling factor [Propionibacterium acnes HL053PA2]
gi|315081233|gb|EFT53209.1| ribosome recycling factor [Propionibacterium acnes HL078PA1]
gi|315083599|gb|EFT55575.1| ribosome recycling factor [Propionibacterium acnes HL027PA2]
gi|315087116|gb|EFT59092.1| ribosome recycling factor [Propionibacterium acnes HL002PA3]
gi|315089289|gb|EFT61265.1| ribosome recycling factor [Propionibacterium acnes HL072PA1]
gi|315095312|gb|EFT67288.1| ribosome recycling factor [Propionibacterium acnes HL038PA1]
gi|315099193|gb|EFT71169.1| ribosome recycling factor [Propionibacterium acnes HL059PA2]
gi|315100324|gb|EFT72300.1| ribosome recycling factor [Propionibacterium acnes HL046PA1]
gi|315106750|gb|EFT78726.1| ribosome recycling factor [Propionibacterium acnes HL030PA1]
gi|315108992|gb|EFT80968.1| ribosome recycling factor [Propionibacterium acnes HL030PA2]
gi|327328425|gb|EGE70187.1| ribosome recycling factor [Propionibacterium acnes HL096PA2]
gi|327329709|gb|EGE71465.1| ribosome recycling factor [Propionibacterium acnes HL096PA3]
gi|327444212|gb|EGE90866.1| ribosome recycling factor [Propionibacterium acnes HL043PA2]
gi|327444909|gb|EGE91563.1| ribosome recycling factor [Propionibacterium acnes HL043PA1]
gi|327446394|gb|EGE93048.1| ribosome recycling factor [Propionibacterium acnes HL013PA2]
gi|327452018|gb|EGE98672.1| ribosome recycling factor [Propionibacterium acnes HL092PA1]
gi|327454945|gb|EGF01600.1| ribosome recycling factor [Propionibacterium acnes HL087PA3]
gi|327457769|gb|EGF04424.1| ribosome recycling factor [Propionibacterium acnes HL083PA2]
gi|328752149|gb|EGF65765.1| ribosome recycling factor [Propionibacterium acnes HL020PA1]
gi|328755222|gb|EGF68838.1| ribosome recycling factor [Propionibacterium acnes HL087PA1]
gi|328758299|gb|EGF71915.1| ribosome recycling factor [Propionibacterium acnes HL025PA2]
gi|328760030|gb|EGF73611.1| ribosome recycling factor [Propionibacterium acnes HL099PA1]
gi|332675946|gb|AEE72762.1| ribosome-recycling factor [Propionibacterium acnes 266]
gi|333763843|gb|EGL41265.1| ribosome recycling factor [Propionibacterium sp. 434-HC2]
gi|335277942|gb|AEH29847.1| ribosome recycling factor [Propionibacterium acnes 6609]
gi|340772427|gb|EGR94931.1| ribosome recycling factor [Propionibacterium acnes SK182]
gi|353556260|gb|EHC25631.1| ribosome recycling factor [Propionibacterium sp. 5_U_42AFAA]
gi|365739896|gb|AEW84098.1| ribosome recycling factor [Propionibacterium acnes TypeIA2 P.acn31]
gi|365742139|gb|AEW81833.1| ribosome recycling factor [Propionibacterium acnes TypeIA2 P.acn17]
gi|365744392|gb|AEW79589.1| ribosome recycling factor [Propionibacterium acnes TypeIA2 P.acn33]
gi|407904521|gb|AFU41351.1| ribosome recycling factor [Propionibacterium acnes C1]
gi|456738652|gb|EMF63219.1| ribosome recycling factor [Propionibacterium acnes FZ1/2/0]
Length = 184
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +A+ E +RTGRA+P M + ++VE G PL LA V +++T+ I P+D
Sbjct: 12 MGSAVDHAREEFAAIRTGRANPAMFNKLMVEYYGTPTPLQQLASFQVPEARTVLIAPFDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI S LG+NP DG + +PALT+E + K+ +E+ + ++R R
Sbjct: 72 SCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKTKAEEGRIAVRNVR 131
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + D++KK + +D+M RLEKE+D++T+KYV+ D++ K+KE E+ E
Sbjct: 132 RASNDVVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLKSKESELLE 183
>gi|409997430|ref|YP_006751831.1| ribosome-recycling factor [Lactobacillus casei W56]
gi|406358442|emb|CCK22712.1| Ribosome-recycling factor [Lactobacillus casei W56]
Length = 218
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L REL +R GRA+ +L+ I VE G PLN +A +++ + + L ++PYD ++LK +
Sbjct: 19 SLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIPEPRVLQVSPYDKSSLKNI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+NP DG + IP LT E + + K V K SE K +IR R++ LD
Sbjct: 79 ETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKYSESAKIAIRNIRREGLDK 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+K+ + +D + RLEK++ + T K D+I AKEK++
Sbjct: 139 LKRQEKDGDITEDDLHRLEKDMQKATDDATKRIDEIAAAKEKKL 182
>gi|332705597|ref|ZP_08425673.1| ribosome recycling factor [Moorea producens 3L]
gi|332355389|gb|EGJ34853.1| ribosome recycling factor [Moorea producens 3L]
Length = 182
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A R +RTGRAS +LD ++VE G PL LA ++ D+ T++I PYD
Sbjct: 10 MQKAVEATQRAFNTIRTGRASTSLLDRVMVEYYGTPTPLKSLANINTPDASTITIQPYDK 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L ++E AI S L L P +G+ + IP LT E + K+ +K +E+ + SIR R
Sbjct: 70 SMLSQIEKAITLSDLDLPPNNNGEVVRLNIPPLTSERRKEFVKMASKFAEEGRVSIRNIR 129
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K + + +D+ + L+ EI +LT KY K D++ AKEK+I
Sbjct: 130 RDAVDSVRKQDKNKEISEDESRDLQDEIQKLTNKYTKKVDEVFAAKEKDI 179
>gi|328950711|ref|YP_004368046.1| ribosome-recycling factor [Marinithermus hydrothermalis DSM 14884]
gi|328451035|gb|AEB11936.1| Ribosome-recycling factor [Marinithermus hydrothermalis DSM 14884]
Length = 185
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + A L LRTGRA+P +L H+ VE G MPLN +A VS D++TL + +D
Sbjct: 13 MQKTVEAFEANLGGLRTGRANPALLAHLKVEYYGSVMPLNQVASVSAPDARTLVVQAWDQ 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L +E AI S LGLNP G L IP LT+E + + + +E+ + ++R +R
Sbjct: 73 NALPAIEKAIRESDLGLNPNNRGDALYIQIPPLTEERRKEIARTARGYAEEARIAVRNAR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ALD +KK L +D+ KR + E+ ++T +++ D I + KE EI
Sbjct: 133 REALDQIKKLEKEKLLSEDEAKRAQDEVQKITNEFIDKIDAILEKKEHEI 182
>gi|319946529|ref|ZP_08020764.1| ribosome recycling factor [Streptococcus australis ATCC 700641]
gi|417920041|ref|ZP_12563559.1| ribosome recycling factor [Streptococcus australis ATCC 700641]
gi|319747275|gb|EFV99533.1| ribosome recycling factor [Streptococcus australis ATCC 700641]
gi|342831148|gb|EGU65471.1| ribosome recycling factor [Streptococcus australis ATCC 700641]
Length = 185
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L RE +R GRA+ +LD I V+ GV PLN +A +++ +++ + I P+D ++LK++
Sbjct: 19 SLGREFGSIRAGRANASLLDRIYVQYYGVDTPLNQIASITIPEARVMLITPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 EHALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEKEI ++T VK D++ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKGLEKEIQKVTDDAVKHIDEMTAHKEKELLE 184
>gi|395203924|ref|ZP_10394967.1| ribosome recycling factor [Propionibacterium humerusii P08]
gi|422439620|ref|ZP_16516441.1| ribosome recycling factor [Propionibacterium acnes HL037PA3]
gi|422471774|ref|ZP_16548265.1| ribosome recycling factor [Propionibacterium acnes HL037PA2]
gi|422571876|ref|ZP_16647453.1| ribosome recycling factor [Propionibacterium acnes HL044PA1]
gi|313836793|gb|EFS74507.1| ribosome recycling factor [Propionibacterium acnes HL037PA2]
gi|314929799|gb|EFS93630.1| ribosome recycling factor [Propionibacterium acnes HL044PA1]
gi|314972228|gb|EFT16325.1| ribosome recycling factor [Propionibacterium acnes HL037PA3]
gi|328907655|gb|EGG27419.1| ribosome recycling factor [Propionibacterium humerusii P08]
Length = 184
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +A+ E +RTGRA+P M + ++VE G PL LA V +++T+ I P+D
Sbjct: 12 MGSAVGHAREEFAAIRTGRANPAMFNKLMVEYYGTPTPLQQLASFQVPEARTVLIAPFDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI S LG+NP DG + +PALT+E + K+ +E+ + ++R R
Sbjct: 72 SCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKTKAEEGRIAVRNIR 131
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + D++KK + +D+M RLEKE+D++T+KYV+ D++ K+KE E+ E
Sbjct: 132 RASNDVVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLKSKESELLE 183
>gi|408528987|emb|CCK27161.1| Ribosome-recycling factor [Streptomyces davawensis JCM 4913]
Length = 221
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 95/172 (55%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 49 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMAVVTPFDK 108
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV +ED + SIR R
Sbjct: 109 SALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVAKGKAEDSRVSIRSVR 168
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 169 RKAKDAIDKLVKDGEVGEDEGRRAEKELDDATHKYVAQVDELLKHKEAELLE 220
>gi|384218537|ref|YP_005609703.1| ribosome recycling factor [Bradyrhizobium japonicum USDA 6]
gi|354957436|dbj|BAL10115.1| ribosome recycling factor [Bradyrhizobium japonicum USDA 6]
Length = 187
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ AL EL LRTGRAS MLD + VE G MPLN LA VSV + + +S+ +D
Sbjct: 15 MQGAVQALKHELGGLRTGRASASMLDPVQVEAYGSHMPLNQLATVSVPEPRLISVQVWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AIV S LGL+P +GQ L IP L +E + + KV K +E K + R R
Sbjct: 75 SMVKPVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEAAKVAARHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD++KK + +D KR E+ + T + D + AKEKEI
Sbjct: 135 RDGLDVLKKLEKNHEMSEDDQKRHADEVQKATDGTISEIDQLLAAKEKEI 184
>gi|302554446|ref|ZP_07306788.1| ribosome recycling factor [Streptomyces viridochromogenes DSM
40736]
gi|302472064|gb|EFL35157.1| ribosome recycling factor [Streptomyces viridochromogenes DSM
40736]
Length = 185
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV ED K SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKGKGEDAKISIRSVR 132
Query: 121 QK---ALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K A+D + K G + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKEAIDKLIKDG-EVGEDEGRRAEKELDDTTAKYVTQVDELLKHKEAELLE 184
>gi|374710441|ref|ZP_09714875.1| ribosome recycling factor [Sporolactobacillus inulinus CASD]
Length = 186
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ A REL +R GRA+P +L+ + VE G + PLN +A ++V +++ L I PYD
Sbjct: 14 MGKAVKAFQRELVTVRAGRANPSLLNKVTVEYYGAETPLNQVASITVPEARLLLIQPYDR 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E I+ S LG+ P DGQ + AIP LT+E + K+V K +E+ K ++R R
Sbjct: 74 TALPNIEKGILKSDLGVTPTNDGQVIRIAIPPLTEERRADLVKMVRKMAEEAKIAVRNVR 133
Query: 121 QKALDMMKKAG--SSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK + L KD + E +I +LT + +K+ D + KEKE+
Sbjct: 134 RDANDQVKKMAKNNELTKDDVHEAEDDIQKLTNETIKAVDQLAADKEKEM 183
>gi|455642464|gb|EMF21624.1| ribosome recycling factor [Streptomyces gancidicus BKS 13-15]
Length = 185
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV ED K SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKGKGEDAKISIRSVR 132
Query: 121 QK---ALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K A+D + K G + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKEAIDKLIKDG-EVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|335038956|ref|ZP_08532150.1| Ribosome-recycling factor [Caldalkalibacillus thermarum TA2.A1]
gi|334181155|gb|EGL83726.1| Ribosome-recycling factor [Caldalkalibacillus thermarum TA2.A1]
Length = 185
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ L EL LR GRA+P +LD + V+ G + P+N LA +S + + L+I P+D
Sbjct: 13 MDKAVNQLKTELASLRAGRATPALLDKVYVDYYGTQTPVNQLANISAPEPRLLTIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LGL P DG + IPALT+E Q + K+V K ED K +IR R
Sbjct: 73 SALDAIEKAILKSELGLTPNNDGNIIRITIPALTEERRQELVKMVKKYGEDAKVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + +KK + +D+ +R + + + T +++ D I KEKEI E
Sbjct: 133 RDANESIKKIEKEGGISEDESRRYQDTVQKATDEHIAQVDQIIAKKEKEIME 184
>gi|171780175|ref|ZP_02921079.1| hypothetical protein STRINF_01963 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379705770|ref|YP_005204229.1| ribosome recycling factor [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171281523|gb|EDT46958.1| ribosome recycling factor [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|374682469|gb|AEZ62758.1| ribosome recycling factor [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 185
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE G PLN LA ++V +++ L I+P+D ++LK++
Sbjct: 19 SLAREFAAIRAGRANASLLDRIQVEYYGAMTPLNQLASITVPEARVLLISPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 EHAINASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I + T + VK D + KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKVLEKDIQKATDEAVKHIDAMTANKEKELLE 184
>gi|387783505|ref|YP_006069588.1| ribosome recycling factor (ribosome-releasing factor) (RRF)
[Streptococcus salivarius JIM8777]
gi|338744387|emb|CCB94753.1| ribosome recycling factor (ribosome-releasing factor) (RRF)
[Streptococcus salivarius JIM8777]
Length = 185
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE G PLN LA ++V +++ L I+P+D ++ ++
Sbjct: 19 SLAREFGSIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVLLISPFDKGSIADI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI S LG+NP DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERAINESDLGINPANDGSVVRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KK + +DQ+K LEK+I + T VK D + KEKE+
Sbjct: 139 AKKQEKDKEITEDQLKSLEKDIQKATDDAVKKIDSMTAEKEKEL 182
>gi|424842367|ref|ZP_18266992.1| ribosome recycling factor [Saprospira grandis DSM 2844]
gi|395320565|gb|EJF53486.1| ribosome recycling factor [Saprospira grandis DSM 2844]
Length = 187
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +IV REL K+R+G+ASP M+ + VE G+ PLN +A + D++TL I P++
Sbjct: 16 MQNSIVHFQRELIKIRSGKASPQMVADVKVEYYGMPTPLNQVAGIKTTDARTLVIQPFEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E A+ + LG+ P+ DG+ + +P LT+E + + K + +ED K SIR +R
Sbjct: 76 KMVPVVEQALYGANLGITPQSDGEVVRMVVPPLTEERRKQLVKQASGFAEDAKVSIRNAR 135
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+ +K A P+D KR E+ + ELT KY K D I KE+E+
Sbjct: 136 RDAIQDVKAAVKEGYPEDAGKRSEQTVQELTDKYSKQVDSIFAKKEEEL 184
>gi|336395301|ref|ZP_08576700.1| ribosome recycling factor [Lactobacillus farciminis KCTC 3681]
Length = 185
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 105/173 (60%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ LSREL +R G+A+ +L ++ V G ++PLN +A +++ +++ L I PYD
Sbjct: 13 MSKSVDVLSRELANIRAGKANASILSNVRVMYYGTEVPLNQVASINIPEARVLMITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L ++E AI SS LGLNP DG + IP LT E Q + K V K +E + ++R R
Sbjct: 73 SSLDDIEHAINSSDLGLNPANDGSVIRLVIPQLTGERRQEIAKQVGKEAESGRIAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
++A+D +KK + + +D++ LEK++ ++T + D + KEKEI EG
Sbjct: 133 REAMDDLKKQQKNNDITEDELHTLEKDVQKVTDDAIAQMDKLAADKEKEITEG 185
>gi|226356272|ref|YP_002786012.1| ribosome recycling factor [Deinococcus deserti VCD115]
gi|259494537|sp|C1CVP1.1|RRF_DEIDV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|226318262|gb|ACO46258.1| putative Ribosome recycling factor (Ribosome-releasing factor)
(RRF) [Deinococcus deserti VCD115]
Length = 183
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 99/168 (58%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL L+ LRTGRA+PG+L +IV+ G MP++ +A ++ D++TL I P+D
Sbjct: 15 MGKAIEALESNLSVLRTGRANPGILKKVIVDYYGSTMPIDQVASITTPDARTLVITPWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI S LGLNP G + ++P LT+E + + K +ED + ++R R
Sbjct: 75 GALGPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEDARIAVRNIR 134
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ ALD +KK + D++KR E E+ ++T +++ D KE+EI
Sbjct: 135 KHALDEVKKV-EGVGDDEIKRGEAEVQKITDEFIARVDSTFHKKEQEI 181
>gi|337288568|ref|YP_004628040.1| Ribosome-recycling factor [Thermodesulfobacterium sp. OPB45]
gi|334902306|gb|AEH23112.1| Ribosome-recycling factor [Thermodesulfobacterium geofontis OPF15]
Length = 184
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ EL+ +RTGRAS +L+ I V+ G KMP+ +A V+V++ K L I P+D
Sbjct: 12 MEKSLKNFKEELSHIRTGRASIALLEAIKVDCYGTKMPIPQIATVNVVEGKMLVIQPWDI 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N +KE+E AI S LG+NP DG+ + +P LT+E + + KV +K +E+ + +IR R
Sbjct: 72 NLVKEIEKAIQKSDLGINPTSDGKTIKLIMPPLTEERRKELIKVASKLAEEARIAIRNIR 131
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ L+ K K + +D +LEK++ +LT +Y++ + K KEKEI
Sbjct: 132 RDVLEKFKTAKKKGEISEDDYLQLEKKVQKLTDEYIEKINTALKEKEKEI 181
>gi|393766242|ref|ZP_10354798.1| ribosome recycling factor [Methylobacterium sp. GXF4]
gi|392728023|gb|EIZ85332.1| ribosome recycling factor [Methylobacterium sp. GXF4]
Length = 187
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +LS++L LRTGRA+P +LD I V+ G MP+ +A VSV + + LSI+ +D
Sbjct: 15 MQGAVASLSKDLGSLRTGRATPSLLDPIQVDAYGSSMPMAQVATVSVPEPRLLSISVWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI S LGLNP+ +GQ + IP + ++ + M KV K +E+ + ++R R
Sbjct: 75 SMVTAVEKAIRESDLGLNPQTEGQTIRLRIPEMNEQRRKEMVKVAHKYTEEARVAVRHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD +KK S++ +D KR ++ + T +++ D + AKEKEI
Sbjct: 135 RDGLDHLKKLLKDSAISEDDEKRQAADVQKATDQFIAEIDGVLAAKEKEI 184
>gi|313891269|ref|ZP_07824887.1| ribosome recycling factor [Streptococcus pseudoporcinus SPIN 20026]
gi|416852941|ref|ZP_11910086.1| ribosome recycling factor [Streptococcus pseudoporcinus LQ 940-04]
gi|313120336|gb|EFR43457.1| ribosome recycling factor [Streptococcus pseudoporcinus SPIN 20026]
gi|356740430|gb|EHI65662.1| ribosome recycling factor [Streptococcus pseudoporcinus LQ 940-04]
Length = 185
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
E + +LSRE +R GRA+ +LD I V+ G PLN L+ ++V +++ L I+P+D
Sbjct: 13 FEQSFQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLSSITVPEARVLLISPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N++K++E AI +S LG+ P DG + IPALT+E + + K V K E+ K +IR R
Sbjct: 73 NSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKNLAKEVKKVGENQKVAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D KK + +D++K LEK+I ++T +K D + KEKE+
Sbjct: 133 RDAMDEAKKQEKDKEISEDELKTLEKDIQKVTDDAIKHIDAMTAEKEKEL 182
>gi|383771578|ref|YP_005450643.1| ribosome recycling factor [Bradyrhizobium sp. S23321]
gi|381359701|dbj|BAL76531.1| ribosome recycling factor [Bradyrhizobium sp. S23321]
Length = 187
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +L EL LRTGRAS MLD + VE G MPLN LA VSV + + +S+ +D
Sbjct: 15 MQGAVQSLKHELGGLRTGRASGSMLDPVQVEAYGSHMPLNQLATVSVPEPRMISVQVWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AIV S LGL+P +GQ L IP L +E + + KV K +E K + R R
Sbjct: 75 SMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEAAKVAARHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD++KK + +D KR E+ ++T + D + AKEKEI
Sbjct: 135 RDGLDVLKKLEKNHEMSEDDQKRHADEVQKVTDGTITEIDQLLAAKEKEI 184
>gi|125718424|ref|YP_001035557.1| ribosome recycling factor [Streptococcus sanguinis SK36]
gi|323351162|ref|ZP_08086818.1| ribosome recycling factor [Streptococcus sanguinis VMC66]
gi|401681510|ref|ZP_10813410.1| ribosome recycling factor [Streptococcus sp. AS14]
gi|422820823|ref|ZP_16869016.1| ribosome recycling factor [Streptococcus sanguinis SK353]
gi|422823145|ref|ZP_16871333.1| ribosome recycling factor [Streptococcus sanguinis SK405]
gi|422826768|ref|ZP_16874947.1| ribosome recycling factor [Streptococcus sanguinis SK678]
gi|422847126|ref|ZP_16893809.1| ribosome recycling factor [Streptococcus sanguinis SK72]
gi|422848211|ref|ZP_16894887.1| ribosome recycling factor [Streptococcus sanguinis SK115]
gi|422851207|ref|ZP_16897877.1| ribosome recycling factor [Streptococcus sanguinis SK150]
gi|422854694|ref|ZP_16901358.1| ribosome recycling factor [Streptococcus sanguinis SK160]
gi|422855092|ref|ZP_16901750.1| ribosome recycling factor [Streptococcus sanguinis SK1]
gi|422857982|ref|ZP_16904632.1| ribosome recycling factor [Streptococcus sanguinis SK1057]
gi|422862075|ref|ZP_16908707.1| ribosome recycling factor [Streptococcus sanguinis SK408]
gi|422865044|ref|ZP_16911669.1| ribosome recycling factor [Streptococcus sanguinis SK1058]
gi|422878344|ref|ZP_16924810.1| ribosome recycling factor [Streptococcus sanguinis SK1059]
gi|422882700|ref|ZP_16929156.1| ribosome recycling factor [Streptococcus sanguinis SK355]
gi|422884574|ref|ZP_16931022.1| ribosome recycling factor [Streptococcus sanguinis SK49]
gi|422928198|ref|ZP_16961140.1| ribosome recycling factor [Streptococcus sanguinis ATCC 29667]
gi|422931194|ref|ZP_16964125.1| ribosome recycling factor [Streptococcus sanguinis SK340]
gi|166231520|sp|A3CPA2.1|RRF_STRSV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|125498341|gb|ABN45007.1| Ribosome recycling factor, putative [Streptococcus sanguinis SK36]
gi|322122386|gb|EFX94097.1| ribosome recycling factor [Streptococcus sanguinis VMC66]
gi|324991441|gb|EGC23374.1| ribosome recycling factor [Streptococcus sanguinis SK353]
gi|324993795|gb|EGC25714.1| ribosome recycling factor [Streptococcus sanguinis SK405]
gi|324994886|gb|EGC26799.1| ribosome recycling factor [Streptococcus sanguinis SK678]
gi|325687319|gb|EGD29341.1| ribosome recycling factor [Streptococcus sanguinis SK72]
gi|325690743|gb|EGD32744.1| ribosome recycling factor [Streptococcus sanguinis SK115]
gi|325694795|gb|EGD36700.1| ribosome recycling factor [Streptococcus sanguinis SK150]
gi|325696189|gb|EGD38080.1| ribosome recycling factor [Streptococcus sanguinis SK160]
gi|327460953|gb|EGF07286.1| ribosome recycling factor [Streptococcus sanguinis SK1057]
gi|327463069|gb|EGF09390.1| ribosome recycling factor [Streptococcus sanguinis SK1]
gi|327474670|gb|EGF20075.1| ribosome recycling factor [Streptococcus sanguinis SK408]
gi|327490228|gb|EGF22016.1| ribosome recycling factor [Streptococcus sanguinis SK1058]
gi|332358733|gb|EGJ36556.1| ribosome recycling factor [Streptococcus sanguinis SK355]
gi|332359004|gb|EGJ36825.1| ribosome recycling factor [Streptococcus sanguinis SK49]
gi|332367318|gb|EGJ45053.1| ribosome recycling factor [Streptococcus sanguinis SK1059]
gi|339617343|gb|EGQ21969.1| ribosome recycling factor [Streptococcus sanguinis ATCC 29667]
gi|339620376|gb|EGQ24946.1| ribosome recycling factor [Streptococcus sanguinis SK340]
gi|400186280|gb|EJO20493.1| ribosome recycling factor [Streptococcus sp. AS14]
Length = 185
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D +++K++
Sbjct: 19 SLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK D++ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTANKEKELLE 184
>gi|352518139|ref|YP_004887456.1| ribosome recycling factor [Tetragenococcus halophilus NBRC 12172]
gi|348602246|dbj|BAK95292.1| ribosome recycling factor [Tetragenococcus halophilus NBRC 12172]
Length = 185
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A L +L ++R GRA+ +LD + V GV PLN LA +++ +++ L I P+D
Sbjct: 13 MEKATDNLQYQLGQIRAGRANASLLDRVNVVYYGVPTPLNQLASITIPEARVLMIKPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+E+E +I++S +G+ P DG + IP LT+E + + K V K +E K S+R +R
Sbjct: 73 TMLQEIEKSILASDVGITPTNDGSVVRLVIPQLTEERRKELAKEVGKDAETAKVSVRNAR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++A+D KK S + +D ++ EK+I +LT + +K+ DDI KE E+
Sbjct: 133 REAMDEYKKQEKNSDITEDDLRTAEKDIQDLTDQNIKNIDDISSDKENEL 182
>gi|433635946|ref|YP_007269573.1| Ribosome recycling factor Frr (ribosome releasing factor) (RRF)
[Mycobacterium canettii CIPT 140070017]
gi|432167539|emb|CCK65057.1| Ribosome recycling factor Frr (ribosome releasing factor) (RRF)
[Mycobacterium canettii CIPT 140070017]
Length = 185
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L+ +RTGRA+PGM I ++ G P+ LA ++V +++ + I PY+
Sbjct: 13 MEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGATTPITQLASINVPEARLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L+ +E AI +S LG+NP DG + A+P LT+E + + K E+ K S+R R
Sbjct: 73 NQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ + +K G + +D++ R EK++D+ T +YV D++ K KE E+ E
Sbjct: 133 RKAMEELHRIRKEGEA-GEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELLE 184
>gi|305665271|ref|YP_003861558.1| ribosome releasing factor [Maribacter sp. HTCC2170]
gi|88710025|gb|EAR02257.1| ribosome releasing factor [Maribacter sp. HTCC2170]
Length = 185
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+AAI L +E K+R G+A+P ML ++V+ G + PL+ +A ++ D +TLS+ P++
Sbjct: 16 MDAAITHLEKEFVKIRAGKANPAMLSSVMVDYYGSQTPLSQVANINTPDGRTLSVQPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L+E+E AI+ + LG NP +G +I +P LT+E + K +E K R +R
Sbjct: 76 NMLQEIETAIMHANLGFNPMNNGDFVIINVPPLTEERRIQLAKQAKAEAEHAKVGARNAR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q+A +K + +D K E ++ +LT KY K DD AKE EI
Sbjct: 136 QEANKEIKDLDDA-SEDMKKNAEMDVQDLTDKYSKKIDDFLAAKEAEI 182
>gi|15610019|ref|NP_217398.1| Ribosome recycling factor Frr (ribosome releasing factor) (RRF)
[Mycobacterium tuberculosis H37Rv]
gi|15842423|ref|NP_337460.1| ribosome recycling factor [Mycobacterium tuberculosis CDC1551]
gi|31794058|ref|NP_856551.1| ribosome recycling factor [Mycobacterium bovis AF2122/97]
gi|148662726|ref|YP_001284249.1| ribosome recycling factor [Mycobacterium tuberculosis H37Ra]
gi|148824071|ref|YP_001288825.1| ribosome recycling factor [Mycobacterium tuberculosis F11]
gi|167969509|ref|ZP_02551786.1| ribosome recycling factor [Mycobacterium tuberculosis H37Ra]
gi|253798030|ref|YP_003031031.1| ribosome recycling factor [Mycobacterium tuberculosis KZN 1435]
gi|254232977|ref|ZP_04926304.1| ribosome recycling factor frr (ribosome releasing factor)
[Mycobacterium tuberculosis C]
gi|254365523|ref|ZP_04981568.1| ribosome recycling factor frr (ribosome releasing factor)
[Mycobacterium tuberculosis str. Haarlem]
gi|254551951|ref|ZP_05142398.1| ribosome recycling factor [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289444437|ref|ZP_06434181.1| ribosome recycling factor [Mycobacterium tuberculosis T46]
gi|289448548|ref|ZP_06438292.1| ribosome recycling factor frr [Mycobacterium tuberculosis CPHL_A]
gi|289571072|ref|ZP_06451299.1| ribosome recycling factor frr [Mycobacterium tuberculosis T17]
gi|289575587|ref|ZP_06455814.1| ribosome recycling factor frr [Mycobacterium tuberculosis K85]
gi|289746681|ref|ZP_06506059.1| ribosome recycling factor frr [Mycobacterium tuberculosis 02_1987]
gi|289751547|ref|ZP_06510925.1| ribosome recycling factor frr [Mycobacterium tuberculosis T92]
gi|289754994|ref|ZP_06514372.1| ribosome recycling factor frr [Mycobacterium tuberculosis EAS054]
gi|289759003|ref|ZP_06518381.1| ribosome releasing factor [Mycobacterium tuberculosis T85]
gi|289763059|ref|ZP_06522437.1| ribosome recycling factor frr (ribosome releasing factor)
[Mycobacterium tuberculosis GM 1503]
gi|294994025|ref|ZP_06799716.1| ribosome recycling factor [Mycobacterium tuberculosis 210]
gi|297635498|ref|ZP_06953278.1| ribosome recycling factor [Mycobacterium tuberculosis KZN 4207]
gi|297732497|ref|ZP_06961615.1| ribosome recycling factor [Mycobacterium tuberculosis KZN R506]
gi|298526351|ref|ZP_07013760.1| ribosome recycling factor frr (ribosome releasing factor)
[Mycobacterium tuberculosis 94_M4241A]
gi|306777168|ref|ZP_07415505.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu001]
gi|306781075|ref|ZP_07419412.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu002]
gi|306785714|ref|ZP_07424036.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu003]
gi|306789754|ref|ZP_07428076.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu004]
gi|306794568|ref|ZP_07432870.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu005]
gi|306798809|ref|ZP_07437111.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu006]
gi|306804656|ref|ZP_07441324.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu008]
gi|306808849|ref|ZP_07445517.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu007]
gi|306968949|ref|ZP_07481610.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu009]
gi|306973285|ref|ZP_07485946.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu010]
gi|307080993|ref|ZP_07490163.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu011]
gi|307085590|ref|ZP_07494703.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu012]
gi|313659830|ref|ZP_07816710.1| ribosome recycling factor [Mycobacterium tuberculosis KZN V2475]
gi|339632890|ref|YP_004724532.1| ribosome recycling factor [Mycobacterium africanum GM041182]
gi|340627873|ref|YP_004746325.1| ribosome recycling factor FRR [Mycobacterium canettii CIPT
140010059]
gi|375295299|ref|YP_005099566.1| ribosome recycling factor frr [Mycobacterium tuberculosis KZN 4207]
gi|383308633|ref|YP_005361444.1| ribosome recycling factor [Mycobacterium tuberculosis RGTB327]
gi|385992143|ref|YP_005910441.1| ribosome recycling factor [Mycobacterium tuberculosis CCDC5180]
gi|385995766|ref|YP_005914064.1| ribosome recycling factor [Mycobacterium tuberculosis CCDC5079]
gi|385999666|ref|YP_005917965.1| ribosome recycling factor [Mycobacterium tuberculosis CTRI-2]
gi|386005747|ref|YP_005924026.1| ribosome recycling factor [Mycobacterium tuberculosis RGTB423]
gi|392387508|ref|YP_005309137.1| frr [Mycobacterium tuberculosis UT205]
gi|392431506|ref|YP_006472550.1| ribosome recycling factor frr [Mycobacterium tuberculosis KZN 605]
gi|397674799|ref|YP_006516334.1| ribosome-recycling factor [Mycobacterium tuberculosis H37Rv]
gi|422813938|ref|ZP_16862307.1| ribosome recycling factor frr [Mycobacterium tuberculosis CDC1551A]
gi|424805221|ref|ZP_18230652.1| ribosome recycling factor frr [Mycobacterium tuberculosis W-148]
gi|433628001|ref|YP_007261630.1| Ribosome recycling factor Frr (ribosome releasing factor) (RRF)
[Mycobacterium canettii CIPT 140060008]
gi|433631977|ref|YP_007265605.1| Ribosome recycling factor Frr (ribosome releasing factor) (RRF)
[Mycobacterium canettii CIPT 140070010]
gi|433643072|ref|YP_007288831.1| Ribosome recycling factor Frr (ribosome releasing factor) (RRF)
[Mycobacterium canettii CIPT 140070008]
gi|54039295|sp|P66735.1|RRF_MYCBO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|54042003|sp|P66734.1|RRF_MYCTU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166230804|sp|A5U6N7.1|RRF_MYCTA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|61680226|pdb|1WQF|A Chain A, Crystal Structure Of Ribosome Recycling Factor From
Mycobacterium Tuberculosis
gi|61680227|pdb|1WQG|A Chain A, Crystal Structure Of Ribosome Recycling Factor From
Mycobacterium Tuberculosis
gi|61680228|pdb|1WQH|A Chain A, Crystal Structure Of Ribosome Recycling Factor From
Mycobacterium Tuberculosis
gi|13882725|gb|AAK47274.1| ribosome recycling factor [Mycobacterium tuberculosis CDC1551]
gi|31619653|emb|CAD96593.1| RIBOSOME RECYCLING FACTOR FRR (RIBOSOME RELEASING FACTOR) (RRF)
[Mycobacterium bovis AF2122/97]
gi|124602036|gb|EAY61046.1| ribosome recycling factor frr (ribosome releasing factor)
[Mycobacterium tuberculosis C]
gi|134151036|gb|EBA43081.1| ribosome recycling factor frr (ribosome releasing factor)
[Mycobacterium tuberculosis str. Haarlem]
gi|148506878|gb|ABQ74687.1| ribosome releasing factor [Mycobacterium tuberculosis H37Ra]
gi|148722598|gb|ABR07223.1| ribosome recycling factor frr (ribosome releasing factor)
[Mycobacterium tuberculosis F11]
gi|253319533|gb|ACT24136.1| ribosome recycling factor frr [Mycobacterium tuberculosis KZN 1435]
gi|289417356|gb|EFD14596.1| ribosome recycling factor [Mycobacterium tuberculosis T46]
gi|289421506|gb|EFD18707.1| ribosome recycling factor frr [Mycobacterium tuberculosis CPHL_A]
gi|289540018|gb|EFD44596.1| ribosome recycling factor frr [Mycobacterium tuberculosis K85]
gi|289544826|gb|EFD48474.1| ribosome recycling factor frr [Mycobacterium tuberculosis T17]
gi|289687209|gb|EFD54697.1| ribosome recycling factor frr [Mycobacterium tuberculosis 02_1987]
gi|289692134|gb|EFD59563.1| ribosome recycling factor frr [Mycobacterium tuberculosis T92]
gi|289695581|gb|EFD63010.1| ribosome recycling factor frr [Mycobacterium tuberculosis EAS054]
gi|289710565|gb|EFD74581.1| ribosome recycling factor frr (ribosome releasing factor)
[Mycobacterium tuberculosis GM 1503]
gi|289714567|gb|EFD78579.1| ribosome releasing factor [Mycobacterium tuberculosis T85]
gi|298496145|gb|EFI31439.1| ribosome recycling factor frr (ribosome releasing factor)
[Mycobacterium tuberculosis 94_M4241A]
gi|308214453|gb|EFO73852.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu001]
gi|308326125|gb|EFP14976.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu002]
gi|308329628|gb|EFP18479.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu003]
gi|308333767|gb|EFP22618.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu004]
gi|308337161|gb|EFP26012.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu005]
gi|308340971|gb|EFP29822.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu006]
gi|308344804|gb|EFP33655.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu007]
gi|308348752|gb|EFP37603.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu008]
gi|308353453|gb|EFP42304.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu009]
gi|308357318|gb|EFP46169.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu010]
gi|308361203|gb|EFP50054.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu011]
gi|308364898|gb|EFP53749.1| ribosome recycling factor frr [Mycobacterium tuberculosis SUMu012]
gi|323718492|gb|EGB27663.1| ribosome recycling factor frr [Mycobacterium tuberculosis CDC1551A]
gi|326904497|gb|EGE51430.1| ribosome recycling factor frr [Mycobacterium tuberculosis W-148]
gi|328457804|gb|AEB03227.1| ribosome recycling factor frr [Mycobacterium tuberculosis KZN 4207]
gi|339295720|gb|AEJ47831.1| ribosome recycling factor [Mycobacterium tuberculosis CCDC5079]
gi|339299336|gb|AEJ51446.1| ribosome recycling factor [Mycobacterium tuberculosis CCDC5180]
gi|339332246|emb|CCC27956.1| ribosome recycling factor FRR (ribosome releasing factor)
[Mycobacterium africanum GM041182]
gi|340006063|emb|CCC45234.1| ribosome recycling factor FRR (ribosome releasing factor) (RRF)
[Mycobacterium canettii CIPT 140010059]
gi|344220713|gb|AEN01344.1| ribosome recycling factor [Mycobacterium tuberculosis CTRI-2]
gi|378546059|emb|CCE38338.1| frr [Mycobacterium tuberculosis UT205]
gi|379029205|dbj|BAL66938.1| ribosome recycling factor [Mycobacterium tuberculosis str. Erdman =
ATCC 35801]
gi|380722586|gb|AFE17695.1| ribosome recycling factor [Mycobacterium tuberculosis RGTB327]
gi|380726235|gb|AFE14030.1| ribosome recycling factor [Mycobacterium tuberculosis RGTB423]
gi|392052915|gb|AFM48473.1| ribosome recycling factor frr [Mycobacterium tuberculosis KZN 605]
gi|395139704|gb|AFN50863.1| ribosome-recycling factor [Mycobacterium tuberculosis H37Rv]
gi|432155607|emb|CCK52858.1| Ribosome recycling factor Frr (ribosome releasing factor) (RRF)
[Mycobacterium canettii CIPT 140060008]
gi|432159620|emb|CCK56929.1| Ribosome recycling factor Frr (ribosome releasing factor) (RRF)
[Mycobacterium canettii CIPT 140070008]
gi|432163570|emb|CCK60988.1| Ribosome recycling factor Frr (ribosome releasing factor) (RRF)
[Mycobacterium canettii CIPT 140070010]
gi|440582359|emb|CCG12762.1| RIBOSOME RECYCLING FACTOR FRR (RIBOSOME RELEASING FACTOR) (RRF)
[Mycobacterium tuberculosis 7199-99]
gi|444896423|emb|CCP45684.1| Ribosome recycling factor Frr (ribosome releasing factor) (RRF)
[Mycobacterium tuberculosis H37Rv]
Length = 185
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L+ +RTGRA+PGM I ++ G P+ LA ++V +++ + I PY+
Sbjct: 13 MEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L+ +E AI +S LG+NP DG + A+P LT+E + + K E+ K S+R R
Sbjct: 73 NQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ + +K G + +D++ R EK++D+ T +YV D++ K KE E+ E
Sbjct: 133 RKAMEELHRIRKEGEA-GEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELLE 184
>gi|397905297|ref|ZP_10506160.1| Ribosome recycling factor [Caloramator australicus RC3]
gi|397161656|emb|CCJ33494.1| Ribosome recycling factor [Caloramator australicus RC3]
Length = 184
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 102/171 (59%), Gaps = 5/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ L EL L+ GRA+P MLD I V+ G ++ LA ++V + + L I P+D
Sbjct: 13 MKKSLELLKHELQSLKAGRANPAMLDKITVDYYGTPTHISSLATITVPEPRVLLIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
+ +K +E AI S LG+NP DG + IP LT+E + + KVV K ED K +SIR
Sbjct: 73 SVVKSIEKAIQKSDLGINPVADGNVVRLVIPELTEETRKNLVKVVKKHGEDAKVAIRSIR 132
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
R + + +KK G S +D++KR E EI ++T ++K D + +AKEKEI
Sbjct: 133 RDANEKIKALKKEGVS--EDEIKRAEDEIQKMTDNFIKEIDKLVEAKEKEI 181
>gi|422859700|ref|ZP_16906344.1| ribosome recycling factor [Streptococcus sanguinis SK330]
gi|327470583|gb|EGF16039.1| ribosome recycling factor [Streptococcus sanguinis SK330]
Length = 185
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D +++K++
Sbjct: 19 SLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK D++ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTANKEKELLE 184
>gi|331698487|ref|YP_004334726.1| ribosome-recycling factor [Pseudonocardia dioxanivorans CB1190]
gi|326953176|gb|AEA26873.1| Ribosome-recycling factor [Pseudonocardia dioxanivorans CB1190]
Length = 185
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +RTGRA+P M I+V+ G PLN LA VSV +++ + PYD
Sbjct: 13 MEKAVSVAKDDLASVRTGRATPSMFSRIMVDYYGAMTPLNQLASVSVPEARMAVVKPYDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + LE AI +S LG+NP DGQ + IP L++E + M KV ED + +IR R
Sbjct: 73 SQIGALEKAIRNSDLGVNPTNDGQIIRVVIPQLSEERRKEMVKVARGKGEDARVTIRSLR 132
Query: 121 QKALDMMK---KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ + K G + +D++ R EKE+ T KYV D++ K KE E+ E
Sbjct: 133 RKAMEELHRIVKEGEA-GEDEVGRAEKELQGTTDKYVHQVDELVKHKEAELLE 184
>gi|359772327|ref|ZP_09275758.1| ribosome-recycling factor [Gordonia effusa NBRC 100432]
gi|359310541|dbj|GAB18536.1| ribosome-recycling factor [Gordonia effusa NBRC 100432]
Length = 185
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +++ +RTGRA+P M + I +E G P+ +A ++ +++ + I PY+
Sbjct: 13 MEKAVSVARDDMSSIRTGRANPAMFNRINIEYYGAMTPIAQIASITAAEARLIVIKPYES 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TL ++E +I +S LG+NP DG + AIP LT+E + + K ED K SIR R
Sbjct: 73 STLNDIETSIRNSDLGVNPTNDGSLIRIAIPQLTEERRKELVKQAKGKGEDAKVSIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA+D +K+ +D++ R EKE+D+ T YV D++ K KE E+ E
Sbjct: 133 RKAVDELKRIQKDGEAGEDEVTRAEKELDKTTASYVAQVDELVKHKEGELLE 184
>gi|374307840|ref|YP_005054271.1| ribosome recycling factor [Filifactor alocis ATCC 35896]
gi|291166148|gb|EFE28194.1| ribosome recycling factor [Filifactor alocis ATCC 35896]
Length = 185
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I L EL+ +R GRA+P MLD I V+ G + PL +A +S D +T+ I P+D
Sbjct: 13 MTKTISVLKEELSVIRAGRANPAMLDKISVDYYGSQTPLKQMAGISSPDPRTIVIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LKE+E AI++S LG NP DG+ + IP LT+E + + K+V+KT E K ++R +R
Sbjct: 73 TALKEIEKAILASDLGFNPSNDGEVIRINIPQLTEERRKELVKLVSKTGEQSKVALRNAR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK L +D K+ E+ + KY K D + KE EI E
Sbjct: 133 RDTNDKIKKIEKDGELGEDDAKKALDEVQHIIDKYTKEIDSVVAKKEAEIME 184
>gi|228477911|ref|ZP_04062525.1| ribosome recycling factor [Streptococcus salivarius SK126]
gi|340398245|ref|YP_004727270.1| ribosome recycling factor (RRF) [Streptococcus salivarius CCHSS3]
gi|421451799|ref|ZP_15901160.1| Ribosome Recycling Factor (RRF) [Streptococcus salivarius K12]
gi|228250401|gb|EEK09641.1| ribosome recycling factor [Streptococcus salivarius SK126]
gi|338742238|emb|CCB92743.1| ribosome recycling factor (ribosome-releasing factor) (RRF)
[Streptococcus salivarius CCHSS3]
gi|400182230|gb|EJO16492.1| Ribosome Recycling Factor (RRF) [Streptococcus salivarius K12]
Length = 185
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE G PLN LA ++V +++ L I+P+D ++ ++
Sbjct: 19 SLAREFGSIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVLLISPFDKGSIADI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI S LG+NP DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERAINESDLGINPANDGSVVRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KK + +DQ+K LEK+I + T VK D + KEKE+
Sbjct: 139 AKKQEKDKEITEDQLKALEKDIQKATDDAVKKIDSMTAEKEKEL 182
>gi|27379969|ref|NP_771498.1| ribosome recycling factor [Bradyrhizobium japonicum USDA 110]
gi|34924950|sp|Q89KP6.1|RRF_BRAJA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|27353122|dbj|BAC50123.1| ribosome recycling factor [Bradyrhizobium japonicum USDA 110]
Length = 188
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +L EL LRTGRAS MLD + VE G MPLN LA VSV + + +S+ +D
Sbjct: 16 MQGAVQSLKHELGGLRTGRASASMLDPVQVEAYGSHMPLNQLATVSVPEPRLISVQVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AIV S LGL+P +GQ L IP L +E + + KV K +E K + R R
Sbjct: 76 SMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEAAKVAARHVR 135
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD++KK + +D KR E+ ++T + D + AKEKEI
Sbjct: 136 RDGLDVLKKLEKNHEMSEDDQKRHADEVQKVTDGTIAEIDQLLAAKEKEI 185
>gi|429730817|ref|ZP_19265463.1| ribosome recycling factor [Corynebacterium durum F0235]
gi|429147255|gb|EKX90285.1| ribosome recycling factor [Corynebacterium durum F0235]
Length = 185
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 97/160 (60%), Gaps = 2/160 (1%)
Query: 11 ELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAI 70
ELT +RTGRA+P M + ++ E G P+ +A +SV + + L I PY+ + + ++E AI
Sbjct: 23 ELTTIRTGRANPAMFNGVLAEYYGTMTPITQMATISVPEPRMLLIKPYEMSAMGDIENAI 82
Query: 71 VSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK- 129
+S LG+NP DGQ L IP LT+E + M K+ ED K +IR R+K ++ +K+
Sbjct: 83 RNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKLARSKGEDAKIAIRNVRRKGMEELKRI 142
Query: 130 -AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+D+++ EKE+D++T KYV D++ KEKE+
Sbjct: 143 QKDGEAGEDEVQAAEKELDKVTHKYVAQVDELVAKKEKEL 182
>gi|387761891|ref|YP_006068868.1| ribosome recycling factor [Streptococcus salivarius 57.I]
gi|418017264|ref|ZP_12656823.1| ribosome recycling factor [Streptococcus salivarius M18]
gi|339292658|gb|AEJ54005.1| ribosome recycling factor [Streptococcus salivarius 57.I]
gi|345527957|gb|EGX31265.1| ribosome recycling factor [Streptococcus salivarius M18]
Length = 185
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE G PLN LA ++V +++ L I+P+D ++ ++
Sbjct: 19 SLAREFGSIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVLLISPFDKGSIADI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI S LG+NP DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERAINESDLGINPANDGSVVRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KK + +DQ+K LEK+I + T VK D + KEKE+
Sbjct: 139 AKKQEKDKEITEDQLKALEKDIQKATDDAVKKIDSMTAEKEKEL 182
>gi|290957080|ref|YP_003488262.1| ribosome recycling factor [Streptomyces scabiei 87.22]
gi|260646606|emb|CBG69703.1| ribosome recycling factor [Streptomyces scabiei 87.22]
Length = 186
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 14 MEKAVVVAKDDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT+E + KV +ED K SIR R
Sbjct: 74 TALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVARSKAEDSKVSIRAVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 134 RKAKDAIDKLVKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 185
>gi|150021158|ref|YP_001306512.1| ribosome recycling factor [Thermosipho melanesiensis BI429]
gi|166231524|sp|A6LMH6.1|RRF_THEM4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|149793679|gb|ABR31127.1| ribosome recycling factor [Thermosipho melanesiensis BI429]
Length = 185
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 98/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ ++ EL KLRTGR SP +L+ I V+ GV P+N +A V+V + ++L I P++
Sbjct: 13 MKKSVNSIDEELKKLRTGRPSPALLEEIKVDYYGVPTPINQVATVNVTEERSLIIKPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L +E AI +S LGLNP DG + P T E Q K E K ++R R
Sbjct: 73 NLLNAVEKAIQASDLGLNPMNDGNVIRLVFPTPTTEQRQKWVKKAKDIVEHGKIAVRNIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++ L +K K + +D +RLEKEI LT KYV+ D + + KEKEI E
Sbjct: 133 REILKELKDLKKNGEISEDDERRLEKEIQNLTDKYVEELDKLFERKEKEIME 184
>gi|302537209|ref|ZP_07289551.1| ribosome recycling factor [Streptomyces sp. C]
gi|302446104|gb|EFL17920.1| ribosome recycling factor [Streptomyces sp. C]
Length = 185
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 99/176 (56%), Gaps = 10/176 (5%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA +V + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAITPINQLASFAVPEPRMAIVTPFDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG+ + P LT++ + KV +ED + SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGRIIRVTFPELTQDRRKEFIKVAKTKAEDSRVSIRSVR 132
Query: 121 QKALDMM------KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K+AG +D+++R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKDALDKLVKDKEAG----EDEVRRAEKELDDTTAKYVAQVDELLKHKESELLE 184
>gi|85703599|ref|ZP_01034703.1| ribosome recycling factor [Roseovarius sp. 217]
gi|85672527|gb|EAQ27384.1| ribosome recycling factor [Roseovarius sp. 217]
Length = 187
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 101/169 (59%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ AL E LRTGRAS ML+ I+V+ G K P+N + V+V + + ++IN +D
Sbjct: 16 MEGAMSALKTEFASLRTGRASASMLEPIMVDAYGQKTPINQVGTVNVPEPRMVTINVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI S LG+NP+++G ++ IP L ++ + + KV A+ +E + ++R R
Sbjct: 76 GLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEQRRKELTKVAAQYAEHARVAVRNVR 135
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA + +D K E E+ LT +++K D++ K+ EI
Sbjct: 136 RDGMDQIKKAKADGMSEDDQKFWEGEVQSLTDRFIKHVDEVLDGKQAEI 184
>gi|217967587|ref|YP_002353093.1| ribosome recycling factor [Dictyoglomus turgidum DSM 6724]
gi|217336686|gb|ACK42479.1| ribosome recycling factor [Dictyoglomus turgidum DSM 6724]
Length = 185
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ + +E +RTG+ S G+ D I V G MPLN +A + V + +T+ I P+D
Sbjct: 13 MKKAVEVVKKEFQNIRTGKPSVGIFDEIKVSYYGNMMPLNQVATLKVAEGRTVLIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI+ S LGL P+ DGQ + P LT+E + + K+V K +E + +IR R
Sbjct: 73 SIIGEIEKAILKSELGLTPQNDGQVIRVVFPPLTEERRKELVKIVHKEAETGRVAIRNIR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ L++ KK + +D+ RL++E+ ++T K+++ + + + KEKEI E
Sbjct: 133 RDYLEIFKKEKQEGKISEDEFYRLQEELQKITDKFIEEIEKLIEMKEKEIME 184
>gi|302342180|ref|YP_003806709.1| ribosome recycling factor [Desulfarculus baarsii DSM 2075]
gi|301638793|gb|ADK84115.1| ribosome recycling factor [Desulfarculus baarsii DSM 2075]
Length = 185
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL R+ +++RTGRA+P +LD + + G PLN +A +SV +++ + I P+DP
Sbjct: 13 MHKAIEALKRDFSRVRTGRATPTILDGVRADYYGQPTPLNQMAGISVPEARLIVIQPWDP 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI++S LGL P+ DG+ + P LT+E + + K+V K +E+ K ++R +R
Sbjct: 73 KSCELIEKAILASDLGLTPQSDGKVVRINFPPLTQERRKDLAKLVRKMAEEAKVAVRAAR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A +M+K K + +D R ++EI + T ++K D+ KEKEI E
Sbjct: 133 RDANEMLKEFKKEGEISEDDAFRGQEEIQKTTDDFIKKVDETLAEKEKEIME 184
>gi|256003336|ref|ZP_05428327.1| ribosome recycling factor [Clostridium thermocellum DSM 2360]
gi|281417721|ref|ZP_06248741.1| ribosome recycling factor [Clostridium thermocellum JW20]
gi|385778562|ref|YP_005687727.1| ribosome recycling factor [Clostridium thermocellum DSM 1313]
gi|419723610|ref|ZP_14250725.1| Ribosome-recycling factor [Clostridium thermocellum AD2]
gi|419724565|ref|ZP_14251627.1| Ribosome-recycling factor [Clostridium thermocellum YS]
gi|255992626|gb|EEU02717.1| ribosome recycling factor [Clostridium thermocellum DSM 2360]
gi|281409123|gb|EFB39381.1| ribosome recycling factor [Clostridium thermocellum JW20]
gi|316940242|gb|ADU74276.1| ribosome recycling factor [Clostridium thermocellum DSM 1313]
gi|380772112|gb|EIC05970.1| Ribosome-recycling factor [Clostridium thermocellum YS]
gi|380780292|gb|EIC09975.1| Ribosome-recycling factor [Clostridium thermocellum AD2]
Length = 183
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 96/172 (55%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + L EL +R GRA+ +LD I V+ GV P+N L +SV + + + I P+D
Sbjct: 11 MKKTVSVLKDELNTVRAGRANAAILDRITVDYYGVPTPINQLGTISVPEPRVIVIQPWDA 70
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LKE+E I S +G+NP DG+ + P LT+E + + K+ K ED K +IR R
Sbjct: 71 QILKEIEKEIQKSDIGINPNNDGKVIRLVFPPLTEERRKELTKLAKKYGEDAKVAIRSIR 130
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ ++ MK K + +D +K EK+I LT KY+ D + + KEKEI E
Sbjct: 131 RDGIEKMKAMKKNGEITEDDLKSAEKDIQNLTDKYIAEIDKLIEIKEKEILE 182
>gi|371778505|ref|ZP_09484827.1| Ribosome-recycling factor [Anaerophaga sp. HS1]
Length = 187
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 103/169 (60%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I L REL K+R G+A P +L+ ++VE G PLN +A ++ D +T++I P++
Sbjct: 16 MQKTINHLDRELGKIRAGKADPRLLEGVLVEYYGSMTPLNQVASINTPDPRTIAIQPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+++ LGLNP +G + IP LT+E Q + K V K E+ + SIR R
Sbjct: 76 GMIATIEKAIMNANLGLNPDNNGDVIRINIPPLTEERRQNLVKQVKKEGEEARISIRSIR 135
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A + +KK + LP+D K E+E+ +LT KY K+ D + + KEK+I
Sbjct: 136 RDANEELKKLKKNGLPEDIEKNAEEEVQKLTDKYAKTIDSMLEKKEKDI 184
>gi|359806687|ref|NP_001241288.1| uncharacterized protein LOC100794560 [Glycine max]
gi|255638439|gb|ACU19529.1| unknown [Glycine max]
Length = 261
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I + + +RTGRA+P MLD I VE G + L +A +S D+ +L + PYD
Sbjct: 89 MDRTIDNVRTNFSSIRTGRANPSMLDKIQVEYYGSPVSLKSIAQISTPDASSLLVQPYDK 148
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
++LK +E AIVSS LG+ P DG+ + +IP LT + + + K+VAK +E+ K ++IR
Sbjct: 149 SSLKAIEKAIVSSDLGMTPNNDGELIRLSIPQLTSDRRKELSKIVAKQAEEGKVALRNIR 208
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
R KA D ++K L +D +K L ++ +LT +Y+K D I K KEKE+
Sbjct: 209 RDALKAYDKLEKE-KKLSEDNVKDLSSDLQKLTDEYMKKVDTIFKQKEKEL 258
>gi|410727072|ref|ZP_11365295.1| ribosome recycling factor [Clostridium sp. Maddingley MBC34-26]
gi|410599407|gb|EKQ53960.1| ribosome recycling factor [Clostridium sp. Maddingley MBC34-26]
Length = 185
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I L +L+ ++ GRA+P MLD I VE G PL+ +A VS + + L I P++
Sbjct: 13 MKKTISVLQSDLSTMKAGRANPTMLDRIQVEYYGSMCPLSQVANVSAPEPRVLMITPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LKE+E AI+ S LGLNP DG + IP LT+E +A+ K V KT E+ K ++R R
Sbjct: 73 PLLKEIEKAILKSDLGLNPSNDGSIIRLVIPELTEETRKALVKNVKKTGEEAKVAVRSIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K K + L +DQ+K+ E E+ + T VK D I AKEKE+
Sbjct: 133 KTANDKIKALKKDADLSEDQIKKAEDEVQKKTDAVVKEIDSIIAAKEKEV 182
>gi|206900181|ref|YP_002250924.1| ribosome recycling factor [Dictyoglomus thermophilum H-6-12]
gi|206739284|gb|ACI18342.1| ribosome recycling factor [Dictyoglomus thermophilum H-6-12]
Length = 185
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ + +E +RTG+ S G+ D I + G MPLN +A + + + +T+ I P+D
Sbjct: 13 MKKAVEVVKKEFQGIRTGKPSIGIFDEIKISYYGNMMPLNQVATLKIAEGRTVLIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI+ S LGL P+ DGQ + P LT+E + + KVV K +E+ + +IR R
Sbjct: 73 SIIGEIEKAILKSELGLTPQNDGQVIRVVFPPLTEERRKELVKVVHKEAENGRVAIRNIR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ L++ KK + +D+ RL++E+ ++T K+++ + + + KEKEI E
Sbjct: 133 RDYLEIFKKEKQEGKISEDEFYRLQEELQKMTDKFIEEIEKLIEMKEKEIME 184
>gi|154248356|ref|YP_001419314.1| ribosome recycling factor [Xanthobacter autotrophicus Py2]
gi|238686805|sp|A7INR3.1|RRF_XANP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|154162441|gb|ABS69657.1| ribosome recycling factor [Xanthobacter autotrophicus Py2]
Length = 187
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 95/170 (55%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ L EL LRTGRAS +LD I +E G +MPLN +A VSV +++ LS+ +D
Sbjct: 15 MQGAVGVLRDELGGLRTGRASASLLDPITIEAYGARMPLNQVATVSVPEARLLSVQVWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI S LGLNP +GQ L IP L +E Q + KV K +E K ++R R
Sbjct: 75 GMVSAVEKAIRDSNLGLNPNTEGQVLRLRIPELNQERRQELVKVAHKYAEAAKVAVRHVR 134
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KK + D + RL K++ + T + + D KEKEI
Sbjct: 135 RDGMDHLKKVEKDGEMSSDDLDRLSKDVQKATDETIAEIDQTLAQKEKEI 184
>gi|404404644|ref|ZP_10996228.1| ribosome recycling factor [Alistipes sp. JC136]
Length = 185
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 106/169 (62%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L EL +R G+ASP L+ ++V+ G ++P++ A V+V D+KT+ I P+D
Sbjct: 14 MQKAIDHLEEELLNVRAGKASPNALNGVMVDYFGSQVPVSGTASVTVPDAKTILIQPWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L+ +E AI+ S +GL P +G+++ IP LT+E + + K V +E + S+R +R
Sbjct: 74 NMLRPIEKAIIDSNIGLTPSNNGEQIRLTIPPLTEERRKELVKQVRSDAETARISLRNAR 133
Query: 121 QKALDMMKKAG-SSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A++ KKA +P+D+ K E +I +L +K+ KS +++ KEKEI
Sbjct: 134 RDAVEAFKKAQKEGMPEDESKDGETQIQKLLEKFTKSLEEVLSKKEKEI 182
>gi|16126163|ref|NP_420727.1| ribosome recycling factor [Caulobacter crescentus CB15]
gi|221234934|ref|YP_002517370.1| ribosome recycling factor [Caulobacter crescentus NA1000]
gi|22001950|sp|Q9A706.1|RRF_CAUCR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809500|sp|B8GWS0.1|RRF_CAUCN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|13423373|gb|AAK23895.1| ribosome recycling factor [Caulobacter crescentus CB15]
gi|220964106|gb|ACL95462.1| ribosome Recycling factor (RRF) [Caulobacter crescentus NA1000]
Length = 188
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ AL E LRTGRAS +LD ++VE G PLN +A VSV + + ++++ +D
Sbjct: 16 MDKAVSALKEEFGSLRTGRASASLLDQVMVEAYGSTTPLNAVASVSVPEPRQINVSVWDR 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI +S LGLNP V+GQ L IP LT+E + + K+ K +E K ++R R
Sbjct: 76 GVVVSVEKAIRASGLGLNPVVEGQNLRIPIPPLTEERRRDLQKIAGKYAEQQKIAVRNVR 135
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KKA ++ +D+ K++E E+ ++T +K D+ K KE EI
Sbjct: 136 RDANDDLKKAEKDGAIAEDERKKMETEVQKMTDDAIKRIDEALKTKEHEI 185
>gi|170749846|ref|YP_001756106.1| ribosome recycling factor [Methylobacterium radiotolerans JCM 2831]
gi|190360252|sp|B1LTQ4.1|RRF_METRJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|170656368|gb|ACB25423.1| ribosome recycling factor [Methylobacterium radiotolerans JCM 2831]
Length = 187
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +LS++L LRTGRA+P +LD I V+ G MP+ +A VSV + + LSI+ +D
Sbjct: 15 MQGAVASLSKDLGSLRTGRATPSLLDPIQVDAYGSMMPMAQVATVSVPEPRLLSISVWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI S LGLNP+ +GQ + IP + ++ + M KV K +E+ + ++R R
Sbjct: 75 SMVTAVEKAIRESDLGLNPQTEGQTIRLRIPEMNEQRRKEMVKVAHKYTEEARVAVRHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD +KK S++ +D KR ++ + T +Y+ D + +KEKEI
Sbjct: 135 RDGLDHLKKLLKDSAISEDDEKRQATDVQKATDQYIAEIDGVLASKEKEI 184
>gi|326776287|ref|ZP_08235552.1| Ribosome-recycling factor [Streptomyces griseus XylebKG-1]
gi|326656620|gb|EGE41466.1| Ribosome-recycling factor [Streptomyces griseus XylebKG-1]
Length = 185
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV +++ + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEARMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT++ + KV +ED K SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEYIKVAKTKAEDSKISIRSIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K S +D+++R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKETLDKLVKDKES-GEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|312864198|ref|ZP_07724432.1| ribosome recycling factor [Streptococcus vestibularis F0396]
gi|322517322|ref|ZP_08070197.1| ribosome recycling factor [Streptococcus vestibularis ATCC 49124]
gi|311100199|gb|EFQ58408.1| ribosome recycling factor [Streptococcus vestibularis F0396]
gi|322124019|gb|EFX95572.1| ribosome recycling factor [Streptococcus vestibularis ATCC 49124]
Length = 185
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE G PLN LA ++V +++ L I+P+D ++ ++
Sbjct: 19 SLAREFGAIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVLLISPFDKGSIADI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI S LG+NP DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERAINESDLGINPANDGSVVRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KK + +DQ+K LEK+I + T VK D + KEKE+
Sbjct: 139 AKKQEKDKEITEDQLKALEKDIQKATDDAVKKIDSMTAEKEKEL 182
>gi|402849001|ref|ZP_10897245.1| Ribosome recycling factor [Rhodovulum sp. PH10]
gi|402500720|gb|EJW12388.1| Ribosome recycling factor [Rhodovulum sp. PH10]
Length = 187
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L +EL LRTGRAS +LDHI E G MPLN LA ++V + + LS+ +D
Sbjct: 15 MQGAIGVLKQELGGLRTGRASTALLDHIQAEVYGSNMPLNQLASITVPEPRLLSVQVWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AIV++ +GL P +GQ + +P L +E + + KV K +E + ++R R
Sbjct: 75 SAVHAVEKAIVAANVGLTPNTEGQVIRLRVPELNQERRKELVKVAHKYAEGARVAVRHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D++KK + KD + R+ EI + T + + D I AKEKEI
Sbjct: 135 RDGMDLIKKLEKDGTASKDDVGRMGDEIQKATDQTITEIDQILAAKEKEI 184
>gi|148265750|ref|YP_001232456.1| ribosome recycling factor [Geobacter uraniireducens Rf4]
gi|189044056|sp|A5G7W5.1|RRF_GEOUR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|146399250|gb|ABQ27883.1| ribosome recycling factor [Geobacter uraniireducens Rf4]
Length = 185
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I AL +E ++RTGRAS G+LD I V+ G P+N +A ++V + +T+++ P+D
Sbjct: 13 MDKTIDALRKEYQRVRTGRASTGLLDEIKVDFYGTPSPINQVATLAVPEPRTITLQPWDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+++ LGL P DG+ + IP LT+E + + K + K +ED K ++R R
Sbjct: 73 KMIPVIEKAIMNANLGLTPANDGKVIRLNIPPLTEERRKDIVKQLKKLAEDAKVAVRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D +KK + +D +KR EKE+ ++T +V D++ KEKE+ E
Sbjct: 133 RDAIDELKKQEKDKKISEDDLKRAEKEVQDVTNSHVAKIDEVFVHKEKEVME 184
>gi|182435653|ref|YP_001823372.1| ribosome recycling factor [Streptomyces griseus subsp. griseus NBRC
13350]
gi|178464169|dbj|BAG18689.1| putative ribosome recycling factor [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 186
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV +++ + P+D
Sbjct: 14 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEARMAVVTPFDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT++ + KV +ED K SIR R
Sbjct: 74 SALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEYIKVAKTKAEDSKISIRSIR 133
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K S +D+++R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 134 RKAKETLDKLVKDKES-GEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLE 185
>gi|334361384|gb|AEG78285.1| ribosome recycling factor [Streptomyces nashvillensis]
Length = 185
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAITPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV +ED K SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKGKAEDSKISIRSVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA +D + K G + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKETIDKLVKDG-EVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|322372351|ref|ZP_08046887.1| ribosome recycling factor [Streptococcus sp. C150]
gi|419707229|ref|ZP_14234722.1| Ribosome-recycling factor (RRF) (Ribosome-releasing factor)
[Streptococcus salivarius PS4]
gi|321277393|gb|EFX54462.1| ribosome recycling factor [Streptococcus sp. C150]
gi|383283001|gb|EIC80972.1| Ribosome-recycling factor (RRF) (Ribosome-releasing factor)
[Streptococcus salivarius PS4]
Length = 185
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE G PLN LA ++V +++ L I+P+D ++ ++
Sbjct: 19 SLAREFGSIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVLLISPFDKGSIADI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI S LG+NP DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERAINESDLGINPANDGSVVRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KK + +DQ+K LEK+I + T VK D + KEKE+
Sbjct: 139 AKKQEKDKEITEDQLKGLEKDIQKATDDAVKKIDSMTAEKEKEL 182
>gi|417986958|ref|ZP_12627520.1| ribosome recycling factor [Lactobacillus casei 32G]
gi|410524022|gb|EKP98939.1| ribosome recycling factor [Lactobacillus casei 32G]
Length = 218
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L REL +R GRA+ +L+ I VE G PLN +A +++ + + L ++PYD ++LK +
Sbjct: 19 SLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIPEPRVLQVSPYDKSSLKNI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+NP DG + IP LT E + + K V K SE K ++R R++ LD
Sbjct: 79 ETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKYSESAKIAVRNIRREGLDK 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+K+ + +D + RLEK++ + T K D+I AKEK++
Sbjct: 139 LKRQEKDGDITEDDLHRLEKDMQKATDDATKRIDEIAAAKEKKL 182
>gi|15900824|ref|NP_345428.1| ribosome recycling factor [Streptococcus pneumoniae TIGR4]
gi|111658056|ref|ZP_01408758.1| hypothetical protein SpneT_02000789 [Streptococcus pneumoniae
TIGR4]
gi|182683889|ref|YP_001835636.1| ribosome recycling factor [Streptococcus pneumoniae CGSP14]
gi|303254412|ref|ZP_07340518.1| ribosome recycling factor [Streptococcus pneumoniae BS455]
gi|303259855|ref|ZP_07345830.1| ribosome releasing factor [Streptococcus pneumoniae SP-BS293]
gi|303262269|ref|ZP_07348213.1| ribosome releasing factor [Streptococcus pneumoniae SP14-BS292]
gi|303264691|ref|ZP_07350609.1| ribosome releasing factor [Streptococcus pneumoniae BS397]
gi|303267220|ref|ZP_07353085.1| ribosome releasing factor [Streptococcus pneumoniae BS457]
gi|303269506|ref|ZP_07355271.1| ribosome releasing factor [Streptococcus pneumoniae BS458]
gi|418139293|ref|ZP_12776123.1| ribosome recycling factor [Streptococcus pneumoniae GA13338]
gi|418180400|ref|ZP_12816971.1| ribosome recycling factor [Streptococcus pneumoniae GA41688]
gi|418199980|ref|ZP_12836425.1| ribosome recycling factor [Streptococcus pneumoniae GA47976]
gi|418220997|ref|ZP_12847651.1| ribosome recycling factor [Streptococcus pneumoniae GA47751]
gi|419523242|ref|ZP_14062822.1| ribosome recycling factor [Streptococcus pneumoniae GA13723]
gi|421206392|ref|ZP_15663453.1| ribosome recycling factor [Streptococcus pneumoniae 2090008]
gi|421229587|ref|ZP_15686260.1| ribosome recycling factor [Streptococcus pneumoniae 2061376]
gi|421247205|ref|ZP_15703692.1| ribosome recycling factor [Streptococcus pneumoniae 2082170]
gi|421268147|ref|ZP_15719018.1| ribosome recycling factor [Streptococcus pneumoniae SPAR95]
gi|421291816|ref|ZP_15742554.1| ribosome recycling factor [Streptococcus pneumoniae GA56348]
gi|421296063|ref|ZP_15746775.1| ribosome recycling factor [Streptococcus pneumoniae GA58581]
gi|421311686|ref|ZP_15762293.1| ribosome recycling factor [Streptococcus pneumoniae GA58981]
gi|22001947|sp|Q97R82.1|RRF_STRPN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|238691154|sp|B2IPA0.1|RRF_STRPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|14972420|gb|AAK75068.1| ribosome recycling factor [Streptococcus pneumoniae TIGR4]
gi|182629223|gb|ACB90171.1| ribosome releasing factor [Streptococcus pneumoniae CGSP14]
gi|302598579|gb|EFL65619.1| ribosome recycling factor [Streptococcus pneumoniae BS455]
gi|302636592|gb|EFL67083.1| ribosome releasing factor [Streptococcus pneumoniae SP14-BS292]
gi|302639060|gb|EFL69520.1| ribosome releasing factor [Streptococcus pneumoniae SP-BS293]
gi|302640942|gb|EFL71324.1| ribosome releasing factor [Streptococcus pneumoniae BS458]
gi|302643229|gb|EFL73511.1| ribosome releasing factor [Streptococcus pneumoniae BS457]
gi|302645778|gb|EFL76007.1| ribosome releasing factor [Streptococcus pneumoniae BS397]
gi|353846012|gb|EHE26050.1| ribosome recycling factor [Streptococcus pneumoniae GA41688]
gi|353865027|gb|EHE44936.1| ribosome recycling factor [Streptococcus pneumoniae GA47976]
gi|353875920|gb|EHE55770.1| ribosome recycling factor [Streptococcus pneumoniae GA47751]
gi|353905536|gb|EHE80959.1| ribosome recycling factor [Streptococcus pneumoniae GA13338]
gi|379557973|gb|EHZ23010.1| ribosome recycling factor [Streptococcus pneumoniae GA13723]
gi|395576306|gb|EJG36862.1| ribosome recycling factor [Streptococcus pneumoniae 2090008]
gi|395596399|gb|EJG56617.1| ribosome recycling factor [Streptococcus pneumoniae 2061376]
gi|395614841|gb|EJG74859.1| ribosome recycling factor [Streptococcus pneumoniae 2082170]
gi|395871063|gb|EJG82174.1| ribosome recycling factor [Streptococcus pneumoniae SPAR95]
gi|395894033|gb|EJH05014.1| ribosome recycling factor [Streptococcus pneumoniae GA56348]
gi|395897276|gb|EJH08240.1| ribosome recycling factor [Streptococcus pneumoniae GA58581]
gi|395912264|gb|EJH23127.1| ribosome recycling factor [Streptococcus pneumoniae GA58981]
Length = 185
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD + VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S +G+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASDIGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKREKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|440694117|ref|ZP_20876755.1| ribosome recycling factor [Streptomyces turgidiscabies Car8]
gi|440283887|gb|ELP71087.1| ribosome recycling factor [Streptomyces turgidiscabies Car8]
Length = 185
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ +E AI S LG+NP DG + P LT+E + KV +ED K SIR R
Sbjct: 73 TAMRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTQERRKDYIKVARTKAEDSKISIRSIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKDTIDKFVKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|313888244|ref|ZP_07821915.1| ribosome recycling factor [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845647|gb|EFR33037.1| ribosome recycling factor [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 185
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I +L+ L +R GRA+ +LD I V+ G + PLN +A +S +++ L+I P+D
Sbjct: 13 MSKSIDSLTESLQSIRAGRANTSLLDRIYVDYYGQQSPLNQVASLSAPEARLLAIQPWDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ E+E AI S LG+ P DG+ + IP LT+E + + K+V K +E+ K SIR R
Sbjct: 73 TLIPEIEKAIQKSDLGITPSNDGKIIRLVIPQLTEERRKDLTKLVGKYAEEAKVSIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A++ +KKA + +D K E++I +LT KY+K D + KEKE+ E
Sbjct: 133 RDAMEDIKKAEKAKEISEDDRKTYEEDIQKLTDKYIKDVDSVAADKEKELME 184
>gi|84686917|ref|ZP_01014801.1| ribosome recycling factor [Maritimibacter alkaliphilus HTCC2654]
gi|84665114|gb|EAQ11594.1| ribosome recycling factor [Rhodobacterales bacterium HTCC2654]
Length = 188
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI AL EL LRTGRAS ML+ + VE G + P+N + V+V + + ++IN +D
Sbjct: 17 MEGAIGALRTELASLRTGRASAAMLEPVHVEAYGQRTPINQVGTVNVPEPRMVTINVWDK 76
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI+ S LG+NP+ +G ++ IP L +E + + +V A+ +E + +IR R
Sbjct: 77 SLVNAVEKAIMESGLGINPQTNGTIIMLPIPELNEERRKELARVAAQYAESARVAIRNVR 136
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ ++ +KKA + + +D K E+ ELT KY+ + D + K++EI
Sbjct: 137 RDGMEQLKKAKAAGMSEDDNKIWHDEVQELTDKYIGNVDKTLETKQEEI 185
>gi|83589883|ref|YP_429892.1| ribosome recycling factor [Moorella thermoacetica ATCC 39073]
gi|123524654|sp|Q2RJP0.1|RRF_MOOTA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|83572797|gb|ABC19349.1| ribosome recycling factor [Moorella thermoacetica ATCC 39073]
Length = 185
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ L REL LR GRA+P +L+ ++V G P+N LA VS +++ L I P+D
Sbjct: 13 MKKAVEGLRRELASLRAGRANPALLEKVLVSYYGTPTPVNQLATVSSPEARLLVIQPWDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L E+E AI+ S LGL P DG + IP LT+E + KV K +E+ + +R +R
Sbjct: 73 NILPEIEKAILKSDLGLTPSSDGTVIRITIPQLTEERRSELVKVARKKAEEFRVMVRNAR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A D +K + +D++KR ++++ + T Y++ D I KE EI E
Sbjct: 133 REANDKLKASEKNKEASEDEVKRAQEKVQKTTDNYIQIIDKILATKEAEIME 184
>gi|325673456|ref|ZP_08153147.1| ribosome recycling factor [Rhodococcus equi ATCC 33707]
gi|325555477|gb|EGD25148.1| ribosome recycling factor [Rhodococcus equi ATCC 33707]
Length = 185
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI +L +RTGRA+PGM + ++VE G P+ LA ++V +++ + I PY+
Sbjct: 13 MEKAITVAKDDLGSIRTGRANPGMFNRVVVEYYGSMTPITQLASINVPEARMVIIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI +S LG+NP DG + ++P LT+E + K ED K +IR R
Sbjct: 73 SQLGPIENAIRNSDLGVNPSNDGSIIRISVPQLTEERRREFVKQAKSKGEDAKVAIRNVR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K +D + +K G + +D++ R EKE+D+ T +YV D++ K KE E+ E
Sbjct: 133 RKTMDELSRIQKDGEA-GEDEVGRAEKELDKTTSRYVSQIDELVKHKEAELME 184
>gi|225011201|ref|ZP_03701661.1| ribosome recycling factor [Flavobacteria bacterium MS024-3C]
gi|225004662|gb|EEG42624.1| ribosome recycling factor [Flavobacteria bacterium MS024-3C]
Length = 184
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 99/168 (58%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ L + K+R G+ASP ML + V+ G PL+ +A V+ D++T+S+ P++
Sbjct: 16 MDRAMAHLEKSFAKIRAGKASPIMLSTVKVDYYGSPTPLSQVANVNTTDARTISVQPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L+E+E AI ++ LG NP +G +I +P LT+E + + K +ED K +R +R
Sbjct: 76 NMLQEIEKAITNANLGFNPMNNGDLIIINVPPLTEERRRDLVKQAKAEAEDAKIGVRNAR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q+A +K G+ LP+D K E I ELT +Y K +++ KE EI
Sbjct: 136 QEANKDIK--GTDLPEDTAKDAEASIQELTNQYSKKIEELLTVKEAEI 181
>gi|422870480|ref|ZP_16916973.1| ribosome recycling factor [Streptococcus sanguinis SK1087]
gi|328946695|gb|EGG40833.1| ribosome recycling factor [Streptococcus sanguinis SK1087]
Length = 185
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D +++K++
Sbjct: 19 SLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDD 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK D++ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTANKEKELLE 184
>gi|297202666|ref|ZP_06920063.1| ribosome recycling factor [Streptomyces sviceus ATCC 29083]
gi|197713241|gb|EDY57275.1| ribosome recycling factor [Streptomyces sviceus ATCC 29083]
Length = 185
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAPTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT+E + KV +ED K SIR R
Sbjct: 73 TALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVARGKAEDSKVSIRSVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K + +D+ +R EK++D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKDAIDKLVKDGEVGEDEGRRAEKDLDDATHKYVAQVDELLKHKEAELLE 184
>gi|348027044|ref|YP_004766849.1| ribosome-recycling factor [Megasphaera elsdenii DSM 20460]
gi|341823098|emb|CCC74022.1| ribosome-recycling factor [Megasphaera elsdenii DSM 20460]
Length = 186
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I AL REL+ +RTGRAS +LD I V+ G P+ +A VSV + + ++I P++P
Sbjct: 14 MDKTIEALKRELSSIRTGRASTSLLDRITVDYYGTPTPVKQVANVSVPEPRMITIAPWEP 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+E AI+ S LGLNP DG+ + IP LT+E + + K V+K +ED K IR R
Sbjct: 74 KMLGEIEKAILKSDLGLNPNNDGKIIRLEIPQLTEERRKELSKKVSKIAEDSKVVIRNIR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A + +KK + +D K ++ I +LT K +K+ D+I KEKE+
Sbjct: 134 RDANETIKKMEKKKEVTEDDSKEGQENIQKLTDKKIKAIDEIKAKKEKEV 183
>gi|315641203|ref|ZP_07896280.1| ribosome recycling factor [Enterococcus italicus DSM 15952]
gi|315482970|gb|EFU73489.1| ribosome recycling factor [Enterococcus italicus DSM 15952]
Length = 185
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME L REL ++R GRA+ +LD I V G P+N LA +++ +++ L I P+D
Sbjct: 13 MEKTAENLQRELGQIRAGRANASLLDRISVVYYGAPTPINQLASITIPEARILMITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TLK++E AI++S +G+NP DG + IP LT+E + + K V K +E K +IR +R
Sbjct: 73 STLKDIEKAILASDIGINPTSDGNVIRLVIPQLTEERRKELVKEVKKETESAKIAIRNAR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ +D KK + +D ++ EK I ELT +K D I +KE+E+ E
Sbjct: 133 RDGMDSYKKQQKAGDITEDDLRTSEKTIQELTDASIKELDKIAASKEEELLE 184
>gi|339624049|ref|ZP_08659838.1| ribosome Recycling Factor, RRF [Fructobacillus fructosus KCTC 3544]
Length = 181
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 103/168 (61%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL REL ++RTGRA+P +LD + VE G +PLN +A +SV +++ L I P+D
Sbjct: 12 MKGAQDALRRELGEIRTGRANPRILDRVQVEYYGAMVPLNQVASISVPEARLLLITPFDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ + AI S LGLNP DG + AIP +T+E + + K V +E K ++R R
Sbjct: 72 GALEAIVTAINVSDLGLNPASDGNIVRLAIPQMTEERRKELVKEVKAEAEKSKVAVRNVR 131
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK L +DQ+ E ++ +LT +K+ D+I + KEKE+
Sbjct: 132 RDAMDAIKK-DKELTEDQVHESEDKVQKLTDDNIKAIDEIAEDKEKEL 178
>gi|162454452|ref|YP_001616819.1| hypothetical protein sce6172 [Sorangium cellulosum So ce56]
gi|189044078|sp|A9GGK7.1|RRF_SORC5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|161165034|emb|CAN96339.1| rrf [Sorangium cellulosum So ce56]
Length = 185
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
+E AI AL R+L K+RTGRA+ MLD I V+ GV P+ +A VSV + + +S+ P++
Sbjct: 13 IEKAIEALRRDLAKVRTGRANAAMLDGIRVDYYGVPTPIVQMATVSVPEPRLISVKPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N +K +E AI S LGLNP+VD + IP LT+E + M K+ K ED K +IR+ R
Sbjct: 73 NQVKAIEKAIRESDLGLNPQVDADLIRLPIPPLTEERRREMVKLTKKNGEDCKVAIRKHR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A +D ++K G + D+ R +K++D++ + K D + KEK+I
Sbjct: 133 RDANEMIDSLEKDG-DVSGDEADRAKKKVDDVVAEGTKLVDTVIAGKEKDI 182
>gi|365863765|ref|ZP_09403470.1| ribosome recycling factor [Streptomyces sp. W007]
gi|364006804|gb|EHM27839.1| ribosome recycling factor [Streptomyces sp. W007]
Length = 186
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV +++ + P+D
Sbjct: 14 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEARMAVVTPFDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT++ + KV +ED K SIR R
Sbjct: 74 TALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEYIKVAKTKAEDSKISIRSIR 133
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K S +D+++R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 134 RKAKETLDKLVKDKES-GEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLE 185
>gi|338974298|ref|ZP_08629659.1| ribosome recycling factor [Bradyrhizobiaceae bacterium SG-6C]
gi|414166664|ref|ZP_11422896.1| ribosome-recycling factor [Afipia clevelandensis ATCC 49720]
gi|338232385|gb|EGP07514.1| ribosome recycling factor [Bradyrhizobiaceae bacterium SG-6C]
gi|410892508|gb|EKS40300.1| ribosome-recycling factor [Afipia clevelandensis ATCC 49720]
Length = 187
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ AL EL LRTGRA+ M++ + VE G MPLN +A VSV + + LS+ +D
Sbjct: 15 MEGALTALKHELGGLRTGRAAISMVEPVQVEAYGSHMPLNQVATVSVPEPRMLSVQVWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AIV+S LGL+P +GQ + IP L +E + + KV K +E + ++R R
Sbjct: 75 SMVKAVETAIVNSNLGLSPATEGQVIRLRIPELNEERRKELVKVAHKYTEAARVAVRHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LDM+KK + +D KRL E+ + T + D KEKEI
Sbjct: 135 RDGLDMLKKLEKDHQISEDDEKRLSNEVQKATDAAIAEVDKALATKEKEI 184
>gi|345002342|ref|YP_004805196.1| ribosome recycling factor [Streptomyces sp. SirexAA-E]
gi|344317968|gb|AEN12656.1| ribosome recycling factor [Streptomyces sp. SirexAA-E]
Length = 185
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT++ + KV +ED K SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEFIKVAKTKAEDSKISIRSVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K S +D+++R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKESLDKLVKDKES-GEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|282882018|ref|ZP_06290659.1| ribosome recycling factor [Peptoniphilus lacrimalis 315-B]
gi|300813724|ref|ZP_07094044.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|281298048|gb|EFA90503.1| ribosome recycling factor [Peptoniphilus lacrimalis 315-B]
gi|300512181|gb|EFK39361.1| ribosome recycling factor [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 185
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 4 AIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTL 63
I +L + +R GRA+ +LD I V+ G + P+N +A +S + + L I+P+DP +
Sbjct: 16 TISSLKEDFQSIRAGRANTSLLDKITVDYYGQQSPINQVAGLSAPEPRMLMISPWDPKLI 75
Query: 64 KELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKA 123
E+E +I+ S LG+ P DG+ + IP LT+E + + KVV K SE K +IR R+ A
Sbjct: 76 PEIEKSILKSDLGITPSNDGKVIRLIIPQLTEERRKDLTKVVGKNSEAAKIAIRNIRRDA 135
Query: 124 LDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+D +KKA S + +D K E+EI +LT KY++ D I KAKE E+ E
Sbjct: 136 MDEIKKAEKSKEITEDDRKSNEEEIQKLTDKYIEEIDKITKAKEIELME 184
>gi|259046749|ref|ZP_05737150.1| ribosome recycling factor [Granulicatella adiacens ATCC 49175]
gi|259036645|gb|EEW37900.1| ribosome recycling factor [Granulicatella adiacens ATCC 49175]
Length = 186
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
AL REL +R GRA+ +LD + VE G P+N LA ++V +++ L I PYD ++L ++
Sbjct: 20 ALQRELGSIRAGRANASLLDRLEVEYYGALTPVNQLASITVPEARMLLITPYDKSSLNDI 79
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI+ S +G+ P DG + IP LT+E + + K V K +E+ K S+R R+ A+D
Sbjct: 80 ERAILMSDIGITPTSDGSVIRLIIPQLTEERRKELAKQVGKEAENAKVSVRNIRRDAIDQ 139
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KKA + +D++ LEK+I ++T VK+ D + KEKE+ E
Sbjct: 140 AKKAEKAKEITEDELHTLEKDIQKVTDDSVKNIDKLAATKEKELLE 185
>gi|254382047|ref|ZP_04997409.1| ribosome recycling factor [Streptomyces sp. Mg1]
gi|194340954|gb|EDX21920.1| ribosome recycling factor [Streptomyces sp. Mg1]
Length = 185
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 99/176 (56%), Gaps = 10/176 (5%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA +V + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAITPINQLASFAVPEPRMAIVTPFDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG+ + P LT++ + KV +ED K SIR R
Sbjct: 73 SALRNIEQAIRDSDLGVNPSNDGRIIRVTFPELTQDRRKEYIKVARTKAEDSKVSIRAVR 132
Query: 121 QKALDMM------KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K+AG +D+++R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKDALDKLVKDKEAG----EDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|374853144|dbj|BAL56060.1| ribosome recycling factor [uncultured prokaryote]
Length = 185
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ AL EL +RTGRASP +++ ++V+ G L LA +S + + L+I PYDP
Sbjct: 13 MKGAVEALEAELLGIRTGRASPALVERLLVDYYGTPTQLQQLATISAPEPQLLTIRPYDP 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+T+KE+E AI +S LGLNP DG+ + IP LT+E + K+V + E+ K ++R R
Sbjct: 73 STIKEIERAIRASQLGLNPSNDGKIIRLVIPPLTEERRLELVKLVHRKVEEAKVAVRNCR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ L+ ++ K + +D+ R ++ ELT +Y++ + + K KE EI +
Sbjct: 133 RDTLEDLRNFKEEGLISEDEFFRGRDDLQELTDRYIEKVEAVGKRKEDEIRQ 184
>gi|408681024|ref|YP_006880851.1| Ribosome recycling factor [Streptomyces venezuelae ATCC 10712]
gi|328885353|emb|CCA58592.1| Ribosome recycling factor [Streptomyces venezuelae ATCC 10712]
Length = 186
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 14 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAITPINQLASFSVPEPRMAVVTPFDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI S LG+NP DG + P LT+E + KV +ED K SIR R
Sbjct: 74 SALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKGKAEDSKISIRSVR 133
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA +D K G + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 134 RKAKETIDKFVKDG-EVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 185
>gi|254488037|ref|ZP_05101242.1| ribosome recycling factor [Roseobacter sp. GAI101]
gi|214044906|gb|EEB85544.1| ribosome recycling factor [Roseobacter sp. GAI101]
Length = 187
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 100/169 (59%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI +L E LRTGR S MLD I+V+ G K P+N + V+V + + ++IN +D
Sbjct: 16 MDGAIASLRTEFASLRTGRGSASMLDPIMVDAYGTKTPINQVGTVNVPEPRMVTINVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI S LG+NP+++G ++ IP L +E ++ KV + +E + SIR R
Sbjct: 76 SLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRTSLTKVAGQYAEHARVSIRNIR 135
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA + +D K E E+ ++T KY+ D+ + K+ EI
Sbjct: 136 RDGMDQIKKAKADGMSEDDQKVWEGEVQDMTNKYIAMIDEQLETKQAEI 184
>gi|226366024|ref|YP_002783807.1| ribosome recycling factor [Rhodococcus opacus B4]
gi|254809526|sp|C1B2U5.1|RRF_RHOOB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|226244514|dbj|BAH54862.1| ribosome recycling factor [Rhodococcus opacus B4]
Length = 185
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +RTGRA+PGM + I ++ G P+ LA ++V +++ + + PY+
Sbjct: 13 MEKAVTVAKDDLGSIRTGRANPGMFNRIGIDYYGAFTPITQLASINVPEARLVVVKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI +S LG+NP DG + ++P LT+E + + K ED K S+R R
Sbjct: 73 SQLNAIETAIRNSDLGVNPSNDGNLIRISVPQLTEERRRELVKQAKSKGEDAKVSVRNVR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA+D + +K G + +D++ R EKE+D+ T +YV D++ K KE E+ E
Sbjct: 133 RKAMDELSRIQKDGEA-GEDEVGRAEKELDKTTARYVAQVDELVKHKEAELLE 184
>gi|85373585|ref|YP_457647.1| ribosome recycling factor [Erythrobacter litoralis HTCC2594]
gi|122544868|sp|Q2NBU1.1|RRF_ERYLH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|84786668|gb|ABC62850.1| ribosome recycling factor [Erythrobacter litoralis HTCC2594]
Length = 185
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ +L +L+ LRTGRA+ +LD ++VE G MPLN +A V+ + + L++ +D
Sbjct: 13 MAGAVESLKSDLSGLRTGRANTSLLDPVVVEVYGAMMPLNQVATVNAPEPRMLAVQVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E I + LGLNP DGQ + +P LT+E + + K+ + +E K +IR R
Sbjct: 73 ANVSAVEKGITKANLGLNPMTDGQTVRLPMPDLTEERRKELAKLAGQYAEKAKIAIRNVR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ ++ +K + + +D KR+E E+ +LT KYV AD +AKEKEI
Sbjct: 133 RDGMEDLKADEKAKDISEDDRKRMEDEVQKLTDKYVAEADSAAEAKEKEI 182
>gi|428221718|ref|YP_007105888.1| ribosome recycling factor [Synechococcus sp. PCC 7502]
gi|427995058|gb|AFY73753.1| ribosome recycling factor [Synechococcus sp. PCC 7502]
Length = 187
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 100/171 (58%), Gaps = 2/171 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I A + +RTGRAS +LD ++VE G PL LA V+ DS T+ I PYD
Sbjct: 15 MQKGIEATQQNFNTVRTGRASTALLDRVMVEYYGSPTPLKSLANVTTPDSTTIMIQPYDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+L + AI S +GL P DG + IP LT + + + K+VAK +E+ K +R R
Sbjct: 75 GSLNIISRAISESDVGLTPNNDGISIRLNIPPLTSDRRKELVKLVAKLAEEGKVGVRNVR 134
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
+ A+D ++K S + +D+ K L+++ID++T K++K D I KEKEI+
Sbjct: 135 RDAIDSVRKQEKSKEISEDESKNLQEQIDKITDKFIKKMDQILAEKEKEIS 185
>gi|308176749|ref|YP_003916155.1| ribosome-recycling factor [Arthrobacter arilaitensis Re117]
gi|307744212|emb|CBT75184.1| ribosome-recycling factor [Arthrobacter arilaitensis Re117]
Length = 185
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 98/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME I A + +RTGRA PGM ++V+ G PL LA +V +++T++I P+D
Sbjct: 13 MERTIDAAKEDFATIRTGRAHPGMYSKVMVDYYGSPTPLQQLASFAVPEARTITITPFDV 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+E+E A+ +G NP DG+ + +P LT+E + K+ ED + ++R R
Sbjct: 73 TALREIEKALGDPEVGANPSSDGKMIRVVLPVLTEERRKEYVKLAKAKGEDARVALRNHR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + K + +D+ R EK++D LTKK+V S D+I K KE E+ E
Sbjct: 133 RKAKDTIDKLVKDGEIGEDEGTRAEKDLDALTKKHVDSVDEILKNKEAELLE 184
>gi|92117244|ref|YP_576973.1| ribosome recycling factor [Nitrobacter hamburgensis X14]
gi|91800138|gb|ABE62513.1| ribosome recycling factor [Nitrobacter hamburgensis X14]
Length = 194
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI +L EL LRTGRA+ ML+ + VE G MPLN +A +SV +S+ LS+ +D
Sbjct: 22 MQGAIQSLKHELGGLRTGRAAASMLEPVQVEAYGSHMPLNQVATISVPESRLLSVQVWDK 81
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AIV S LGL+P +GQ L IP L +E + + KV K +E K ++R R
Sbjct: 82 SMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEAAKVAVRHVR 141
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD +KK + +D KRL ++ + T + D++ KEKEI
Sbjct: 142 RDGLDTIKKLEKNHEISEDDEKRLANDVQKATDGVISEIDELLAGKEKEI 191
>gi|340618323|ref|YP_004736776.1| ribosome recycling factor [Zobellia galactanivorans]
gi|339733120|emb|CAZ96495.1| Ribosome recycling factor [Zobellia galactanivorans]
Length = 184
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+AA+ L +E K+R G+ASP ML ++VE G + PL+ +A ++ D +TLS+ P++
Sbjct: 16 MDAAMRHLEKEFVKIRAGKASPAMLSSVMVEYYGSQTPLSQVANINTPDGRTLSVQPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L E+E AI++S LG NP +G +I +P LT+E + K +ED K IR +R
Sbjct: 76 NMLHEIEKAIMNSNLGFNPMNNGDFVIINVPPLTEERRIQLTKQAKAEAEDAKVGIRSAR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q A ++ S +D K E ++ LT KY+K D KE EI
Sbjct: 136 QDANKEIRDLDVS--EDLQKNAEVDVQALTDKYIKKVDAFLTVKEAEI 181
>gi|409195880|ref|ZP_11224543.1| ribosome recycling factor [Marinilabilia salmonicolor JCM 21150]
Length = 187
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 103/169 (60%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L REL K+R G+A+P MLD I+V+ G PL +A ++ D +T+++ P++
Sbjct: 16 MQKAIDHLDRELGKVRAGKANPKMLDGIMVDYYGSMTPLQQVASINTPDPRTIAVQPWER 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+++ LGLNP +G+ + IP LT+E Q + K V K E+ + SIR R
Sbjct: 76 GMIGPIEKAIMNANLGLNPDNNGELVRINIPPLTEERRQGLVKQVKKEGEEARISIRNGR 135
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ ++ +KK LP+D K E+++ +LT + K D++ + KEK+I
Sbjct: 136 RDVMNDLKKLKKDGLPEDMEKDAEEQVQKLTDNFTKRVDELLEKKEKDI 184
>gi|422875956|ref|ZP_16922426.1| ribosome recycling factor [Streptococcus sanguinis SK1056]
gi|332362392|gb|EGJ40192.1| ribosome recycling factor [Streptococcus sanguinis SK1056]
Length = 185
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D +++K++
Sbjct: 19 SLAREFGSIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPASDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK D++ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDEMTVNKEKELLE 184
>gi|222529797|ref|YP_002573679.1| ribosome recycling factor [Caldicellulosiruptor bescii DSM 6725]
gi|312127157|ref|YP_003992031.1| ribosome recycling factor [Caldicellulosiruptor hydrothermalis 108]
gi|312621978|ref|YP_004023591.1| ribosome recycling factor [Caldicellulosiruptor kronotskyensis
2002]
gi|254809487|sp|B9MKP8.1|RRF_ANATD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|222456644|gb|ACM60906.1| ribosome recycling factor [Caldicellulosiruptor bescii DSM 6725]
gi|311777176|gb|ADQ06662.1| ribosome recycling factor [Caldicellulosiruptor hydrothermalis 108]
gi|312202445|gb|ADQ45772.1| ribosome recycling factor [Caldicellulosiruptor kronotskyensis
2002]
Length = 184
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L E +R GRA+P +LD ++V+ GV P+ +A ++V +++ + I P++
Sbjct: 12 MKKAIETLKEEFATIRAGRANPHILDKVMVDYYGVPTPIPQVASITVPEARMIVIQPWEA 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LKE+E AI S LG+NP DG+ + P LT+E + + K V K +ED K +IR R
Sbjct: 72 RMLKEIEKAIQKSDLGVNPTNDGKVIRLIFPELTEERRKELVKQVKKMAEDAKVAIRNIR 131
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++ALD K K + + +D +K E+++ +L KY++ + + AKEKEI E
Sbjct: 132 REALDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKLLSAKEKEIME 183
>gi|374986205|ref|YP_004961700.1| ribosome recycling factor [Streptomyces bingchenggensis BCW-1]
gi|297156857|gb|ADI06569.1| ribosome recycling factor [Streptomyces bingchenggensis BCW-1]
Length = 185
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 95/173 (54%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGAMTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT++ + KV ED K SIR R
Sbjct: 73 TALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEQRRKEFIKVAKGKGEDAKISIRSVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA +D + K G + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKESIDKLIKDG-EVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|406659438|ref|ZP_11067576.1| ribosome recycling factor [Streptococcus iniae 9117]
gi|405577547|gb|EKB51695.1| ribosome recycling factor [Streptococcus iniae 9117]
Length = 185
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+LSRE +R GRA+ +LD I VE G PLN LA ++V +++ L I+P+D +++KE+
Sbjct: 19 SLSREYAGIRAGRANASLLDRIQVEYYGAMTPLNQLASITVPEARVLLISPFDKSSIKEI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI +S LG+ P DG + IPALT+E +++ K V K E+ K +IR R+ A++
Sbjct: 79 ERAINASDLGITPSSDGSVIRLVIPALTEETRKSLAKDVKKVGENAKIAIRNIRRDAMEE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I + T +K D + KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKSLEKDIQKATDDAIKHIDSMTANKEKELLE 184
>gi|418245472|ref|ZP_12871877.1| ribosome recycling factor [Corynebacterium glutamicum ATCC 14067]
gi|354510383|gb|EHE83307.1| ribosome recycling factor [Corynebacterium glutamicum ATCC 14067]
Length = 185
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A + +LT +RTGRA+P M + ++ E GV P+ ++ +SV + + L I PY+
Sbjct: 13 MTATVEHTREDLTTIRTGRANPAMFNGVMAEYYGVPTPITQMSGISVPEPRMLLIKPYEM 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++++ +E AI +S LG+NP DGQ L IP LT+E + M K+ ED K +IR R
Sbjct: 73 SSMQVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERSKDMAKLAKGKGEDGKIAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K +D +KK +D+++ EKE+D++T +V D++ KEKE+ E
Sbjct: 133 RKGMDQLKKLQKDGDAGEDEVQAAEKELDKVTAGFVAQVDEVVARKEKELME 184
>gi|153853432|ref|ZP_01994841.1| hypothetical protein DORLON_00830 [Dorea longicatena DSM 13814]
gi|149754218|gb|EDM64149.1| ribosome recycling factor [Dorea longicatena DSM 13814]
Length = 183
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 103/169 (60%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I L EL+ +R GRA+P +L+ I+V+ G P+ +A VSV +++ + I P++
Sbjct: 12 MKKTIGNLDGELSAIRAGRANPNVLNKIMVDYYGTPTPIQQVANVSVPEARMIQIQPWEK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++E+E AI++S LG+NP DG + P LT++ + + K V K E K +IR R
Sbjct: 72 KMVREIEKAIMTSDLGINPTNDGTTVRLLFPELTEDRRKELVKDVKKKGEAAKVAIRNIR 131
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KK GS + +D+MK +E ++ +LT KYVK D +AK KE+
Sbjct: 132 RDGIDSVKKLKGSDVSEDEMKDMEDDLQKLTDKYVKEVDKAVEAKSKEV 180
>gi|15902890|ref|NP_358440.1| ribosome recycling factor [Streptococcus pneumoniae R6]
gi|116516857|ref|YP_816318.1| ribosome recycling factor [Streptococcus pneumoniae D39]
gi|421265969|ref|ZP_15716852.1| ribosome recycling factor [Streptococcus pneumoniae SPAR27]
gi|32171542|sp|Q8DQ49.1|RRF_STRR6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|122278796|sp|Q04KY0.1|RRF_STRP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|15458449|gb|AAK99650.1| Ribosome recycling factor [Streptococcus pneumoniae R6]
gi|116077433|gb|ABJ55153.1| ribosome recycling factor [Streptococcus pneumoniae D39]
gi|395868705|gb|EJG79822.1| ribosome recycling factor [Streptococcus pneumoniae SPAR27]
Length = 185
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD + VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
+ A+ +S LG+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 DRALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|77408576|ref|ZP_00785312.1| ribosome recycling factor [Streptococcus agalactiae COH1]
gi|77172850|gb|EAO75983.1| ribosome recycling factor [Streptococcus agalactiae COH1]
Length = 185
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
E + +LSRE +R GRA+ +LD I VE G PLN LA ++V +++ L I+P+D
Sbjct: 13 FEQSHQSLSREFAGIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++K++E AI S LG+NP DG + IPALT+E + + K V K E+ K +IR R
Sbjct: 73 SSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D K + +D +K LEK+I + T VK D++ KEKE+ E
Sbjct: 133 RDAMDEAXKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEMTVNKEKELLE 184
>gi|332523063|ref|ZP_08399315.1| ribosome recycling factor [Streptococcus porcinus str. Jelinkova
176]
gi|332314327|gb|EGJ27312.1| ribosome recycling factor [Streptococcus porcinus str. Jelinkova
176]
Length = 185
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
E + +LSRE +R GRA+ +LD I V+ G PLN L+ ++V +++ L I+P+D
Sbjct: 13 FEQSFQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLSSITVPEARVLLISPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N++K++E AI +S LG+ P DG + IPALT+E + + K V K E+ K +IR R
Sbjct: 73 NSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKNLAKEVKKVGENQKVAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D KK + +D++K LEK+I + T +K D + KEKE+
Sbjct: 133 RDAMDEAKKQEKDKEISEDELKTLEKDIQKATDDAIKHIDAMTAEKEKEL 182
>gi|409992788|ref|ZP_11275959.1| ribosome recycling factor [Arthrospira platensis str. Paraca]
gi|291566938|dbj|BAI89210.1| ribosome recycling factor [Arthrospira platensis NIES-39]
gi|409936367|gb|EKN77860.1| ribosome recycling factor [Arthrospira platensis str. Paraca]
Length = 182
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ + R +RTGRA+ +LD I VE G PL LA +S D+ T++I P+D
Sbjct: 10 MKKALESTGRSFNTIRTGRANASLLDRITVEYYGSPTPLKSLASISTPDASTITIQPFDR 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N+L +E AI S +GL P DG + IP LT+ Q K+ K +E+ + S+R R
Sbjct: 70 NSLNNIEKAISMSDVGLTPNNDGSVVRLNIPPLTEARRQEFVKLAGKYAEEGRVSVRNVR 129
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K S + +D+ + L+ +I +LT KY D++ +AKEK+I
Sbjct: 130 RDAIDSVRKQEKSGDISEDESRDLQDQIQKLTDKYTAKVDELLEAKEKDI 179
>gi|114797846|ref|YP_760475.1| ribosome recycling factor [Hyphomonas neptunium ATCC 15444]
gi|123028025|sp|Q0C1B8.1|RRF_HYPNA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|114738020|gb|ABI76145.1| ribosome recycling factor [Hyphomonas neptunium ATCC 15444]
Length = 184
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L+ E LRTGRAS +LD I V G PL+ +A V+V D++ LS+N +D
Sbjct: 12 MEGALASLASEFAGLRTGRASVNLLDSIQVPAYGGVTPLSQVASVTVSDTRMLSVNVWDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + AI S LGLNP +DGQ L IP L +E + K+ K +E + ++R R
Sbjct: 72 TVVGAADRAIRDSGLGLNPVMDGQTLRIPIPPLNEERRVELTKIAGKYAEAARVAVRNVR 131
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA + +D+ + L +E+ +LT +VK D+ KAKE EI
Sbjct: 132 RDGMDDLKKAEKDGEISEDRHRALTEEVQKLTDAFVKRVDEALKAKEAEI 181
>gi|229545182|ref|ZP_04433907.1| ribosome recycling factor [Enterococcus faecalis TX1322]
gi|229309727|gb|EEN75714.1| ribosome recycling factor [Enterococcus faecalis TX1322]
Length = 185
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A +L REL ++R GRA+ +LD I VE G P+N LA +++ +++ L I P+D
Sbjct: 13 MTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVLMITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N++ ++E AI S +G++P DG + IP LT+E + + K V K +E+ K ++R R
Sbjct: 73 NSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSKVAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KKA S + +D+++ EK++ +LT +K+ D I KE+E+
Sbjct: 133 RDAMDELKKAQKNSDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQEL 182
>gi|149915215|ref|ZP_01903743.1| ribosome recycling factor [Roseobacter sp. AzwK-3b]
gi|149810936|gb|EDM70775.1| ribosome recycling factor [Roseobacter sp. AzwK-3b]
Length = 189
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ AL E LRTGRAS +L+ ++V+ G + P+N + V+V +S+ ++IN +D
Sbjct: 18 MEGAMGALKTEFASLRTGRASASILEPVMVDAYGQRTPINQVGTVNVPESRMVTINVWDK 77
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI S LG+NP+++G ++ IP L +E + + KV A+ +E + ++R R
Sbjct: 78 GLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRKELTKVAAQYAEHARVAVRNVR 137
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA + +D K E E+ +LT K++ D+ + K+ EI
Sbjct: 138 RDGMDQIKKAKADGMSEDDQKFWESEVQDLTNKFIAQVDEALETKQAEI 186
>gi|341614910|ref|ZP_08701779.1| ribosome recycling factor [Citromicrobium sp. JLT1363]
Length = 185
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +L +L LRTGRA+ +LD + VE G MPLN +A VS + + LS+ +D
Sbjct: 13 MQGAVESLKGDLAGLRTGRANTSLLDPVQVEVYGSMMPLNQVATVSAPEPRMLSVQVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E I + LGLNP DGQ L +P LT+E + + K+ K +E+ K +IR R
Sbjct: 73 GNVSAVEKGIAHANLGLNPMQDGQTLRIPMPDLTEERRRELAKLAGKYAENAKIAIRNVR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ ++ +K + + +D+ KR E ++ +LT KY AD +AKEKEI
Sbjct: 133 RDGMEALKEDEKKKEISEDERKRAEDDVQKLTDKYTSEADTAAEAKEKEI 182
>gi|426401295|ref|YP_007020267.1| ribosome recycling factor [Candidatus Endolissoclinum patella L2]
gi|425857963|gb|AFX98999.1| ribosome recycling factor [Candidatus Endolissoclinum patella L2]
Length = 185
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ L + LRTGRAS MLD ++V G K+ LN ++ VSVL+ + LS+ +D
Sbjct: 13 MDGAVANLKSDFCSLRTGRASANMLDSVMVNAYGTKISLNQISTVSVLEHRMLSVQVWDG 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
K +E AI S LGLNP+ G+ + ++P L++E + + ++ AK +E+ K ++R R
Sbjct: 73 GMNKVVEKAIRDSDLGLNPQSYGKTIHISLPDLSEERSKQVRRIAAKYAENAKIAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D++KK L +D+ + E++I ELT YVK D+ + K+K+I
Sbjct: 133 RDGMDILKKLEKDGCLSRDERRLYEQDIQELTNIYVKKIDEALEDKDKDI 182
>gi|406936245|gb|EKD70019.1| hypothetical protein ACD_46C00671G0007 [uncultured bacterium]
Length = 184
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I A E+TKLRTGRA+P +LDH+ V+ G +MP+N +A ++ D++TL+I P++
Sbjct: 12 MRKSIDAFKTEITKLRTGRANPSILDHVRVDYYGSEMPINQVANITTTDARTLTITPWEK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AI++S LGLNP G + +PAL +E + + KV+ +E + SIR R
Sbjct: 72 SMVKVIEKAILNSDLGLNPATTGDVIRVPMPALNEERRRELIKVLRNEAEAARVSIRNVR 131
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A +K+ S + +D+ +R+ ++ ++T K+V D + KE ++
Sbjct: 132 RDANAELKELLKSKQITEDEERRMTDDVQKITDKFVTEVDQLTTTKETDL 181
>gi|357030879|ref|ZP_09092823.1| ribosome recycling factor [Gluconobacter morbifer G707]
gi|356415573|gb|EHH69216.1| ribosome recycling factor [Gluconobacter morbifer G707]
Length = 188
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +L R+L+ LR+GRASP +L+ + VE G ++PL+ + ++V +++ L+++ +D
Sbjct: 16 MDGAMESLRRDLSGLRSGRASPNLLEPVRVEAYGSEVPLSQVGSIAVPEARMLTVSVWDR 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI S LGLNP DGQ + IPALT+E + + ++ +E+ K ++R R
Sbjct: 76 TVVGAVERAIRDSGLGLNPAADGQTIRVPIPALTEERRNELARAASRYAENAKIAVRGVR 135
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ ++ K + S + +D MK I +LT +YVK DD+ KE+EI +
Sbjct: 136 RDGMEQTKALEKKSEISQDDMKSWTDAIQKLTDQYVKKVDDVLADKEREIKQ 187
>gi|354559637|ref|ZP_08978884.1| Ribosome-recycling factor [Desulfitobacterium metallireducens DSM
15288]
gi|353541274|gb|EHC10743.1| Ribosome-recycling factor [Desulfitobacterium metallireducens DSM
15288]
Length = 185
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 98/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M + +L +E T +R GRA+P ML+ ++VE G P+N LA +SV +++ L + P+D
Sbjct: 13 MRKGVESLRKEYTVIRAGRANPSMLERVMVEYYGTPTPVNQLANISVPEARMLLLQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E I+ S LGLNP DG + IP LT E + K V K +ED + IR R
Sbjct: 73 TALPAIEKGIMKSDLGLNPSSDGNVIRLIIPQLTAERRTELVKTVKKKAEDSRVVIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D++KR + ++ ++T K++K D I KE+EI E
Sbjct: 133 RDTNDQLKKLEKDHTSSEDEVKRAQDDVQKMTDKFIKEIDTIMDTKEREITE 184
>gi|325281134|ref|YP_004253676.1| Ribosome-recycling factor [Odoribacter splanchnicus DSM 20712]
gi|324312943|gb|ADY33496.1| Ribosome-recycling factor [Odoribacter splanchnicus DSM 20712]
Length = 187
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+V L EL K+R G+A+P +L+ ++V+ G PL+ +A ++ D +T+++ P++
Sbjct: 16 MQNALVHLENELAKIRAGKANPKILNDVLVDYYGSPTPLSQVANITAPDPRTIAVQPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L ++ AI+++ LG NP +G+ + +P LT E + + K E K SIR +R
Sbjct: 76 NMLGPIQKAIMNANLGFNPDNNGEVVRINVPPLTAERRKELVKQSKGVGETAKVSIRNAR 135
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D KK S LP+D+ K E E+ ++T Y K D+I AKEK+I
Sbjct: 136 RDAIDEFKKMVKSGLPEDEAKDAEDEVQKITDSYNKKIDEILTAKEKDI 184
>gi|163791595|ref|ZP_02185996.1| ribosome recycling factor [Carnobacterium sp. AT7]
gi|159873144|gb|EDP67247.1| ribosome recycling factor [Carnobacterium sp. AT7]
Length = 185
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 101/164 (61%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
AL REL +R GRA+ G+LD I V G PL LA +SV + + L I P+D ++ ++
Sbjct: 19 ALQRELGTIRAGRANAGLLDRINVVYYGAPTPLKQLAQISVPEPRVLMITPFDKTSISDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E +I+ S LG++P DG + IP LT+E + + K V K +E+ K S+R R++A+D
Sbjct: 79 EKSIMQSDLGISPANDGNVIRLVIPQLTEERRKELAKKVGKEAENAKVSVRNIRREAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+KKA + + +D ++ E++I ++T + VK+ D I KEKE+
Sbjct: 139 LKKAEKNNEITQDDLRTFEEDIQKITNESVKNIDAIAAEKEKEL 182
>gi|145295926|ref|YP_001138747.1| ribosome recycling factor [Corynebacterium glutamicum R]
gi|417971675|ref|ZP_12612598.1| ribosome recycling factor [Corynebacterium glutamicum S9114]
gi|166230782|sp|A4QF29.1|RRF_CORGB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|140845846|dbj|BAF54845.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344044157|gb|EGV39838.1| ribosome recycling factor [Corynebacterium glutamicum S9114]
Length = 185
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A + +LT +RTGRA+P M + ++ E GV P+ ++ +SV + + L I PY+
Sbjct: 13 MTATVEHTREDLTTIRTGRANPAMFNGVMAEYYGVPTPITQMSSISVPEPRMLLIKPYEM 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++++ +E AI +S LG+NP DGQ L IP LT+E + M K+ ED K +IR R
Sbjct: 73 SSMQVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKDMVKLAKGKGEDGKIAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K +D +KK +D+++ EKE+D++T +V D++ KEKE+ E
Sbjct: 133 RKGMDQLKKLQKDGDAGEDEVQAAEKELDKVTAGFVAQVDEVVARKEKELME 184
>gi|427734019|ref|YP_007053563.1| ribosome recycling factor [Rivularia sp. PCC 7116]
gi|427369060|gb|AFY53016.1| ribosome recycling factor [Rivularia sp. PCC 7116]
Length = 182
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I A R +RTGRA+ +LD I+V V PL LA + D+ T++I PYD
Sbjct: 10 MKKSIEATQRSFNTIRTGRANSSLLDKIMVNYYDVDTPLKSLANIGTPDATTITIQPYDQ 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L +E AI S +GL P DG + IP LT+E + K+ AK +E+ + +IR R
Sbjct: 70 SSLGNIEKAISMSDVGLTPNNDGSIIRLNIPPLTEERRKEFVKLAAKYAEEGRVAIRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ ALD ++K + + +D+ + L+ E+ +LT KY DD+ KEKEI
Sbjct: 130 RDALDTIRKQEKNTEISEDESRDLQDEVQKLTNKYTSKIDDLLGEKEKEI 179
>gi|417940658|ref|ZP_12583946.1| ribosome recycling factor [Streptococcus oralis SK313]
gi|343389539|gb|EGV02124.1| ribosome recycling factor [Streptococcus oralis SK313]
Length = 197
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEK 166
KK + +D++K LEK+I ++T VK DD+ KEK
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEK 180
>gi|147677590|ref|YP_001211805.1| ribosome recycling factor [Pelotomaculum thermopropionicum SI]
gi|189044063|sp|A5D2T8.1|RRF_PELTS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|146273687|dbj|BAF59436.1| ribosome recycling factor [Pelotomaculum thermopropionicum SI]
Length = 185
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 101/171 (59%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I + +E LR GRA+P +LD ++V G P+N LA +SV +++ L + P+D
Sbjct: 13 MKKTIEVVKKEFASLRAGRATPALLDKVMVNYYGTPTPVNQLANISVPEARLLVVQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
L E+E AI+ S LG+ P DG + AIP LT+E + KV+ K +E+ + ++IR
Sbjct: 73 TVLPEIERAILKSDLGITPASDGNVIRLAIPQLTQERRAELMKVIKKKAEEGRVAIRNIR 132
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
R + L +K G + +D++KR + E+ +LT +Y+K D + KE+EI
Sbjct: 133 RDTNEQLKSQQKDG-KMSEDELKRSQDEVQKLTDRYIKEIDSLLSTKEQEI 182
>gi|319948055|ref|ZP_08022229.1| ribosome recycling factor [Dietzia cinnamea P4]
gi|319438294|gb|EFV93240.1| ribosome recycling factor [Dietzia cinnamea P4]
Length = 185
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ + EL +RTGRA+PGM + ++ E G P+ ++ ++V + + L I PY+
Sbjct: 13 MERALEHVRDELASIRTGRANPGMFNRVLCEYYGTLTPITQMSSITVPEPRMLIIKPYEM 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI +S LG+NP DGQ L +P LT+E + + K +ED + ++R R
Sbjct: 73 SQIGPIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRRDLVKQAKAKAEDGRIAVRGVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA+D +K+ +D++ EKE+D+LT++YV DD+ K KE E+ E
Sbjct: 133 RKAMDELKRIQKDGEAGEDEVTAAEKELDKLTQRYVADVDDLVKVKEGELME 184
>gi|398820219|ref|ZP_10578753.1| ribosome recycling factor [Bradyrhizobium sp. YR681]
gi|398229134|gb|EJN15222.1| ribosome recycling factor [Bradyrhizobium sp. YR681]
Length = 187
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +L EL LRTGRAS MLD + VE G MPLN LA VSV + + +S+ +D
Sbjct: 15 MQGAVSSLKHELGGLRTGRASASMLDPVQVEAYGNHMPLNQLATVSVPEPRLISVQVWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AIV S LGL+P +GQ L IP L +E + + KV K +E K + R R
Sbjct: 75 SMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEAAKVAARHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD++KK + +D KR E+ + T + D + AKEKEI
Sbjct: 135 RDGLDVLKKLEKNHEMSEDDQKRHADEVQKATDGTITEIDQLLAAKEKEI 184
>gi|111023540|ref|YP_706512.1| ribosome recycling factor [Rhodococcus jostii RHA1]
gi|384101513|ref|ZP_10002552.1| ribosome recycling factor [Rhodococcus imtechensis RKJ300]
gi|397736960|ref|ZP_10503635.1| ribosome recycling factor [Rhodococcus sp. JVH1]
gi|419964600|ref|ZP_14480554.1| ribosome recycling factor [Rhodococcus opacus M213]
gi|424852029|ref|ZP_18276426.1| ribosome recycling factor [Rhodococcus opacus PD630]
gi|432349930|ref|ZP_19593354.1| ribosome recycling factor [Rhodococcus wratislaviensis IFP 2016]
gi|122955102|sp|Q0S282.1|RRF_RHOSR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|110823070|gb|ABG98354.1| ribosome recycling factor [Rhodococcus jostii RHA1]
gi|356666694|gb|EHI46765.1| ribosome recycling factor [Rhodococcus opacus PD630]
gi|383841067|gb|EID80362.1| ribosome recycling factor [Rhodococcus imtechensis RKJ300]
gi|396927036|gb|EJI94270.1| ribosome recycling factor [Rhodococcus sp. JVH1]
gi|414569995|gb|EKT80734.1| ribosome recycling factor [Rhodococcus opacus M213]
gi|430770704|gb|ELB86635.1| ribosome recycling factor [Rhodococcus wratislaviensis IFP 2016]
Length = 185
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +RTGRA+PGM + I ++ G P+ LA ++V +++ + + PY+
Sbjct: 13 MEKAVTVAKDDLGSIRTGRANPGMFNRIGIDYYGAFTPITQLASINVPEARLVVVKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI +S LG+NP DG + ++P LT+E + + K ED K S+R R
Sbjct: 73 SQLGAIETAIRNSDLGVNPSNDGNLIRISVPQLTEERRRELVKQAKSKGEDAKVSVRNVR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA+D + +K G + +D++ R EKE+D+ T +YV D++ K KE E+ E
Sbjct: 133 RKAMDELSRIQKDGEA-GEDEVGRAEKELDKTTARYVAQVDELVKHKEAELLE 184
>gi|302038069|ref|YP_003798391.1| ribosome recycling factor [Candidatus Nitrospira defluvii]
gi|300606133|emb|CBK42466.1| Ribosome recycling factor [Candidatus Nitrospira defluvii]
Length = 187
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L R+L LRTGRAS ++D I V+ G PL +A V+ +++ ++I P++
Sbjct: 15 MDHAIEHLKRDLAGLRTGRASVALVDGIRVDYYGTMTPLKQVANVATPEARLITIQPWEQ 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N ++E+E AI +S LGL P DG+ + +P LT+E + + KV K E+VK IR R
Sbjct: 75 NLIREIEKAIQTSDLGLTPSNDGKLIRIPLPPLTEERRKELIKVCKKHGEEVKVQIRGFR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + +KK + L +D++++ E EI +LT +YV+ DD+ K KE EI E
Sbjct: 135 RDGNEELKKLQKDTKLTEDELRKSEAEIQKLTDQYVQKIDDVMKKKEGEILE 186
>gi|377559580|ref|ZP_09789127.1| ribosome-recycling factor [Gordonia otitidis NBRC 100426]
gi|377523250|dbj|GAB34292.1| ribosome-recycling factor [Gordonia otitidis NBRC 100426]
Length = 185
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ ++ +RTGRA+P M + I +E G P+ +A ++ +++ + I PY+P
Sbjct: 13 MEKAVGVAREDMGSIRTGRANPSMFNKIHIEYYGALTPITQVASITTPEARLVVIKPYEP 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+++E AI +S LG+NP DG + AIP LT++ + + K ED K +IR R
Sbjct: 73 SNLRDIETAIRNSDLGVNPTNDGNLIRVAIPQLTEDRRKDLVKQAKGKGEDAKVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA+D +K+ +D++ R EKE+D+ T YV D++ K KE E+ E
Sbjct: 133 RKAVDELKRIQKDGEAGEDEVSRAEKELDKTTAGYVHQVDELVKHKESELLE 184
>gi|302872259|ref|YP_003840895.1| ribosome recycling factor [Caldicellulosiruptor obsidiansis OB47]
gi|312135566|ref|YP_004002904.1| ribosome recycling factor [Caldicellulosiruptor owensensis OL]
gi|312793072|ref|YP_004025995.1| ribosome recycling factor [Caldicellulosiruptor kristjanssonii
177R1B]
gi|344996717|ref|YP_004799060.1| ribosome-recycling factor [Caldicellulosiruptor lactoaceticus 6A]
gi|302575118|gb|ADL42909.1| ribosome recycling factor [Caldicellulosiruptor obsidiansis OB47]
gi|311775617|gb|ADQ05104.1| ribosome recycling factor [Caldicellulosiruptor owensensis OL]
gi|312180212|gb|ADQ40382.1| ribosome recycling factor [Caldicellulosiruptor kristjanssonii
177R1B]
gi|343964936|gb|AEM74083.1| Ribosome-recycling factor [Caldicellulosiruptor lactoaceticus 6A]
Length = 184
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L E +R GRA+P +LD ++V+ GV P+ +A ++V +++ + I P++
Sbjct: 12 MKKAIETLKEEFATVRAGRANPHILDKVMVDYYGVPTPIPQVASITVPEARMIVIQPWEA 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LKE+E AI S LG+NP DG+ + P LT+E + + K V K +ED K +IR R
Sbjct: 72 RMLKEIEKAIQKSDLGVNPTNDGKVIRLIFPELTEERRKELVKQVKKMAEDAKVAIRNIR 131
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++ALD K K + + +D +K E+++ +L KY++ + + AKEKEI E
Sbjct: 132 REALDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKLLSAKEKEIME 183
>gi|357410907|ref|YP_004922643.1| ribosome recycling factor [Streptomyces flavogriseus ATCC 33331]
gi|320008276|gb|ADW03126.1| ribosome recycling factor [Streptomyces flavogriseus ATCC 33331]
Length = 185
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT++ + KV +ED K SIR R
Sbjct: 73 TALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEFIKVAKTKAEDSKISIRSIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K S +D+++R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKESLDKLVKDKES-GEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|346224344|ref|ZP_08845486.1| Ribosome-recycling factor [Anaerophaga thermohalophila DSM 12881]
Length = 187
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 104/169 (61%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L EL K+R G+A+P MLD ++VE G PL +A ++ D +T++I P++
Sbjct: 16 MQKAIDHLDHELGKIRAGKANPRMLDDVMVEYYGTMTPLQQVASINTPDPRTIAIQPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ +E AI+++ LGLNP +G+ + +P LT+E Q + K V K E+ + SIR +R
Sbjct: 76 GMIQPIEKAIMNANLGLNPDNNGEIVRINVPPLTEERRQDLVKHVKKEGEEARISIRNAR 135
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ D +KK LP+D K E ++ +LT K+ K +++ + KEK+I
Sbjct: 136 RETNDELKKLKKDGLPEDMEKDAEDQVQKLTDKFTKKVEEMLEKKEKDI 184
>gi|345009627|ref|YP_004811981.1| ribosome-recycling factor [Streptomyces violaceusniger Tu 4113]
gi|344035976|gb|AEM81701.1| Ribosome-recycling factor [Streptomyces violaceusniger Tu 4113]
Length = 185
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 95/173 (54%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT++ + KV ED K SIR R
Sbjct: 73 TALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEQRRKEFIKVAKAKGEDAKISIRSVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA +D + K G + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKESIDKLIKDG-DVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|225856606|ref|YP_002738117.1| ribosome recycling factor [Streptococcus pneumoniae P1031]
gi|254809536|sp|C1CK29.1|RRF_STRZP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|225725685|gb|ACO21537.1| ribosome recycling factor [Streptococcus pneumoniae P1031]
Length = 185
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRIHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG P DG + +PALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASDLGNTPANDGSVIRLVVPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK DD+ KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAVKHIDDMTANKEKELLE 184
>gi|326382902|ref|ZP_08204592.1| ribosome recycling factor [Gordonia neofelifaecis NRRL B-59395]
gi|326198492|gb|EGD55676.1| ribosome recycling factor [Gordonia neofelifaecis NRRL B-59395]
Length = 185
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L ++ +RTGRA+P M + +++E G P+ +A ++ + + + I PY+
Sbjct: 13 MEKAVAHLRDDMASIRTGRANPAMFNKVVIEYYGAMTPITQVAGINTPEPRLVVIKPYEQ 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+T+ ++E AI +S LG+NP DG + A+P LT+E + + K ED K +IR R
Sbjct: 73 STMNDIETAIRNSDLGVNPTNDGTVIRVAVPQLTEERRKQLGKQARGKGEDAKVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA+D +K+ +D++ R EKE+D T+ Y + D++ K KE E+ E
Sbjct: 133 RKAVDELKRIQKDGDAGEDEVTRAEKELDTTTRTYTDAVDELVKNKEAELLE 184
>gi|254294076|ref|YP_003060099.1| ribosome recycling factor [Hirschia baltica ATCC 49814]
gi|254042607|gb|ACT59402.1| ribosome recycling factor [Hirschia baltica ATCC 49814]
Length = 184
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L E + LRTGRAS +LD ++V+ G PL +A +SV + + L++N +D
Sbjct: 12 MEGAVASLKTEFSGLRTGRASVNLLDTVMVQAYGASTPLAQVASISVPEPRMLAVNVWDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + AI + LGLNP +DGQ L IP L +E + K+ K +E + +IR R
Sbjct: 72 TVVGAADKAIREAGLGLNPVMDGQNLRIPIPPLNEERRAELAKLAGKYAESARVAIRNVR 131
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D++KK + KD+ K LE ++ +LT K + S D K+KE+EI
Sbjct: 132 RDGMDILKKMEKDGEISKDEQKSLEDDVQKLTDKIISSVDASVKSKEEEI 181
>gi|409358273|ref|ZP_11236636.1| ribosome recycling factor [Dietzia alimentaria 72]
Length = 185
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ + EL+ +RTGRA+PGM + ++ E GV P+ +A ++V + + L I PY+
Sbjct: 13 MEKALDHVRDELSAIRTGRANPGMFNRVLCEYYGVLTPITQMAGITVPEPRMLIIKPYEM 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI +S LG+NP DGQ L +P LT+E + + K +ED + ++R R
Sbjct: 73 SQIGPIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRRDLVKQAKAKAEDGRIAVRGVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA+D +K+ +D++ EK++D+LT+++V D+I K KE E+ E
Sbjct: 133 RKAMDELKRIDKDGEAGEDEVNAAEKDLDKLTQRFVGDVDEIVKTKEGELME 184
>gi|145224703|ref|YP_001135381.1| ribosome recycling factor [Mycobacterium gilvum PYR-GCK]
gi|315445033|ref|YP_004077912.1| ribosome recycling factor [Mycobacterium gilvum Spyr1]
gi|189044062|sp|A4TC77.1|RRF_MYCGI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|145217189|gb|ABP46593.1| ribosome recycling factor [Mycobacterium gilvum PYR-GCK]
gi|315263336|gb|ADU00078.1| ribosome recycling factor [Mycobacterium gilvum Spyr1]
Length = 185
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +RTGRA+PGM + I ++ G P+ L+ ++V +++ + I PY+
Sbjct: 13 MEKAVSVARDDLASIRTGRANPGMFNRIHIDYYGASTPITQLSSINVPEARMVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L+ +E AI +S LG+NP DG + +IP LT+E + + K ED K SIR R
Sbjct: 73 NQLRPIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKSKGEDAKVSIRNIR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ + KK G + +D + R EK++D+ T +Y DD+ K KE E+ E
Sbjct: 133 RKAMEELARIKKDGDA-GEDDVTRAEKDLDKSTHQYTSQVDDLVKHKEGELLE 184
>gi|366166649|ref|ZP_09466404.1| ribosome recycling factor [Acetivibrio cellulolyticus CD2]
Length = 185
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I L ELT +R GRA+P +LD + V+ G P+N +A VSV + + + I P++
Sbjct: 13 MKKTINVLKDELTGVRAGRANPAILDKLTVDYYGTPTPINQIASVSVPEGRVIMIQPWEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+KE+E I S +G+NP DG+ + P LT+E + + KVV K ED K +IR R
Sbjct: 73 KMIKEIEKEIQKSDIGINPNNDGKVIRLVFPMLTEERRKELTKVVKKYGEDAKVAIRAIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ ++ MK K L +D +K EK+I +T KY+ D + + K+ EI E
Sbjct: 133 RDGIEHMKTLKKDGELTEDDLKTAEKDIQNMTDKYIAEIDKVVELKDAEILE 184
>gi|116618296|ref|YP_818667.1| ribosome recycling factor [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|227431621|ref|ZP_03913657.1| ribosome recycling factor [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
gi|381336695|ref|YP_005174470.1| ribosome recycling factor [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|122271504|sp|Q03WX8.1|RRF_LEUMM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|116097143|gb|ABJ62294.1| ribosome recycling factor [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|227352613|gb|EEJ42803.1| ribosome recycling factor [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
gi|356644661|gb|AET30504.1| ribosome recycling factor [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 181
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL REL +RTGRA+P +L+ + VE G PLN +A +SV +++ L I P+D
Sbjct: 12 MKGAQEALQRELANIRTGRANPNILNRVEVEYYGAMTPLNQVASISVPEARILLITPFDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ + AI S LGLNP DG + AIP +T+E + + K V +E K S+R R
Sbjct: 72 SALEAIVHAINVSDLGLNPASDGNIVRLAIPQMTEERRKELAKEVKAEAEKAKVSVRNVR 131
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KK +P+D ++ E + +LT + +K+ D+I KEKE+
Sbjct: 132 RDIMDDIKK-DKDMPEDDARKAEDQTQKLTDENIKAIDEIAAEKEKEL 178
>gi|335047128|ref|ZP_08540149.1| ribosome recycling factor [Parvimonas sp. oral taxon 110 str.
F0139]
gi|333760936|gb|EGL38491.1| ribosome recycling factor [Parvimonas sp. oral taxon 110 str.
F0139]
Length = 185
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I + ELT +R GRA+P +LD V+ G + P+ +A +SV +++ L I P+D
Sbjct: 13 MSKSIESYETELTTVRAGRANPTILDQFTVDYYGTETPIKQVASISVPEARLLVIQPWDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E I++S LG+ P DG+ + PALT++ + + KVV E+ K +IR R
Sbjct: 73 SLITPIEKVILASNLGITPSNDGKVIRLPFPALTEDRRKELVKVVKGYGENAKIAIRNLR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ LD +KK + +D++++ E+E+ ++T K++K +DI K+KEKE+ E
Sbjct: 133 RDGLDKLKKIEKDKEISEDELRQAEEEVQKVTDKFIKKVEDITKSKEKELME 184
>gi|312139239|ref|YP_004006575.1| ribosome recycling factor [Rhodococcus equi 103S]
gi|311888578|emb|CBH47890.1| ribosome recycling factor [Rhodococcus equi 103S]
Length = 185
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI +L +RTGRA+PGM + ++VE G P+ LA ++V + + + I PY+
Sbjct: 13 MEKAITVAKDDLGSIRTGRANPGMFNRVVVEYYGSMTPITQLASINVPEPRMVIIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI +S LG+NP DG + ++P LT+E + K ED K +IR R
Sbjct: 73 SQLGPIENAIRNSDLGVNPSNDGSIIRISVPQLTEERRREFVKQAKSKGEDAKVAIRNVR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K +D + +K G + +D++ R EKE+D+ T +YV D++ K KE E+ E
Sbjct: 133 RKTMDELSRIQKDGEA-GEDEVGRAEKELDKTTSRYVSQIDELVKHKEAELME 184
>gi|406669327|ref|ZP_11076606.1| ribosome recycling factor [Facklamia ignava CCUG 37419]
gi|405583840|gb|EKB57771.1| ribosome recycling factor [Facklamia ignava CCUG 37419]
Length = 186
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I + REL +R GRA+ +LD + V+ G PLN LA ++ +++ L I PYD
Sbjct: 14 MSKSIESFKRELGTIRAGRANASILDRVQVQYYGAPTPLNQLASIASPEARMLLITPYDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L E+E AI+ S +G+ P DG + IPALTKE Q + KVV K E+ K ++R R
Sbjct: 74 SSLGEIEKAILQSDVGITPSNDGNVIRLIIPALTKERRQELSKVVGKEQENAKIAVRNIR 133
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ ++D KKA L +D+++ E+EI ++T + K D + + K EI
Sbjct: 134 RDSIDEAKKAEKNKELTEDELRNYEEEIQKITDQSTKEIDKLAEEKIDEI 183
>gi|313115645|ref|ZP_07801101.1| ribosome recycling factor [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310622031|gb|EFQ05530.1| ribosome recycling factor [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 184
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 107/171 (62%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M++++ L REL +R GRA+P +LD + V+ G P+ +A V+V +++TL+I P+D
Sbjct: 12 MKSSVEHLGRELGAVRAGRANPAVLDKVSVDYYGAPTPIQQVASVAVAEARTLTITPWDR 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ + AI++S +G+ P DG + PA T+E + + K V+K E+ K ++R R
Sbjct: 72 TLLRPISKAIMASDVGITPIDDGSTIRLNFPAPTEERRKQLAKEVSKLGEEAKVAVRNIR 131
Query: 121 QKALD---MMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++A+D MKKAG L +D K +E+++ +LT KY+K+ D + K+KEI
Sbjct: 132 REAMDKAKAMKKAG-ELTEDSQKTMEEDVQKLTDKYIKNIDAAVEEKQKEI 181
>gi|430761254|ref|YP_007217111.1| Ribosome recycling factor [Thioalkalivibrio nitratireducens DSM
14787]
gi|430010878|gb|AGA33630.1| Ribosome recycling factor [Thioalkalivibrio nitratireducens DSM
14787]
Length = 185
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 108/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ AL E TK+RTGRA +LDH++VE G ++P+N +A V+V D++TL++ P++
Sbjct: 13 MDKSLEALRSEFTKIRTGRAHSSLLDHVLVEYYGSEVPINQVANVNVEDARTLTVTPWER 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + ++E AI++S LGLNP G + +PALT+E + + KVV +E+ + +IR R
Sbjct: 73 NMVGKVEKAIMTSDLGLNPATVGTVIRVPLPALTEERRRDLVKVVRGEAENARVAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A +K+ + +D+ +R + I +LT ++V D++ KE E+ E
Sbjct: 133 RDANHALKQQVKDKEISEDEERRAGERIQKLTDEHVARIDEMLAEKEAELME 184
>gi|167032162|ref|YP_001667393.1| ribosome recycling factor [Pseudomonas putida GB-1]
gi|189044066|sp|B0KSA2.1|RRF_PSEPG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166858650|gb|ABY97057.1| ribosome recycling factor [Pseudomonas putida GB-1]
Length = 185
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ AL R L +RTGRA P +LD + V G +MPLN +A ++V D++TL I +D
Sbjct: 13 MTKSLEALGRNLAAIRTGRAHPSILDTVKVTAWGSEMPLNQVAAITVEDARTLKIVAHDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N +E AI++S LGLNP G + +PALT+E + K + +ED K ++R R
Sbjct: 73 NLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQASGVAEDAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ AL +KK + +D+ +R EI +LT K+V D KAKEK++
Sbjct: 133 RDALADLKKLTKDKEISEDEERRAADEIQKLTDKFVAEVDAAFKAKEKDL 182
>gi|389815289|ref|ZP_10206635.1| ribosome recycling factor [Planococcus antarcticus DSM 14505]
gi|388466068|gb|EIM08377.1| ribosome recycling factor [Planococcus antarcticus DSM 14505]
Length = 185
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI A SR+L+ +R GRA+P +LD + ++ G P+N +A +S+ +++ + I PYD
Sbjct: 13 MTNAIQAFSRDLSSIRAGRATPSILDKLTIDYYGSPTPVNQVAGISIPEARLIMIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L ++E AI+ S LGL+P DG + A+PALT+E + + K V K +E+ K IR R
Sbjct: 73 SVLGDIEKAILKSDLGLSPSNDGSVIRLAVPALTEERRKDLAKQVKKEAEEAKVGIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D KK S + D ++ ++ +LT + D++ K KEKEI E
Sbjct: 133 RDANDEFKKLEKKSEITVDDLRGYSDDVQKLTDDNITKIDELAKGKEKEIME 184
>gi|56552049|ref|YP_162888.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis ZM4]
gi|260752418|ref|YP_003225311.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384411113|ref|YP_005620478.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|59802974|sp|Q9X5F0.2|RRF_ZYMMO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|56543623|gb|AAV89777.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis ZM4]
gi|258551781|gb|ACV74727.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|335931487|gb|AEH62027.1| ribosome recycling factor [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 185
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +L + + LRTGRAS +LD + V+ G MPLN +A VSV + + +++ +D
Sbjct: 13 MKGAVESLKSDFSGLRTGRASTSLLDPVTVDVYGANMPLNQVATVSVPEPRMITVQVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++ AI S+ LGLNP VDGQ L IP LT+E + + K+V + SE + ++R R
Sbjct: 73 SNVTPVDKAIRSAGLGLNPVVDGQMLRLPIPDLTEERRKELAKLVGQYSEKARIAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +K+ + + +D+ KR E E+ +LT K + D + KEKEI
Sbjct: 133 RDGNDQIKQDEKKNEISEDEKKRFENEVQKLTDKTIADIDALAVHKEKEI 182
>gi|260433807|ref|ZP_05787778.1| ribosome recycling factor [Silicibacter lacuscaerulensis ITI-1157]
gi|260417635|gb|EEX10894.1| ribosome recycling factor [Silicibacter lacuscaerulensis ITI-1157]
Length = 187
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 100/169 (59%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L E LRTGRAS MLD I+V+ G P+N + V+V + + ++IN +D
Sbjct: 16 MEGAMANLRTEFASLRTGRASASMLDPIMVDAYGSMTPINQVGTVNVPEPRMVTINVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI S LG+NP+++G ++ IP L +E + + KV +E + +IR R
Sbjct: 76 SLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVAGHYAEHARVAIRNVR 135
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA + L +D K E E+ ELT + +K+ D +AK+ EI
Sbjct: 136 RDGMDQIKKAKANGLSEDDQKFWENEVQELTDQMIKAVDTALEAKQAEI 184
>gi|84500821|ref|ZP_00999056.1| ribosome recycling factor [Oceanicola batsensis HTCC2597]
gi|84390888|gb|EAQ03306.1| ribosome recycling factor [Oceanicola batsensis HTCC2597]
Length = 187
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 100/169 (59%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME + L E LRTGRAS ML+ ++V+ G P+N + V+V + + +++N +D
Sbjct: 16 MEGTMSNLRTEFASLRTGRASASMLEPVMVDAYGSMTPVNQVGTVNVPEPRMVTVNVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + ++E AI S LG+NP+++G ++ IP L +E + + KV A+ +E + +IR R
Sbjct: 76 NLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVAAQYAESARVAIRNVR 135
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA L +D K E E+ +LT Y K D+ +AK++EI
Sbjct: 136 RDGMDQIKKAKADGLSEDDQKFWESEVQDLTDTYTKKVDEALEAKQEEI 184
>gi|339480625|ref|ZP_08656284.1| ribosome recycling factor [Leuconostoc pseudomesenteroides KCTC
3652]
gi|399516693|ref|ZP_10758284.1| Ribosome recycling factor [Leuconostoc pseudomesenteroides 4882]
gi|398648444|emb|CCJ66311.1| Ribosome recycling factor [Leuconostoc pseudomesenteroides 4882]
Length = 181
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL REL +RTGRA+P +L+ I VE G PLN +A +SV +++ L I P+D
Sbjct: 12 MQGAQEALQRELANIRTGRANPNILNRIEVEYYGAMTPLNQVASISVPEARILLITPFDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ + AI S LGLNP DG + AIP +T+E + + K V +E K S+R R
Sbjct: 72 SALEAIVHAINVSDLGLNPASDGNIVRLAIPQMTEERRKELAKEVKAEAEKAKVSVRNVR 131
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KK +P+D ++ E + +LT + +K+ D I KEKE+
Sbjct: 132 RDIMDDIKK-DKEMPEDDARKAEDQTQKLTDENIKAIDGIAAEKEKEL 178
>gi|328957401|ref|YP_004374787.1| ribosome recycling factor [Carnobacterium sp. 17-4]
gi|328673725|gb|AEB29771.1| ribosome recycling factor [Carnobacterium sp. 17-4]
Length = 185
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
AL REL +R GRA+ G+LD I V G PL LA +S+ + + L + P+D ++ ++
Sbjct: 19 ALQRELGTIRAGRANAGLLDRINVVYYGAPTPLKQLAQISIPEPRVLMVTPFDKTSISDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI+ S LG++P DG + IP LT+E + + K V K +E+ K S+R R++A+D
Sbjct: 79 EKAIMQSDLGISPANDGNVIRLVIPQLTEERRKELAKKVGKEAENAKVSVRNIRREAIDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+KKA + + +D ++ E++I ++T VK+ D I KEKE+
Sbjct: 139 LKKAEKNNEITQDDLRTFEEDIQKITNTSVKNIDGIAADKEKEL 182
>gi|104783192|ref|YP_609690.1| ribosome recycling factor [Pseudomonas entomophila L48]
gi|122402174|sp|Q1I629.1|RRF_PSEE4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|95112179|emb|CAK16906.1| ribosome releasing factor [Pseudomonas entomophila L48]
Length = 185
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I AL R L +RTGRA P +LD + V G MPLN +A ++V D++TL I +D
Sbjct: 13 MGKSIEALGRNLASIRTGRAHPSILDSVKVPAWGSDMPLNQVAAITVEDARTLKIVAHDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N +E AI++S LGLNP G + +PALT+E + K + +ED K ++R R
Sbjct: 73 NLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQASSVAEDAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ AL +KK + +D+ +R EI +LT K+V D KAKEK++
Sbjct: 133 RDALADLKKLTKDKEISEDEERRAADEIQKLTDKFVAEIDAAFKAKEKDL 182
>gi|94263226|ref|ZP_01287043.1| Ribosome recycling factor [delta proteobacterium MLMS-1]
gi|93456444|gb|EAT06564.1| Ribosome recycling factor [delta proteobacterium MLMS-1]
Length = 184
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ A REL+++RTGRAS +LD I VE G ++PLN +A +++ +S+ + I P+D
Sbjct: 12 MEQSLEAYRRELSRIRTGRASLNILDGIKVEAYGSQLPLNQVATLTIPESRMIVIQPWDA 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
K +E AI +S +GL P DG+ + IP LT+E + + K + K SE+ + ++R R
Sbjct: 72 QQGKAIEKAIQASDIGLTPSSDGKVIRLTIPQLTEERRKDLVKQLKKLSEEYRVAVRNVR 131
Query: 121 QKALDMMKKAGS--SLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A+D +KK + LP+D RL+ E + T + D I KEKE+ E
Sbjct: 132 REAIDRLKKLKNDKQLPEDDFFRLQDEAQKETDAAIAKIDTIMADKEKELME 183
>gi|374575789|ref|ZP_09648885.1| ribosome recycling factor [Bradyrhizobium sp. WSM471]
gi|386402621|ref|ZP_10087399.1| ribosome recycling factor [Bradyrhizobium sp. WSM1253]
gi|374424110|gb|EHR03643.1| ribosome recycling factor [Bradyrhizobium sp. WSM471]
gi|385743247|gb|EIG63443.1| ribosome recycling factor [Bradyrhizobium sp. WSM1253]
Length = 187
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI +L EL LRTGRAS MLD + V+ G MPLN LA VSV + + +S+ +D
Sbjct: 15 MQGAIQSLKHELGGLRTGRASASMLDPVQVDAYGSHMPLNQLATVSVPEPRLISVQVWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AIV S LGL+P +GQ L IP L +E + + KV K +E K + R R
Sbjct: 75 SMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEAAKVAARHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD++KK + +D KR E+ + T + D + AKEKEI
Sbjct: 135 RDGLDVLKKLEKNHEMSEDDQKRHADEVQKATDGTISEIDQLLAAKEKEI 184
>gi|339503499|ref|YP_004690919.1| ribosome recycling factor Frr [Roseobacter litoralis Och 149]
gi|338757492|gb|AEI93956.1| ribosome recycling factor Frr [Roseobacter litoralis Och 149]
Length = 187
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 101/169 (59%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI +L E LRTGRAS ML+ ++V+ G + P+N + V+V + + ++IN +D
Sbjct: 16 MDGAISSLKTEFASLRTGRASASMLEPVMVDAYGQRTPINQVGTVNVPEPRMVTINVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI S LG+NP+++G ++ IP L +E + + KV + +E + SIR R
Sbjct: 76 GLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELSKVAGQYAEHARVSIRNIR 135
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA + +D K E E+ E+T +Y+K D+ +K+ EI
Sbjct: 136 RDGMDQIKKAKADGMSEDDQKIWEGEVQEITDRYIKGIDEQLASKQSEI 184
>gi|253681713|ref|ZP_04862510.1| ribosome recycling factor [Clostridium botulinum D str. 1873]
gi|253561425|gb|EES90877.1| ribosome recycling factor [Clostridium botulinum D str. 1873]
Length = 185
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I L +EL+ ++ G+A+P MLD I VE G + P+N LA VS + + L I P+D
Sbjct: 13 MDKSISVLKKELSSMKAGKANPSMLDKIKVEYYGSETPINQLANVSSPEPRVLLIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N+LK++E AI+ S LGLNP DG + +P LT+E + + K V K E+ K +IR R
Sbjct: 73 NSLKDIERAILQSDLGLNPSNDGSVIRLIVPELTEETRKEIVKKVKKMGEEAKVAIRSIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K K + + +D+ K E + ++T K +K D++ KEK++
Sbjct: 133 RDANDKIKNLKKDNEITEDEAKEGEDSVQKITDKAIKEIDEVISLKEKDV 182
>gi|357420017|ref|YP_004933009.1| ribosome recycling factor [Thermovirga lienii DSM 17291]
gi|355397483|gb|AER66912.1| ribosome recycling factor [Thermovirga lienii DSM 17291]
Length = 185
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L +EL +RTGRA P +++ I VE G +P++ +A VS+ D + + I P+D
Sbjct: 13 MEKAVEHLKKELQGIRTGRAHPALVEDIKVEYYGSMVPISQMATVSIPDPRQILIAPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+K +E AI +SPLG+NP+VDG + IP LT E Q + K+V K +ED + ++R R
Sbjct: 73 TAVKPIEKAIQASPLGINPQVDGDVIRLNIPELTGERRQELSKLVKKYAEDARIAVRNLR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDIC 161
++ D +KK S + +DQM + I ++T +++K D++
Sbjct: 133 REGNDNIKKKEKSGEISEDQMHDYLERIQKITDEFIKKIDELA 175
>gi|162447997|ref|YP_001621129.1| ribosome recycling factor [Acholeplasma laidlawii PG-8A]
gi|189044043|sp|A9NHC3.1|RRF_ACHLI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|161986104|gb|ABX81753.1| ribosome recycling factor [Acholeplasma laidlawii PG-8A]
Length = 184
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ AL RE +RTGRA+P +LD I+V GV PL +A +SV +++ L I P+D
Sbjct: 16 MEKSLEALGREYAAVRTGRANPNILDRIMVSYYGVDTPLKQVASISVPEAQQLYIKPFDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ LK++E AI +S L L PR DG + +PALT E +++ K V K +E K +IR R
Sbjct: 76 SILKDIETAINTSSLELPPRNDGTGIRLTLPALTGERRRSLVKDVEKMAEAGKVAIRHIR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + +KK G L +D K +++ LT YVK D++ K K +E+
Sbjct: 136 RDGNEHLKKLG--LTEDDEKGYLEDVQALTDAYVKKVDELTKEKSEEL 181
>gi|417931337|ref|ZP_12574705.1| ribosome recycling factor [Propionibacterium acnes SK182B-JCVI]
gi|340776076|gb|EGR98126.1| ribosome recycling factor [Propionibacterium acnes SK182B-JCVI]
Length = 184
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +A+ E +RTGRA+P M + ++VE G PL LA V +++T+ I P+D
Sbjct: 12 MGSAVDHAREEFAAIRTGRANPAMFNKLMVEYYGTPTPLQQLASFQVPEARTVLIAPFDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E I S LG+NP DG + +PALT+E + K+ +E+ + ++R R
Sbjct: 72 SCVNDVEKTIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKTKAEEGRIAVRNIR 131
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + D++KK + +D+M RLEKE+D++T+KYV+ D++ K+KE E+ E
Sbjct: 132 RASNDVVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLKSKESELLE 183
>gi|253700113|ref|YP_003021302.1| ribosome recycling factor [Geobacter sp. M21]
gi|259494543|sp|C6E515.1|RRF_GEOSM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|251774963|gb|ACT17544.1| ribosome recycling factor [Geobacter sp. M21]
Length = 185
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 110/172 (63%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I +L +E K+RTGRA+ +LD I +++ G PLN +A +++ +++T++I+P+D
Sbjct: 13 MGKSIESLRKEYQKVRTGRATTSLLDDIKIDSYGTLSPLNQVATLAIPEARTITISPWDS 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI++S LGLNP DG+ + +P LT+E + + K + + +E+ K ++R R
Sbjct: 73 KMIAPIEKAIMNSNLGLNPANDGKMIRLVLPPLTEERRKDIVKQLKRDAEEAKVALRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D +KK S+ +D++KR EK++ + T +V D++ KEKE+ E
Sbjct: 133 RDAIDQLKKLEKDKSISEDELKRAEKDVQDSTNSHVAKVDEVLLHKEKEVME 184
>gi|365853673|ref|ZP_09393939.1| ribosome recycling factor [Lactobacillus parafarraginis F0439]
gi|363712076|gb|EHL95779.1| ribosome recycling factor [Lactobacillus parafarraginis F0439]
Length = 187
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 101/173 (58%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A L REL +R GRA+ +L + V+ G K PLN +A +S+ +++ + I PYD
Sbjct: 15 MKKAEEVLERELGTIRAGRANASILSSVTVDYYGAKTPLNQIASISIPEARVILITPYDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L+ +E I + LGL+P DG + AIPALT++ + + K V T E K ++R R
Sbjct: 75 SSLENIEKGIYEADLGLSPANDGSAIRLAIPALTEDRRKEIAKQVKATGEKSKVAVRNVR 134
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
++A+D K+ + + D++ RLE ++ +LT +KS D I KE E+ G
Sbjct: 135 REAMDTFKRDNKADDITDDELHRLEDQVQKLTDNAIKSVDTIVANKENEVMNG 187
>gi|149186826|ref|ZP_01865136.1| ribosome recycling factor [Erythrobacter sp. SD-21]
gi|148829493|gb|EDL47934.1| ribosome recycling factor [Erythrobacter sp. SD-21]
Length = 185
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI +L +L+ LRTGRA+ +LD ++VE G MPLN +A VS + + LS+ +D
Sbjct: 13 MKGAIESLKGDLSGLRTGRANTSLLDPVVVEVYGSMMPLNQVATVSAPEPRMLSVQVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E I + LGLNP +DGQ + +P LT+E + + K+ + +E K +IR R
Sbjct: 73 ANVTAVEKGIAKANLGLNPMIDGQNVRLPMPDLTEERRRDLAKLAGQYAEQSKIAIRNVR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ ++ +K + + +D KR E E+ +LT KYV A+ AKEKEI
Sbjct: 133 RDGMEALKEDEKKKEISEDDRKRSEDEVQKLTDKYVAEAEQAASAKEKEI 182
>gi|348169304|ref|ZP_08876198.1| ribosome recycling factor [Saccharopolyspora spinosa NRRL 18395]
Length = 185
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ EL +RTGRA+P M I+V+ G PLN LA VSV +++ + I PYD
Sbjct: 13 MQKAVEVAKDELATVRTGRANPAMFSGIVVDYYGSPTPLNQLASVSVPEARLVVIKPYDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
+ L +E AI S LG+NP DGQ + AIP +T+E + M K+ E+ K + IR
Sbjct: 73 SQLAAMEKAIRDSDLGVNPSNDGQLIRVAIPQMTEERRKEMVKLAKHKGEEGKITLRGIR 132
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
R ++ +D + K G + +D+ R EKE++ LT +YV D++ K KE E+ E
Sbjct: 133 RKVKEEIDRIVKDGEA-GEDEGTRGEKELENLTHRYVAQIDELVKHKEAELLE 184
>gi|332527873|ref|ZP_08403910.1| ribosome recycling factor [Rubrivivax benzoatilyticus JA2]
gi|332112450|gb|EGJ12243.1| ribosome recycling factor [Rubrivivax benzoatilyticus JA2]
Length = 186
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ A EL K+RTGRA PG+LD + VE G +P++ +A VS+LD++T+S+ P++
Sbjct: 14 MAKSVDAFKNELHKIRTGRAHPGILDQVHVEYYGSMLPISQVANVSLLDARTISVQPWEK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++E AI S LGLNP G L +PALT+E + + KVV T E+ K +R R
Sbjct: 74 GMGPKIEKAIRESDLGLNPSAQGDLLRVPMPALTEERRKELTKVVRHTGEEAKIHVRAVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK + +D +R + E+ LT + + D + +AKE E+
Sbjct: 134 RDANDQLKKLVKDKLVSEDDERRGQDEVQRLTDRTIAEIDKLVQAKEAEV 183
>gi|293394705|ref|ZP_06638997.1| ribosome recycling factor [Serratia odorifera DSM 4582]
gi|291422831|gb|EFE96068.1| ribosome recycling factor [Serratia odorifera DSM 4582]
Length = 173
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ A +++K+RTGRASP +LD I+VE G PL LA ++V DS+TL IN +D
Sbjct: 1 MEKSVEAFKNQISKIRTGRASPSILDGIMVEYYGAATPLRQLASITVEDSRTLKINVFDR 60
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+SS LGLNP G + +PALT+E + + KVV +E + S+R R
Sbjct: 61 SLSPAVEKAIMSSDLGLNPSSAGSDIRVPLPALTEERRKDLIKVVRGEAEQGRVSVRNVR 120
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +K + +D+ +R + ++ ++T Y+K D KEKE+ E
Sbjct: 121 RDANDKIKALLKDKEISEDEERRAQDDVQKMTDAYIKLVDAALADKEKELME 172
>gi|294815389|ref|ZP_06774032.1| Ribosome-recycling factor [Streptomyces clavuligerus ATCC 27064]
gi|294327988|gb|EFG09631.1| Ribosome-recycling factor [Streptomyces clavuligerus ATCC 27064]
Length = 173
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 1 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 60
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT+E + KV +ED K SIR R
Sbjct: 61 TALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVAKGKAEDSKISIRSVR 120
Query: 121 QK---ALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K A+D + K G + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 121 RKAKEAIDKLVKDG-EVGEDEGRRGEKELDDTTAKYVAQVDELLKHKEAELLE 172
>gi|148656147|ref|YP_001276352.1| ribosome recycling factor [Roseiflexus sp. RS-1]
gi|166231220|sp|A5UUU9.1|RRF_ROSS1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|148568257|gb|ABQ90402.1| ribosome recycling factor [Roseiflexus sp. RS-1]
Length = 185
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL L +RTGRASP +++H+ VE G +PLN LA ++V + + L I P+D
Sbjct: 13 MKKATEALRNHLATIRTGRASPALVEHLHVEAYGATLPLNQLATITVPEPRLLVIQPFDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
NT+K + AI++S LG+ P DG+ + AIP LT+ + + K+V E+ K ++R R
Sbjct: 73 NTVKAISKAIMNSELGITPTDDGRVIRLAIPQLTEARRKELTKLVRARVEESKIALRNIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++AL+ ++ + + +D+ +R ++++ ELT ++V+ D I KE E+ E
Sbjct: 133 REALEDLRDLEHEKMISEDEHRRAQEKLQELTDRFVRELDHIGATKEAEVME 184
>gi|399025834|ref|ZP_10727814.1| ribosome recycling factor [Chryseobacterium sp. CF314]
gi|398077262|gb|EJL68265.1| ribosome recycling factor [Chryseobacterium sp. CF314]
Length = 184
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 98/168 (58%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+AAI L ++R GRAS M+ ++VE G P+N +A VSV D+ T+SI P+D
Sbjct: 15 MDAAIKHLDHAFQRIRAGRASTSMVQDVMVEYYGAPTPINQVANVSVPDAMTISIQPWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI++S LG P +G+ +I +P LT+E + + K +E K +R +R
Sbjct: 75 TAINAIEKAIINSNLGFAPSNNGENIILNVPPLTEERRKELAKQAKSETEQTKIVVRNAR 134
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q+ L +KK + +D +K +E++I LT KYVK DD K K+ EI
Sbjct: 135 QEGLKELKKL-EGVSEDVIKGVEEDIQALTDKYVKLCDDHLKIKDAEI 181
>gi|291448100|ref|ZP_06587490.1| ribosome recycling factor [Streptomyces roseosporus NRRL 15998]
gi|411004860|ref|ZP_11381189.1| ribosome recycling factor [Streptomyces globisporus C-1027]
gi|291351047|gb|EFE77951.1| ribosome recycling factor [Streptomyces roseosporus NRRL 15998]
Length = 185
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT++ + KV +ED K SIR R
Sbjct: 73 TALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEYIKVAKTKAEDSKISIRSIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K S +D+++R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKENLDKLVKDKES-GEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|90423939|ref|YP_532309.1| ribosome recycling factor [Rhodopseudomonas palustris BisB18]
gi|122476317|sp|Q215E6.1|RRF_RHOPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|90105953|gb|ABD87990.1| ribosome recycling factor [Rhodopseudomonas palustris BisB18]
Length = 187
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A +L EL LRTGRA+ ML+ + VE G MPLN LA VSV + + LS+ +D
Sbjct: 15 MQGATQSLKHELGGLRTGRAAASMLEPVQVEAYGSHMPLNQLATVSVPEPRLLSVQVWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AIV S LGL+P +GQ L IP L +E + + KV K +E + ++R R
Sbjct: 75 SMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEATRVAVRHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD +KK S + +D +RL E+ + T + D + AKEKEI
Sbjct: 135 RDGLDTLKKLEKNSEISEDDQERLAHEVQKATDATILEVDQLLAAKEKEI 184
>gi|429768861|ref|ZP_19300990.1| ribosome recycling factor [Brevundimonas diminuta 470-4]
gi|429188414|gb|EKY29300.1| ribosome recycling factor [Brevundimonas diminuta 470-4]
Length = 185
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ +L + LRTGRA+ G+L+ ++VE G PL +A +SV + + +S++ +D
Sbjct: 13 MEKSVSSLKDDYAGLRTGRANSGLLEPVVVEAYGSTSPLTAVAAISVPEPRMISVSVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI S+ LGLNP VDGQ L IP LT+E + + K+ AK +ED K ++R R
Sbjct: 73 GMVVSVEKAIRSAGLGLNPIVDGQTLRIPIPPLTEERRKDLAKLAAKYAEDKKIAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KKA + +D+ K++E E+ + T +K D+ KAKE EI
Sbjct: 133 RDANDELKKAEKAGDISQDEQKKMEAEVQKDTDAAIKRIDETLKAKEVEI 182
>gi|239991100|ref|ZP_04711764.1| ribosome recycling factor [Streptomyces roseosporus NRRL 11379]
Length = 186
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 14 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT++ + KV +ED K SIR R
Sbjct: 74 TALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTQDRRKEYIKVAKTKAEDSKISIRSIR 133
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K S +D+++R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 134 RKAKENLDKLVKDKES-GEDEVRRAEKELDDTTAKYVAQVDELLKHKEAELLE 185
>gi|254392087|ref|ZP_05007276.1| ribosome recycling factor [Streptomyces clavuligerus ATCC 27064]
gi|326443741|ref|ZP_08218475.1| ribosome recycling factor [Streptomyces clavuligerus ATCC 27064]
gi|197705763|gb|EDY51575.1| ribosome recycling factor [Streptomyces clavuligerus ATCC 27064]
Length = 185
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT+E + KV +ED K SIR R
Sbjct: 73 TALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRRDYIKVAKGKAEDSKISIRSVR 132
Query: 121 QK---ALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K A+D + K G + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKEAIDKLVKDG-EVGEDEGRRGEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|167770609|ref|ZP_02442662.1| hypothetical protein ANACOL_01955 [Anaerotruncus colihominis DSM
17241]
gi|167667204|gb|EDS11334.1| ribosome recycling factor [Anaerotruncus colihominis DSM 17241]
Length = 184
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME I L E + +R GRA+P +LD I V+ G + +A +SV +++ L I P+D
Sbjct: 12 MEKTIRVLENEYSAIRAGRANPAVLDKITVDYYGTPTQIQAMAAISVSEARILVIQPWDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TL+ +E AI +S +G+NP DG + P LT+E + +CK + K ED K +IR R
Sbjct: 72 STLRPIEKAIQASDIGINPTNDGTVIRIVFPPLTEERRKEICKQIKKQGEDSKVAIRSIR 131
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + K K S + +D+ K LE ++ ++T K+ K D+I KEKEI E
Sbjct: 132 RDANEKFKALKKSSEVSEDEEKDLEDQMQKMTDKFCKRIDEIAAKKEKEILE 183
>gi|188995696|ref|YP_001929948.1| ribosome recycling factor [Porphyromonas gingivalis ATCC 33277]
gi|238689272|sp|B2RLV6.1|RRF_PORG3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|188595376|dbj|BAG34351.1| putative ribosome recycling factor [Porphyromonas gingivalis ATCC
33277]
Length = 186
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L +L+ +R G+ASP +LD I+V G PL +A ++ D+KT+ + P++
Sbjct: 14 MEKAVEYLDEQLSHVRAGKASPKLLDGIMVMYYGNATPLTQVASINTPDAKTIVVTPWER 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++E AI+ SPLG+ P +G+ + +P LT+E + + K + +ED K S+R +R
Sbjct: 74 SLIKDIEKAIMDSPLGITPENNGELIRLGLPPLTEERRRQLVKQIKGDAEDAKVSVRNAR 133
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK+ P+D K E E+ ++ +Y+K D++ KEKEI
Sbjct: 134 RDAIDAIKKSVKTDGTPEDVAKDAEAEMQKVHDRYIKKIDELFAEKEKEI 183
>gi|332298055|ref|YP_004439977.1| Ribosome-recycling factor [Treponema brennaborense DSM 12168]
gi|332181158|gb|AEE16846.1| Ribosome-recycling factor [Treponema brennaborense DSM 12168]
Length = 183
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 101/173 (58%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME I AL + LRTGRAS + D + V+ G PLN ++ +SV +++++ I P+D
Sbjct: 11 MEKTIAALKDDFKTLRTGRASAAIFDKVRVDYYGTPTPLNQVSTISVPEARSIVIQPFDK 70
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI S LGLNP DG+ + AIP LT + + + K T+E+ + +IR R
Sbjct: 71 SLIGEIEKAIQKSELGLNPSNDGKVIRIAIPPLTADRRKELVKQAKATAENSRVAIRNIR 130
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
+ D +KK SL +D +K E E+ + T K+++ + I + KEKEI EG
Sbjct: 131 RDGNDDLKKQQKDGSLTEDGLKTAETELQKSTDKFIQDINKILEEKEKEIMEG 183
>gi|444306121|ref|ZP_21141893.1| ribosome recycling factor [Arthrobacter sp. SJCon]
gi|443481579|gb|ELT44502.1| ribosome recycling factor [Arthrobacter sp. SJCon]
Length = 185
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ + +RTGRA+PG+ + ++V+ G PL LA ++ D++T+ I P+D
Sbjct: 13 MDKAVEVAKEDFAAVRTGRANPGLYNKVLVDYYGSPTPLQQLASFAIPDARTILITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++++E A+ S +G NP DG + IP LTKE + K+V ED K SIR R
Sbjct: 73 TAMRDIERALSDSEVGANPSNDGNVIRITIPELTKERRKEYVKIVKTKGEDAKISIRNIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D+ R EKE+D +TK +V D++ K KE E+ E
Sbjct: 133 RKAKETLDRLVKDGEA-GEDEGTRAEKELDSITKAHVDGIDELLKRKEAELLE 184
>gi|406708262|ref|YP_006758614.1| ribosome recycling factor [alpha proteobacterium HIMB59]
gi|406654038|gb|AFS49437.1| ribosome recycling factor [alpha proteobacterium HIMB59]
Length = 183
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M++ I A S +L +RTGR SP +L +II+++ G KMPL L+ ++ LD+ TLSIN +D
Sbjct: 11 MKSTITAFSNDLKNIRTGRVSPEILKNIIIDSYGSKMPLPQLSNINNLDNMTLSINIWDG 70
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ K +E I+ S LG P+ +G ++ P LT E + + K++ +TSE K SIR R
Sbjct: 71 SLTKSIEKNILESNLGATPQTEGNTILLKFPELTAERRKELVKIINETSEKFKVSIRNIR 130
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+K +D++K L D+ K+ ++ I + T + D + K KE EI
Sbjct: 131 RKYIDLVKDFEKDKILSIDESKKNQENIQKSTDNSISEIDTLAKHKENEI 180
>gi|375255069|ref|YP_005014236.1| ribosome recycling factor [Tannerella forsythia ATCC 43037]
gi|363407903|gb|AEW21589.1| ribosome recycling factor [Tannerella forsythia ATCC 43037]
Length = 187
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 106/169 (62%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +AI L EL ++R G+ASP +LD++ V G PL +++ ++ D+KT+ I P++
Sbjct: 16 MSSAIRYLDDELARIRAGKASPRILDNVKVSYYGSMTPLANVSSITTPDAKTMIITPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LKE+E AI+SS +G+ P +G+ + IP LT+E +++ K + +E K SIR +R
Sbjct: 76 PMLKEIEKAILSSEVGITPENNGEVIRLGIPPLTEERRRSLAKGAKQHAETAKISIRNTR 135
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ ++++KKA +P+D K E + ++ KYVK D++ AKEKEI
Sbjct: 136 REVIELLKKAIKEGVPEDAGKDAEATVQKIHDKYVKQVDELYAAKEKEI 184
>gi|373251458|ref|ZP_09539576.1| ribosome recycling factor [Nesterenkonia sp. F]
Length = 185
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME+A+ A S + +RTGRA+P + ++V+ G PL LA S D++T+ I PYD
Sbjct: 13 MESAVEATSEDFATVRTGRANPSLYSKVLVDYYGSPTPLQQLASFSTPDARTILITPYDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E+E A+ S +G NP DG+++ +P +T+E + K+V ED K S+R +R
Sbjct: 73 SAMREIEKALSDSEVGANPSNDGKQIRIVMPEMTEERRKEYAKLVKSKGEDHKVSVRNAR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D + KA + +D+ +R E++ LTK + + D++ + KE E+ E
Sbjct: 133 RKAKDAIAKAVKNGEIGEDEGERGHSELETLTKTHTERIDEMTRRKEAELLE 184
>gi|188586056|ref|YP_001917601.1| ribosome recycling factor [Natranaerobius thermophilus JW/NM-WN-LF]
gi|229564261|sp|B2A383.1|RRF_NATTJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|179350743|gb|ACB85013.1| ribosome recycling factor [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 184
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +L EL LR GRA+P +L+ I V+ G+ PLN LA +S + + L + PYD
Sbjct: 12 MKKALSSLKSELASLRAGRANPSILEGINVDYYGMATPLNQLANISAPEPRLLVVQPYDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++++E AI+ S +GL P DGQ + A+P LT+E + K+V + ED K +R R
Sbjct: 72 SAIEDIEKAILKSDVGLTPNNDGQVIRLAVPQLTEERRNELVKIVRQKGEDTKVVVRNVR 131
Query: 121 QKALD--MMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D + + +D+ R + EI ++T KY+K D++ AKE+EI
Sbjct: 132 RDANDELKKLEKEKEISEDESIRGQDEIQKITDKYIKKIDEVMNAKEEEI 181
>gi|291547840|emb|CBL20948.1| ribosome recycling factor [Ruminococcus sp. SR1/5]
Length = 183
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M + AL ELT +R GRA+P +LD + V+ G PL +A +SV +++ + I P++
Sbjct: 12 MGKTLNALESELTTIRAGRANPHILDKLTVDYYGAPTPLQQVANISVPEARMIQIQPWES 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AI+ S LGLNP DG+ + P LT+E + + K V K E K ++R R
Sbjct: 72 SMIKAIEKAILCSDLGLNPSNDGKMIRLVFPELTEERRKELVKDVKKKGEGAKVAVRNIR 131
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D KK A + +D++K LE +I +LT KY+K D + K KEI
Sbjct: 132 RDANDAFKKLAKQDVSEDEIKELEDQIQKLTDKYIKEVDKAIENKSKEI 180
>gi|196234716|ref|ZP_03133527.1| ribosome recycling factor [Chthoniobacter flavus Ellin428]
gi|196221224|gb|EDY15783.1| ribosome recycling factor [Chthoniobacter flavus Ellin428]
Length = 186
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME + E +RTG+ASP ++++I VE G +M L LA+++ + + L I P+D
Sbjct: 14 MEKGFEYMQHEFAAVRTGKASPALVENIDVEAYGSQMKLKQLALITTPEPRLLVIQPFDG 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+T K++E AI S +G+NP VDG+ + IPAL++E + + K + + +E+ + IR +R
Sbjct: 74 STTKDIERAIKESKIGINPAVDGKIIRLPIPALSEERRKDLVKGIKQMAEEARVRIRSAR 133
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA + +D ++ EKEI +LT + K DD AKE +I
Sbjct: 134 RDGIDGLKKAQKDGKITEDDLESYEKEIQKLTDGFTKKIDDAVNAKEADI 183
>gi|404329110|ref|ZP_10969558.1| ribosome recycling factor [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 186
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ + REL +R GRA+P +L+ + VE G + PL +A V+ +++ L I PYD
Sbjct: 14 MDKSVKSFQRELVTIRAGRANPSLLNKVTVEYYGAETPLKQIASVTAPEARLLLIQPYDR 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L +E I+ S LG+ P DG + AIP LT+E + KVV K +E+ K ++R R
Sbjct: 74 NALANIERGILKSDLGITPTNDGTVIRIAIPPLTEERRAELVKVVHKFAEEAKVAVRNIR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++A + +KK + L KD ++ E+E +LT +K D + K KEKE+
Sbjct: 134 REANEQIKKMEKNNELTKDDVRESEEETQKLTDTTIKRVDQLTKDKEKEM 183
>gi|297626637|ref|YP_003688400.1| ribosome recycling factor [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296922402|emb|CBL56974.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 185
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI + + +RTGRA+P M + + E GV P+ LA S D +T+ I PYD
Sbjct: 13 MQGAIDFAKEDFSGVRTGRANPAMFEKLEAEYYGVPTPIQQLASFSSPDPRTMLITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E A+ S LG+NP DG + A +P LT+E + K+V +ED K +IR R
Sbjct: 73 GALGAIEKAVRDSDLGVNPASDGNAIRAVLPELTEERRKEYIKIVRTKAEDAKIAIRGHR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ +D +K + + +D + EK++D +TKKY + D++ KAKE E+
Sbjct: 133 RRGMDAIKAQEKDKEIGEDDARVSEKQLDAVTKKYTELVDELLKAKEAEL 182
>gi|190360293|sp|Q28PI7.2|RRF_JANSC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
Length = 184
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 100/168 (59%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI +L E LRTGRAS ML+ ++V+ G P+N + V+V + + +++N +D
Sbjct: 16 MEGAIASLRTEFASLRTGRASASMLEPVMVDAYGAMTPINQVGTVNVPEPRMVTVNVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI S LG+NP+++G ++ IP L +E + + KV +E+ + ++R R
Sbjct: 76 GLVNKVEKAIRESGLGINPQMNGTIIMLPIPELNEERRRELTKVAGTYAENARVAVRNVR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA +S +D K E + ELT ++K DD + K++EI
Sbjct: 136 RDGMDQIKKADTS--EDDAKFWEGAVQELTDTFIKRVDDQLETKQEEI 181
>gi|121533727|ref|ZP_01665554.1| ribosome recycling factor [Thermosinus carboxydivorans Nor1]
gi|121307718|gb|EAX48633.1| ribosome recycling factor [Thermosinus carboxydivorans Nor1]
Length = 186
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ L +E LR GRA+P +LD + V+ G+ P+N +A +SV + + + I P++
Sbjct: 14 MKKALEVLRKEFASLRAGRATPSLLDKVTVDYYGMPSPINQVANISVPEPRLIVIQPWEK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LGL P DG + +IP LT++ + KVV K +E+ + +IR R
Sbjct: 74 SMLAPIEKAILKSDLGLTPTNDGNVIRLSIPQLTQQRRSELVKVVHKKAEEARVAIRNLR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+ K+ ++++ +LT KY+K D + AKEKEI E
Sbjct: 134 RDANDAIKKLEKEKQVSEDEAKKAQEDMQKLTDKYIKEVDQVMAAKEKEIME 185
>gi|313207473|ref|YP_004046650.1| ribosome recycling factor [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|383484836|ref|YP_005393748.1| ribosome recycling factor [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|386320524|ref|YP_006016686.1| Ribosome recycling factor [Riemerella anatipestifer RA-GD]
gi|416110450|ref|ZP_11592065.1| Ribosome recycling factor [Riemerella anatipestifer RA-YM]
gi|442315334|ref|YP_007356637.1| Ribosome recycling factor [Riemerella anatipestifer RA-CH-2]
gi|312446789|gb|ADQ83144.1| ribosome recycling factor [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|315023373|gb|EFT36383.1| Ribosome recycling factor [Riemerella anatipestifer RA-YM]
gi|325335067|gb|ADZ11341.1| Ribosome recycling factor [Riemerella anatipestifer RA-GD]
gi|380459521|gb|AFD55205.1| ribosome recycling factor [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|441484257|gb|AGC40943.1| Ribosome recycling factor [Riemerella anatipestifer RA-CH-2]
Length = 184
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 99/168 (58%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+AAI L K+R GRAS M+ ++VE G PLN +A VS+ D+ T++I P+D
Sbjct: 15 MDAAIKHLEHAFLKIRAGRASTAMVQDVMVEYYGSPTPLNQVANVSIPDAMTIAIQPWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++E I++S LG P +G +I +P LT+E + + K +E K ++R +R
Sbjct: 75 SAIKDIEKGIINSNLGFAPSNNGDTIILNVPPLTEERRKDLAKQAKAEAEQTKVTVRNAR 134
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q A+ +KK + +D +K E E+ +LT KY+ + DD K KE +I
Sbjct: 135 QDAMKDLKKL-DGVSEDIIKDTENEVQQLTDKYISTIDDHYKHKEVDI 181
>gi|348590216|ref|YP_004874678.1| ribosome recycling factor [Taylorella asinigenitalis MCE3]
gi|347974120|gb|AEP36655.1| Ribosome recycling factor [Taylorella asinigenitalis MCE3]
gi|399116103|emb|CCG18907.1| ribosome-recycling factor [Taylorella asinigenitalis 14/45]
Length = 186
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I +L L+K+RTGRA G+LDH+ V+ G +P++ +A VSV+D++TLS+ P++
Sbjct: 14 MNKSIESLKTNLSKIRTGRAHAGILDHVSVDYYGSLVPISQVANVSVVDARTLSVQPWEK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N ++ AI S LGLNP G+ + +PALT+E + + KVV ED K +IR R
Sbjct: 74 NMAGPIDKAIRESDLGLNPITLGESIRVPMPALTEERRRDLTKVVRAEGEDAKVAIRNLR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + D +KK + +D +R + I ++T KYV D I KE EI
Sbjct: 134 RDSNDTLKKLLKDKEISEDDDRRAQDVIQKMTDKYVGEIDKIISEKEAEI 183
>gi|308270379|emb|CBX26991.1| Ribosome-recycling factor [uncultured Desulfobacterium sp.]
Length = 191
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 106/173 (61%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I AL EL ++RTGRAS +LD I V+ G PLN +A +SV +S+ +++ P+D
Sbjct: 19 MGKSIAALQNELKRVRTGRASLSILDGIRVDYYGTLTPLNQIASLSVPESRLITVQPWDV 78
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
+ +KE+E AI+ S LGL P DG+ + +IP LT++ + + KVV K ED K ++IR
Sbjct: 79 SAIKEIEKAILKSDLGLTPSSDGKIIRISIPPLTEDRRKKLVKVVHKMCEDYKIAVRNIR 138
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
R +++ KK G L +D + + I ++T +++K D I K KEKEI E
Sbjct: 139 RDSNESIKGFKKDG-DLAEDAAFKAQDSIQKITDEHIKLIDGIYKEKEKEILE 190
>gi|386382860|ref|ZP_10068428.1| ribosome recycling factor [Streptomyces tsukubaensis NRRL18488]
gi|385669677|gb|EIF92852.1| ribosome recycling factor [Streptomyces tsukubaensis NRRL18488]
Length = 185
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A++ + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVLVAKDDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT+E + KV +ED K SIR R
Sbjct: 73 TALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTEERRREYIKVAKAKAEDAKISIRAVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA +D + K G + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKETIDKLVKDG-EVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|375088717|ref|ZP_09735055.1| ribosome recycling factor [Dolosigranulum pigrum ATCC 51524]
gi|374561682|gb|EHR33021.1| ribosome recycling factor [Dolosigranulum pigrum ATCC 51524]
Length = 185
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A +L EL +R GRA+ ++D I V G PLN +A +SV +++ L I+PYD
Sbjct: 13 MKKAEESLEYELGGIRAGRANASLVDRITVNYYGADTPLNQMANISVPEARVLLISPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TL ++E AI S +G+ P DG + IPALT+E + + K V + E+ K +IR R
Sbjct: 73 STLGDIETAIQKSDIGIPPSNDGDVIRLVIPALTEERRKEIAKRVGQEEENAKIAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KK+ + +D+ RLE +I +LT ++ K AD + KE EI
Sbjct: 133 RDGMDSVKKSEKNGDISEDERHRLEDDIQKLTDEFTKRADKAARVKEDEI 182
>gi|338739692|ref|YP_004676654.1| ribosome recycling factor [Hyphomicrobium sp. MC1]
gi|337760255|emb|CCB66086.1| Ribosome recycling factor (Ribosome releasing factor) (RRF)
[Hyphomicrobium sp. MC1]
Length = 187
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+I AL RE T LRTGRA +LD + V G +MPLN +A VSV + + +++ +D
Sbjct: 15 MRASIDALKREFTGLRTGRAHANLLDPVQVMVYGSRMPLNQVATVSVPEPRMITVQVWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++ AI + LGLNP DGQ L IPALT + Q + K+ K +E K S+R R
Sbjct: 75 SNVIAVDKAIREANLGLNPITDGQILRLPIPALTTDRRQELVKLAHKYAEQTKVSVRNVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++A+D++KK + +D+ + ++ ELT + +K D KE EI
Sbjct: 135 REAMDLLKKLEKDGKMSQDEQRGNSDKVQELTDRLIKEVDSTLATKEAEI 184
>gi|223985634|ref|ZP_03635684.1| hypothetical protein HOLDEFILI_02990 [Holdemania filiformis DSM
12042]
gi|223962401|gb|EEF66863.1| hypothetical protein HOLDEFILI_02990 [Holdemania filiformis DSM
12042]
Length = 182
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI S L +RTGRA+ GML + + G P+N ++ ++V++ + L + PYD
Sbjct: 13 MQKAIDTFSEHLETIRTGRANAGMLAGVEADYYGCPTPINQISSITVVEGRQLVVKPYDS 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK +E AI S LGLNP+ DG + +PALT+E + +CK V+K SE+ K ++R R
Sbjct: 73 SSLKAIEHAINKSDLGLNPQNDGSVIRINVPALTEETRKELCKKVSKLSEEAKIAVRNLR 132
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A ++ KK +L +D K ++I +LT + +K D + KEKEI
Sbjct: 133 RDANEIAKK-DDTLTEDAEKECLEKIQKLTDEMIKKVDSVAAEKEKEI 179
>gi|157372022|ref|YP_001480011.1| ribosome recycling factor [Serratia proteamaculans 568]
gi|166991559|sp|A8GIE3.1|RRF_SERP5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|157323786|gb|ABV42883.1| ribosome recycling factor [Serratia proteamaculans 568]
Length = 185
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ A +++K+RTGRASP +LD I+VE G PL LA V+V DS+TL IN +D
Sbjct: 13 MEKSVEAFKNQISKIRTGRASPSILDGIMVEYYGASTPLRQLASVTVEDSRTLKINVFDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+SS LGLNP G + +PALT+E + + K+V +E + ++R R
Sbjct: 73 SISAAVEKAIMSSDLGLNPSSAGSDIRVPLPALTEERRKDLIKIVRNEAEQGRVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +K + +D+ +R + ++ +LT Y+K D KEKE+ E
Sbjct: 133 RDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKLLDAALADKEKELME 184
>gi|374582861|ref|ZP_09655955.1| ribosome recycling factor [Desulfosporosinus youngiae DSM 17734]
gi|374418943|gb|EHQ91378.1| ribosome recycling factor [Desulfosporosinus youngiae DSM 17734]
Length = 185
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M + AL RE +R GRA+P +LD ++VE G P+N LA +S +++ L I P+D
Sbjct: 13 MHKGVDALRREYASIRAGRANPSVLDKVLVEYYGTPTPINQLANISAPEARLLMIQPWDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LGLNP DG + IP LT E + K V K +E+ + S+R R
Sbjct: 73 SVLPAIEKAIMKSDLGLNPSSDGSVIRLMIPQLTSERRVELVKAVKKKAEEARVSVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK +D++KR ++E+ ++T K +K + + +AKE EI E
Sbjct: 133 RDVNDQLKKLEKDHEASEDEVKRAQEEVQKMTDKIIKEIERVMEAKESEIME 184
>gi|335429738|ref|ZP_08556636.1| ribosome recycling factor [Haloplasma contractile SSD-17B]
gi|334889748|gb|EGM28033.1| ribosome recycling factor [Haloplasma contractile SSD-17B]
Length = 185
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I +L EL +RTGRA+P +LD + V G PLN +A ++V +++ L I PYD
Sbjct: 13 MDKSIESLRHELATVRTGRANPSLLDRVSVVYYGAPSPLNQVASITVPEARQLLIKPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L ++E AI + LGLNP DG + +IP+LT+E + + KVV K E+ K +IR R
Sbjct: 73 SILGDIERAINEANLGLNPNNDGNIIRISIPSLTEERRKELAKVVHKYGEEGKVAIRNVR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + D +KK + L D +K + ++ ELT +Y+ +++ KE+++
Sbjct: 133 RDSNDALKKMNKNGDLTDDDLKGYQDDVQELTDQYISKIENMVSEKEQDL 182
>gi|320352945|ref|YP_004194284.1| ribosome recycling factor [Desulfobulbus propionicus DSM 2032]
gi|320121447|gb|ADW16993.1| ribosome recycling factor [Desulfobulbus propionicus DSM 2032]
Length = 185
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ AL R+L K+RTGRAS +LD I V G +M L+ + +++ ++ ++I P+DP
Sbjct: 13 MTASSEALKRDLVKIRTGRASLSLLDGIKVNAYGSQMSLDQVGTLTIPENNMIAIKPWDP 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI++S LGL P DG + IP LT E + + K V K E+ K +IR R
Sbjct: 73 QVLPAIEKAILASGLGLTPASDGNVVRLTIPPLTGERRKELVKQVKKIGEEYKVAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A++ +KK L +D++ RL++E ++T Y+ D+I KEKE+
Sbjct: 133 RDAIETLKKMKKDKELSEDELFRLQEEAQKVTDGYIGQIDEITGGKEKEV 182
>gi|301059177|ref|ZP_07200117.1| ribosome recycling factor [delta proteobacterium NaphS2]
gi|300446725|gb|EFK10550.1| ribosome recycling factor [delta proteobacterium NaphS2]
Length = 185
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ AL ++ K+RTGRAS +LD I V+ +MP++ +A ++ +S+ ++I P+D
Sbjct: 13 MNKAVEALKKDFRKIRTGRASTALLDGIKVDCYDTQMPIDQVATIAAPESRLITIQPWDQ 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + LE +I+ S LGL P DG+ + +IP LT+E + + K+ K +ED K SIR R
Sbjct: 73 SIMGNLEKSILKSELGLTPMNDGKMIRISIPPLTEERRKELAKLARKMAEDNKISIRNFR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A DM K KA + +D++ + + ++ ++T ++++ D+ KE+EI E
Sbjct: 133 REANDMFKELKAEKEISEDELFKSQDDVQKITDEFIQKVDETTAKKEQEIIE 184
>gi|66827879|ref|XP_647294.1| hypothetical protein DDB_G0268518 [Dictyostelium discoideum AX4]
gi|60475777|gb|EAL73712.1| hypothetical protein DDB_G0268518 [Dictyostelium discoideum AX4]
Length = 263
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 99/168 (58%), Gaps = 2/168 (1%)
Query: 2 EAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPN 61
+ I +SREL +R GR P +L+ I VET + L H+A++++ DS TL+I YD +
Sbjct: 96 DKTIEYVSRELGNIRFGRVGPELLERINVETPSGNLLLPHMAMITIKDSLTLNITLYDSS 155
Query: 62 TLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQ 121
L +E A+ +S LGLNP+ + ++P T++ Q + K V SED K SIRR R+
Sbjct: 156 LLSNVERALTNSGLGLNPQTFDTTIRVSLPKPTQDLRQKLIKQVNTISEDAKVSIRRHRK 215
Query: 122 KALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
+D++K+ L KD K LEK I ++T Y+KS I + K KEIN
Sbjct: 216 DGMDILKRY--KLTKDDEKTLEKNIQKITDDYIKSITKITETKLKEIN 261
>gi|357639107|ref|ZP_09136980.1| ribosome recycling factor [Streptococcus urinalis 2285-97]
gi|418418155|ref|ZP_12991346.1| ribosome-recycling factor [Streptococcus urinalis FB127-CNA-2]
gi|357587561|gb|EHJ56969.1| ribosome recycling factor [Streptococcus urinalis 2285-97]
gi|410869254|gb|EKS17217.1| ribosome-recycling factor [Streptococcus urinalis FB127-CNA-2]
Length = 185
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
E + +LSRE +R GRA+ +LD I V+ G PLN LA ++V +++ L I+P+D
Sbjct: 13 FEQSHQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++K++E AI S LG+NP DG + IPALT+E + + K V K E+ K +IR R
Sbjct: 73 SSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRKDLAKEVKKIGENAKIAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D KK + +D++K LEK+I + T + VK D + KE+E+
Sbjct: 133 RDAMDEAKKQEKDKEITEDELKSLEKDIQKATDEAVKHIDKMTADKEEEL 182
>gi|209964517|ref|YP_002297432.1| ribosome recycling factor frr [Rhodospirillum centenum SW]
gi|226749936|sp|B6ISU8.1|RRF_RHOCS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|209957983|gb|ACI98619.1| ribosome recycling factor frr [Rhodospirillum centenum SW]
Length = 185
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ L +E LRTGRAS +LD + V+ G PLN +A V V + + +++ +D
Sbjct: 13 MDGAVETLRKEFGGLRTGRASTTLLDPVYVDAYGSSSPLNQVATVGVPEPRLITVQVWDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AI + LGLNP+ DGQ L IP L +E Q + KV AK +E + ++R R
Sbjct: 73 SLVKAVEKAIREAGLGLNPQSDGQTLRVPIPELNQERRQELAKVAAKYAEQARVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +DM+KK + +D+ K ++ LT ++K D+ KEKEI
Sbjct: 133 RDGMDMLKKLLKDGDISEDEQKTWADKVQALTDAHIKKIDEALATKEKEI 182
>gi|108804238|ref|YP_644175.1| ribosome recycling factor [Rubrobacter xylanophilus DSM 9941]
gi|123177371|sp|Q1AW65.1|RRF_RUBXD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|108765481|gb|ABG04363.1| ribosome recycling factor [Rubrobacter xylanophilus DSM 9941]
Length = 186
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A+ + +RTGRA+P +LD I VE G +MP+ +A + + + L+I PYDP
Sbjct: 14 MKGALEAVRHQFATIRTGRANPALLDRIEVEAYGTRMPIKSVASIGAPEPRLLTITPYDP 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LK +E AI S LGLNP+ DG+ + IP LT+E + + ++V +E+ + S+R R
Sbjct: 74 NLLKTIERAIRDSDLGLNPQNDGKIIRLPIPELTEERRRELIRLVRHMAEEGRVSVRNVR 133
Query: 121 QKAL---DMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + +++ G + +D +R E E+ +LT Y+K D+ KE E+ E
Sbjct: 134 RDEMHDIQRLRREG-EISEDDERRAEAELQKLTDAYIKRIDEALAEKEAELME 185
>gi|146297354|ref|YP_001181125.1| ribosome recycling factor [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|226703256|sp|A4XLZ9.1|RRF_CALS8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|145410930|gb|ABP67934.1| ribosome recycling factor [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 184
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L E +R GRA+P +LD ++V+ GV P+ LA ++V +++ + I P++
Sbjct: 12 MKKAIETLKEEFATVRAGRANPHILDKVMVDYYGVPTPIPQLASITVPEARMIVIQPWEA 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LKE+E AI + LG+NP DG+ + P LT+E + + K V K +ED K +IR R
Sbjct: 72 RMLKEIEKAIQKADLGVNPANDGKVIRLIFPELTEERRKELVKQVKKMAEDAKVAIRNIR 131
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A+D K K + + +D +K E+++ +L KY++ + + AKEKEI E
Sbjct: 132 REAIDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKLLSAKEKEIME 183
>gi|383782174|ref|YP_005466741.1| putative ribosome recycling factor [Actinoplanes missouriensis 431]
gi|381375407|dbj|BAL92225.1| putative ribosome recycling factor [Actinoplanes missouriensis 431]
Length = 185
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M++A+ E +RTGRA+P M I+V+ G P+ +A V V + + + + PYD
Sbjct: 13 MDSAVEHAKEEFAAIRTGRATPAMFSKILVDYYGAPTPVTQMASVGVPEPRMVIVKPYDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI S LG+NP +G +L +P +T+E + M KV +ED + +IR R
Sbjct: 73 SQLGPIERAIRDSDLGVNPNNEGTQLRIHLPQMTEERRREMIKVARGKAEDGRVAIRNIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD M K G + +D+ +R EKE+D+LT KYV D++ K KE E+ E
Sbjct: 133 RKAKDQLDKMVKDGDT-GEDEGRRAEKELDDLTHKYVGVVDELLKHKEAELLE 184
>gi|300870157|ref|YP_003785028.1| Ribosome recycling factor [Brachyspira pilosicoli 95/1000]
gi|404475508|ref|YP_006706939.1| Ribosome recycling factor [Brachyspira pilosicoli B2904]
gi|431806797|ref|YP_007233695.1| Ribosome recycling factor [Brachyspira pilosicoli P43/6/78]
gi|434382597|ref|YP_006704380.1| Ribosome recycling factor [Brachyspira pilosicoli WesB]
gi|300687856|gb|ADK30527.1| Ribosome recycling factor [Brachyspira pilosicoli 95/1000]
gi|404431246|emb|CCG57292.1| Ribosome recycling factor [Brachyspira pilosicoli WesB]
gi|404436997|gb|AFR70191.1| Ribosome recycling factor [Brachyspira pilosicoli B2904]
gi|430780156|gb|AGA65440.1| Ribosome recycling factor [Brachyspira pilosicoli P43/6/78]
Length = 182
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 100/171 (58%), Gaps = 2/171 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI +L +L +RTGRA+ +LD + VE G MPL + VS D+KT+ I P+D
Sbjct: 10 MEKAINSLQNDLKGIRTGRANASILDGVKVEAYGSSMPLKQVGNVSTPDAKTIMIQPFDK 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI+ + LG NP DG + +P LTKE + + K V E+ K +IR R
Sbjct: 70 ALVGDIEKAILKADLGFNPFNDGGNIRIMVPELTKERREELKKGVRHRGEEAKIAIRNIR 129
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
+ D++KK ++ +D+ K LEK+I T Y+K D++ +KEKE++
Sbjct: 130 RDENDIIKKDLKDKTITEDESKNLEKKIQNDTDSYIKKVDELITSKEKELD 180
>gi|289706653|ref|ZP_06503001.1| ribosome recycling factor [Micrococcus luteus SK58]
gi|289556573|gb|EFD49916.1| ribosome recycling factor [Micrococcus luteus SK58]
Length = 185
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I A + +RTGRA+PG+ ++V+ G PL LA + D++TL I P+D
Sbjct: 13 MDRTIEATREDFASVRTGRANPGLYSKVMVDYYGSFTPLQQLASFTTTDARTLLITPFDQ 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E A+ S +G NP DG+ + +P LT E + K+V +E+ K S+R +R
Sbjct: 73 SALRNIEKALSESEVGANPSNDGKVIRIVMPELTAERRKEYVKLVKSKAEEHKISVRNAR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA + M KA + +D+ R EKE+D LTK++V+ D++ K KE+E+ E
Sbjct: 133 RKAKEAMDKAVKDGEVGEDEGARGEKELDALTKRHVELIDEMAKNKEQELLE 184
>gi|241896312|ref|ZP_04783608.1| ribosome recycling factor [Weissella paramesenteroides ATCC 33313]
gi|241870473|gb|EER74224.1| ribosome recycling factor [Weissella paramesenteroides ATCC 33313]
Length = 185
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
AL REL +R G A+P +L +I VE G + PLN LA V+V +++ L I P+D + LK +
Sbjct: 19 ALRRELGNIRAGVANPSILRNITVEYYGAETPLNQLASVTVPEARVLLITPFDKSVLKGI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E +I +S LGL P DG + IPALT+E + + K V SE K ++R R+ A+D
Sbjct: 79 EQSIFASDLGLTPANDGSVIRLVIPALTEETRKDLAKEVKAESEKAKVAVRNVRRDAMDD 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KKA + L +D+ +E +I + T +K+ D+I KEKE+
Sbjct: 139 AKKALKNNDLSEDEAHNIEDDIQKATDAAIKNVDEIAAEKEKEL 182
>gi|19553226|ref|NP_601228.1| ribosome recycling factor [Corynebacterium glutamicum ATCC 13032]
gi|62390862|ref|YP_226264.1| ribosome recycling factor [Corynebacterium glutamicum ATCC 13032]
gi|24418653|sp|Q8NP03.1|RRF_CORGL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|21324793|dbj|BAB99416.1| Ribosome recycling factor [Corynebacterium glutamicum ATCC 13032]
gi|41326201|emb|CAF20363.1| RIBOSOME RECYCLING FACTOR [Corynebacterium glutamicum ATCC 13032]
gi|385144128|emb|CCH25167.1| ribosome releasing factor [Corynebacterium glutamicum K051]
Length = 185
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A + +LT +RTGRA+P M + ++ E GV P+ ++ ++V + + L I PY+
Sbjct: 13 MTATVEHTREDLTTIRTGRANPAMFNGVMAEYYGVPTPITQMSGITVPEPRMLLIKPYEM 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++++ +E AI +S LG+NP DGQ L IP LT+E + M K+ ED K +IR R
Sbjct: 73 SSMQVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKDMVKLAKGKGEDGKIAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K +D +KK +D+++ EKE+D++T +V D++ KEKE+ E
Sbjct: 133 RKGMDQLKKLQKDGDAGEDEVQAAEKELDKVTAGFVAQVDEVVARKEKELME 184
>gi|298291819|ref|YP_003693758.1| ribosome recycling factor [Starkeya novella DSM 506]
gi|296928330|gb|ADH89139.1| ribosome recycling factor [Starkeya novella DSM 506]
Length = 187
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L +EL+ LRTGRAS +L+ I V+ G MPLN +A V+V + + LS+ +D
Sbjct: 15 MQGAIAVLKQELSGLRTGRASASLLEPIQVDAYGSHMPLNQVASVNVPEPRLLSVQVWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI S LGLNP+ +GQ L IP LT++ Q + KV K +E + S+R R
Sbjct: 75 GMVAAVEKAIRESNLGLNPQTEGQVLRVRIPELTQDRRQELVKVAHKYAEAARVSVRHVR 134
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD +KKA + D + RL ++ + T + + D KEKEI
Sbjct: 135 RDGLDALKKAEKDGEMSSDDLDRLADQVQKATDQSITEIDQTLSTKEKEI 184
>gi|239917205|ref|YP_002956763.1| ribosome recycling factor [Micrococcus luteus NCTC 2665]
gi|281414322|ref|ZP_06246064.1| ribosome recycling factor [Micrococcus luteus NCTC 2665]
gi|259494549|sp|C5C9Q7.1|RRF_MICLC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|239838412|gb|ACS30209.1| ribosome recycling factor [Micrococcus luteus NCTC 2665]
Length = 185
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I A + +RTGRA+PG+ ++V+ G PL LA + D++TL I P+D
Sbjct: 13 MDRTIEATREDFVSVRTGRANPGLYSKVMVDYYGSFTPLQQLASFTTTDARTLLITPFDQ 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E A+ S +G NP DG+ + +P LT E + K+V +E+ K S+R +R
Sbjct: 73 SALRNIEKALSESEVGANPSNDGKVIRIVMPELTAERRKEYVKLVKSKAEEHKISVRNAR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA + M KA + +D+ R EKE+D LTK++V+ D++ K KE+E+ E
Sbjct: 133 RKAKEAMDKAVKDGEVGEDEGARGEKELDALTKRHVELIDEMAKNKEQELLE 184
>gi|409391198|ref|ZP_11242890.1| ribosome-recycling factor [Gordonia rubripertincta NBRC 101908]
gi|403199011|dbj|GAB86124.1| ribosome-recycling factor [Gordonia rubripertincta NBRC 101908]
Length = 185
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ ++ +RTGRA+P M + I +E G P+ +A ++ + + + I PY+
Sbjct: 13 MEKAVNVAKEDMGSIRTGRANPAMFNKINIEYYGAMTPVTQVASINTPEPRLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TL+++E AI +S LG+NP DG + AIP LT+E + + K ED K +IR R
Sbjct: 73 STLRDIETAIRNSDLGVNPTNDGTIIRIAIPQLTEERRRELVKQAKGKGEDAKVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D +K+ +D++ R EKE+D+ T YV DD+ K KE E+ E
Sbjct: 133 RKAADELKRIQKDGEAGEDEVTRAEKELDKTTATYVHQIDDLVKHKEDELLE 184
>gi|332665961|ref|YP_004448749.1| ribosome-recycling factor [Haliscomenobacter hydrossis DSM 1100]
gi|332334775|gb|AEE51876.1| Ribosome-recycling factor [Haliscomenobacter hydrossis DSM 1100]
Length = 188
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 104/169 (61%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L EL+K+ TG+ASP ++ ++V G P++ +A VS DS+T+ I P++
Sbjct: 17 MDKAIEHLKIELSKITTGKASPALVTSLMVAYYGTPTPMSQVASVSTSDSRTIVIQPWER 76
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E +I + LG+ P DGQ + +IP LT+E + + K A E+ K +R R
Sbjct: 77 SMLAPIEKSIFEANLGVTPMNDGQVVRLSIPPLTEERRRDLVKRCAHLGEESKVGVRSGR 136
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A++ +KKA + P+D K+LE++ D L+K+Y+ D++ K KEKEI
Sbjct: 137 RDAIEAIKKAVKNGTPEDLGKKLEEDADNLSKRYIGQVDELVKGKEKEI 185
>gi|150016075|ref|YP_001308329.1| ribosome recycling factor [Clostridium beijerinckii NCIMB 8052]
gi|189044050|sp|A6LSP3.1|RRF_CLOB8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|149902540|gb|ABR33373.1| ribosome recycling factor [Clostridium beijerinckii NCIMB 8052]
Length = 185
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I L +L+ ++ GRA+P MLD I VE G PL+ +A VS + + L I P++
Sbjct: 13 MKKTISVLKSDLSTMKAGRANPTMLDRIHVEYYGSMCPLSQVANVSAPEPRVLMITPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LKE+E AI+ S LGLNP DG + IP LT+E + + K V KT E+ K +IR R
Sbjct: 73 PLLKEIEKAILKSDLGLNPSSDGSIIRLVIPELTEETRKTLVKNVKKTGEEAKVAIRSIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K K L +DQ+K+ E E+ + T VK D I AKEKE+
Sbjct: 133 KTANDKIKALKKDEDLSEDQVKKAEDEVQKKTDAVVKEIDSIIAAKEKEV 182
>gi|149010411|ref|ZP_01831782.1| ribosome recycling factor [Streptococcus pneumoniae SP19-BS75]
gi|147764892|gb|EDK71821.1| ribosome recycling factor [Streptococcus pneumoniae SP19-BS75]
Length = 185
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 104/166 (62%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD + VE GV+ PLN +A +++ +++ L + P+D ++LK++
Sbjct: 19 SLAREFGGIRAGRANASLLDRVHVEYYGVETPLNQIASITIPEARVLLVTPFDKSSLKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S +G+ P DG + IPALT+E + + K V K E+ K ++R R+ A+D
Sbjct: 79 ERALNASDIGITPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKVAVRNIRRDAMDE 138
Query: 127 MKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I ++T VK +D+ KEKE+ E
Sbjct: 139 AKKREKAKEITEDELKTLEKDIQKVTDDAVKHINDMTANKEKELLE 184
>gi|403714030|ref|ZP_10939995.1| ribosome-recycling factor [Kineosphaera limosa NBRC 100340]
gi|403211849|dbj|GAB94678.1| ribosome-recycling factor [Kineosphaera limosa NBRC 100340]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 96/172 (55%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ + +RTGRA+PGM + ++V+ G PL LA +++T+ I PYD
Sbjct: 13 MEKAVEVAKEDFAGIRTGRATPGMFNKLMVDYYGAPTPLQQLASFQTPEARTVLITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ +E A+ S LG+NP DG + +PALT+E + K+ + ED K SIR R
Sbjct: 73 QSMSAIEKALRDSDLGVNPGNDGNTIRCVLPALTQERRKEYIKMAHRKGEDAKISIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D + K + +D+ R EKE++ LTKK+V D + K KE E+ E
Sbjct: 133 RHAKDSIDKLVKDGDVGEDEGTRTEKELETLTKKHVDLIDTLLKGKETELTE 184
>gi|363420027|ref|ZP_09308123.1| ribosome recycling factor [Rhodococcus pyridinivorans AK37]
gi|359736319|gb|EHK85265.1| ribosome recycling factor [Rhodococcus pyridinivorans AK37]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +RTGRA+PGM + I+V+ G P+ +A ++V +++ + + PY+
Sbjct: 13 MEKAVTVARDDLGGIRTGRANPGMFNRIVVDYYGAPTPITQIASINVPEARMVIVKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI +S LG+NP DG + ++P LT+E + + K ED K ++R R
Sbjct: 73 SQLNAIETAIRNSDLGVNPTNDGNIIRISVPQLTEERRRELVKQAKAKGEDAKVAVRNVR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ + +K G + +D + R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAMEELGRIQKEGEA-GEDDVNRAEKELDKTTAKYVGQIDELIKHKEAELME 184
>gi|284008517|emb|CBA75037.1| ribosome recycling factor [Arsenophonus nasoniae]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ AL +++K+RTGRASP +LD I+VE G PL LA ++ DS+TL+I +D
Sbjct: 13 MEKSVEALKSQISKVRTGRASPSLLDGIVVEYYGAATPLRQLANITAEDSRTLAITVFDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+E AI++S LGLNP G + +P LT+E + + KVV +E + S+R +R
Sbjct: 73 TLTPAVEKAIMASDLGLNPSSAGTIIRVPLPPLTEERRKDLIKVVRNDAEQGRVSVRNAR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +K + +D +R + EI +LT ++K D+ + KEKE+ E
Sbjct: 133 RDANDKIKALLKDKEISEDDERRAQDEIQKLTDNFIKKVDEALEQKEKELME 184
>gi|15892120|ref|NP_359834.1| ribosome recycling factor [Rickettsia conorii str. Malish 7]
gi|20139894|sp|Q92J72.1|RRF_RICCN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|15619247|gb|AAL02735.1| ribosome recycling factor [Rickettsia conorii str. Malish 7]
Length = 186
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L EL LRTGRAS +LD + VE G KMPL+ +A +S D++T+++ +D
Sbjct: 14 MEKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E I + LGL P DGQ + IPALT+E A+ K+ K ED K S+R R
Sbjct: 74 SMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTALVKLAHKYGEDTKISLRNIR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + +KK + + KD+ L +++ +LT Y D + K KE+EI
Sbjct: 134 RDGNEALKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEI 183
>gi|407452882|ref|YP_006724607.1| Ribosome recycling factor [Riemerella anatipestifer RA-CH-1]
gi|403313866|gb|AFR36707.1| Ribosome recycling factor [Riemerella anatipestifer RA-CH-1]
Length = 184
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 99/168 (58%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+AAI L K+R GRAS M+ ++VE G PLN +A VS+ D+ T++I P+D
Sbjct: 15 MDAAIKHLEHAFLKIRAGRASTAMVQDVMVEYYGSPTPLNQVANVSIPDAMTIAIQPWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++E I++S LG P +G +I +P LT+E + + K +E K ++R +R
Sbjct: 75 SAIKDVEKGIINSNLGFAPSNNGDTIILNVPPLTEERRKDLAKQAKAEAEQTKVTVRNAR 134
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q A+ +KK + +D +K E E+ +LT KY+ + DD K KE +I
Sbjct: 135 QDAMKDLKKL-DGVSEDIIKDTENEVQQLTDKYISTIDDHYKHKEVDI 181
>gi|421598802|ref|ZP_16042147.1| ribosome recycling factor [Bradyrhizobium sp. CCGE-LA001]
gi|404269087|gb|EJZ33422.1| ribosome recycling factor [Bradyrhizobium sp. CCGE-LA001]
Length = 187
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +L EL LRTGRAS MLD + V+ G MPLN LA VSV + + +S+ +D
Sbjct: 15 MQGAVQSLKHELGGLRTGRASASMLDPVQVDAYGSHMPLNQLATVSVPEPRLISVQVWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AIV S LGL+P +GQ L IP L +E + + KV K +E K + R R
Sbjct: 75 SMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEAAKVAARHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD++KK + +D KR E+ + T + D + AKEKEI
Sbjct: 135 RDGLDVLKKLEKNHEMSEDDQKRHADEVQKATDGTIAEIDQLLAAKEKEI 184
>gi|395243036|ref|ZP_10420024.1| Ribosome-recycling factor [Lactobacillus hominis CRBIP 24.179]
gi|394484856|emb|CCI81032.1| Ribosome-recycling factor [Lactobacillus hominis CRBIP 24.179]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 101/173 (58%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I ++L +R G A+ +LD I VE G PLN +A VS+ +++ L I PYD
Sbjct: 13 MDKSIAVYQKDLGGIRAGVANASLLDGIKVEYYGAPTPLNQMASVSIPEARVLMITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L ++E AI++S LG+ P DG + IP LT E Q + K V K +E K +IR R
Sbjct: 73 SSLDDIEHAILASDLGITPANDGTVIRIVIPQLTGERRQEIAKQVGKLAEQAKIAIRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
++A+D +K+ + +D+ + LEK++ ++T + K D + K KEI +G
Sbjct: 133 REAMDTLKRQEKNGDITEDEQRSLEKQVQKVTDESTKKVDQLADEKSKEITQG 185
>gi|443476544|ref|ZP_21066445.1| ribosome recycling factor [Pseudanabaena biceps PCC 7429]
gi|443018494|gb|ELS32734.1| ribosome recycling factor [Pseudanabaena biceps PCC 7429]
Length = 187
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A +RTGRA+ +LD I VE G + L LA +S D+ TL I P+D
Sbjct: 15 MQKAVEATQHNFNTVRTGRANASLLDRITVEYYGAETHLKALANISSPDASTLQIQPFDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+T++ +E AI S +GL P DG + IP LT + + + K+VAK +E+ K +IR R
Sbjct: 75 STMRAIEKAISESDIGLTPNNDGVSIRLNIPPLTTDRRKELVKMVAKLAEEGKVAIRNIR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
+ A+D ++K + +D K ++++D+LT+K+VK+ D + KEKEI+
Sbjct: 135 RDAIDSLRKLEKAKEISEDDSKSQQEQVDKLTEKFVKNIDKVTAEKEKEIS 185
>gi|402574053|ref|YP_006623396.1| ribosome recycling factor [Desulfosporosinus meridiei DSM 13257]
gi|402255250|gb|AFQ45525.1| ribosome recycling factor [Desulfosporosinus meridiei DSM 13257]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M + AL RE T +R GRA+P +LD ++VE G P+N LA +S +++ L I P+D
Sbjct: 13 MHKGVDALRREYTTIRAGRANPSVLDKVMVEYYGAPTPINQLANISTPEARMLLIQPWDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E I+ S LGLNP DG + IP LT E + K V K +E+ + ++R R
Sbjct: 73 TVLPAIEKGIMKSDLGLNPSSDGNVIRLMIPQLTAERRTELVKTVKKKAEEARVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D++KR + E+ ++T K +K D + + KE EI E
Sbjct: 133 RDVNDQLKKLEKDHEVSEDEVKRAQDEVQKITDKIIKEIDRVMETKESEIVE 184
>gi|255020970|ref|ZP_05293025.1| Ribosome recycling factor [Acidithiobacillus caldus ATCC 51756]
gi|340781586|ref|YP_004748193.1| ribosome recycling factor [Acidithiobacillus caldus SM-1]
gi|254969575|gb|EET27082.1| Ribosome recycling factor [Acidithiobacillus caldus ATCC 51756]
gi|340555739|gb|AEK57493.1| Ribosome recycling factor [Acidithiobacillus caldus SM-1]
Length = 186
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 108/174 (62%), Gaps = 6/174 (3%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I AL ELT+LRTGRAS G+LDH+ V+ G PL+ +A +SV D+++L + P++
Sbjct: 14 MKKSIEALKSELTRLRTGRASAGLLDHVEVDYYGSPTPLSQVASISVADARSLLVTPWEK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +++ AI + LGLNP + +PAL++E + M K+V + E + +IR R
Sbjct: 74 PLIPKIDKAIRDAGLGLNPVAGSDNVRVPLPALSEERRKEMVKIVRQEGEGARVAIRNIR 133
Query: 121 QKAL----DMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+ D++K+ S+ +D+ +R E+E +LT ++V D + +AKE ++ E
Sbjct: 134 RDAIAQVKDLLKQ--KSISEDEGRRAEEEFQKLTDRFVDEVDGVVEAKESDLME 185
>gi|377564303|ref|ZP_09793625.1| ribosome-recycling factor [Gordonia sputi NBRC 100414]
gi|377528485|dbj|GAB38790.1| ribosome-recycling factor [Gordonia sputi NBRC 100414]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ ++ +RTGRA+P M + I +E G P+ +A ++ +++ + I PY+P
Sbjct: 13 MEKAVGVAREDMGSIRTGRANPSMFNKIHIEYYGALTPVTQVASITTPEARLVVIKPYEP 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L+++E AI +S LG+NP DG + AIP LT++ + + K ED K +IR R
Sbjct: 73 SSLRDIETAIRNSDLGVNPTNDGNLIRVAIPQLTEDRRKELVKQAKGKGEDAKVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+K +D +K+ +D++ R EKE+D+ T YV D++ K KE E+ E
Sbjct: 133 RKTVDELKRIQKDGEAGEDEVSRAEKELDKTTAGYVHQVDELVKHKESELLE 184
>gi|29376892|ref|NP_816046.1| ribosome recycling factor [Enterococcus faecalis V583]
gi|227519884|ref|ZP_03949933.1| ribosome recycling factor [Enterococcus faecalis TX0104]
gi|227553929|ref|ZP_03983976.1| ribosome recycling factor [Enterococcus faecalis HH22]
gi|229549430|ref|ZP_04438155.1| ribosome recycling factor [Enterococcus faecalis ATCC 29200]
gi|255972134|ref|ZP_05422720.1| ribosome recycling factor [Enterococcus faecalis T1]
gi|255975201|ref|ZP_05425787.1| ribosome recycling factor [Enterococcus faecalis T2]
gi|256617047|ref|ZP_05473893.1| ribosome recycling factor [Enterococcus faecalis ATCC 4200]
gi|256763091|ref|ZP_05503671.1| ribosome recycling factor [Enterococcus faecalis T3]
gi|256853758|ref|ZP_05559123.1| ribosome recycling factor [Enterococcus faecalis T8]
gi|256956675|ref|ZP_05560846.1| ribosome recycling factor [Enterococcus faecalis DS5]
gi|256961308|ref|ZP_05565479.1| ribosome recycling factor [Enterococcus faecalis Merz96]
gi|256963564|ref|ZP_05567735.1| ribosome recycling factor [Enterococcus faecalis HIP11704]
gi|257079630|ref|ZP_05573991.1| ribosome recycling factor [Enterococcus faecalis JH1]
gi|257087429|ref|ZP_05581790.1| ribosome recycling factor [Enterococcus faecalis D6]
gi|257090589|ref|ZP_05584950.1| ribosome recycling factor [Enterococcus faecalis CH188]
gi|257416636|ref|ZP_05593630.1| ribosome recycling factor [Enterococcus faecalis ARO1/DG]
gi|257419852|ref|ZP_05596846.1| ribosome recycling factor [Enterococcus faecalis T11]
gi|257421959|ref|ZP_05598949.1| ribosome recycling factor [Enterococcus faecalis X98]
gi|293383593|ref|ZP_06629503.1| ribosome recycling factor [Enterococcus faecalis R712]
gi|293387294|ref|ZP_06631851.1| ribosome recycling factor [Enterococcus faecalis S613]
gi|294780910|ref|ZP_06746264.1| ribosome recycling factor [Enterococcus faecalis PC1.1]
gi|300861008|ref|ZP_07107095.1| ribosome recycling factor [Enterococcus faecalis TUSoD Ef11]
gi|307270847|ref|ZP_07552134.1| ribosome recycling factor [Enterococcus faecalis TX4248]
gi|307271503|ref|ZP_07552775.1| ribosome recycling factor [Enterococcus faecalis TX0855]
gi|307277169|ref|ZP_07558273.1| ribosome recycling factor [Enterococcus faecalis TX2134]
gi|307285820|ref|ZP_07565954.1| ribosome recycling factor [Enterococcus faecalis TX0860]
gi|307290551|ref|ZP_07570463.1| ribosome recycling factor [Enterococcus faecalis TX0411]
gi|312899827|ref|ZP_07759146.1| ribosome recycling factor [Enterococcus faecalis TX0470]
gi|312905119|ref|ZP_07764240.1| ribosome recycling factor [Enterococcus faecalis TX0635]
gi|312906143|ref|ZP_07765155.1| ribosome recycling factor [Enterococcus faecalis DAPTO 512]
gi|312909488|ref|ZP_07768343.1| ribosome recycling factor [Enterococcus faecalis DAPTO 516]
gi|312953477|ref|ZP_07772317.1| ribosome recycling factor [Enterococcus faecalis TX0102]
gi|384513794|ref|YP_005708887.1| ribosome recycling factor [Enterococcus faecalis OG1RF]
gi|384519254|ref|YP_005706559.1| ribosome recycling factor [Enterococcus faecalis 62]
gi|397700587|ref|YP_006538375.1| ribosome recycling factor [Enterococcus faecalis D32]
gi|421513057|ref|ZP_15959845.1| Ribosome recycling factor [Enterococcus faecalis ATCC 29212]
gi|422685119|ref|ZP_16743344.1| ribosome recycling factor [Enterococcus faecalis TX4000]
gi|422687902|ref|ZP_16746073.1| ribosome recycling factor [Enterococcus faecalis TX0630]
gi|422693234|ref|ZP_16751248.1| ribosome recycling factor [Enterococcus faecalis TX0031]
gi|422695903|ref|ZP_16753881.1| ribosome recycling factor [Enterococcus faecalis TX4244]
gi|422697825|ref|ZP_16755756.1| ribosome recycling factor [Enterococcus faecalis TX1346]
gi|422701365|ref|ZP_16759206.1| ribosome recycling factor [Enterococcus faecalis TX1342]
gi|422706973|ref|ZP_16764670.1| ribosome recycling factor [Enterococcus faecalis TX0043]
gi|422709902|ref|ZP_16767248.1| ribosome recycling factor [Enterococcus faecalis TX0027]
gi|422714941|ref|ZP_16771665.1| ribosome recycling factor [Enterococcus faecalis TX0309A]
gi|422717381|ref|ZP_16774066.1| ribosome recycling factor [Enterococcus faecalis TX0309B]
gi|422719850|ref|ZP_16776473.1| ribosome recycling factor [Enterococcus faecalis TX0017]
gi|422724769|ref|ZP_16781245.1| ribosome recycling factor [Enterococcus faecalis TX2137]
gi|422725973|ref|ZP_16782430.1| ribosome recycling factor [Enterococcus faecalis TX0312]
gi|422729562|ref|ZP_16785963.1| ribosome recycling factor [Enterococcus faecalis TX0012]
gi|422732324|ref|ZP_16788664.1| ribosome recycling factor [Enterococcus faecalis TX0645]
gi|422736801|ref|ZP_16793063.1| ribosome recycling factor [Enterococcus faecalis TX1341]
gi|422869078|ref|ZP_16915600.1| ribosome recycling factor [Enterococcus faecalis TX1467]
gi|424675685|ref|ZP_18112582.1| ribosome recycling factor [Enterococcus faecalis 599]
gi|424676241|ref|ZP_18113118.1| ribosome recycling factor [Enterococcus faecalis ERV103]
gi|424680583|ref|ZP_18117386.1| ribosome recycling factor [Enterococcus faecalis ERV116]
gi|424683126|ref|ZP_18119880.1| ribosome recycling factor [Enterococcus faecalis ERV129]
gi|424686668|ref|ZP_18123334.1| ribosome recycling factor [Enterococcus faecalis ERV25]
gi|424689567|ref|ZP_18126138.1| ribosome recycling factor [Enterococcus faecalis ERV31]
gi|424694073|ref|ZP_18130482.1| ribosome recycling factor [Enterococcus faecalis ERV37]
gi|424697652|ref|ZP_18133974.1| ribosome recycling factor [Enterococcus faecalis ERV41]
gi|424700149|ref|ZP_18136347.1| ribosome recycling factor [Enterococcus faecalis ERV62]
gi|424703009|ref|ZP_18139146.1| ribosome recycling factor [Enterococcus faecalis ERV63]
gi|424710164|ref|ZP_18143630.1| ribosome recycling factor [Enterococcus faecalis ERV65]
gi|424717877|ref|ZP_18147151.1| ribosome recycling factor [Enterococcus faecalis ERV68]
gi|424721101|ref|ZP_18150199.1| ribosome recycling factor [Enterococcus faecalis ERV72]
gi|424725042|ref|ZP_18153969.1| ribosome recycling factor [Enterococcus faecalis ERV73]
gi|424727278|ref|ZP_18155911.1| ribosome recycling factor [Enterococcus faecalis ERV81]
gi|424742066|ref|ZP_18170400.1| ribosome recycling factor [Enterococcus faecalis ERV85]
gi|424751198|ref|ZP_18179230.1| ribosome recycling factor [Enterococcus faecalis ERV93]
gi|428767605|ref|YP_007153716.1| ribosome-recycling factor [Enterococcus faecalis str. Symbioflor 1]
gi|430359653|ref|ZP_19425905.1| ribosome recycling factor [Enterococcus faecalis OG1X]
gi|430370074|ref|ZP_19428873.1| ribosome recycling factor [Enterococcus faecalis M7]
gi|34924912|sp|Q831V2.1|RRF_ENTFA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|29344357|gb|AAO82116.1| ribosome recycling factor [Enterococcus faecalis V583]
gi|227072678|gb|EEI10641.1| ribosome recycling factor [Enterococcus faecalis TX0104]
gi|227176915|gb|EEI57887.1| ribosome recycling factor [Enterococcus faecalis HH22]
gi|229305667|gb|EEN71663.1| ribosome recycling factor [Enterococcus faecalis ATCC 29200]
gi|255963152|gb|EET95628.1| ribosome recycling factor [Enterococcus faecalis T1]
gi|255968073|gb|EET98695.1| ribosome recycling factor [Enterococcus faecalis T2]
gi|256596574|gb|EEU15750.1| ribosome recycling factor [Enterococcus faecalis ATCC 4200]
gi|256684342|gb|EEU24037.1| ribosome recycling factor [Enterococcus faecalis T3]
gi|256710701|gb|EEU25744.1| ribosome recycling factor [Enterococcus faecalis T8]
gi|256947171|gb|EEU63803.1| ribosome recycling factor [Enterococcus faecalis DS5]
gi|256951804|gb|EEU68436.1| ribosome recycling factor [Enterococcus faecalis Merz96]
gi|256954060|gb|EEU70692.1| ribosome recycling factor [Enterococcus faecalis HIP11704]
gi|256987660|gb|EEU74962.1| ribosome recycling factor [Enterococcus faecalis JH1]
gi|256995459|gb|EEU82761.1| ribosome recycling factor [Enterococcus faecalis D6]
gi|256999401|gb|EEU85921.1| ribosome recycling factor [Enterococcus faecalis CH188]
gi|257158464|gb|EEU88424.1| ribosome recycling factor [Enterococcus faecalis ARO1/DG]
gi|257161680|gb|EEU91640.1| ribosome recycling factor [Enterococcus faecalis T11]
gi|257163783|gb|EEU93743.1| ribosome recycling factor [Enterococcus faecalis X98]
gi|291079105|gb|EFE16469.1| ribosome recycling factor [Enterococcus faecalis R712]
gi|291083331|gb|EFE20294.1| ribosome recycling factor [Enterococcus faecalis S613]
gi|294452036|gb|EFG20484.1| ribosome recycling factor [Enterococcus faecalis PC1.1]
gi|295113452|emb|CBL32089.1| ribosome recycling factor [Enterococcus sp. 7L76]
gi|300850047|gb|EFK77797.1| ribosome recycling factor [Enterococcus faecalis TUSoD Ef11]
gi|306498406|gb|EFM67911.1| ribosome recycling factor [Enterococcus faecalis TX0411]
gi|306502581|gb|EFM71848.1| ribosome recycling factor [Enterococcus faecalis TX0860]
gi|306506099|gb|EFM75265.1| ribosome recycling factor [Enterococcus faecalis TX2134]
gi|306511775|gb|EFM80773.1| ribosome recycling factor [Enterococcus faecalis TX0855]
gi|306512760|gb|EFM81405.1| ribosome recycling factor [Enterococcus faecalis TX4248]
gi|310627789|gb|EFQ11072.1| ribosome recycling factor [Enterococcus faecalis DAPTO 512]
gi|310628686|gb|EFQ11969.1| ribosome recycling factor [Enterococcus faecalis TX0102]
gi|310631509|gb|EFQ14792.1| ribosome recycling factor [Enterococcus faecalis TX0635]
gi|311290161|gb|EFQ68717.1| ribosome recycling factor [Enterococcus faecalis DAPTO 516]
gi|311293077|gb|EFQ71633.1| ribosome recycling factor [Enterococcus faecalis TX0470]
gi|315025416|gb|EFT37348.1| ribosome recycling factor [Enterococcus faecalis TX2137]
gi|315030225|gb|EFT42157.1| ribosome recycling factor [Enterococcus faecalis TX4000]
gi|315032889|gb|EFT44821.1| ribosome recycling factor [Enterococcus faecalis TX0017]
gi|315035626|gb|EFT47558.1| ribosome recycling factor [Enterococcus faecalis TX0027]
gi|315146673|gb|EFT90689.1| ribosome recycling factor [Enterococcus faecalis TX4244]
gi|315150163|gb|EFT94179.1| ribosome recycling factor [Enterococcus faecalis TX0012]
gi|315152144|gb|EFT96160.1| ribosome recycling factor [Enterococcus faecalis TX0031]
gi|315155331|gb|EFT99347.1| ribosome recycling factor [Enterococcus faecalis TX0043]
gi|315159093|gb|EFU03110.1| ribosome recycling factor [Enterococcus faecalis TX0312]
gi|315161686|gb|EFU05703.1| ribosome recycling factor [Enterococcus faecalis TX0645]
gi|315166409|gb|EFU10426.1| ribosome recycling factor [Enterococcus faecalis TX1341]
gi|315170306|gb|EFU14323.1| ribosome recycling factor [Enterococcus faecalis TX1342]
gi|315173660|gb|EFU17677.1| ribosome recycling factor [Enterococcus faecalis TX1346]
gi|315574370|gb|EFU86561.1| ribosome recycling factor [Enterococcus faecalis TX0309B]
gi|315579052|gb|EFU91243.1| ribosome recycling factor [Enterococcus faecalis TX0630]
gi|315580155|gb|EFU92346.1| ribosome recycling factor [Enterococcus faecalis TX0309A]
gi|323481387|gb|ADX80826.1| ribosome recycling factor [Enterococcus faecalis 62]
gi|327535683|gb|AEA94517.1| ribosome recycling factor [Enterococcus faecalis OG1RF]
gi|329572247|gb|EGG53907.1| ribosome recycling factor [Enterococcus faecalis TX1467]
gi|397337226|gb|AFO44898.1| ribosome recycling factor [Enterococcus faecalis D32]
gi|401673886|gb|EJS80256.1| Ribosome recycling factor [Enterococcus faecalis ATCC 29212]
gi|402350321|gb|EJU85225.1| ribosome recycling factor [Enterococcus faecalis 599]
gi|402353881|gb|EJU88703.1| ribosome recycling factor [Enterococcus faecalis ERV116]
gi|402357500|gb|EJU92207.1| ribosome recycling factor [Enterococcus faecalis ERV103]
gi|402365892|gb|EJV00306.1| ribosome recycling factor [Enterococcus faecalis ERV129]
gi|402367063|gb|EJV01414.1| ribosome recycling factor [Enterococcus faecalis ERV25]
gi|402367652|gb|EJV01991.1| ribosome recycling factor [Enterococcus faecalis ERV31]
gi|402371855|gb|EJV05999.1| ribosome recycling factor [Enterococcus faecalis ERV37]
gi|402374525|gb|EJV08541.1| ribosome recycling factor [Enterococcus faecalis ERV62]
gi|402375183|gb|EJV09175.1| ribosome recycling factor [Enterococcus faecalis ERV41]
gi|402383617|gb|EJV17212.1| ribosome recycling factor [Enterococcus faecalis ERV68]
gi|402383876|gb|EJV17455.1| ribosome recycling factor [Enterococcus faecalis ERV65]
gi|402385664|gb|EJV19196.1| ribosome recycling factor [Enterococcus faecalis ERV63]
gi|402392297|gb|EJV25561.1| ribosome recycling factor [Enterococcus faecalis ERV72]
gi|402392435|gb|EJV25696.1| ribosome recycling factor [Enterococcus faecalis ERV73]
gi|402397268|gb|EJV30296.1| ribosome recycling factor [Enterococcus faecalis ERV81]
gi|402401054|gb|EJV33854.1| ribosome recycling factor [Enterococcus faecalis ERV85]
gi|402405752|gb|EJV38336.1| ribosome recycling factor [Enterococcus faecalis ERV93]
gi|427185778|emb|CCO73002.1| ribosome-recycling factor [Enterococcus faecalis str. Symbioflor 1]
gi|429513277|gb|ELA02864.1| ribosome recycling factor [Enterococcus faecalis OG1X]
gi|429515623|gb|ELA05134.1| ribosome recycling factor [Enterococcus faecalis M7]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A +L REL ++R GRA+ +LD I VE G P+N LA +++ +++ L I P+D
Sbjct: 13 MTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVLMITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N++ ++E AI S +G++P DG + IP LT+E + + K V K +E+ K ++R R
Sbjct: 73 NSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSKVAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KKA + +D+++ EK++ +LT +K+ D I KE+E+
Sbjct: 133 RDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQEL 182
>gi|357022051|ref|ZP_09084282.1| ribosome recycling factor [Mycobacterium thermoresistibile ATCC
19527]
gi|356479799|gb|EHI12936.1| ribosome recycling factor [Mycobacterium thermoresistibile ATCC
19527]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +RTGRA+PGM ++++ G P+ L+ ++V +++ + I PY+
Sbjct: 13 MEKAVDVARDDLASIRTGRANPGMFSRVLIDYYGTPTPITQLSSINVPEARLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L+ +E AI +S LGLNP DG + AIP LT+E + + K E+ K SIR R
Sbjct: 73 NQLRNIEEAIRNSDLGLNPTNDGNVIRVAIPPLTEERRRELVKQAKAKGEEAKVSIRAVR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ + KK G + +D++ R EK++D+ T +Y D++ K KE E+ E
Sbjct: 133 RKAMEELHRIKKDGEA-GEDEVARAEKDLDKTTAQYTGQIDELVKTKEGELLE 184
>gi|390629450|ref|ZP_10257445.1| Ribosome-recycling factor [Weissella confusa LBAE C39-2]
gi|390485354|emb|CCF29793.1| Ribosome-recycling factor [Weissella confusa LBAE C39-2]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 98/163 (60%), Gaps = 2/163 (1%)
Query: 8 LSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELE 67
L REL +R G A+P +L ++ E G + PLN LA ++V +++ L I P+D + LK++E
Sbjct: 20 LRRELGNIRAGVANPSILRNVTAEYYGAETPLNQLASITVPEARVLLITPFDKSILKDIE 79
Query: 68 CAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMM 127
AI +S LGL P DG + IPALT+E +++ K V SE K ++R R+ A+D
Sbjct: 80 QAIFASDLGLTPANDGSVIRLVIPALTEETRKSLAKEVKGESEKAKVAVRNVRRDAMDDA 139
Query: 128 KKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KKA + +D+ ++LE +I + T VK+ D I KEKE+
Sbjct: 140 KKALKNGDMSEDEARKLEDDIQKATDAAVKNIDSIAAEKEKEL 182
>gi|295094737|emb|CBK83828.1| ribosome recycling factor [Coprococcus sp. ART55/1]
Length = 181
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ L E +R GRA+P +L+ I VE GV P+ LA ++V +++TL I P++P
Sbjct: 9 MQKSVENLEAEYATIRAGRANPNILNKIKVEYYGVPTPMQQLANITVPEARTLVIAPWEP 68
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +KE+E AI++S LG+ P DG+ +I P LT++ + + K + K E K +IR R
Sbjct: 69 SLVKEIEKAIMNSDLGITPNNDGRNIILNFPELTEDRRKELVKDIKKKGEGAKVAIRNIR 128
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK + +D++K E +I +LT KYV D ++K KEI
Sbjct: 129 RDANDAIKKMEKNGDISEDELKDNEDKIQKLTDKYVGQIDKAVESKSKEI 178
>gi|294677163|ref|YP_003577778.1| ribosome recycling factor [Rhodobacter capsulatus SB 1003]
gi|294475983|gb|ADE85371.1| ribosome recycling factor [Rhodobacter capsulatus SB 1003]
Length = 187
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ AL E LRTGRAS M++ I+V+ G +P+N + ++V + + +++N +D
Sbjct: 16 MEGAMHALKHEFGTLRTGRASASMVEPIMVDAYGSLVPINQVGTINVPEPRMVTVNVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI S LG+NP+ +G ++ IP L +E + + KV A+ +E + +IR R
Sbjct: 76 GMINKVEKAIRDSGLGINPQTNGPIIMLPIPELNEERRRELTKVAAQYAEHARVAIRNVR 135
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA + + +D K E EI+ELTKK++ D + K+ EI
Sbjct: 136 RDGMDQIKKAKANGMSEDDQKFWEGEIEELTKKHIGLVDKALEGKQAEI 184
>gi|392382124|ref|YP_005031321.1| ribosome recycling factor [Azospirillum brasilense Sp245]
gi|356877089|emb|CCC97892.1| ribosome recycling factor [Azospirillum brasilense Sp245]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A +EL+ LRTGRAS +L+ + +E G +M L + VSV + + + + +D
Sbjct: 13 MEGALEAFRKELSGLRTGRASASLLEPVTIEAYGARMHLKEVGTVSVPEPRLIVVQVWDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+K +E I S LGLNP+ +GQ + +P LT+E + + KV K +E + ++R R
Sbjct: 73 GMVKAVEKGIRDSGLGLNPQTEGQSIRVPLPDLTQERRKELAKVAHKYAEQARVAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA + +D+ K L +++ LT +Y+K DD AKEK+I
Sbjct: 133 RDGMDGLKKAEKAGDISQDEHKGLGEKVQALTDQYIKLVDDALAAKEKDI 182
>gi|255659930|ref|ZP_05405339.1| ribosome recycling factor [Mitsuokella multacida DSM 20544]
gi|260847801|gb|EEX67808.1| ribosome recycling factor [Mitsuokella multacida DSM 20544]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I AL E LR GRA+P +LD ++V G P+N +A V+V + + + I P++
Sbjct: 13 MKKSIEALKHEFASLRAGRATPSLLDKVMVNYYGAPTPVNQIAKVTVPEPRMIMIQPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L ++E AI+ S LGL+P DG + +IPALT+E Q + K V K +E+ K ++R R
Sbjct: 73 SILHDIEVAIMKSDLGLSPNSDGTAIRLSIPALTQERRQELVKTVNKKTEEAKVALRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + +KK + +D+ KR ++ + +L KYVK AD + KEKE+ E
Sbjct: 133 RDGNEDIKKLEKAKEITEDESKRGQESMQKLVDKYVKLADAAKEVKEKEVME 184
>gi|381182723|ref|ZP_09891513.1| ribosome recycling factor [Listeriaceae bacterium TTU M1-001]
gi|380317378|gb|EIA20707.1| ribosome recycling factor [Listeriaceae bacterium TTU M1-001]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A AL R L ++R GRA+ +LD + VE G PLN +A +S+ +++ L I P+D
Sbjct: 13 MEKAEQALVRTLGQIRAGRANASILDRVQVEYYGAPTPLNQMASISIPEARMLLITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + ++E AI+ S LGL P DG L IP LT+E + + K V K +E+ K ++R R
Sbjct: 73 NVIGDIEKAILKSDLGLTPNNDGSVLRLTIPQLTEERRRELAKEVKKEAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK + +D ++ +++ +LT +K+ D+I K KE EI
Sbjct: 133 RDANDELKKIEKAGDITEDDLRNYTEDVQKLTDTSIKNIDEIAKNKEAEI 182
>gi|15837653|ref|NP_298341.1| ribosome recycling factor [Xylella fastidiosa 9a5c]
gi|22001954|sp|Q9PEH7.1|RRF_XYLFA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|9105995|gb|AAF83861.1|AE003942_5 ribosome recycling factor [Xylella fastidiosa 9a5c]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 104/172 (60%), Gaps = 6/172 (3%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I AL L +RTGRASP +LD I ++ G PLN +A +SV + ++L I +D
Sbjct: 13 MTKSIDALRNSLASVRTGRASPSLLDGIKIKAYGTDTPLNQVASISVSEGRSLVITVFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N K++E AI +S LGL P V G + +P LT+E + + KVV ED K +IR R
Sbjct: 73 NMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHSEGEDTKVAIRNIR 132
Query: 121 ----QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q+ DM+K + +D++++ E++I +LT K +KS D++ K+KE+E+
Sbjct: 133 RDANQQIKDMLK--SKEITEDEVRQGEEDIQKLTDKAIKSVDEVVKSKEQEL 182
>gi|331269638|ref|YP_004396130.1| ribosome recycling factor [Clostridium botulinum BKT015925]
gi|329126188|gb|AEB76133.1| ribosome recycling factor [Clostridium botulinum BKT015925]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I L +EL+ ++ G+A+P MLD I VE G + P+N LA VS + + L I P+D
Sbjct: 13 MDKTISVLKKELSSMKAGKANPAMLDKIKVEYYGSETPINQLANVSSPEPRVLLIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N+LK++E AI+ S LGLNP DG + +P LT+E + + K V K E+ K +IR R
Sbjct: 73 NSLKDIERAILQSDLGLNPSNDGSVIRLIVPELTEETRKEIVKKVKKMGEEAKVAIRSIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K K + + +D+ K E + ++T K +K D++ +KE ++
Sbjct: 133 RDANDKIKNLKKDNEVTEDEAKEGEDSVQKITDKAIKQIDEVISSKENDV 182
>gi|441522881|ref|ZP_21004520.1| ribosome-recycling factor [Gordonia sihwensis NBRC 108236]
gi|441457521|dbj|GAC62481.1| ribosome-recycling factor [Gordonia sihwensis NBRC 108236]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L ++ +RTGRA+P M + ++++ G P+ +A ++ + + + I PY+
Sbjct: 13 MEKAVAHLRDDMASIRTGRANPAMFNKVVIDYYGAPTPITQVAGINTPEPRLVVIKPYEQ 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+T+ ++E AI +S LG+NP DG + AIP LT+E + + K ED K +IR R
Sbjct: 73 STMNDIETAIRNSDLGVNPTNDGTVIRVAIPQLTEERRKQLGKQARGKGEDAKVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA+D +K+ +D++ R EKE+D+ T Y + D++ K KE E+ E
Sbjct: 133 RKAVDELKRIQKDGDAGEDEVTRAEKELDKTTHTYTDAVDELVKNKEAELLE 184
>gi|356536011|ref|XP_003536534.1| PREDICTED: LOW QUALITY PROTEIN: ribosome-recycling factor,
chloroplastic-like [Glycine max]
Length = 256
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 102/171 (59%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I + + +RTGRA+P MLD I VE G + L +A +S D+ +L + PYD
Sbjct: 84 MDRTIDNVRTNFSSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDK 143
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
++LK +E IVSS LG+ P DG+ + IP LT + + + K+VAK +E+ K ++IR
Sbjct: 144 SSLKAIEKTIVSSDLGMTPNNDGESIQLRIPQLTSDRRKELSKIVAKQAEEGKVALRNIR 203
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
R KA D ++K L +D +K L ++ +LT +Y+K D I K KEKE+
Sbjct: 204 RDALKAYDKLEKEK-KLSEDNVKDLSSDLQKLTDEYMKKVDTIFKQKEKEL 253
>gi|319779547|ref|YP_004130460.1| ribosome recycling factor [Taylorella equigenitalis MCE9]
gi|397661778|ref|YP_006502478.1| ribosome-recycling factor [Taylorella equigenitalis ATCC 35865]
gi|317109571|gb|ADU92317.1| Ribosome recycling factor [Taylorella equigenitalis MCE9]
gi|394349957|gb|AFN35871.1| ribosome-recycling factor [Taylorella equigenitalis ATCC 35865]
gi|399115143|emb|CCG17942.1| ribosome-recycling factor [Taylorella equigenitalis 14/56]
Length = 186
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I +L L+K+RTGRA G+LDH+ V+ G +P++ +A VSV+D++TLS+ P++
Sbjct: 14 MNKSIESLKTNLSKIRTGRAHAGILDHVTVDYYGSLVPVSQVANVSVVDARTLSVQPWEK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N ++ AI S LGLNP G+ + +PALT+E + + KVV ED K +IR R
Sbjct: 74 NMAGPIDKAIRESDLGLNPITLGEAIRVPMPALTEERRRDLTKVVRAEGEDAKVAIRNLR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + D +KK + +D +R ++ I ++T K+V D I KE EI
Sbjct: 134 RDSNDTLKKLLKDKEISEDDDRRAQEVIQKMTDKFVGEIDKIVSEKEAEI 183
>gi|329117138|ref|ZP_08245855.1| ribosome recycling factor [Streptococcus parauberis NCFD 2020]
gi|333904554|ref|YP_004478425.1| ribosome recycling factor [Streptococcus parauberis KCTC 11537]
gi|326907543|gb|EGE54457.1| ribosome recycling factor [Streptococcus parauberis NCFD 2020]
gi|333119819|gb|AEF24753.1| ribosome recycling factor [Streptococcus parauberis KCTC 11537]
gi|456370410|gb|EMF49306.1| Ribosome recycling factor [Streptococcus parauberis KRS-02109]
gi|457095994|gb|EMG26465.1| Ribosome recycling factor [Streptococcus parauberis KRS-02083]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+LSRE +R GRA+ +LD I VE G PLN LA ++V +++ L I+P+D +++K++
Sbjct: 19 SLSREYASIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVLMISPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI +S LG+ P DG + IPALT+E + + K V K E K +IR R+ A+D
Sbjct: 79 ERAINASDLGITPANDGSIIRLVIPALTEETRKELAKEVKKVGESSKIAIRNIRRDAMDD 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KK + +D++K LEK+I + T +K D + KEKE+ E
Sbjct: 139 AKKQEKAKEITEDELKSLEKDIQKATDDAIKHIDQMTANKEKELLE 184
>gi|126729706|ref|ZP_01745519.1| ribosome recycling factor [Sagittula stellata E-37]
gi|126709825|gb|EBA08878.1| ribosome recycling factor [Sagittula stellata E-37]
Length = 186
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 99/168 (58%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L E LRTGRAS ML+ I+V+ G P+N + V+V + + ++IN +D
Sbjct: 16 MEGAMGSLRTEFASLRTGRASGSMLEPIMVDAYGAMTPINQVGTVNVPEPRMVTINVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI S LG+NP+++G ++ IP L +E + + KV + +E + SIR R
Sbjct: 76 SLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELSKVAGQYAEHARVSIRNIR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KK + +D K E E+ +LT Y+K D + K++EI
Sbjct: 136 RDGMDQIKKHKDDMSEDDAKLWESEVQDLTDSYIKKVDAALETKQEEI 183
>gi|451818154|ref|YP_007454355.1| ribosome-recycling factor Frr [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784133|gb|AGF55101.1| ribosome-recycling factor Frr [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I L +L+ ++ GRA+P MLD I V+ G PL +A VS + + L I P++
Sbjct: 13 MNKTISVLKSDLSTMKAGRANPTMLDRIQVDYYGSMCPLTQVANVSAPEPRVLMITPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LKE+E AI+ S LGLNP DG + +P LT+E + + K V KT E+ K ++R R
Sbjct: 73 PLLKEIEKAILKSDLGLNPSNDGAIIRLVVPELTEETRKTLVKNVKKTGEEAKVAVRSIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K K S L +DQMK+ E E+ + T VK D I AKEKE+
Sbjct: 133 KTANDKIKALKKDSDLSEDQMKKAEDEVQKKTDAVVKEIDAIIAAKEKEV 182
>gi|373454686|ref|ZP_09546550.1| ribosome recycling factor [Dialister succinatiphilus YIT 11850]
gi|371935549|gb|EHO63294.1| ribosome recycling factor [Dialister succinatiphilus YIT 11850]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I AL E T +RTG+A+ +LD I VE G + P+ +A V+V +++ L + P+D
Sbjct: 13 MDKSINALKSEFTSIRTGQANASLLDRIFVEYYGSRTPVTQVASVTVPEARMLVVQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ LKE+E AI+ S LGL P DG + AIP LT+E + + KVV K SE+ K ++R R
Sbjct: 73 SLLKEIEKAILQSDLGLVPMNDGNLIRMAIPQLTEERRKELVKVVNKKSEEAKVAVRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +KK S + KD +K E +I +LT K +K + + + K KEI
Sbjct: 133 RDGNVFLKKEEKNSDVSKDIIKDTEDKIQKLTDKKIKEVEAVTERKIKEI 182
>gi|257082024|ref|ZP_05576385.1| ribosome recycling factor [Enterococcus faecalis E1Sol]
gi|256990054|gb|EEU77356.1| ribosome recycling factor [Enterococcus faecalis E1Sol]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A L REL ++R GRA+ +LD I VE G P+N LA +++ +++ L I P+D
Sbjct: 13 MTKAEEGLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVLMITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N++ ++E AI S +G++P DG + IP LT+E + + K V K +E+ K ++R R
Sbjct: 73 NSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSKVAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KKA + +D+++ EK++ +LT +K+ D I KE+E+
Sbjct: 133 RDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQEL 182
>gi|407275718|ref|ZP_11104188.1| ribosome recycling factor [Rhodococcus sp. P14]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +RTGRA+PGM I+V+ G P+ +A ++V +++ + + PY+
Sbjct: 13 MEKAVTVAKDDLGSIRTGRANPGMFSRIVVDYYGAPTPVTQMASINVPEARMVVVKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI +S LG+NP DG + +IP LT+E + + K ED K S+R R
Sbjct: 73 SQLGPIETAIRNSDLGVNPTNDGSLIRISIPQLTEERRRELVKQAKAKGEDAKVSVRNVR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ + +K G + +D + R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAMEELHRIQKDGEA-GEDDVTRAEKELDKTTAKYVAQIDELVKHKEAELLE 184
>gi|210615979|ref|ZP_03290879.1| hypothetical protein CLONEX_03098 [Clostridium nexile DSM 1787]
gi|210149984|gb|EEA80993.1| hypothetical protein CLONEX_03098 [Clostridium nexile DSM 1787]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + +L EL +R GRA+P +LD + V+ G P+ +A +SV +++ + I P++
Sbjct: 14 MQKTLHSLDAELATIRAGRANPHILDKLTVDYYGSATPIQQVANISVPEARMIQIQPWEK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +KE+E AI++S +G+NP DG + P LT+E + + K V K E K ++R R
Sbjct: 74 SMVKEIEKAILTSDIGINPTNDGTVIRLVFPELTEERRKELVKDVKKKGEAAKVAVRNIR 133
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D KK GS + +D++K LE+E+ +LT KY+K D +AK KE+
Sbjct: 134 RDGNDAFKKLKGSDVSEDEIKGLEEELQKLTDKYIKEVDKSVEAKSKEV 182
>gi|163753790|ref|ZP_02160913.1| ribosome recycling factor (ribosome releasing factor) [Kordia
algicida OT-1]
gi|161326004|gb|EDP97330.1| ribosome recycling factor (ribosome releasing factor) [Kordia
algicida OT-1]
Length = 184
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 102/168 (60%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M++AI L+++L +R G+ASP ML ++V+ G + PL+ +A V+ D++T++I P++
Sbjct: 16 MDSAITHLTKQLLGIRAGKASPAMLSSVMVDYYGSQTPLSQVANVNSTDARTITIQPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E+E I+ + LG NP +G+ +I +P LT+E + + K +ED K IR +R
Sbjct: 76 SMIQEIEKGILVANLGFNPMNNGESVIINVPPLTEERRRELVKQSKAEAEDAKVGIRNAR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q+A +KK S D K E ++ LT YVK D+I KEKEI
Sbjct: 136 QEANKEIKKLDVS--DDLKKNAEIDVQALTDDYVKKIDEIFSVKEKEI 181
>gi|443490251|ref|YP_007368398.1| ribosome recycling factor Frr [Mycobacterium liflandii 128FXT]
gi|442582748|gb|AGC61891.1| ribosome recycling factor Frr [Mycobacterium liflandii 128FXT]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ ++ +RTGRA+PGM I+++ G P+ LA ++V +++ + I PY+
Sbjct: 13 MEKAVSVAREDMATIRTGRANPGMFSRIVIDYYGTHTPITQLASINVPEARMVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L +E AI +S LG+NP DG + A+P LT+E + + K E+ + S+R R
Sbjct: 73 NQLHAIETAIRNSDLGVNPTNDGTIIRVAVPQLTEERRRDLVKQAKHKGEEARVSVRNIR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ + +K G + +D++ R EK++D+ T +YV D++ K KE E+ E
Sbjct: 133 RKAMEELHRIRKDGEA-GEDEVARAEKDLDKSTHQYVAQVDELVKHKEGELLE 184
>gi|41409043|ref|NP_961879.1| ribosome recycling factor [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118463206|ref|YP_882906.1| ribosome recycling factor [Mycobacterium avium 104]
gi|254776160|ref|ZP_05217676.1| ribosome recycling factor [Mycobacterium avium subsp. avium ATCC
25291]
gi|417749437|ref|ZP_12397836.1| ribosome recycling factor [Mycobacterium avium subsp.
paratuberculosis S397]
gi|440778398|ref|ZP_20957157.1| ribosome recycling factor [Mycobacterium avium subsp.
paratuberculosis S5]
gi|47116995|sp|P61307.1|RRF_MYCPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166230799|sp|A0QJ18.1|RRF_MYCA1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|41397402|gb|AAS05262.1| Frr [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118164493|gb|ABK65390.1| ribosome recycling factor [Mycobacterium avium 104]
gi|336459068|gb|EGO38018.1| ribosome recycling factor [Mycobacterium avium subsp.
paratuberculosis S397]
gi|436721192|gb|ELP45359.1| ribosome recycling factor [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L+ +RTGRA+PGM I+++ G P+ LA ++V +++ + I PY+
Sbjct: 13 MEKAVAVARDDLSTIRTGRANPGMFSRIVIDYYGAATPITQLASINVPEARLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI +S LG+NP DG + A+P LT+E + + K ED K S+R R
Sbjct: 73 SQVGAIETAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQAKSKGEDAKVSVRNIR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ + +K G + +D++ R EK++D+ T +Y+ D++ K KE E+ E
Sbjct: 133 RKAMEELHRIRKDGEA-GEDEVGRAEKDLDKTTHQYITQIDELVKHKEGELLE 184
>gi|397676063|ref|YP_006517601.1| Ribosome-recycling factor [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|395396752|gb|AFN56079.1| Ribosome-recycling factor [Zymomonas mobilis subsp. mobilis ATCC
29191]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +L + + LRTGRAS +LD + V+ G MPLN +A VSV + + +++ +D
Sbjct: 13 MKGAVESLKSDFSGLRTGRASTSLLDPVTVDVYGANMPLNQVATVSVPEPRMITVQVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++ AI S+ LGLNP VDGQ L IP LT+E + + K+V + +E + ++R R
Sbjct: 73 SNVTPVDKAIRSAGLGLNPVVDGQMLRLPIPDLTEERRKELAKLVGQYAEKARIAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +K+ + + +D+ KR E E+ +LT K + D + KEKEI
Sbjct: 133 RDGNDQIKQDEKKNEISEDEKKRFENEVQKLTDKTIADIDALAVHKEKEI 182
>gi|374623047|ref|ZP_09695564.1| ribosome recycling factor [Ectothiorhodospira sp. PHS-1]
gi|373942165|gb|EHQ52710.1| ribosome recycling factor [Ectothiorhodospira sp. PHS-1]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 108/170 (63%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I +L +E+ K+RTGRA +LDH++VE G ++P+N +A V V DS+TL++ P++
Sbjct: 13 MGKSIDSLRQEMAKIRTGRAHTSLLDHVMVEYYGSEVPINQVANVGVEDSRTLTVTPWEQ 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI++S LGLNP G + +PALT+E + + KVV +E+ + +IR R
Sbjct: 73 PMVAKVEKAIMNSDLGLNPSSMGTVIRVPMPALTEERRKDLVKVVRHEAENARVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A + +K S+ +D+ ++ ++E+ +LT +Y+ D + KEKE+
Sbjct: 133 RDANNELKNLVKDKSISEDEDRKGQEEVQKLTDQYIAEVDRVLAEKEKEL 182
>gi|333991239|ref|YP_004523853.1| ribosome recycling factor Frr [Mycobacterium sp. JDM601]
gi|333487207|gb|AEF36599.1| ribosome recycling factor Frr [Mycobacterium sp. JDM601]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +RTGRA+PGM I+++ G P+ L ++V +++ + I PY+
Sbjct: 13 MEKAVAVAREDLATVRTGRANPGMFSRIVIDYYGSPTPITQLCSINVPEARLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI +S LGLNP DG + A+P LT+E + + K ED K S+R R
Sbjct: 73 SQLGAIETAIRNSDLGLNPSNDGSLIRVAVPQLTEERRKELVKQAKSKGEDAKVSVRNIR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ + +K G + +D++ R EK++D T++YV D++ K KE E+ E
Sbjct: 133 RKAMEELHRIRKDGEA-GEDEVGRAEKDLDRSTQQYVSQIDELVKHKEGELLE 184
>gi|227890626|ref|ZP_04008431.1| ribosome recycling factor, RRF [Lactobacillus salivarius ATCC
11741]
gi|301300274|ref|ZP_07206483.1| ribosome recycling factor [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|227867564|gb|EEJ74985.1| ribosome recycling factor, RRF [Lactobacillus salivarius ATCC
11741]
gi|300852115|gb|EFK79790.1| ribosome recycling factor [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 187
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L REL +R GRA+ +L+ I VE G PLN +A +SV +++ L + PYD ++LK +
Sbjct: 21 SLRRELGNIRAGRANASLLNRINVEYYGAPTPLNQMAQISVPEARVLLVTPYDKSSLKNI 80
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI++S LG+ P DG + IP LT+E + + K V SE K ++R R+ +D
Sbjct: 81 EHAIMASDLGIAPMNDGTAIRLVIPQLTEERRKELAKQVKAVSETGKVAVRNIRRDMMDA 140
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
+KKA L +D ++ LE + ++T + +K+ D I + KEKE+ EG
Sbjct: 141 LKKAQKNGDLTEDDLRDLENQAQKVTDESIKNIDKITEDKEKEVLEG 187
>gi|392330815|ref|ZP_10275430.1| ribosome recycling factor [Streptococcus canis FSL Z3-227]
gi|391418494|gb|EIQ81306.1| ribosome recycling factor [Streptococcus canis FSL Z3-227]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+LSRE +R GRA+ +LD I V+ G PLN LA ++V +++ L I+P+D +++K++
Sbjct: 19 SLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K SIR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKISIRNIRRDAMDD 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KK + +D++K LEK+I + T VK D + KEKE+
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKATDDAVKEIDRMTAEKEKEL 182
>gi|384209174|ref|YP_005594894.1| ribosome recycling factor [Brachyspira intermedia PWS/A]
gi|343386824|gb|AEM22314.1| ribosome recycling factor [Brachyspira intermedia PWS/A]
Length = 182
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 98/171 (57%), Gaps = 2/171 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +L +RTGRA+ +LD + VE G MPL + VS DS+T+ I P+D
Sbjct: 10 MEKAVSSLQNDLKGIRTGRANASILDGVKVEAYGSSMPLKQVGNVSTPDSRTIMIQPFDK 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI+ + LG NP DG + +P LTKE + + K V E+ K ++R R
Sbjct: 70 GLVSDIEKAILKADLGFNPFNDGGNIRIVVPELTKERREELKKGVRHRGEEAKIAVRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
+ D +KK ++ +D+ K EK+I T Y+K DD+ AKEKE++
Sbjct: 130 RDENDKIKKELKDKTITEDESKSQEKKIQNDTDSYIKKIDDMITAKEKELD 180
>gi|159901469|ref|YP_001547716.1| ribosome recycling factor [Herpetosiphon aurantiacus DSM 785]
gi|159894508|gb|ABX07588.1| ribosome recycling factor [Herpetosiphon aurantiacus DSM 785]
Length = 192
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I +L L +RTGRASP +++ + VE G +MPLN LA ++ +S+ ++I PYD
Sbjct: 20 MKKSIDSLRHTLGAVRTGRASPALVEDLKVEYYGSEMPLNQLANIATPESRMITIQPYDQ 79
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+K +E AI +S LG+NP DG+ + AIP LT+E + + K V ED K +IR R
Sbjct: 80 GAIKAIEKAIQNSELGINPSNDGRVIRLAIPQLTQERRKELVKQVKAKVEDGKVAIRNVR 139
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A D ++K ++ +D +R ++E+ +LT ++ K + I KE E+ E
Sbjct: 140 REAQDAIRKLQQDKAISEDDERRGQEELQKLTDRFQKEVETIGTTKEAEVME 191
>gi|379057983|ref|ZP_09848509.1| ribosome recycling factor [Serinicoccus profundi MCCC 1A05965]
Length = 188
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 96/172 (55%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ ++ +RTGRA PGM + V+ G PL LA + D++T+ I PYD
Sbjct: 16 MEKALEVAREDMASIRTGRAHPGMFSKLEVDYYGAPTPLQQLASFGIQDARTVLITPYDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++E A+ + LG NP DG + +P LT+E + K+ ED K ++R R
Sbjct: 76 SAMKDIEKALREADLGANPSNDGNAIRIVMPQLTEERRREYIKLAHSKGEDAKVTVRHVR 135
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D++ KA + +D R EKE++ LTK++V DDI K KE E+ E
Sbjct: 136 RHAKDVIDKAVKDGEIGEDDGSRGEKELEALTKRHVDVVDDILKHKEAELLE 187
>gi|335051776|ref|ZP_08544686.1| ribosome recycling factor [Propionibacterium sp. 409-HC1]
gi|342213275|ref|ZP_08706000.1| ribosome recycling factor [Propionibacterium sp. CC003-HC2]
gi|419421672|ref|ZP_13961900.1| ribosome recycling factor [Propionibacterium acnes PRP-38]
gi|422395354|ref|ZP_16475394.1| ribosome recycling factor [Propionibacterium acnes HL097PA1]
gi|422495235|ref|ZP_16571524.1| ribosome recycling factor [Propionibacterium acnes HL025PA1]
gi|313813385|gb|EFS51099.1| ribosome recycling factor [Propionibacterium acnes HL025PA1]
gi|327334225|gb|EGE75939.1| ribosome recycling factor [Propionibacterium acnes HL097PA1]
gi|333765847|gb|EGL43175.1| ribosome recycling factor [Propionibacterium sp. 409-HC1]
gi|340768819|gb|EGR91344.1| ribosome recycling factor [Propionibacterium sp. CC003-HC2]
gi|379978163|gb|EIA11488.1| ribosome recycling factor [Propionibacterium acnes PRP-38]
Length = 184
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +A+ E +RTGRA+P M + ++VE PL LA V +++T+ I P+D
Sbjct: 12 MGSAVDHAREEFAAIRTGRANPAMFNKLMVEYYDTPTPLQQLASFQVPEARTVLIAPFDK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI S LG+NP DG + +PALT+E + K+ +E+ + ++R R
Sbjct: 72 SCVNDVEKAIRDSDLGVNPSNDGNVVRCVLPALTEERRKEYIKMAKTKAEEGRIAVRNVR 131
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + D++KK + +D+M RLEKE+D++T+KYV+ D++ K+KE E+ E
Sbjct: 132 RASNDVVKKQEKDKEISEDEMTRLEKELDQVTRKYVEQIDELLKSKESELLE 183
>gi|374298555|ref|YP_005050194.1| Ribosome-recycling factor [Desulfovibrio africanus str. Walvis Bay]
gi|332551491|gb|EGJ48535.1| Ribosome-recycling factor [Desulfovibrio africanus str. Walvis Bay]
Length = 184
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + L RE +LRTGRAS +L+ I ++ G P++ +A V+ DS+T++I P+D
Sbjct: 12 MQKVVENLKREFGRLRTGRASTTLLEGINIDYYGSSTPISQVASVATPDSRTITIQPWDR 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI++S LGLNP DG+ + ++P LT+E + + K+ K +E+ K ++R R
Sbjct: 72 GSFGPIEKAIMTSDLGLNPVNDGKIIRISLPPLTEERRKDLVKLGKKYTEEGKVAVRNIR 131
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK ++ +D ++R + EI +LT KYV D+ KEKEI E
Sbjct: 132 RDGNDTLKKLEKDKTITEDDLRRGQDEIQKLTDKYVAKCDEALAVKEKEIME 183
>gi|220934336|ref|YP_002513235.1| ribosome recycling factor [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|254809540|sp|B8GQ53.1|RRF_THISH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|219995646|gb|ACL72248.1| ribosome recycling factor [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I +L EL K+RTGRA +LDH++VE G +P++ +A V+V D++TL++ P++
Sbjct: 13 MGKSIESLRNELAKIRTGRAHTSLLDHVMVEYYGSDVPISQVANVNVEDARTLTVTPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI++S LGLNP G + +PALT+E + + KVV +E+ + +IR R
Sbjct: 73 TMVSKVEKAIMTSDLGLNPSSMGTVIRVPMPALTEERRRDLVKVVRGEAENARVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + +K G + +D +R + EI +LT +++ D + KEKE+ E
Sbjct: 133 RDANNALKALVKGKEISEDDERRAQDEIQKLTDSHIEEVDKVLAEKEKELME 184
>gi|219847470|ref|YP_002461903.1| ribosome recycling factor [Chloroflexus aggregans DSM 9485]
gi|254809501|sp|B8G461.1|RRF_CHLAD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|219541729|gb|ACL23467.1| ribosome recycling factor [Chloroflexus aggregans DSM 9485]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
++ A AL L +RTGRAS +++H+ VE G MPLN LA +SV + + + I PYD
Sbjct: 13 LKKATEALRHHLASIRTGRASAALVEHLHVEAYGTNMPLNQLANISVPEPRMIIIQPYDT 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+K +E AI S LGLNP DG+ + +P LT+E + + K+V E+VK S+R R
Sbjct: 73 GMIKAIEKAIQQSDLGLNPSNDGRIIRLPVPPLTEERRRELVKMVRHRVEEVKVSVRNQR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK A + +D++ R ++ I +LT + + D I KE E+
Sbjct: 133 RDAIDDLKKLEADKLISEDELHRGQERIQQLTDRCNRELDQIGAEKEAEV 182
>gi|34397824|gb|AAQ66885.1| ribosome recycling factor [Porphyromonas gingivalis W83]
Length = 173
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L +L+ +R G+ASP +LD I+V G PL +A ++ D+KT+ + P++
Sbjct: 1 MEKAVEYLDEQLSHVRAGKASPKLLDGIMVMYYGNATPLTQVASINTPDAKTIVVTPWER 60
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++E AI+ SPLG+ P +G+ + +P LT+E + + K +ED K S+R +R
Sbjct: 61 SLIKDIEKAIMDSPLGITPENNGELIRLGLPPLTEERRRQLVKQTKGDAEDAKVSVRNAR 120
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK+ P+D K E E+ ++ +Y+K D++ KEKEI
Sbjct: 121 RDAIDAIKKSVKTDGTPEDVAKDAEAEMQKVHDRYIKKIDELFAEKEKEI 170
>gi|257084575|ref|ZP_05578936.1| ribosome recycling factor [Enterococcus faecalis Fly1]
gi|307287723|ref|ZP_07567766.1| ribosome recycling factor [Enterococcus faecalis TX0109]
gi|422703701|ref|ZP_16761521.1| ribosome recycling factor [Enterococcus faecalis TX1302]
gi|256992605|gb|EEU79907.1| ribosome recycling factor [Enterococcus faecalis Fly1]
gi|306501461|gb|EFM70764.1| ribosome recycling factor [Enterococcus faecalis TX0109]
gi|315164822|gb|EFU08839.1| ribosome recycling factor [Enterococcus faecalis TX1302]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A +L REL ++R GRA+ +LD I VE G P+N LA +++ +++ L I P+D
Sbjct: 13 MTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVLMITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N++ ++E AI S +G++P DG + IP LT+E + + K V K +E+ K ++R R
Sbjct: 73 NSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSKIAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KKA + +D+++ EK++ +LT +K+ D I KE+E+
Sbjct: 133 RDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQEL 182
>gi|90022239|ref|YP_528066.1| ribosome recycling factor [Saccharophagus degradans 2-40]
gi|89951839|gb|ABD81854.1| ribosome recycling factor [Saccharophagus degradans 2-40]
Length = 187
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL K+RTGRA P +LD ++V G PL+ +A V+VLD++TLSI+P++
Sbjct: 15 MSRAIEALGTHFNKIRTGRAHPSILDGVMVSYYGSATPLSQVANVTVLDARTLSISPWEK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + E+E AI+ S LGLNP G + +P LT+E + K +E + SIR R
Sbjct: 75 NIVPEIEKAIMKSDLGLNPVTTGDLIRVPMPMLTEETRKGYIKRARAEAESARVSIRNVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ AL +K + +D +R EI ++T KYV D AKEK++ E
Sbjct: 135 RDALAEVKALVKDKEISEDDERRAADEIQQITNKYVAEVDKALSAKEKDLME 186
>gi|411121008|ref|ZP_11393380.1| ribosome recycling factor [Oscillatoriales cyanobacterium JSC-12]
gi|410709677|gb|EKQ67192.1| ribosome recycling factor [Oscillatoriales cyanobacterium JSC-12]
Length = 182
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ A R +RTGRA+P +LD I VE G PL LA +S D+ T++I P+D
Sbjct: 10 MHKSVEATQRSFNTIRTGRANPALLDRISVEYYGAPTPLKSLANISTPDASTIAIQPFDR 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L +E AI S LGL P DG + IP LT + + + K+ AK +E+ K SIR R
Sbjct: 70 SSLSLIEKAIQMSDLGLTPNNDGSTIRINIPPLTSDRRKELVKLAAKFAEEGKVSIRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K S + +D+ + L+ ++ +LT KY+ +++ KEK+I
Sbjct: 130 RDAVDAVRKQEKNSDISEDESRDLQDKLQKLTDKYIAKVEELLAEKEKDI 179
>gi|383765068|ref|YP_005444050.1| ribosome-recycling factor [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381385336|dbj|BAM02153.1| ribosome-recycling factor [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 103/171 (60%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI AL +L +RTGRASP +++HI V+ GV PL LA +SV +++ + I PY
Sbjct: 13 MDKAIEALRHDLMTIRTGRASPALVEHIPVDYYGVPTPLQQLATISVPEAQQILIRPYTR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
+ +E AI S LGL P DGQ + IP L +E + + K+V K E+ + ++IR
Sbjct: 73 GDIPAIEKAIAKSDLGLTPTNDGQVIRLTIPPLNEERRRELTKLVNKRGEEARVAIRNIR 132
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
R K L ++K S + +D+ KR E++I ELT ++++ D+I K K+ EI
Sbjct: 133 RDANKDLAELEKE-SLISEDERKRAEEKIQELTDQHIRRVDEIVKEKDAEI 182
>gi|406915580|gb|EKD54648.1| hypothetical protein ACD_60C00060G0016 [uncultured bacterium]
Length = 184
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I A E++K+RTGRA P +L+H+ V+ G + PL+ +A +++ D++TL I P++
Sbjct: 12 MRKSIDAFKHEMSKMRTGRAHPSLLEHVRVDYYGTQTPLSQVANITIGDARTLVITPWEK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+E AI++S LGLNP + + +PALT+E + + KVV +E+ + SIR +R
Sbjct: 72 RMTSVIEKAIMTSDLGLNPSTSSEVIRVPLPALTEERRKDLIKVVRNEAENARVSIRNAR 131
Query: 121 QKALDMMKKAG--SSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A + +K+A + +D+ +R+ + +LT K++ + + AKEK++
Sbjct: 132 RDANNFIKEASKKKEVAEDEERRMTDAVQKLTDKFIAEVEQLLAAKEKDL 181
>gi|167766543|ref|ZP_02438596.1| hypothetical protein CLOSS21_01049 [Clostridium sp. SS2/1]
gi|317498945|ref|ZP_07957228.1| ribosome recycling factor [Lachnospiraceae bacterium 5_1_63FAA]
gi|429762653|ref|ZP_19295039.1| ribosome recycling factor [Anaerostipes hadrus DSM 3319]
gi|167711666|gb|EDS22245.1| ribosome recycling factor [Clostridium sp. SS2/1]
gi|291558581|emb|CBL37381.1| ribosome recycling factor [butyrate-producing bacterium SSC/2]
gi|316893778|gb|EFV15977.1| ribosome recycling factor [Lachnospiraceae bacterium 5_1_63FAA]
gi|429181287|gb|EKY22459.1| ribosome recycling factor [Anaerostipes hadrus DSM 3319]
Length = 181
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ +++ + +R GRA+P +LD + V+ GV P+ + VSV +++T+ I P++P
Sbjct: 9 MQKSLDSMANDFMTIRAGRANPHVLDKVKVDYYGVATPVAQVGNVSVPEARTIMIQPWEP 68
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LKE+E AI+ S +G+ P DG+ + P LT+E + + K V K E+ K ++R R
Sbjct: 69 NLLKEIEKAILVSDIGITPTNDGKAIRLNFPDLTEERRKELAKDVKKRGEEAKVAVRNIR 128
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK + L DQ K E ++ ++T KY+K D+ AK KEI
Sbjct: 129 RDANDFVKKQNKAGDLNDDQAKDEEDKVQKMTDKYIKQIDEAVDAKSKEI 178
>gi|424760598|ref|ZP_18188210.1| ribosome recycling factor [Enterococcus faecalis R508]
gi|402403291|gb|EJV35970.1| ribosome recycling factor [Enterococcus faecalis R508]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A +L REL ++R GRA+ +LD I VE G P+N LA +++ +++ L I P+D
Sbjct: 13 MTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVLMITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N++ ++E AI S +G++P DG + IP LT+E + + K V K +E+ K ++R R
Sbjct: 73 NSIADIEKAIQMSDIGISPTNDGNVVRLVIPQLTEERRKELAKDVKKEAENSKVAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KKA + +D+++ EK++ +LT +K+ D I KE+E+
Sbjct: 133 RDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQEL 182
>gi|317051930|ref|YP_004113046.1| ribosome recycling factor [Desulfurispirillum indicum S5]
gi|316947014|gb|ADU66490.1| ribosome recycling factor [Desulfurispirillum indicum S5]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A ++ + LRTGRAS +LD++ V+ G PL V++ D+ T+SI P++P
Sbjct: 13 MQKAVEATRKDFSTLRTGRASTALLDNVKVDYYGTPTPLKQAGSVTIPDATTISIQPWEP 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AIV++ LG+ P DGQ + +IP LT++ + + + V K +ED + ++R R
Sbjct: 73 HMLPAIEKAIVAANLGVTPSNDGQMIRISIPPLTEDRRKELTRQVKKFAEDGRIAVRNIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +K + + +D+ KR ++E+ ++T +VK+ D++ +AKEKE+
Sbjct: 133 RFGNDSVKALEKDKLITEDEAKRAQEEVQKITDGFVKTIDEMAEAKEKEL 182
>gi|221632994|ref|YP_002522217.1| ribosome recycling factor [Thermomicrobium roseum DSM 5159]
gi|254809539|sp|B9L003.1|RRF_THERP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|221155498|gb|ACM04625.1| ribosome recycling factor [Thermomicrobium roseum DSM 5159]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I L +EL +R GRA+P +L+H+ V G PLN LA +S +++ L + +D
Sbjct: 13 MKKSIELLRQELAGIRAGRAAPSLLEHLEVNYYGTPTPLNQLATISAPEARLLVVQVWDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + +E AI S LGLNP VDGQ L +P LT+E + + K+V + E+ K +IR R
Sbjct: 73 NAVSAVEKAIRQSELGLNPSVDGQTLRIQLPPLTEERRRQLVKLVHEEVEETKVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ AL +K+ + +D +R E+ + +LT +Y+ AD + K KE +I E
Sbjct: 133 RDALADIKELLKNKEISEDDERRAEQRLQDLTNRYIAEADKLGKQKEHDILE 184
>gi|398814384|ref|ZP_10573065.1| ribosome recycling factor [Brevibacillus sp. BC25]
gi|398036653|gb|EJL29862.1| ribosome recycling factor [Brevibacillus sp. BC25]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL ++++ LR GRA+P MLD + V+ G P++ LA +SV + + L+I P+D
Sbjct: 13 MNKAINALKKDMSSLRAGRANPAMLDRVTVDYYGTPTPISQLANISVPEPRMLTIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LKE++ A+ S LG++P DG + IP LT+E + + K+ K E+ K +IR R
Sbjct: 73 TALKEIDRALQQSDLGISPSNDGVIIRLMIPPLTEERRKELVKLAGKGGEEAKVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK +++ +D +R ++ I + T K++ D + K KEK+I E
Sbjct: 133 RDANDEIKKLEKAATISEDDSRRHQETIQKTTDKFIAEVDKVVKDKEKDILE 184
>gi|427410888|ref|ZP_18901090.1| ribosome-recycling factor [Sphingobium yanoikuyae ATCC 51230]
gi|425710876|gb|EKU73896.1| ribosome-recycling factor [Sphingobium yanoikuyae ATCC 51230]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL +LT LRTGRA+ +LD ++V G MPLN +A VS + + LS+ +D
Sbjct: 13 MAGAIEALKGDLTGLRTGRANVQLLDPVMVTVYGANMPLNQVATVSAPEPRMLSVQVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + AI S+ LGLNP VDGQ L IP LT+E + + K+ +K +E + ++R R
Sbjct: 73 ANVGPCDKAIRSAGLGLNPIVDGQTLRLPIPDLTEERRKELAKLASKYAEGARVAVRNVR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +K + + +D+ KRLE E+ +LT + D AKEKEI
Sbjct: 133 RDGMDSLKTDEKKGEISEDERKRLETEVQKLTDATIVDIDAAASAKEKEI 182
>gi|190360296|sp|Q21HH5.2|RRF_SACD2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL K+RTGRA P +LD ++V G PL+ +A V+VLD++TLSI+P++
Sbjct: 13 MSRAIEALGTHFNKIRTGRAHPSILDGVMVSYYGSATPLSQVANVTVLDARTLSISPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + E+E AI+ S LGLNP G + +P LT+E + K +E + SIR R
Sbjct: 73 NIVPEIEKAIMKSDLGLNPVTTGDLIRVPMPMLTEETRKGYIKRARAEAESARVSIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ AL +K + +D +R EI ++T KYV D AKEK++ E
Sbjct: 133 RDALAEVKALVKDKEISEDDERRAADEIQQITNKYVAEVDKALSAKEKDLME 184
>gi|90961538|ref|YP_535454.1| ribosome recycling factor [Lactobacillus salivarius UCC118]
gi|417788084|ref|ZP_12435767.1| ribosome recycling factor [Lactobacillus salivarius NIAS840]
gi|417810473|ref|ZP_12457152.1| ribosome recycling factor [Lactobacillus salivarius GJ-24]
gi|418961172|ref|ZP_13513059.1| ribosome recycling factor [Lactobacillus salivarius SMXD51]
gi|122449175|sp|Q1WUG4.1|RRF_LACS1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|90820732|gb|ABD99371.1| Ribosome Recycling Factor, RRF [Lactobacillus salivarius UCC118]
gi|334308261|gb|EGL99247.1| ribosome recycling factor [Lactobacillus salivarius NIAS840]
gi|335349269|gb|EGM50769.1| ribosome recycling factor [Lactobacillus salivarius GJ-24]
gi|380344839|gb|EIA33185.1| ribosome recycling factor [Lactobacillus salivarius SMXD51]
Length = 187
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L REL +R GRA+ +L+ I VE G PLN +A +SV +++ L + PYD +LK +
Sbjct: 21 SLRRELGNIRAGRANASLLNRINVEYYGAPTPLNQMAQISVPEARVLLVTPYDKTSLKNI 80
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI++S LG+ P DG + IP LT+E + + K V SE K ++R R+ +D
Sbjct: 81 EHAIMASDLGIAPMNDGTAIRLVIPQLTEERRKELAKQVKAVSETGKVAVRNIRRDMMDA 140
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
+KKA L +D ++ LE + ++T + +K+ D I + KEKE+ EG
Sbjct: 141 LKKAQKNGDLTEDDLRDLENQAQKVTDESIKNIDKITEDKEKEVLEG 187
>gi|161579528|ref|NP_905986.2| ribosome recycling factor [Porphyromonas gingivalis W83]
gi|334145979|ref|YP_004508906.1| ribosome recycling factor [Porphyromonas gingivalis TDC60]
gi|419970390|ref|ZP_14485887.1| ribosome recycling factor [Porphyromonas gingivalis W50]
gi|39932026|sp|Q7MTP6.1|RRF_PORGI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|333803133|dbj|BAK24340.1| ribosome recycling factor [Porphyromonas gingivalis TDC60]
gi|392610970|gb|EIW93727.1| ribosome recycling factor [Porphyromonas gingivalis W50]
Length = 186
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L +L+ +R G+ASP +LD I+V G PL +A ++ D+KT+ + P++
Sbjct: 14 MEKAVEYLDEQLSHVRAGKASPKLLDGIMVMYYGNATPLTQVASINTPDAKTIVVTPWER 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++E AI+ SPLG+ P +G+ + +P LT+E + + K +ED K S+R +R
Sbjct: 74 SLIKDIEKAIMDSPLGITPENNGELIRLGLPPLTEERRRQLVKQTKGDAEDAKVSVRNAR 133
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK+ P+D K E E+ ++ +Y+K D++ KEKEI
Sbjct: 134 RDAIDAIKKSVKTDGTPEDVAKDAEAEMQKVHDRYIKKIDELFAEKEKEI 183
>gi|381201231|ref|ZP_09908360.1| ribosome recycling factor [Sphingobium yanoikuyae XLDN2-5]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL +LT LRTGRA+ +LD ++V G MPLN +A VS + + LS+ +D
Sbjct: 13 MAGAIEALKGDLTGLRTGRANVQLLDPVMVTVYGANMPLNQVATVSAPEPRMLSVQVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + AI S+ LGLNP VDGQ L IP LT+E + + K+ +K +E + ++R R
Sbjct: 73 ANVGPCDKAIRSAGLGLNPIVDGQTLRLPIPDLTEERRKELAKLASKYAEGARVAVRNVR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +K + + +D+ KRLE E+ +LT + D AKEKEI
Sbjct: 133 RDGMDNLKTDEKKGEISEDERKRLETEVQKLTDATIVDIDAAASAKEKEI 182
>gi|334344978|ref|YP_004553530.1| Ribosome-recycling factor [Sphingobium chlorophenolicum L-1]
gi|334101600|gb|AEG49024.1| Ribosome-recycling factor [Sphingobium chlorophenolicum L-1]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ +L +L LRTGRA+ +LD + VE G MPLN +A VS + + LS+ +D
Sbjct: 13 MHGAVESLKGDLAGLRTGRANIQLLDPVTVEVYGAHMPLNQVATVSAPEPRMLSVQVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + AI S+ LGLNP VDGQ L IP LT+E + + K+ +K +E + ++R R
Sbjct: 73 TNVGPCDKAIRSAGLGLNPIVDGQTLRLPIPDLTEERRKELAKLASKYAEGARIAVRNVR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +K + + +D+ KRLE E+ LT + D + AKEKEI
Sbjct: 133 RDGMDSLKVDEKKGEISEDERKRLETEVQRLTDSTIADIDAVTAAKEKEI 182
>gi|167746791|ref|ZP_02418918.1| hypothetical protein ANACAC_01503 [Anaerostipes caccae DSM 14662]
gi|317471594|ref|ZP_07930938.1| ribosome recycling protein [Anaerostipes sp. 3_2_56FAA]
gi|167653751|gb|EDR97880.1| ribosome recycling factor [Anaerostipes caccae DSM 14662]
gi|316900909|gb|EFV22879.1| ribosome recycling protein [Anaerostipes sp. 3_2_56FAA]
Length = 181
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + ++ E +R GRA+P +LD + V+ GV P+ + VSV +++T+ I P++P
Sbjct: 9 MQKSYENMTSEFMAIRAGRANPHVLDKVTVDYYGVPTPIQQVGNVSVPEARTILIQPWEP 68
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L E+E AI+ S +G+ P DG + P LT+E + + K + K E K ++R R
Sbjct: 69 NLLGEIEKAIMMSDIGITPNNDGSAIRLNFPELTEERRKDLAKDIKKRGETTKVAVRNIR 128
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK + L DQ+K E E+ +LT Y+K DD +AK KEI
Sbjct: 129 RDANDELKKMNKANELNDDQLKDQESEVQKLTDVYIKKIDDAVEAKSKEI 178
>gi|452946802|gb|EME52295.1| ribosome recycling factor [Rhodococcus ruber BKS 20-38]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +RTGRA+PGM I+V+ G P+ +A ++V +++ + + PY+
Sbjct: 13 MEKAVTVAKDDLGSIRTGRANPGMFSRIVVDYYGAPTPVTQMASINVPEARMVVVKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI +S LG+NP DG + +IP LT+E + + K ED K S+R R
Sbjct: 73 SQLGPIETAIRNSDLGVNPTNDGSLIRISIPQLTEERRRELVKQAKAKGEDAKVSVRNVR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ + +K G + +D + R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAMEELHRIQKDGEA-GEDDVTRAEKELDKTTAKYVAHIDELVKHKEAELLE 184
>gi|338707137|ref|YP_004661338.1| ribosome recycling factor [Zymomonas mobilis subsp. pomaceae ATCC
29192]
gi|336293941|gb|AEI37048.1| ribosome recycling factor [Zymomonas mobilis subsp. pomaceae ATCC
29192]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +L + LRTGRAS +LD + V+ G MPLN +A VSV + + +++ +D
Sbjct: 13 MKGALESLRSDFGGLRTGRASTSLLDPVTVDVYGANMPLNQVATVSVPEPRMITVQVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++ AI S+ LGLNP VDGQ L IP LT+E + + K+V + SE + ++R R
Sbjct: 73 SNVTPVDKAIRSAGLGLNPIVDGQMLRLPIPDLTEERRKELAKLVGQYSEKARIAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +K+ + + +D+ KR E EI ++T K + D + KEKEI
Sbjct: 133 RDGNDHLKQDEKKNEISEDEKKRFENEIQKMTDKTIADIDALAAHKEKEI 182
>gi|125973518|ref|YP_001037428.1| ribosome recycling factor [Clostridium thermocellum ATCC 27405]
gi|190360240|sp|A3DE56.1|RRF_CLOTH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|125713743|gb|ABN52235.1| ribosome recycling factor [Clostridium thermocellum ATCC 27405]
Length = 183
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + L EL +R GRA+ +LD I V+ GV P+N L +SV + + + I P+D
Sbjct: 11 MKKTVSVLKDELNTVRAGRANAAILDRITVDYYGVPTPINQLGTISVPEPRVIVIQPWDA 70
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LKE+E I S +G+NP DG+ + P LT+E + + K+ K ED K +IR R
Sbjct: 71 QILKEIEKEIQKSDIGINPNNDGKVIRLVFPPLTEERRKELTKLAKKYGEDAKVAIRSIR 130
Query: 121 QKALD---MMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ ++ MKK G + +D +K EK+I LT KY+ D + + KEKEI E
Sbjct: 131 RDGIEKKKAMKKNG-EITEDDLKSAEKDIQNLTDKYIAEIDKLIEIKEKEILE 182
>gi|89054949|ref|YP_510400.1| ribosome recycling factor [Jannaschia sp. CCS1]
gi|88864498|gb|ABD55375.1| ribosome recycling factor [Jannaschia sp. CCS1]
Length = 243
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 100/168 (59%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI +L E LRTGRAS ML+ ++V+ G P+N + V+V + + +++N +D
Sbjct: 75 MEGAIASLRTEFASLRTGRASASMLEPVMVDAYGAMTPINQVGTVNVPEPRMVTVNVWDK 134
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI S LG+NP+++G ++ IP L +E + + KV +E+ + ++R R
Sbjct: 135 GLVNKVEKAIRESGLGINPQMNGTIIMLPIPELNEERRRELTKVAGTYAENARVAVRNVR 194
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA +S +D K E + ELT ++K DD + K++EI
Sbjct: 195 RDGMDQIKKADTS--EDDAKFWEGAVQELTDTFIKRVDDQLETKQEEI 240
>gi|46447510|ref|YP_008875.1| ribosome recycling factor (ribosome releasing factor) [Candidatus
Protochlamydia amoebophila UWE25]
gi|60390257|sp|Q6M9Z9.1|RRF_PARUW RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|46401151|emb|CAF24600.1| putative ribosome recycling factor (ribosome releasing factor)
[Candidatus Protochlamydia amoebophila UWE25]
Length = 183
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 100/171 (58%), Gaps = 2/171 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI L +L +RTGRA+PGM++H+++E G M L +A +S +++ L I P+DP
Sbjct: 11 MITAIEHLKNDLKNIRTGRANPGMVEHVMIEVYGSPMRLKDVASISAPEARQLLITPFDP 70
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ I + LGL P VD + IP +T+E + M K+ + E K SIR R
Sbjct: 71 QNAGSIGKGIEKANLGLMPIVDAHSVRIKIPPMTEEIRKKMAKICHEEKEKTKVSIRNIR 130
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
+ A ++ +K S + +D +K+LEK I ELT K+ K AD+I + KEKEI+
Sbjct: 131 RDANELARKQKSEGIIAEDVLKKLEKNIQELTDKFCKEADEIAEKKEKEIS 181
>gi|91775880|ref|YP_545636.1| ribosome recycling factor [Methylobacillus flagellatus KT]
gi|123254405|sp|Q1H142.1|RRF_METFK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|91709867|gb|ABE49795.1| ribosome recycling factor [Methylobacillus flagellatus KT]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I AL +L+K+RTGRA G+LDH+ VE G + +N +A VS+ D++TL++ Y+
Sbjct: 13 MQKSIEALKADLSKVRTGRAHTGLLDHVQVEYYGSMVAINQVASVSLGDARTLNVQAYEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N ++E AI + LGLNP +G + +P LT+E + + KVV +E+ K +IR R
Sbjct: 73 NMTPKVEKAIRDADLGLNPATNGDIIRVPMPMLTEERRRDLVKVVRSEAENAKVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK + +D +R + E+ +LT K+V D + + KE E+
Sbjct: 133 RDANDALKKLVKDKEISEDDERRAQDEVQKLTDKFVAEIDKLLQTKEAEL 182
>gi|366089281|ref|ZP_09455754.1| ribosome recycling factor [Lactobacillus acidipiscis KCTC 13900]
Length = 187
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 105/167 (62%), Gaps = 2/167 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
AL REL +R GRA+ +L+ I VE GV PLN +A ++V +++ L + PYD ++LKE+
Sbjct: 21 ALQRELGNIRAGRANASLLNRINVEYYGVDTPLNQMAQITVPEARVLLVTPYDKSSLKEV 80
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI++S LG++P DG + IP LT+E + + K V +ED K ++R R+ ++
Sbjct: 81 ERAILASDLGISPANDGSAIRLVIPQLTEERRKELAKQVKAKAEDGKVAVRNIRRDMMEQ 140
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
+KK+ L +D++ LE++ ++T + +K+ + + KEKE+ EG
Sbjct: 141 LKKSEKDGDLNEDELHALEEQAQKVTDESIKNLEALADDKEKEVLEG 187
>gi|85716993|ref|ZP_01047956.1| ribosome recycling factor [Nitrobacter sp. Nb-311A]
gi|85696195|gb|EAQ34090.1| ribosome recycling factor [Nitrobacter sp. Nb-311A]
Length = 187
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A +L EL LRTGRAS MLD + V+ G MPLN +A +SV + + LS+ +D
Sbjct: 15 MQGATQSLKHELGGLRTGRASASMLDPVQVDAYGSHMPLNQVATISVPEPRLLSVQVWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AIV S LGL+P +GQ L IP L +E + + KV K +E K ++R R
Sbjct: 75 SMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEAAKVAVRHVR 134
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD +KK + + +D KRL E+ + T + D + KEKEI
Sbjct: 135 RDGLDTLKKLEKTHEISEDDEKRLANEVQKATDGVISEIDQLLAGKEKEI 184
>gi|322420123|ref|YP_004199346.1| ribosome recycling factor [Geobacter sp. M18]
gi|320126510|gb|ADW14070.1| ribosome recycling factor [Geobacter sp. M18]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 109/172 (63%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I +L ++ K+RTGRAS +LD I V++ G PLN +A ++V +++T++I P+D
Sbjct: 13 MDKTIESLRKDYQKVRTGRASTSLLDEIKVDSYGNLSPLNQVATLAVPEARTITIQPWDS 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ +E AI++S LGLNP DG+ + +P LT+E + + K + + +E+ K ++R R
Sbjct: 73 KMIQPIEKAIMNSNLGLNPANDGKMIRLTLPPLTEERRKDIVKQLKRDAEESKVALRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D +KK + +D++KR EK++ + T +V D++ KEKE+ E
Sbjct: 133 RDAIDQLKKLEKDKQISEDELKRAEKDVQDSTNAHVAKIDEVLVHKEKEVLE 184
>gi|88812380|ref|ZP_01127630.1| Ribosome recycling factor [Nitrococcus mobilis Nb-231]
gi|88790387|gb|EAR21504.1| Ribosome recycling factor [Nitrococcus mobilis Nb-231]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 98/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I AL+ E K+RTGRA +LDHI V G KMPLN +A V+V D +TLS+ P++
Sbjct: 13 MGKSIEALNHEFHKIRTGRAHTSLLDHITVTYYGAKMPLNQVASVTVSDPRTLSVTPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+ S LGL P G + +P LT+E + + +VV +E + +IR R
Sbjct: 73 GMIPVVEKAILESDLGLTPNTAGGVIRIPLPPLTEERRRELIRVVKHETEQARIAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A +K + +D KR E +I +LT K++ D + AKEKE+ E
Sbjct: 133 RDANSALKARLKDKEITEDDEKRAEDDIQKLTDKHISEVDSLLVAKEKELME 184
>gi|253999117|ref|YP_003051180.1| ribosome recycling factor [Methylovorus glucosetrophus SIP3-4]
gi|313201218|ref|YP_004039876.1| ribosome recycling factor [Methylovorus sp. MP688]
gi|253985796|gb|ACT50653.1| ribosome recycling factor [Methylovorus glucosetrophus SIP3-4]
gi|312440534|gb|ADQ84640.1| ribosome recycling factor [Methylovorus sp. MP688]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ +L +L K+RTGRA G+LDH++VE G + +N +A V++ D++T+++ PY+
Sbjct: 13 MQKSLESLKSDLGKVRTGRAHTGLLDHVMVEYYGSMVAVNQVANVTLGDARTINVQPYEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + ++E AI LGLNP +G + +P LT+E + + KVV E+ K +IR R
Sbjct: 73 NMVAKIEKAIRDGDLGLNPATNGDVIRVPMPMLTEERRRDLIKVVRTEGENAKVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK + +D +R++ E+ +LT ++V D + + KE ++
Sbjct: 133 RDANDQLKKLTKDKEISEDDERRMQDEVQKLTDRFVAEVDKLLQVKEADL 182
>gi|28198252|ref|NP_778566.1| ribosome recycling factor [Xylella fastidiosa Temecula1]
gi|386084410|ref|YP_006000692.1| ribosome recycling factor [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|417558397|ref|ZP_12209376.1| Ribosome recycling factor Frr [Xylella fastidiosa EB92.1]
gi|32129996|sp|Q87EH6.1|RRF_XYLFT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|28056322|gb|AAO28215.1| ribosome recycling factor [Xylella fastidiosa Temecula1]
gi|307579357|gb|ADN63326.1| ribosome recycling factor [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|338179014|gb|EGO81981.1| Ribosome recycling factor Frr [Xylella fastidiosa EB92.1]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 103/172 (59%), Gaps = 6/172 (3%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I AL L +RTGRASP +LD I ++ G PLN +A +SV + ++L I +D
Sbjct: 13 MTKSIDALRNSLASVRTGRASPSLLDGIKIKAYGTDTPLNQVASISVSEGRSLVITVFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N K++E AI +S LGL P V G + +P LT+E + + KVV ED K +IR R
Sbjct: 73 NMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHSEGEDTKVAIRNIR 132
Query: 121 ----QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q+ DM+K + +D+++ E++I +LT K +KS D++ K+KE+E+
Sbjct: 133 RDANQQIKDMLK--SKEITEDEVRHGEEDIQKLTDKAIKSVDEVVKSKEQEL 182
>gi|258545341|ref|ZP_05705575.1| ribosome recycling factor [Cardiobacterium hominis ATCC 15826]
gi|258519444|gb|EEV88303.1| ribosome recycling factor [Cardiobacterium hominis ATCC 15826]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ +L EL+K+RTGRA+ +LDH+ VE G +PL+ A V+V D ++L+I ++
Sbjct: 13 MEKSVKSLEHELSKIRTGRANVSLLDHVQVEYYGSMVPLSQAANVTVTDYRSLTIQVWER 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + +E A+++S LGL P GQ + +P LT+E + + K+V E K +IR R
Sbjct: 73 NMVAVIEKALINSDLGLTPNTAGQNIHINLPPLTEERRKDLVKIVRNEGEQAKVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A +K+ +D +R E EI +LT KYV+ D + KEKE+ E
Sbjct: 133 RDANQSVKQLVTDKQASEDDERRAEAEIQKLTDKYVEQVDKVLAEKEKELME 184
>gi|404370933|ref|ZP_10976248.1| ribosome-recycling factor [Clostridium sp. 7_2_43FAA]
gi|226912945|gb|EEH98146.1| ribosome-recycling factor [Clostridium sp. 7_2_43FAA]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I L +L+ +R GRA+P MLD I V+ G PLN +A +S + + L I+P++
Sbjct: 13 MKKTISVLKSDLSTMRAGRANPTMLDRIQVDYYGSPCPLNQVANISAPEPRVLVISPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +KE+E AI++S LG+NP DG + +P LT+E + + K V KT E+ K ++R R
Sbjct: 73 SLMKEIEKAILTSDLGINPSNDGSVIRLVVPELTEETRRNLVKNVKKTGEEAKVALRSIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++A D +K K + +D++K E+++ ++ +VK D I AKEKEI
Sbjct: 133 REANDKIKALKKDGEITEDELKNSEEKVQKIIDSFVKEVDTIIVAKEKEI 182
>gi|116792122|gb|ABK26242.1| unknown [Picea sitchensis]
Length = 173
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME + + +RTGRASP LD + VE G + L LA VSV D TL + PYD
Sbjct: 1 MEKTLETIKTNFNSIRTGRASPAFLDRVEVEYYGSPVNLKSLAQVSVPDGGTLLVQPYDK 60
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK +E AI S LGL P DG + +IP LT E + + KVVAK +E+ K +IR R
Sbjct: 61 SSLKSIEKAISKSNLGLTPSNDGNVIRLSIPQLTSERRKELLKVVAKIAEEGKIAIRNIR 120
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+ +K L +D +K L ++ ++T +++K D + K KEKE+
Sbjct: 121 RDAIKAYEKLEKEKKLSEDNVKDLSGDLQKVTDEFIKKVDSLYKQKEKEL 170
>gi|108798972|ref|YP_639169.1| ribosome recycling factor [Mycobacterium sp. MCS]
gi|119868087|ref|YP_938039.1| ribosome recycling factor [Mycobacterium sp. KMS]
gi|126434572|ref|YP_001070263.1| ribosome recycling factor [Mycobacterium sp. JLS]
gi|123070322|sp|Q1BAH1.1|RRF_MYCSS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166230802|sp|A3PXZ5.1|RRF_MYCSJ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166230803|sp|A1UEJ1.1|RRF_MYCSK RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|108769391|gb|ABG08113.1| ribosome recycling factor [Mycobacterium sp. MCS]
gi|119694176|gb|ABL91249.1| ribosome recycling factor [Mycobacterium sp. KMS]
gi|126234372|gb|ABN97772.1| ribosome recycling factor [Mycobacterium sp. JLS]
Length = 185
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 101/171 (59%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L+ +RTGRA+PGM I V+ G P+ L+ ++V +++ + I PY+
Sbjct: 13 MEKAVSVARDDLSSIRTGRANPGMFSRINVDYYGATTPITQLSSINVPEARMVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L+ +E AI +S LG+NP DG + +IP LT+E + + K ED K S+R R
Sbjct: 73 NQLRNIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKAKGEDAKVSVRNIR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+KA++ + KK G + +D++ R EK++D+ T Y D++ K KE E+
Sbjct: 133 RKAMEELARIKKDGEA-GEDEVSRAEKDLDKTTHTYTHQIDELVKHKEGEL 182
>gi|118590008|ref|ZP_01547412.1| ribosome releasing factor [Stappia aggregata IAM 12614]
gi|118437505|gb|EAV44142.1| ribosome releasing factor [Stappia aggregata IAM 12614]
Length = 187
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 96/172 (55%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ L E LRTGRAS M+D I VE G MP+N +A VSV + + L++ +D
Sbjct: 15 MQGALSVLKTEFAGLRTGRASSSMMDPITVEAYGQSMPINQVATVSVPEPRMLAVQVWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI S LGLNP VDG L IP L +E Q + KV K +E K SIR R
Sbjct: 75 SMVSAVEKAIRESNLGLNPVVDGMLLRLPIPELNQERRQELIKVAHKYAEQAKVSIRHVR 134
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ +D KKA + +D + E+ +LT + + D + + KE+EI++
Sbjct: 135 RDGMDAAKKAEKDGDISQDDSRVASDEVQKLTDQMIAEVDSMLEKKEQEISQ 186
>gi|427722319|ref|YP_007069596.1| ribosome recycling factor [Leptolyngbya sp. PCC 7376]
gi|427354039|gb|AFY36762.1| ribosome recycling factor [Leptolyngbya sp. PCC 7376]
Length = 182
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I A R LRTGRAS +LD I VE G PL LA ++ DS T+ I P+D
Sbjct: 10 MKKTIDATQRSFNSLRTGRASAALLDRITVEYYGADTPLKSLASITTPDSSTIMIQPFDK 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI S LGL P DG + IP LTKE + + K +K +E+ K +IR R
Sbjct: 70 GSVSDIERAISMSDLGLTPNNDGTIVRLNIPPLTKERRKELVKTASKLAEEGKVAIRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K S + +D+ + L+ ++ ++T ++ D++ K KEK+I
Sbjct: 130 RDAIDDVRKQEKNSDISEDESRDLQDDVQKITDEFTSKIDELLKVKEKDI 179
>gi|350552490|ref|ZP_08921690.1| Ribosome-recycling factor [Thiorhodospira sibirica ATCC 700588]
gi|349794029|gb|EGZ47852.1| Ribosome-recycling factor [Thiorhodospira sibirica ATCC 700588]
Length = 185
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I +L EL K+RTGRA +LDH++VE G +P+N +A V+V DS+TLS+ P++
Sbjct: 13 MGKTIESLQHELAKIRTGRAHTSLLDHVMVEYYGSDVPINQVANVAVEDSRTLSVTPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI++S LGLNP G + +P LT+E + + KVV +E+ + ++R R
Sbjct: 73 TMVAKVEKAILTSDLGLNPSSAGTVIRVPMPPLTEERRRELIKVVRHEAENARVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + +K ++ +D +R + E+ +LT YV D + KEKE+ E
Sbjct: 133 RDANNELKHLVKDKTISEDDERRGQDEVQKLTDSYVAEVDRLLAEKEKELLE 184
>gi|163851510|ref|YP_001639553.1| ribosome recycling factor [Methylobacterium extorquens PA1]
gi|218530317|ref|YP_002421133.1| ribosome recycling factor [Methylobacterium extorquens CM4]
gi|240138677|ref|YP_002963149.1| ribosome recycling factor [Methylobacterium extorquens AM1]
gi|254561273|ref|YP_003068368.1| Ribosome recycling factor [Methylobacterium extorquens DM4]
gi|418058576|ref|ZP_12696547.1| Ribosome-recycling factor [Methylobacterium extorquens DSM 13060]
gi|238687348|sp|A9W4H6.1|RRF_METEP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809519|sp|B7KZH3.1|RRF_METC4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|163663115|gb|ABY30482.1| ribosome recycling factor [Methylobacterium extorquens PA1]
gi|218522620|gb|ACK83205.1| ribosome recycling factor [Methylobacterium extorquens CM4]
gi|240008646|gb|ACS39872.1| Ribosome recycling factor (Ribosome releasing factor) (RRF)
[Methylobacterium extorquens AM1]
gi|254268551|emb|CAX24508.1| Ribosome recycling factor (Ribosome releasing factor) (RRF)
[Methylobacterium extorquens DM4]
gi|373567907|gb|EHP93865.1| Ribosome-recycling factor [Methylobacterium extorquens DSM 13060]
Length = 187
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +LS++L LRTGRA+P +LD I VE G MP+ +A VSV + + LSI+ +D
Sbjct: 15 MQGAVSSLSKDLGSLRTGRATPSLLDPIQVEAYGSSMPMAQVATVSVPEPRLLSISVWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI S LGLNP +GQ + IP + ++ + M KV K +E+ + ++R R
Sbjct: 75 SMVTNVEKAIRESDLGLNPMTEGQTIRLRIPEMNEQRRKEMVKVAHKYTEEARVAVRHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD++KK ++ +D KR E+ + T + D + +KEKEI
Sbjct: 135 RDGLDILKKLEKDGAISQDDEKRQAAEVQKATDDAINEIDGVLASKEKEI 184
>gi|392989246|ref|YP_006487839.1| ribosome recycling factor [Enterococcus hirae ATCC 9790]
gi|392336666|gb|AFM70948.1| ribosome recycling factor [Enterococcus hirae ATCC 9790]
Length = 185
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A L REL ++R GRA+ +LD I V G PLN +A + + +++ L I P+D
Sbjct: 13 MQKAAQNLQRELGQIRAGRANASLLDRITVNYYGAPTPLNQMASIQIPEARVLMITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+++E AI++S +G++P DG + IP LT+E + + K V K +E+ K ++R R
Sbjct: 73 SILQDVEKAIMASDIGISPTNDGNVIRLIIPQLTEERRKELAKDVKKEAENAKIAVRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D KK + +D ++ LEKE+ +LT + +K D I KE+E+
Sbjct: 133 RDAIDEYKKQQKNGDITEDDLRGLEKEVQKLTDESIKEVDKIASDKEQEL 182
>gi|227495072|ref|ZP_03925388.1| ribosome recycling factor [Actinomyces coleocanis DSM 15436]
gi|226831524|gb|EEH63907.1| ribosome recycling factor [Actinomyces coleocanis DSM 15436]
Length = 185
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 102/171 (59%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A RE +RTGRA+P + ++V+ G PL LA V + +++ + ++PYD
Sbjct: 13 MEKALAATKREFGNIRTGRANPETFNSLLVDYYGAPTPLQQLASVQIPEARMVLVSPYDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++ + AI S LG+NP DG + +PALT+E + K+ +ED + SIR R
Sbjct: 73 SAMQAIITAIRESDLGVNPTDDGNVIRCTLPALTEERRKEYVKLAKSKAEDGRVSIRNVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+KA LD +KK G + +D+++R EKE++ LTK +V D AKEK++
Sbjct: 133 RKAKEELDRIKKDGEA-GEDEVERAEKELETLTKNFVAKVDAELDAKEKDL 182
>gi|146341066|ref|YP_001206114.1| ribosome recycling factor [Bradyrhizobium sp. ORS 278]
gi|190360236|sp|A4YVG3.1|RRF_BRASO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|146193872|emb|CAL77889.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Bradyrhizobium sp. ORS 278]
Length = 187
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL EL LRTGRAS M++ + VE G MPLN LA VSV + + LS+ +D
Sbjct: 15 MQGATQALKHELGGLRTGRASASMVEPVQVEAYGSHMPLNQLATVSVPEPRLLSVQVWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AIV S LGL+P +GQ + IP L +E + + KV K +E + ++R R
Sbjct: 75 SMVKAVEKAIVDSNLGLSPATEGQVIRLRIPELNQERRKELVKVAHKYAEQARVAVRHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD +KK + +D +RL ++ + T + D + AKEKEI
Sbjct: 135 RDGLDTLKKLEKNHEMSEDDQERLAGDVQKATDSVISEIDQLLAAKEKEI 184
>gi|283769070|ref|ZP_06341976.1| ribosome recycling factor [Bulleidia extructa W1219]
gi|283104427|gb|EFC05804.1| ribosome recycling factor [Bulleidia extructa W1219]
Length = 182
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 100/168 (59%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + L EL +RTG A+ ++D + + G PLN +A +SV + +T+ I PYDP
Sbjct: 13 MDKVMDHLQSELNTVRTGMANAKLMDRVEADYYGTPTPLNQIAGISVSEGRTIVIKPYDP 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LKE+E A + LG+ P+ DG + +P LT E + M K V + +E+ K IR R
Sbjct: 73 SSLKEIERACNEANLGMAPQNDGTVIRLTVPQLTGETRKEMSKKVGQIAEESKIQIRNIR 132
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A++++KK + +D K +E EI +LT KYVK D+ KAKE E+
Sbjct: 133 RDAMNVVKK-DKEMDEDMQKDMENEIQKLTDKYVKKIDEQAKAKEAEV 179
>gi|71275615|ref|ZP_00651900.1| Ribosome recycling factor [Xylella fastidiosa Dixon]
gi|170729576|ref|YP_001775009.1| ribosome recycling factor [Xylella fastidiosa M12]
gi|182680889|ref|YP_001829049.1| ribosome recycling factor [Xylella fastidiosa M23]
gi|71163506|gb|EAO13223.1| Ribosome recycling factor [Xylella fastidiosa Dixon]
gi|71730732|gb|EAO32806.1| Ribosome recycling factor [Xylella fastidiosa Ann-1]
gi|167964369|gb|ACA11379.1| ribosome recycling factor [Xylella fastidiosa M12]
gi|182630999|gb|ACB91775.1| ribosome recycling factor [Xylella fastidiosa M23]
Length = 190
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 103/172 (59%), Gaps = 6/172 (3%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I AL L +RTGRASP +LD I ++ G PLN +A +SV + ++L I +D
Sbjct: 18 MTKSIDALRNSLASVRTGRASPSLLDGIKIKAYGTDTPLNQVASISVSEGRSLVITVFDK 77
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N K++E AI +S LGL P V G + +P LT+E + + KVV ED K +IR R
Sbjct: 78 NMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHSEGEDTKVAIRNIR 137
Query: 121 ----QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q+ DM+K + +D+++ E++I +LT K +KS D++ K+KE+E+
Sbjct: 138 RDANQQIKDMLK--SKEITEDEVRHGEEDIQKLTDKAIKSVDEVVKSKEQEL 187
>gi|225619145|ref|YP_002720371.1| ribosome recycling factor [Brachyspira hyodysenteriae WA1]
gi|225213964|gb|ACN82698.1| ribosome recycling factor [Brachyspira hyodysenteriae WA1]
Length = 182
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 97/171 (56%), Gaps = 2/171 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI +L +L +RTGRA+ +LD + VE G MPL + VS DS+T+ I P+D
Sbjct: 10 MEKAISSLQNDLKGIRTGRANASILDGVKVEAYGSSMPLKQVGNVSTPDSRTIMIQPFDK 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI+ + LG NP DG + +P LTKE + + K V E+ K ++R R
Sbjct: 70 GLVSDIEKAILKADLGFNPFNDGGNIRIVVPELTKERREELKKGVRHRGEEAKIAVRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
+ D +KK ++ +D+ K EK+I T Y+K DD+ KEKE++
Sbjct: 130 RDENDKIKKELKDKTITEDESKSQEKKIQNDTDSYIKKIDDMINTKEKELD 180
>gi|317121843|ref|YP_004101846.1| ribosome recycling factor [Thermaerobacter marianensis DSM 12885]
gi|315591823|gb|ADU51119.1| ribosome recycling factor [Thermaerobacter marianensis DSM 12885]
Length = 184
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 102/171 (59%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEA + REL +R GRA+P +L+ I V+ G P++ LA ++ + + L + P+D
Sbjct: 13 MEARVENFRRELAAVRAGRATPALLEKIRVDYYGTPTPIHQLATITAPEPRMLVVQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI S LG+NP DGQ + +P LT+E + K V K +E+ + ++R R
Sbjct: 73 SVMGEIEKAIAKSDLGVNPSSDGQVIRIVLPPLTEETRNELVKRVRKMAEEERVAVRNVR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A D +K+ +D+++R ++++ ELT + + D++ AKEKEI E
Sbjct: 133 RQANDDLKELEDQGFSEDEIRRAQEKVQELTDRTIARIDELLAAKEKEIRE 183
>gi|410667467|ref|YP_006919838.1| ribosome-recycling factor Frr [Thermacetogenium phaeum DSM 12270]
gi|409105214|gb|AFV11339.1| ribosome-recycling factor Frr [Thermacetogenium phaeum DSM 12270]
Length = 185
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + L ++L LR GRA+P +LD + + G P+N +A +SV + + L I P+D
Sbjct: 13 MKKTVDLLVKDLATLRAGRATPALLDKVYADYYGTPTPINQMATISVPEPRLLVIQPWDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L ++E AI+ S LG+ P DG + IP LT+E + + K++ K +E+ + +IR R
Sbjct: 73 NMLSQIEKAILKSDLGITPVSDGNVIRLNIPPLTQEKRKDLVKIINKKAEEGRIAIRNLR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A + +K A L +D+ +R E+ +LT KY+ D I ++KEKEI E
Sbjct: 133 REANERVKAAEKKGELSEDEARRYLDEVQKLTDKYIDKIDQIAESKEKEIME 184
>gi|307152127|ref|YP_003887511.1| ribosome recycling factor [Cyanothece sp. PCC 7822]
gi|306982355|gb|ADN14236.1| ribosome recycling factor [Cyanothece sp. PCC 7822]
Length = 182
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I A R +RTGRA+ +LD + VE G + PL LA ++ D+ T++I PYD
Sbjct: 10 MQKTIEATQRSFNTIRTGRANASLLDRVTVEYYGTETPLKSLANITTPDATTIAIQPYDR 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L ++E AI S +GL P DGQ + IP LT + + + K+ K +E+ K ++R R
Sbjct: 70 SSLGKIEKAIQMSDVGLTPNNDGQIIRLNIPPLTSDRRKELVKLAGKLAEEGKVAVRNIR 129
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K S + +D+ + L+ +I ++T +Y D++ KAKEK+I
Sbjct: 130 RDAIDAIRKQEKSHEISEDEARNLQDDIQKITDEYNAKIDELLKAKEKDI 179
>gi|4768863|gb|AAD29657.1|AF124757_17 ribosome recycling factor [Zymomonas mobilis subsp. mobilis ZM4]
Length = 185
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
++ A+ +L + + LRTGRAS +LD + V+ G MPLN +A VSV + + +++ +D
Sbjct: 13 IKGAVESLKSDFSGLRTGRASTSLLDPVTVDVYGANMPLNQVATVSVPEPRMITVQVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++ AI S+ LGLNP VDGQ L IP LT+E + + K+V + SE + ++R R
Sbjct: 73 SNVTPVDKAIRSAGLGLNPVVDGQMLRLPIPDLTEERRKELAKLVGQYSEKARIAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +K+ + + +D+ KR E E+ +LT K + D + KEKEI
Sbjct: 133 RDGNDQIKQDEKKNEISEDEKKRFENEVQKLTDKTIADIDALAVHKEKEI 182
>gi|188581299|ref|YP_001924744.1| ribosome recycling factor [Methylobacterium populi BJ001]
gi|238692901|sp|B1ZLC8.1|RRF_METPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|179344797|gb|ACB80209.1| ribosome recycling factor [Methylobacterium populi BJ001]
Length = 187
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +LS++L LRTGRA+P +LD I VE G MP+ +A VSV + + LSI+ +D
Sbjct: 15 MQGAVSSLSKDLGSLRTGRATPSLLDPIQVEAYGASMPMAQVATVSVPEPRLLSISVWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI S LGLNP +GQ + IP + ++ + M KV K +E+ + ++R R
Sbjct: 75 SMVTNVEKAIRESDLGLNPMTEGQTIRLRIPEMNEQRRKEMVKVAHKYTEEARVAVRHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD++KK ++ +D KR E+ + T + D + +KEKEI
Sbjct: 135 RDGLDILKKLEKDGAISEDDEKRQAGEVQKATDDAIAEIDGVLASKEKEI 184
>gi|183981840|ref|YP_001850131.1| ribosome recycling factor [Mycobacterium marinum M]
gi|238689247|sp|B2HJP0.1|RRF_MYCMM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|183175166|gb|ACC40276.1| ribosome recycling factor Frr [Mycobacterium marinum M]
Length = 185
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ ++ +RTGRA+PGM I+++ G P+ LA ++V +++ + I PY+
Sbjct: 13 MEKAVSVAREDMATIRTGRANPGMFSRIVIDYYGTHTPITQLASINVPEARMVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L +E AI +S LG+NP DG + A+P LT+E + + K E+ + S+R R
Sbjct: 73 NQLHAIETAIRNSDLGVNPTNDGTIIRVAVPQLTEERRRDLVKQAKHKGEEARVSVRNIR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ + +K G + +D++ R EK++D+ T +YV D++ K KE E+ E
Sbjct: 133 RKAMEELHRIRKDGEA-GEDEVARAEKDLDKSTHQYVAQIDELVKHKEGELLE 184
>gi|329947861|ref|ZP_08294793.1| ribosome recycling factor [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328523485|gb|EGF50583.1| ribosome recycling factor [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 185
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A EL +RTGRA+P M + I+V+ G PL LA +++ +++T+ ++P+D
Sbjct: 13 MDKALQAAKSELATIRTGRANPSMFNGIVVDYYGAPTPLQQLASLTIPEARTVLVSPFDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++ AI S LG+NP DG + +PALT+E + K+ +ED + +R R
Sbjct: 73 SAMKDIVTAIRESDLGVNPTDDGTVIRVTLPALTEERRKDYVKLARSRAEDSRVQVRGIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KA L+ +KK G + +D +KR E E+D LTK++V+ D AKE E+ E
Sbjct: 133 AKAKKELEAIKKDGEA-GEDDVKRAEHELDGLTKRFVEQVDAALSAKESELLE 184
>gi|300778312|ref|ZP_07088170.1| ribosome recycling factor [Chryseobacterium gleum ATCC 35910]
gi|300503822|gb|EFK34962.1| ribosome recycling factor [Chryseobacterium gleum ATCC 35910]
Length = 184
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+AA+ L ++R GRAS M+ ++VE G P+N +A VS+ D+ T+SI P+D
Sbjct: 15 MDAAVKHLDHAFQRIRAGRASTTMVQDVMVEYYGAMTPINQVANVSIPDAMTISIQPWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI++S LG P +G+ +I +P LT+E + + K +E K ++R +R
Sbjct: 75 TAINAIEKAIINSNLGFAPSNNGENIILNVPPLTEERRKELAKQAKAEAEQTKVTVRNAR 134
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q L +KK + +D +K +E+EI T KYVK D+ K KE EI
Sbjct: 135 QDGLKELKKL-DGVSEDVIKGVEEEIQTYTDKYVKLCDEHLKTKEAEI 181
>gi|443242943|ref|YP_007376168.1| ribosome recycling factor [Nonlabens dokdonensis DSW-6]
gi|442800342|gb|AGC76147.1| ribosome recycling factor [Nonlabens dokdonensis DSW-6]
Length = 184
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L ++L +R G+A P ML ++V+ G + PL+ +A VS D++TLSI+P++
Sbjct: 16 MDNAITHLEKQLLSIRAGKAMPAMLSTVMVDYYGSQTPLSQVANVSTPDARTLSISPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ E+E I+ + LGLNP +G+ +I +PALT+E + + K E+ K +R R
Sbjct: 76 GMITEIEKGIMYANLGLNPMNNGESIIINVPALTEERRKDLVKQAKAEGEEAKIGVRNDR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A++ +KK + +D +K E ++ +LT KYV D+ KEKEI
Sbjct: 136 KVAMNDLKKL--DISEDLLKNAEGDVQDLTNKYVAKIDEHLTVKEKEI 181
>gi|71903032|ref|YP_279835.1| ribosome recycling factor [Streptococcus pyogenes MGAS6180]
gi|123640384|sp|Q48UX6.1|RRF_STRPM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|71802127|gb|AAX71480.1| ribosome recycling factor [Streptococcus pyogenes MGAS6180]
Length = 185
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 101/164 (61%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+LSRE +R GRA+ +LD I V+ G PLN LA ++V +++ L I+P+D +++K++
Sbjct: 19 SLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDD 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KK + +D++K LEK+I ++T +K D + KEKE+
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKVTDDAIKEIDRMTAEKEKEL 182
>gi|153954045|ref|YP_001394810.1| ribosome recycling factor [Clostridium kluyveri DSM 555]
gi|219854658|ref|YP_002471780.1| hypothetical protein CKR_1315 [Clostridium kluyveri NBRC 12016]
gi|189044051|sp|A5N831.1|RRF_CLOK5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809504|sp|B9E1J1.1|RRF_CLOK1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|146346926|gb|EDK33462.1| Frr [Clostridium kluyveri DSM 555]
gi|219568382|dbj|BAH06366.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 185
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M + L +EL ++ GRA+P +LD I VE G P++ LA +S+ +++ L+I P+D
Sbjct: 13 MNKTVDVLVKELASMKAGRANPAILDKIEVEYYGAMTPISQLAGISIPEARILAIQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ LK +E AI+ S LG+NP DG+ + IP LT+E + + K + KT ED K +IR R
Sbjct: 73 SALKSIEKAILKSDLGINPSNDGEIIRLIIPELTEETRKNIVKNIKKTGEDSKVAIRGIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ D K K + + +D++K+ E++I + T ++K+ D I + KEKEI
Sbjct: 133 RECNDKFKALKKKNDISEDEIKKGEEQIQKKTDIFIKNIDAILEKKEKEI 182
>gi|296171523|ref|ZP_06852787.1| ribosome recycling factor [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295894085|gb|EFG73846.1| ribosome recycling factor [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 185
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L+ +RTGRA+PGM I+++ G P+ LA ++V +++ + I PY+
Sbjct: 13 MEKAVSVARDDLSTIRTGRANPGMFSRIVIDYYGATTPITQLASINVPEARLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI +S LG+NP DG + A+P LT+E + + K ED + S+R R
Sbjct: 73 SQLGAIENAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQAKSKGEDARVSVRNIR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ + +K G + +D++ R EKE+D+ T +Y D++ K KE E+ E
Sbjct: 133 RKAMEELHRIRKDGEA-GEDEVGRAEKELDKATHQYTAQIDELVKHKEGELLE 184
>gi|297191773|ref|ZP_06909171.1| ribosome recycling factor [Streptomyces pristinaespiralis ATCC
25486]
gi|197721709|gb|EDY65617.1| ribosome recycling factor [Streptomyces pristinaespiralis ATCC
25486]
Length = 185
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A++ + +RTGRA P M + I+ + G P+N LA SV + + + P+D
Sbjct: 13 MEKAVLVAKDDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT++ + KV +ED K SIR R
Sbjct: 73 TALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTQDRRKEYIKVAKTKAEDAKISIRSVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA +D + K G + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKETIDKLIKDG-EVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
>gi|453364566|dbj|GAC79843.1| ribosome-recycling factor [Gordonia malaquae NBRC 108250]
Length = 185
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ + ++ +RTGRA+P M + + +E G + P+ +A ++ + + + I PY+
Sbjct: 13 MEKAVAHVRDDMASIRTGRANPAMFNKVAIEYYGARTPITQVASINTPEPRLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+T+ ++E AI +S LG+NP DG + AIP LT+E + + K ED K +IR R
Sbjct: 73 STMNDIETAIRNSDLGVNPTNDGNVIRVAIPQLTEERRKDLVKQARNKGEDAKVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+KA D +K+ +D++ R EKE+D+ T Y S D + K KE E+
Sbjct: 133 RKAADELKRIQKDGEAGEDEVVRAEKELDKTTHTYTDSVDVLVKNKEAEL 182
>gi|124005436|ref|ZP_01690277.1| ribosome recycling factor [Microscilla marina ATCC 23134]
gi|123989258|gb|EAY28836.1| ribosome recycling factor [Microscilla marina ATCC 23134]
Length = 187
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 102/171 (59%), Gaps = 5/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ + EL K+R G+A P MLD I V+ G PLN +A V+ D++TL I P++
Sbjct: 16 MDKAVQHTNHELNKIRAGKAMPNMLDSIQVDYYGAPTPLNQVASVTAPDARTLMIRPFEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI S LGLNP+ DG+ + IPALT+E + + K V + E K SIR R
Sbjct: 76 SVIAGIEKAIRDSDLGLNPQNDGENIRINIPALTEERRKQLVKQVKQEIESGKVSIRNVR 135
Query: 121 Q---KALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +L ++K G+S +D++KR E+ + +LT + DD+ + KE E+
Sbjct: 136 KDTNNSLKDLQKEGAS--EDEVKRAEESVQKLTNDFTNKVDDLYEKKETEL 184
>gi|219130047|ref|XP_002185186.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403365|gb|EEC43318.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 173
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ ++ L +RTGRAS +LD + V+ GV+ PLN +A +SV ++ LSI+PYD
Sbjct: 1 MAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQLSIDPYDK 60
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+L +E AIV S LGL DG + IP++T++ + M K+ E+ K ++R R
Sbjct: 61 TSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEGKVAVRNIR 120
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD +KK S + +D+MK + + +LT K VK D++ AKEKE+
Sbjct: 121 RDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEV 170
>gi|448243659|ref|YP_007407712.1| ribosome recycling factor [Serratia marcescens WW4]
gi|445214023|gb|AGE19693.1| ribosome recycling factor [Serratia marcescens WW4]
Length = 173
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ A +++K+RTGRASP +LD I+VE G PL LA V+V DS+TL IN +D
Sbjct: 1 MEKSVEAFKNQISKIRTGRASPSILDGIMVEYYGAATPLRQLANVTVEDSRTLKINVFDR 60
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI+SS LGLNP G + +P LT+E + + K+V +E + ++R R
Sbjct: 61 SLSQAVEKAIMSSDLGLNPSSAGSDIRVPLPPLTEERRKDLIKIVRGEAEQGRVAVRNVR 120
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K + +D+ +R + EI ++T Y+K D KEKE+
Sbjct: 121 RDANDKVKALLKDKEISEDEERRSQDEIQKMTDAYIKLVDAALAEKEKEL 170
>gi|332982468|ref|YP_004463909.1| ribosome recycling factor [Mahella australiensis 50-1 BON]
gi|332700146|gb|AEE97087.1| ribosome recycling factor [Mahella australiensis 50-1 BON]
Length = 186
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I L +EL+ LRTGRA+P +LD+I V+ G P+ L ++ + + L I P+DP
Sbjct: 14 MNKVIDVLKKELSTLRTGRANPQILDNITVDYYGASTPITQLGNITSPEPRLLVIAPWDP 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+K++E AI S LG+NP DG+ + IP LT+E + + K+ K E+ K ++R R
Sbjct: 74 KIIKDMEKAIQKSDLGINPSNDGKVIRLVIPELTEERRKELVKLARKMGEEAKVAVRNIR 133
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++A+D +KK + +D+ KR + +I +LT + D I + KEK+I
Sbjct: 134 REAIDHLKKQKKDGDISEDEEKRQQDDIQKLTDNKINEIDSIIEQKEKDI 183
>gi|453065476|gb|EMF06438.1| ribosome recycling factor [Serratia marcescens VGH107]
Length = 185
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ A +++K+RTGRASP +LD I+VE G PL LA V+V DS+TL IN +D
Sbjct: 13 MEKSVEAFKNQISKIRTGRASPSILDGIMVEYYGAATPLRQLANVTVEDSRTLKINVFDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI+SS LGLNP G + +P LT+E + + K+V +E + ++R R
Sbjct: 73 SLSQAVEKAIMSSDLGLNPSSAGSDIRVPLPPLTEERRKDLIKIVRGEAEQGRVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K + +D+ +R + EI ++T Y+K D KEKE+
Sbjct: 133 RDANDKVKALLKDKEISEDEERRSQDEIQKMTDAYIKLVDAALAEKEKEL 182
>gi|86749942|ref|YP_486438.1| ribosome recycling factor [Rhodopseudomonas palustris HaA2]
gi|123292529|sp|Q2IW83.1|RRF_RHOP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|86572970|gb|ABD07527.1| ribosome recycling factor [Rhodopseudomonas palustris HaA2]
Length = 187
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL EL LRTGRA+ ML+ + V+ G MPLN LA V+V + + LS+ +D
Sbjct: 15 MQGASQALQHELGGLRTGRAAASMLEPVQVDAYGTHMPLNQLATVTVPEPRLLSVQVWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++ +E AIV S LGL+P +GQ L IP L ++ + + KV K +E + ++R R
Sbjct: 75 SMVRAVEKAIVDSNLGLSPATEGQVLRLRIPELNQDRRKELVKVAHKYAEAARVAVRHVR 134
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD +KK S + +D KRL++E+ + T + D + +KEKEI
Sbjct: 135 RDGLDTIKKLEKSHEISEDDQKRLDQEVQKATDSAISEIDQLLASKEKEI 184
>gi|289450226|ref|YP_003475249.1| ribosome recycling factor [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289184773|gb|ADC91198.1| ribosome recycling factor [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 187
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I L L +R GRA+P +LD I + G + PLN +A + V + + ++I+P+DP
Sbjct: 15 MNKSIDNLKENLNSVRAGRANPHILDRITISYYGAETPLNQVANIQVPEPRMITISPWDP 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L +E A++ S +G+NP DG+ + P LT+E + + K VAK E+ K +R R
Sbjct: 75 SSLSLIEKAVLMSDIGINPNNDGKMIRLVFPTLTEERRKDLAKTVAKYGEETKIVVRNVR 134
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A+D K S L D ++ +E ++ ++T ++ D+I AKEK++ E
Sbjct: 135 REAIDKFKALHKSKELSDDDIRTVEDDVQKITNRFTAKIDEIVAAKEKDLME 186
>gi|51245009|ref|YP_064893.1| ribosome recycling factor [Desulfotalea psychrophila LSv54]
gi|60390247|sp|Q6AP38.1|RRF_DESPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|50876046|emb|CAG35886.1| probable ribosome recycling factor [Desulfotalea psychrophila
LSv54]
Length = 184
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ A +L+++RTGRAS +LD I V G MPLN +A +++ +S+ +++ P+DP
Sbjct: 12 MAKSVEAFKNDLSRVRTGRASISILDDITVVAYGSTMPLNQVATLTIPESRMIALQPWDP 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+ S LGLNP DG+ + IP LT++ + + K V K +E+ + +IR R
Sbjct: 72 QMIPPIEKAILKSGLGLNPVNDGKVVRLNIPQLTEDRRKDLVKQVKKIAEEFRVAIRNVR 131
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D +K K + +D + +L+ + + T Y+K D++ +KEKE+ E
Sbjct: 132 RDAIDTLKLQKKDKEISEDDLFKLQDDAQKETDIYIKQLDEVSASKEKEVME 183
>gi|414341277|ref|YP_006982798.1| ribosome recycling factor [Gluconobacter oxydans H24]
gi|411026612|gb|AFV99866.1| ribosome recycling factor [Gluconobacter oxydans H24]
gi|453330552|dbj|GAC87298.1| ribosome recycling factor [Gluconobacter thailandicus NBRC 3255]
Length = 188
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI +L R+L+ LR+GRASP +L+ + VE G ++PL+ + ++V +++ L+++ +D
Sbjct: 16 MDGAIESLRRDLSGLRSGRASPNLLEPVRVEAYGSEVPLSQVGSIAVPEARMLTVSVWDR 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI S LGLNP DGQ + IP LT+E + + + +E+ K +IR R
Sbjct: 76 TVVGAVERAIRDSGLGLNPAADGQTIRVPIPVLTEERRNELARAANRYAENGKIAIRGVR 135
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ ++ K + + +D MK I +LT +YVK DDI KE+EI +
Sbjct: 136 RDGMEQTKALEKKGEISQDDMKTWSDSIQKLTDQYVKKVDDILADKEREIKQ 187
>gi|376003453|ref|ZP_09781263.1| ribosome recycling factor [Arthrospira sp. PCC 8005]
gi|375328110|emb|CCE17016.1| ribosome recycling factor [Arthrospira sp. PCC 8005]
Length = 173
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ + R +RTGRA+ +LD I VE G PL LA +S D+ T++I P+D
Sbjct: 1 MKKALESTGRSFNTIRTGRANASLLDRITVEYYGSPTPLKSLASISTPDASTITIQPFDR 60
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N+L +E AI S +GL P DG + IP LT+ Q K+ K +E+ + S+R R
Sbjct: 61 NSLNNIEKAISMSDVGLTPNNDGSVVRLNIPPLTEARRQEFVKLAGKYAEEGRVSVRNIR 120
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K + +D+ + ++ +I +LT KY D++ +AKEK+I
Sbjct: 121 RDAIDSVRKQEKNGDISEDESRDIQDKIQKLTDKYTAKVDELLEAKEKDI 170
>gi|359420941|ref|ZP_09212872.1| ribosome-recycling factor [Gordonia araii NBRC 100433]
gi|358243214|dbj|GAB10941.1| ribosome-recycling factor [Gordonia araii NBRC 100433]
Length = 185
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ ++ +RTGRA+P M + ++++ G P+ +A +S +++ + I PY+P
Sbjct: 13 MEKAVSKAKDDMGSIRTGRANPSMFNRVVIDYYGSPTPVTQVASISTPEARLVVIKPYEP 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L ++E AI +S LG+NP DG + +IP LT++ + + K ED K +IR R
Sbjct: 73 SSLGDIETAIRNSDLGVNPTNDGNLIRVSIPQLTEDRRKELVKQAKAKGEDAKVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ +K+ +D++ R EKE+D+ T YV D+I K KE E+ E
Sbjct: 133 RKAVEELKRIQKDGEAGEDEVVRAEKELDKTTASYVAQVDEIVKHKEGELLE 184
>gi|163839290|ref|YP_001623695.1| ribosome recycling factor [Renibacterium salmoninarum ATCC 33209]
gi|189044067|sp|A9WL12.1|RRF_RENSM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|162952766|gb|ABY22281.1| ribosome recycling factor [Renibacterium salmoninarum ATCC 33209]
Length = 185
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ + + +RTGRA+PG+ ++V+ G PL LA +V +++TL I P+D
Sbjct: 13 MDKAVEVAKEDFSAVRTGRANPGLFAKVMVDYYGAPTPLQQLASFAVPEARTLLITPFDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L ++E A+ +S +G NP DG + +P LT+E + K+V SED K SIR R
Sbjct: 73 SALGDIEKALSNSEVGANPSNDGNVIRVVMPELTQERRREYVKIVRGKSEDAKISIRNIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA LD + K G + +D+ R EKE+D LTK + ++ D++ K KE E+ E
Sbjct: 133 RKAKESLDKIVKDGDA-GEDEGSRAEKELDGLTKTHTENIDELLKRKEAELLE 184
>gi|126657954|ref|ZP_01729107.1| ribosome releasing factor [Cyanothece sp. CCY0110]
gi|126620894|gb|EAZ91610.1| ribosome releasing factor [Cyanothece sp. CCY0110]
Length = 181
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ A R +RTGRA+ +LD + VE G + PL LA +S D+ T+ I PYD
Sbjct: 9 MQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTIMIQPYDK 68
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI S +GL P DG + IP LT+E + + K+ +K +E+ K +IR R
Sbjct: 69 GSMGQIEKAIQMSDVGLTPNNDGNVIRLNIPPLTEERRKDLVKLASKMAEEGKVAIRNIR 128
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K S + +D+ + L+ +I ++T ++ + DD+ AKEK+I
Sbjct: 129 RDAIDDVRKQEKNSDISEDESRGLQDDIQKVTDQFTEKIDDLLTAKEKDI 178
>gi|326336602|ref|ZP_08202771.1| ribosome recycling factor [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325691267|gb|EGD33237.1| ribosome recycling factor [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 184
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 99/168 (58%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ L + L +R G+ASP ML + V+ G + PL+ +A V+ DS+T+SI P++
Sbjct: 16 MQGSVAHLEKSLLNIRAGKASPQMLGSVFVDYYGSQTPLSQVANVNTPDSRTISIQPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L +E AI+ + LG NP +G+ +I ++P LT+E + + K SE+ K +R +R
Sbjct: 76 NMLSTIEKAIMVANLGFNPMNNGETIIISVPPLTEERRKELVKQAKGESEEAKIGVRNAR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q+A +KK + D K E+ + +LT KY+K D+I KE EI
Sbjct: 136 QEANKEIKKI--EISDDIKKDTEERVQKLTDKYIKQIDEILAKKEAEI 181
>gi|403667586|ref|ZP_10932891.1| ribosome recycling factor [Kurthia sp. JC8E]
Length = 185
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL+R L +R GRA+ +LD I VE G PLN +A +S+ +++ L I PYD
Sbjct: 13 MSKAIDALTRALAAIRAGRANASLLDRITVEYYGAPTPLNQMAGISIPEARLLVIQPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L ++E A++ S LG+ P DG + IPALT+E + + K+V K +E+ K +IR R
Sbjct: 73 TILGDIEKALLKSDLGITPTNDGSVIRLTIPALTEERRKDLVKLVKKEAEEAKVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D KK + +D ++ ++ +LT + +K D++ KE EI
Sbjct: 133 RDANDDFKKLEKAGEITEDDLRSFSDDVQKLTDQNIKKIDEVAADKESEI 182
>gi|209526796|ref|ZP_03275317.1| ribosome recycling factor [Arthrospira maxima CS-328]
gi|209492757|gb|EDZ93091.1| ribosome recycling factor [Arthrospira maxima CS-328]
Length = 187
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ + R +RTGRA+ +LD I VE G PL LA +S D+ T++I P+D
Sbjct: 15 MKKALESTGRSFNTIRTGRANASLLDRITVEYYGSPTPLKSLASISTPDASTITIQPFDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N+L +E AI S +GL P DG + IP LT+ Q K+ K +E+ + S+R R
Sbjct: 75 NSLNNIEKAISMSDVGLTPNNDGSVVRLNIPPLTEARRQEFVKLAGKYAEEGRVSVRNIR 134
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K + +D+ + ++ +I +LT KY D++ +AKEK+I
Sbjct: 135 RDAIDSVRKQEKNGDISEDESRDIQDKIQKLTDKYTAKVDELLEAKEKDI 184
>gi|218439649|ref|YP_002377978.1| ribosome recycling factor [Cyanothece sp. PCC 7424]
gi|226703257|sp|B7K7R4.1|RRF_CYAP7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|218172377|gb|ACK71110.1| ribosome recycling factor [Cyanothece sp. PCC 7424]
Length = 182
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I + R +RTGRA+ +LD ++V+ G + PL LA ++ D+ T++I PYD
Sbjct: 10 MQKTIESTQRSFNTIRTGRANSALLDRVMVDYYGTETPLKSLANITTPDATTIAIQPYDR 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI S +GL P DGQ + IP LT E + + K+ K +E+ K +IR R
Sbjct: 70 GSMGQIEKAIQLSDIGLTPNNDGQMIRLNIPPLTTERRKELVKLAGKLAEEGKVAIRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K L +D+ + L+ EI ++T +Y D++ AKEK+I
Sbjct: 130 RDAIDSVRKQEKNHELSEDESRNLQDEIQKVTDEYTAKIDELLAAKEKDI 179
>gi|75676047|ref|YP_318468.1| ribosome recycling factor [Nitrobacter winogradskyi Nb-255]
gi|123613278|sp|Q3SRH5.1|RRF_NITWN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|74420917|gb|ABA05116.1| ribosome recycling factor [Nitrobacter winogradskyi Nb-255]
Length = 187
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 96/170 (56%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A +L EL LRTGRAS MLD + V+ G MPLN +A +SV + + LS+ +D
Sbjct: 15 MQGATQSLKHELGGLRTGRASSSMLDPVQVDAYGSHMPLNQVATISVPEPRLLSVQVWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AIV S LGL+P +GQ L IP L +E + + KV K +E K ++R R
Sbjct: 75 SMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEAAKVAVRHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD +KK + +D KRL ++ + T + D + KEKEI
Sbjct: 135 RDGLDTLKKLEKNHEISEDDEKRLANDVQKATDSVISEIDQLLAGKEKEI 184
>gi|342732396|ref|YP_004771235.1| ribosome recycling factor [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|417961544|ref|ZP_12603950.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-2]
gi|417964780|ref|ZP_12606448.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-4]
gi|417967104|ref|ZP_12608294.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-5]
gi|417968399|ref|ZP_12609424.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-co]
gi|418016191|ref|ZP_12655756.1| ribosome recycling factor [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372663|ref|ZP_12964755.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|342329851|dbj|BAK56493.1| ribosome recycling factor [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506526|gb|EGX28820.1| ribosome recycling factor [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|380333080|gb|EIA23739.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-2]
gi|380338068|gb|EIA27012.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-5]
gi|380339763|gb|EIA28445.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-co]
gi|380340090|gb|EIA28723.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-4]
gi|380342332|gb|EIA30777.1| Ribosome-recycling factor [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 185
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 97/161 (60%), Gaps = 4/161 (2%)
Query: 11 ELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAI 70
EL +R GRA+P MLD + VE GV LN LA +S +S+ L I P++ N LK++E AI
Sbjct: 23 ELGSVRVGRANPNMLDRVEVEYYGVMTRLNQLANISTPESRILMIQPWEKNILKDIEKAI 82
Query: 71 VSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALD---MM 127
+ S LGL P DG + IP +T+E + K K +ED K ++R R+ A D ++
Sbjct: 83 LKSDLGLMPNNDGSSIRLIIPEMTEETRRNTVKKAKKIAEDSKVALRALRRDANDKVKLL 142
Query: 128 KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KK G S+ +D +K+ E +I + T K+VK D+I KEKEI
Sbjct: 143 KKDG-SITEDDLKKAEDDIQKQTDKFVKKVDEIVANKEKEI 182
>gi|440232127|ref|YP_007345920.1| ribosome recycling factor [Serratia marcescens FGI94]
gi|440053832|gb|AGB83735.1| ribosome recycling factor [Serratia marcescens FGI94]
Length = 185
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ A +++K+RTGRASP +LD I+VE G PL LA ++V DS+TL IN +D
Sbjct: 13 MEKSVEAFKNQISKIRTGRASPSILDGIMVEYYGAATPLRQLANITVEDSRTLKINVFDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI+SS LGLNP G + +P LT+E + + K+V +E + S+R R
Sbjct: 73 SLSQAVEKAIMSSDLGLNPSSAGSDIRVPLPPLTEERRKDLIKIVRGEAEQGRVSVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +K + +D+ +R + +I ++T Y+K D KEKE+ E
Sbjct: 133 RDANDKVKALLKDKEISEDEERRSQDDIQKMTDAYIKLVDAALAEKEKELME 184
>gi|341583424|ref|YP_004763915.1| ribosome recycling factor [Rickettsia heilongjiangensis 054]
gi|350273207|ref|YP_004884520.1| ribosome releasing factor [Rickettsia japonica YH]
gi|340807650|gb|AEK74238.1| ribosome recycling factor [Rickettsia heilongjiangensis 054]
gi|348592420|dbj|BAK96381.1| ribosome releasing factor [Rickettsia japonica YH]
Length = 186
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L EL LRTGRAS +LD + VE G KMPL+ +A +S D++T+++ +D
Sbjct: 14 MEKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E I + LGL P DGQ + IPALT+E + + K+ K ED K S+R R
Sbjct: 74 SMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRKELVKLAHKYGEDTKISLRNIR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + +KK + + KD+ L +++ +LT Y D + K KE+EI
Sbjct: 134 RDGNEALKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEI 183
>gi|254462306|ref|ZP_05075722.1| ribosome recycling factor [Rhodobacterales bacterium HTCC2083]
gi|206678895|gb|EDZ43382.1| ribosome recycling factor [Rhodobacteraceae bacterium HTCC2083]
Length = 187
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 100/169 (59%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ L E LRTGRAS ML+ ++V+ G P+N + V+V + + ++IN +D
Sbjct: 16 MDGAMANLKTEFASLRTGRASGSMLEPVMVDAYGSMTPINQVGTVNVPEPRMVTINVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++++E AI S LG+NP+++G ++ IP L +E + + KV A+ +E + S+R R
Sbjct: 76 GLVQKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVAAQYTESARVSVRNVR 135
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA L +D K E E+ ELT +K+ D + K+KEI
Sbjct: 136 RDGMDQIKKAKNDGLSEDDQKFWEAEVQELTDAAIKAVDAALEVKQKEI 184
>gi|386362238|ref|YP_006071569.1| ribosome recycling factor [Streptococcus pyogenes Alab49]
gi|350276647|gb|AEQ24015.1| ribosome recycling factor [Streptococcus pyogenes Alab49]
Length = 185
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 101/164 (61%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+LSRE + +R GRA+ +LD I V+ G PLN LA ++V +++ L I+P+D +++K++
Sbjct: 19 SLSREYSSIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDD 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KK + +D++K LEK+I + T +K D + KEKE+
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKEL 182
>gi|312879901|ref|ZP_07739701.1| ribosome recycling factor [Aminomonas paucivorans DSM 12260]
gi|310783192|gb|EFQ23590.1| ribosome recycling factor [Aminomonas paucivorans DSM 12260]
Length = 185
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 2 EAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPN 61
E +I L L +RTGRA P +++ I V+ G PL +A+V++ +S+ + I P+D
Sbjct: 14 EKSIEHLKTTLQGIRTGRAHPALVEEIKVDYFGTLTPLKQMAMVNIPESRQIVIAPWDKT 73
Query: 62 TLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQ 121
LK +E AI +S LG+NPR+DG+ + +P LT+E + K+V K SE+ K +IR R+
Sbjct: 74 ALKAIEKAIQASSLGVNPRIDGESIRLTLPELTRERRVELSKLVNKYSEEAKVAIRNIRR 133
Query: 122 KALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ L+ +KK ++ +D++K+L+KE+ E T + + + K+KEI
Sbjct: 134 EVLEALKKMEKDGTISEDELKKLQKEVQEHTDEATRKVEQATAEKDKEI 182
>gi|317059748|ref|ZP_07924233.1| ribosome recycling factor [Fusobacterium sp. 3_1_5R]
gi|313685424|gb|EFS22259.1| ribosome recycling factor [Fusobacterium sp. 3_1_5R]
Length = 189
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 4/172 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I A + T +R GRAS MLD+I VE G MPLN +A VS +++ L I+P+D
Sbjct: 15 MQKTIEATKEKFTSIRAGRASVAMLDNIKVEQYGSDMPLNQVATVSAPEARLLVIDPWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI+++ LG+NP DG+ + +P LT + + K+ K +E+ K ++R R
Sbjct: 75 TMIPKIEKAILAANLGMNPNNDGRVVRLVMPELTADRRKEYVKLAKKEAENGKIAVRNIR 134
Query: 121 QKALDMMKK----AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +KK S + +D++KR E E+ LT K +K DD+ KEKEI
Sbjct: 135 KDMNTALKKIEKDKESGMSEDELKRFEAEVQTLTDKTIKDLDDLLAKKEKEI 186
>gi|422758451|ref|ZP_16812213.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322411286|gb|EFY02194.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 185
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+LSRE +R GRA+ +LD I ++ G PLN LA ++V +++ L I+P+D +++K++
Sbjct: 19 SLSREYASIRAGRANASLLDRIQIDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K SIR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKISIRNIRRDAMDD 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KK + +D++K LEK+I + T +K D + KEKE+
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKEL 182
>gi|19745589|ref|NP_606725.1| ribosome recycling factor [Streptococcus pyogenes MGAS8232]
gi|24418654|sp|Q8P274.1|RRF_STRP8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|19747714|gb|AAL97224.1| putative ribosome recycling factor [Streptococcus pyogenes
MGAS8232]
Length = 185
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+LSRE +R GRA+ +LD I V+ G PLN LA ++V +++ L I+P+D +++K++
Sbjct: 19 SLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDD 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
KK + +D++K LEK+I + T +K D + KEKE+ G
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKELLSG 185
>gi|333381307|ref|ZP_08472989.1| ribosome-recycling factor [Dysgonomonas gadei ATCC BAA-286]
gi|332830277|gb|EGK02905.1| ribosome-recycling factor [Dysgonomonas gadei ATCC BAA-286]
Length = 187
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 106/169 (62%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+A++ L L+++R G+A+P +LD I +E G PL+ +A ++ D++T+ I P++
Sbjct: 16 MQASVEFLDETLSRIRAGKANPHILDGIKLEYYGSLTPLSGVAAINTPDARTIVIQPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LKE+E AI++S +G+ P +G+ + +IP LT+E + + K + +ED K SIR +R
Sbjct: 76 QMLKEVEKAILNSDVGITPDNNGEIIRLSIPPLTEERRKQLVKQAKQEAEDAKVSIRNAR 135
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK+ + +D K E ++ +L KY+K DD+ KEKEI
Sbjct: 136 RDAIDSIKKSVKDGVAEDMAKDAENDMQKLHDKYIKKIDDVFALKEKEI 184
>gi|384097723|ref|ZP_09998843.1| ribosome recycling factor [Imtechella halotolerans K1]
gi|383836605|gb|EID76012.1| ribosome recycling factor [Imtechella halotolerans K1]
Length = 201
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 99/168 (58%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L +EL +R G+ASP ML + V+ G + PL+ +A VSV D++T++I P++
Sbjct: 33 MDGAIKHLEKELLNIRAGKASPQMLGSVFVDYYGSQTPLHQVANVSVPDARTITIQPWER 92
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L +E AI+ + LG NP +G +I ++P LT+E + + K +E+ K SIR R
Sbjct: 93 NMLSAIEKAIMIANLGFNPMNNGDVIIISVPPLTEERRKDLVKQAKGEAEETKISIRSVR 152
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q A +KK +S +D K E ++ LT Y+K D+I KE EI
Sbjct: 153 QDANKDIKKLEAS--EDLKKNAEADVQNLTDSYIKRIDEILAVKEAEI 198
>gi|333376578|ref|ZP_08468351.1| ribosome recycling factor [Kingella kingae ATCC 23330]
gi|332967732|gb|EGK06839.1| ribosome recycling factor [Kingella kingae ATCC 23330]
Length = 185
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ L L+K+RTGRA G+LD + VE G ++P++ +A V++LD++T+ + P++
Sbjct: 13 MQRSLEVLGDNLSKVRTGRAHTGLLDQVSVEYWGSEVPISQVANVTLLDARTIGVKPFES 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N ++E AI S LGLNP G + +P LT+E + + KVV +ED + SIR R
Sbjct: 73 NMASKIEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEDGRVSIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK + +D+ +R E+ + +LT KY+ D + AKE+++
Sbjct: 133 RDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIADVDKMLAAKEEDL 182
>gi|158423320|ref|YP_001524612.1| ribosome recycling factor [Azorhizobium caulinodans ORS 571]
gi|172047942|sp|A8I468.1|RRF_AZOC5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|158330209|dbj|BAF87694.1| ribosome recycling factor [Azorhizobium caulinodans ORS 571]
Length = 186
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ +L +EL LRTGRAS +L+ I V+ G MPL +A VSV + + LS+ +D
Sbjct: 14 MAGAVTSLKQELGGLRTGRASASLLEPITVDAYGANMPLAQVATVSVPEPRLLSVQVWDR 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI S LGLNP +GQ L IP L +E + + KV K +E + ++R R
Sbjct: 74 GMVNAVEKAIRDSNLGLNPNTEGQTLRIRIPELNEERRKELVKVAHKYAEAARVAVRHVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D++KK S++ D M+RL K++ + T + + D KEKEI
Sbjct: 134 RDGMDLLKKLEKDSAISSDDMERLSKDVQKATDETISEVDQTLAHKEKEI 183
>gi|328543714|ref|YP_004303823.1| ribosome-recycling factor [Polymorphum gilvum SL003B-26A1]
gi|326413458|gb|ADZ70521.1| Ribosome-recycling factor [Polymorphum gilvum SL003B-26A1]
Length = 173
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ L EL LRTGRAS M+D I+V G MP+N +A VSV + + +++ +D
Sbjct: 1 MQGALSVLKTELAGLRTGRASSSMMDAIVVNAYGQSMPINQVATVSVPEPRMVAVQVWDK 60
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI S LGLNP VDGQ L IP L +E Q + KV K +E K +IR R
Sbjct: 61 SMVGAVERAIRESNLGLNPVVDGQLLRLPIPELNQERRQELIKVAHKYAEQAKVAIRHVR 120
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ +DM+KK ++ +D + ++ +LT + + D + + K++EI++
Sbjct: 121 RDGMDMIKKLEKDGAISQDDSRVAADDVQKLTDREIAEVDSMLEKKQQEISQ 172
>gi|229586395|ref|YP_002844896.1| ribosome recycling factor [Rickettsia africae ESF-5]
gi|259494553|sp|C3PMJ3.1|RRF_RICAE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|228021445|gb|ACP53153.1| Ribosome recycling factor [Rickettsia africae ESF-5]
Length = 186
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L EL LRTGRAS +LD + VE G KMPL+ +A +S D++T+++ +D
Sbjct: 14 MEKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E I + LGL P DGQ + IPALT+E + K+ K ED K S+R R
Sbjct: 74 SMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTELVKLAHKYGEDTKISLRNIR 133
Query: 121 QKALDMMKKAG--SSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + +KK + + KD+ L +++ +LT Y D + K KE+EI
Sbjct: 134 RDGNEALKKLAKDNVIAKDEHHSLSEQVQKLTDDYSNKVDSVIKQKEQEI 183
>gi|229491439|ref|ZP_04385263.1| ribosome recycling factor [Rhodococcus erythropolis SK121]
gi|453072265|ref|ZP_21975391.1| ribosome recycling factor [Rhodococcus qingshengii BKS 20-40]
gi|259494552|sp|C0ZY18.1|RRF_RHOE4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|226185149|dbj|BAH33253.1| ribosome recycling factor [Rhodococcus erythropolis PR4]
gi|229321724|gb|EEN87521.1| ribosome recycling factor [Rhodococcus erythropolis SK121]
gi|452757728|gb|EME16129.1| ribosome recycling factor [Rhodococcus qingshengii BKS 20-40]
Length = 185
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +RTGRA+PGM I+++ G P+ LA ++V +++ + + PY+
Sbjct: 13 MEKAVTVAKDDLGSVRTGRANPGMFSRIVIDYYGSITPITQLASINVPEARMVIVKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI +S LG+NP DG + ++P LT+E + + K ED K ++R R
Sbjct: 73 SQLNAIETAIRNSDLGVNPSNDGSIIRISVPQLTEERRRELVKQAKSKGEDSKVTLRNIR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA+D + +K G + +D++ R EKE+D+ T KYV + +++ K KE E+ E
Sbjct: 133 RKAMDELGRIQKDGEA-GEDEVGRAEKELDKTTAKYVHTVEELVKHKEAELME 184
>gi|114777897|ref|ZP_01452811.1| Ribosome recycling factor [Mariprofundus ferrooxydans PV-1]
gi|114551684|gb|EAU54236.1| Ribosome recycling factor [Mariprofundus ferrooxydans PV-1]
Length = 181
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++VAL EL +RTGRA+ +LD + V G ++P N + +SV + + L I P++
Sbjct: 9 MKKSVVALRSELATIRTGRANAALLDQVTVSYYGSEVPFNQVGNISVPEPRILMITPWEK 68
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI+ S LGLNP DG+ + +P LT++ + + K E + SIR R
Sbjct: 69 SIIGDIEKAILKSDLGLNPTSDGEVVRIMLPELTEDRRKELVKKARTIGEKARVSIRNIR 128
Query: 121 QKALDMMKKAG--SSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK +LP+D+ KRL+ I ++T KY+ D + + KE++I
Sbjct: 129 RDANDEVKKQAKDDNLPEDESKRLQDRIQKITDKYIAEVDQVIEHKEQDI 178
>gi|225437014|ref|XP_002272648.1| PREDICTED: ribosome-recycling factor, chloroplastic-like [Vitis
vinifera]
Length = 280
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME I + +RTGRA+P +LD + VE G + L +A +S DS +L + PYD
Sbjct: 108 MEKTIETVRTNFNSIRTGRANPAILDRVEVEYYGTPVSLKSIAQISTPDSASLLVQPYDK 167
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK +E AIVSS LGL P DG+ + ++P LT E + + KVVAK +E+ K ++R R
Sbjct: 168 SSLKVIEKAIVSSDLGLTPNNDGEVIRLSLPQLTSERRKELSKVVAKQTEEGKVALRNIR 227
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ AL +K L +D +K L ++ +L +Y+K + I K KEKE+
Sbjct: 228 RDALKAYEKLEKDKKLSEDNVKDLSSDLQKLIDEYMKKIETIYKQKEKEL 277
>gi|393718744|ref|ZP_10338671.1| ribosome recycling factor [Sphingomonas echinoides ATCC 14820]
Length = 185
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ +L +L LRTGRAS +LD + VE G +MPLN +A VSV + + LS+ +D
Sbjct: 13 MAGSVESLKGDLGGLRTGRASTSLLDPVTVEVYGAQMPLNQVATVSVPEPRMLSVQVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + AI S+ LGLNP VDG L IP LT+E + + K+ K +ED + + R R
Sbjct: 73 ANVGPCDKAIRSAGLGLNPIVDGTTLRLPIPDLTEERRKELAKLAGKYAEDARIAARNVR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +K + +D+ K+LE E+ +LT K + D AKEKEI
Sbjct: 133 RDGMDSLKVDEKKGLFGEDERKKLETEVQKLTDKTIAEIDAAASAKEKEI 182
>gi|227510244|ref|ZP_03940293.1| ribosome recycling factor [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227513173|ref|ZP_03943222.1| ribosome recycling factor [Lactobacillus buchneri ATCC 11577]
gi|227083554|gb|EEI18866.1| ribosome recycling factor [Lactobacillus buchneri ATCC 11577]
gi|227189896|gb|EEI69963.1| ribosome recycling factor [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 187
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A L EL +R GRA+ +L + V+ G PLN +A +S+ +++ + I PYD
Sbjct: 15 MKKAQEVLEHELGSIRAGRANASLLSGVTVDYYGAPTPLNQIASISIPEARVILITPYDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L +E I + LGL+P DG + AIPALT+E + + K V T E K ++R R
Sbjct: 75 SSLDNIEKGIYEADLGLSPANDGTAIRLAIPALTEERRKEVAKQVKATGEKSKVAVRNVR 134
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
++A+D K+ S + D++ RLE ++ +LT +KS D I KE E+ G
Sbjct: 135 REAMDTFKRGNKSEEITDDELHRLEDQVQKLTDNSIKSVDKIVADKENEVMNG 187
>gi|71907375|ref|YP_284962.1| ribosome recycling factor [Dechloromonas aromatica RCB]
gi|71846996|gb|AAZ46492.1| ribosome recycling factor [Dechloromonas aromatica RCB]
Length = 198
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ AL +L K+RTGRA G+LDH+ V+ G +P+N +A V+++D++T+ + P++
Sbjct: 26 MQKSLEALRLDLQKVRTGRAHTGLLDHVQVDYYGSMVPVNQVANVTLVDARTIGVQPWEK 85
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+++E AI LGLNP G + +PALT+E + M K+V E VK +IR R
Sbjct: 86 GMLQKVEKAIRDCDLGLNPASQGDLIRVPMPALTEERRKEMIKIVRTEGEGVKVAIRNLR 145
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+ +K A +P+D ++ + ++ +LT +Y+ D + KE E+
Sbjct: 146 RDAITHLKDALKKGEIPEDDERKAQDDVQKLTDRYIVEVDKMLATKEAEL 195
>gi|406931108|gb|EKD66421.1| hypothetical protein ACD_49C00044G0023 [uncultured bacterium (gcode
4)]
Length = 181
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 8 LSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELE 67
L E KL+ GRA+PG+++ I + G PL ++A VSV+D++TL+I P+D ++E++
Sbjct: 16 LHNEFNKLQVGRANPGLIEGIYINAYGNPQPLKNIASVSVMDAQTLTIQPWDKWLIREID 75
Query: 68 CAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMM 127
I + LGLNP+ + + ++ IP LT+E + + K K +ED K +IR RQ L +
Sbjct: 76 KWISDAGLGLNPQNNWESIMIKIPTLTEERRRDLAKFAKKLAEDGKIAIRNIRQDYLKKI 135
Query: 128 KKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
K A SS + +D +K+ EKE+ + + V+ D + K KE+EI
Sbjct: 136 KNAESSKEISEDIVKQNEKELQKFVDEEVEKVDKMLKHKEEEI 178
>gi|190360295|sp|A8F0R2.2|RRF_RICM5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
Length = 186
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L EL LRTGRAS +LD + VE G KMPL+ +A +S D++T+++ +D
Sbjct: 14 MEKALKVLDHELKGLRTGRASINLLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E I + LGL P DGQ + IP LT+E Q + K+ K ED K S+R R
Sbjct: 74 SMVSSVEKGITIANLGLTPATDGQLIRLPIPTLTEERRQELVKLAHKYGEDTKISLRNIR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + +KK + + KD+ L +++ +LT Y D + K KE+EI
Sbjct: 134 RDGNEELKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEI 183
>gi|400293454|ref|ZP_10795326.1| ribosome recycling factor [Actinomyces naeslundii str. Howell 279]
gi|399901459|gb|EJN84342.1| ribosome recycling factor [Actinomyces naeslundii str. Howell 279]
Length = 185
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A EL +RTGRA+P M + I+V+ G PL LA +++ +++T+ ++P+D
Sbjct: 13 MDKALQAAKSELASIRTGRANPSMFNGIVVDYYGAPTPLQQLASLTIPEARTVLVSPFDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++ AI S LG+NP DG + +PALT+E + K+ +ED + +R R
Sbjct: 73 SAMKDIVTAIRESDLGVNPTDDGTVIRVTLPALTEERRKDYVKLARSRAEDSRVQVRGIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KA L+ +KK G + +D +KR E E+D LTK++V+ D AKE E+ E
Sbjct: 133 GKAKKELEAIKKDGEA-GEDDVKRAEHELDGLTKRFVEQIDAALSAKESELLE 184
>gi|343926730|ref|ZP_08766227.1| ribosome-recycling factor [Gordonia alkanivorans NBRC 16433]
gi|343763329|dbj|GAA13153.1| ribosome-recycling factor [Gordonia alkanivorans NBRC 16433]
Length = 185
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ ++ +RTGRA+P M + I +E G P+ +A ++ + + + I PY+
Sbjct: 13 MEKAVNVAKEDMGSIRTGRANPAMFNRINIEYYGSMTPVTQVASINTPEPRLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TL+++E AI +S LG+NP DG + AIP LT+E + + K ED K +IR R
Sbjct: 73 STLRDIETAIRNSDLGVNPTNDGTIIRVAIPQLTEERRRDLVKQAKGKGEDAKVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D +K+ +D++ R EKE+D+ T YV D++ K KE E+ E
Sbjct: 133 RKAADELKRIQKDGEAGEDEVTRAEKELDKTTATYVHQVDELVKHKEDELLE 184
>gi|422418912|ref|ZP_16495867.1| ribosome recycling factor, partial [Listeria seeligeri FSL N1-067]
gi|313633414|gb|EFS00248.1| ribosome recycling factor [Listeria seeligeri FSL N1-067]
Length = 176
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A AL+R+L +R GRA+ +LD + V+ G P+N +A +S+ +++ L I PYD
Sbjct: 4 MEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISIPEARMLLITPYDK 63
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+E AI+ S LGL P DG L +IP LT+E + + K V K +E+ K ++R R
Sbjct: 64 TILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIR 123
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A + +KK + +D ++ +++ +LT + +K+ D+I K KE EI E
Sbjct: 124 REANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDNITKDKEAEILE 175
>gi|297617174|ref|YP_003702333.1| ribosome recycling factor [Syntrophothermus lipocalidus DSM 12680]
gi|297145011|gb|ADI01768.1| ribosome recycling factor [Syntrophothermus lipocalidus DSM 12680]
Length = 188
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + L ++L LR GRA+P MLD I VE G P+N L + V + + L I P+D
Sbjct: 16 MKKTVEHLVKDLASLRAGRANPAMLDKITVEYYGQPTPINQLGNIGVPEPRMLVIQPWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ E+E AI+ S LG+NP DG + AIP LT+E + M K+V K +E+ K ++R R
Sbjct: 76 TAIPEIEKAILKSDLGVNPTNDGNVIRIAIPPLTEERRKEMVKMVRKRAEEAKVAVRNLR 135
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A D +K A + +D+ K+ EI +LT +K D + + KEK+I E
Sbjct: 136 REANDEIKLAEKEKLISEDEAKKRLDEIQKLTDNTIKDIDKVLQTKEKDIME 187
>gi|227551763|ref|ZP_03981812.1| ribosome recycling factor [Enterococcus faecium TX1330]
gi|257878533|ref|ZP_05658186.1| ribosome recycling factor [Enterococcus faecium 1,230,933]
gi|257883168|ref|ZP_05662821.1| ribosome recycling factor [Enterococcus faecium 1,231,502]
gi|257884335|ref|ZP_05663988.1| ribosome recycling factor [Enterococcus faecium 1,231,501]
gi|257887076|ref|ZP_05666729.1| ribosome recycling factor [Enterococcus faecium 1,141,733]
gi|257889270|ref|ZP_05668923.1| ribosome recycling factor [Enterococcus faecium 1,231,410]
gi|257895641|ref|ZP_05675294.1| ribosome recycling factor [Enterococcus faecium Com12]
gi|257898231|ref|ZP_05677884.1| ribosome recycling factor [Enterococcus faecium Com15]
gi|260560118|ref|ZP_05832296.1| ribosome recycling factor [Enterococcus faecium C68]
gi|261208147|ref|ZP_05922821.1| ribosome recycling factor [Enterococcus faecium TC 6]
gi|289566196|ref|ZP_06446629.1| ribosome recycling factor [Enterococcus faecium D344SRF]
gi|293377748|ref|ZP_06623937.1| ribosome recycling factor [Enterococcus faecium PC4.1]
gi|293556642|ref|ZP_06675207.1| ribosome recycling factor [Enterococcus faecium E1039]
gi|293560147|ref|ZP_06676650.1| ribosome recycling factor [Enterococcus faecium E1162]
gi|293567410|ref|ZP_06678757.1| ribosome recycling factor [Enterococcus faecium E1071]
gi|293570620|ref|ZP_06681671.1| ribosome recycling factor [Enterococcus faecium E980]
gi|294613944|ref|ZP_06693879.1| ribosome recycling factor [Enterococcus faecium E1636]
gi|294620329|ref|ZP_06699645.1| ribosome recycling factor [Enterococcus faecium E1679]
gi|294620756|ref|ZP_06699963.1| ribosome recycling factor [Enterococcus faecium U0317]
gi|314937498|ref|ZP_07844831.1| ribosome recycling factor [Enterococcus faecium TX0133a04]
gi|314942157|ref|ZP_07849011.1| ribosome recycling factor [Enterococcus faecium TX0133C]
gi|314947503|ref|ZP_07850918.1| ribosome recycling factor [Enterococcus faecium TX0082]
gi|314951490|ref|ZP_07854539.1| ribosome recycling factor [Enterococcus faecium TX0133A]
gi|314992580|ref|ZP_07857998.1| ribosome recycling factor [Enterococcus faecium TX0133B]
gi|314995485|ref|ZP_07860585.1| ribosome recycling factor [Enterococcus faecium TX0133a01]
gi|383329043|ref|YP_005354927.1| ribosome recycling factor [Enterococcus faecium Aus0004]
gi|389868866|ref|YP_006376289.1| ribosome recycling factor [Enterococcus faecium DO]
gi|406580781|ref|ZP_11055970.1| ribosome recycling factor [Enterococcus sp. GMD4E]
gi|406583394|ref|ZP_11058468.1| ribosome recycling factor [Enterococcus sp. GMD3E]
gi|406585399|ref|ZP_11060389.1| ribosome recycling factor [Enterococcus sp. GMD2E]
gi|406590576|ref|ZP_11064939.1| ribosome recycling factor [Enterococcus sp. GMD1E]
gi|410937304|ref|ZP_11369165.1| ribosome recycling factor [Enterococcus sp. GMD5E]
gi|415899572|ref|ZP_11551637.1| ribosome recycling factor [Enterococcus faecium E4453]
gi|416141214|ref|ZP_11599351.1| ribosome recycling factor [Enterococcus faecium E4452]
gi|424766476|ref|ZP_18193829.1| ribosome recycling factor [Enterococcus faecalis TX1337RF]
gi|424789287|ref|ZP_18215962.1| ribosome recycling factor [Enterococcus faecium V689]
gi|424797614|ref|ZP_18223191.1| ribosome recycling factor [Enterococcus faecium S447]
gi|424834693|ref|ZP_18259390.1| ribosome recycling factor [Enterococcus faecium R501]
gi|424858792|ref|ZP_18282821.1| ribosome recycling factor [Enterococcus faecium R499]
gi|424864997|ref|ZP_18288883.1| ribosome recycling factor [Enterococcus faecium R497]
gi|424945246|ref|ZP_18360954.1| ribosome recycling factor [Enterococcus faecium R496]
gi|424955123|ref|ZP_18369982.1| ribosome recycling factor [Enterococcus faecium R494]
gi|424958136|ref|ZP_18372802.1| ribosome recycling factor [Enterococcus faecium R446]
gi|424961848|ref|ZP_18376262.1| ribosome recycling factor [Enterococcus faecium P1986]
gi|424964221|ref|ZP_18378336.1| ribosome recycling factor [Enterococcus faecium P1190]
gi|424967997|ref|ZP_18381661.1| ribosome recycling factor [Enterococcus faecium P1140]
gi|424969985|ref|ZP_18383527.1| ribosome recycling factor [Enterococcus faecium P1139]
gi|424973427|ref|ZP_18386705.1| ribosome recycling factor [Enterococcus faecium P1137]
gi|424976817|ref|ZP_18389881.1| ribosome recycling factor [Enterococcus faecium P1123]
gi|424981141|ref|ZP_18393892.1| ribosome recycling factor [Enterococcus faecium ERV99]
gi|424983745|ref|ZP_18396318.1| ribosome recycling factor [Enterococcus faecium ERV69]
gi|424988607|ref|ZP_18400919.1| ribosome recycling factor [Enterococcus faecium ERV38]
gi|424992634|ref|ZP_18404682.1| ribosome recycling factor [Enterococcus faecium ERV26]
gi|424993468|ref|ZP_18405460.1| ribosome recycling factor [Enterococcus faecium ERV168]
gi|424997756|ref|ZP_18409496.1| ribosome recycling factor [Enterococcus faecium ERV165]
gi|425002096|ref|ZP_18413555.1| ribosome recycling factor [Enterococcus faecium ERV161]
gi|425003796|ref|ZP_18415136.1| ribosome recycling factor [Enterococcus faecium ERV102]
gi|425007593|ref|ZP_18418714.1| ribosome recycling factor [Enterococcus faecium ERV1]
gi|425011871|ref|ZP_18422730.1| ribosome recycling factor [Enterococcus faecium E422]
gi|425014959|ref|ZP_18425603.1| ribosome recycling factor [Enterococcus faecium E417]
gi|425018287|ref|ZP_18428742.1| ribosome recycling factor [Enterococcus faecium C621]
gi|425019916|ref|ZP_18430248.1| ribosome recycling factor [Enterococcus faecium C497]
gi|425025814|ref|ZP_18434702.1| ribosome recycling factor [Enterococcus faecium C1904]
gi|425031950|ref|ZP_18437043.1| ribosome recycling factor [Enterococcus faecium 515]
gi|425034609|ref|ZP_18439490.1| ribosome recycling factor [Enterococcus faecium 514]
gi|425039306|ref|ZP_18443858.1| ribosome recycling factor [Enterococcus faecium 513]
gi|425040720|ref|ZP_18445172.1| ribosome recycling factor [Enterococcus faecium 511]
gi|425045080|ref|ZP_18449202.1| ribosome recycling factor [Enterococcus faecium 510]
gi|425048193|ref|ZP_18452114.1| ribosome recycling factor [Enterococcus faecium 509]
gi|425052078|ref|ZP_18455709.1| ribosome recycling factor [Enterococcus faecium 506]
gi|425054647|ref|ZP_18458152.1| ribosome recycling factor [Enterococcus faecium 505]
gi|425059517|ref|ZP_18462853.1| ribosome recycling factor [Enterococcus faecium 504]
gi|425059592|ref|ZP_18462923.1| ribosome recycling factor [Enterococcus faecium 503]
gi|427396285|ref|ZP_18889044.1| ribosome-recycling factor [Enterococcus durans FB129-CNAB-4]
gi|430819857|ref|ZP_19438501.1| ribosome-recycling factor [Enterococcus faecium E0045]
gi|430822632|ref|ZP_19441210.1| ribosome-recycling factor [Enterococcus faecium E0120]
gi|430825597|ref|ZP_19443801.1| ribosome-recycling factor [Enterococcus faecium E0164]
gi|430827730|ref|ZP_19445862.1| ribosome-recycling factor [Enterococcus faecium E0269]
gi|430830816|ref|ZP_19448872.1| ribosome-recycling factor [Enterococcus faecium E0333]
gi|430832981|ref|ZP_19450994.1| ribosome-recycling factor [Enterococcus faecium E0679]
gi|430838219|ref|ZP_19456167.1| ribosome-recycling factor [Enterococcus faecium E0688]
gi|430841502|ref|ZP_19459421.1| ribosome-recycling factor [Enterococcus faecium E1007]
gi|430843932|ref|ZP_19461830.1| ribosome-recycling factor [Enterococcus faecium E1050]
gi|430845931|ref|ZP_19463796.1| ribosome-recycling factor [Enterococcus faecium E1133]
gi|430849577|ref|ZP_19467350.1| ribosome-recycling factor [Enterococcus faecium E1185]
gi|430851774|ref|ZP_19469509.1| ribosome-recycling factor [Enterococcus faecium E1258]
gi|430854924|ref|ZP_19472635.1| ribosome-recycling factor [Enterococcus faecium E1392]
gi|430858027|ref|ZP_19475656.1| ribosome-recycling factor [Enterococcus faecium E1552]
gi|430860309|ref|ZP_19477913.1| ribosome-recycling factor [Enterococcus faecium E1573]
gi|430865192|ref|ZP_19480950.1| ribosome-recycling factor [Enterococcus faecium E1574]
gi|430949037|ref|ZP_19485956.1| ribosome-recycling factor [Enterococcus faecium E1576]
gi|431005360|ref|ZP_19489006.1| ribosome-recycling factor [Enterococcus faecium E1578]
gi|431033133|ref|ZP_19490979.1| ribosome-recycling factor [Enterococcus faecium E1590]
gi|431073185|ref|ZP_19494729.1| ribosome-recycling factor [Enterococcus faecium E1604]
gi|431108221|ref|ZP_19497372.1| ribosome-recycling factor [Enterococcus faecium E1613]
gi|431146249|ref|ZP_19499146.1| ribosome-recycling factor [Enterococcus faecium E1620]
gi|431229883|ref|ZP_19502086.1| ribosome-recycling factor [Enterococcus faecium E1622]
gi|431252274|ref|ZP_19504332.1| ribosome-recycling factor [Enterococcus faecium E1623]
gi|431292255|ref|ZP_19506803.1| ribosome-recycling factor [Enterococcus faecium E1626]
gi|431370251|ref|ZP_19509950.1| ribosome-recycling factor [Enterococcus faecium E1627]
gi|431412559|ref|ZP_19511994.1| ribosome-recycling factor [Enterococcus faecium E1630]
gi|431497587|ref|ZP_19514741.1| ribosome-recycling factor [Enterococcus faecium E1634]
gi|431542018|ref|ZP_19518247.1| ribosome-recycling factor [Enterococcus faecium E1731]
gi|431586086|ref|ZP_19520601.1| ribosome-recycling factor [Enterococcus faecium E1861]
gi|431651875|ref|ZP_19523804.1| ribosome-recycling factor [Enterococcus faecium E1904]
gi|431737464|ref|ZP_19526418.1| ribosome-recycling factor [Enterococcus faecium E1972]
gi|431739906|ref|ZP_19528825.1| ribosome-recycling factor [Enterococcus faecium E2039]
gi|431743023|ref|ZP_19531904.1| ribosome-recycling factor [Enterococcus faecium E2071]
gi|431746289|ref|ZP_19535123.1| ribosome-recycling factor [Enterococcus faecium E2134]
gi|431750009|ref|ZP_19538736.1| ribosome-recycling factor [Enterococcus faecium E2297]
gi|431752112|ref|ZP_19540797.1| ribosome-recycling factor [Enterococcus faecium E2620]
gi|431754933|ref|ZP_19543593.1| ribosome-recycling factor [Enterococcus faecium E2883]
gi|431756936|ref|ZP_19545568.1| ribosome-recycling factor [Enterococcus faecium E3083]
gi|431759447|ref|ZP_19548061.1| ribosome-recycling factor [Enterococcus faecium E3346]
gi|431762163|ref|ZP_19550725.1| ribosome-recycling factor [Enterococcus faecium E3548]
gi|431764220|ref|ZP_19552763.1| ribosome-recycling factor [Enterococcus faecium E4215]
gi|431767310|ref|ZP_19555764.1| ribosome-recycling factor [Enterococcus faecium E1321]
gi|431770928|ref|ZP_19559322.1| ribosome-recycling factor [Enterococcus faecium E1644]
gi|431772381|ref|ZP_19560722.1| ribosome-recycling factor [Enterococcus faecium E2369]
gi|431775673|ref|ZP_19563945.1| ribosome-recycling factor [Enterococcus faecium E2560]
gi|431778894|ref|ZP_19567099.1| ribosome-recycling factor [Enterococcus faecium E4389]
gi|431781784|ref|ZP_19569927.1| ribosome-recycling factor [Enterococcus faecium E6012]
gi|431785832|ref|ZP_19573854.1| ribosome-recycling factor [Enterococcus faecium E6045]
gi|447912463|ref|YP_007393875.1| Ribosome recycling factor [Enterococcus faecium NRRL B-2354]
gi|227179068|gb|EEI60040.1| ribosome recycling factor [Enterococcus faecium TX1330]
gi|257812761|gb|EEV41519.1| ribosome recycling factor [Enterococcus faecium 1,230,933]
gi|257818826|gb|EEV46154.1| ribosome recycling factor [Enterococcus faecium 1,231,502]
gi|257820173|gb|EEV47321.1| ribosome recycling factor [Enterococcus faecium 1,231,501]
gi|257823130|gb|EEV50062.1| ribosome recycling factor [Enterococcus faecium 1,141,733]
gi|257825630|gb|EEV52256.1| ribosome recycling factor [Enterococcus faecium 1,231,410]
gi|257832206|gb|EEV58627.1| ribosome recycling factor [Enterococcus faecium Com12]
gi|257836143|gb|EEV61217.1| ribosome recycling factor [Enterococcus faecium Com15]
gi|260073953|gb|EEW62277.1| ribosome recycling factor [Enterococcus faecium C68]
gi|260077581|gb|EEW65298.1| ribosome recycling factor [Enterococcus faecium TC 6]
gi|289161974|gb|EFD09841.1| ribosome recycling factor [Enterococcus faecium D344SRF]
gi|291589807|gb|EFF21608.1| ribosome recycling factor [Enterococcus faecium E1071]
gi|291593219|gb|EFF24793.1| ribosome recycling factor [Enterococcus faecium E1636]
gi|291593441|gb|EFF24999.1| ribosome recycling factor [Enterococcus faecium E1679]
gi|291599736|gb|EFF30746.1| ribosome recycling factor [Enterococcus faecium U0317]
gi|291601177|gb|EFF31464.1| ribosome recycling factor [Enterococcus faecium E1039]
gi|291605880|gb|EFF35311.1| ribosome recycling factor [Enterococcus faecium E1162]
gi|291609291|gb|EFF38562.1| ribosome recycling factor [Enterococcus faecium E980]
gi|292643748|gb|EFF61869.1| ribosome recycling factor [Enterococcus faecium PC4.1]
gi|313590319|gb|EFR69164.1| ribosome recycling factor [Enterococcus faecium TX0133a01]
gi|313592872|gb|EFR71717.1| ribosome recycling factor [Enterococcus faecium TX0133B]
gi|313596330|gb|EFR75175.1| ribosome recycling factor [Enterococcus faecium TX0133A]
gi|313599080|gb|EFR77925.1| ribosome recycling factor [Enterococcus faecium TX0133C]
gi|313643139|gb|EFS07719.1| ribosome recycling factor [Enterococcus faecium TX0133a04]
gi|313646053|gb|EFS10633.1| ribosome recycling factor [Enterococcus faecium TX0082]
gi|364089297|gb|EHM31997.1| ribosome recycling factor [Enterococcus faecium E4453]
gi|364090242|gb|EHM32853.1| ribosome recycling factor [Enterococcus faecium E4452]
gi|378938737|gb|AFC63809.1| ribosome recycling factor [Enterococcus faecium Aus0004]
gi|388534115|gb|AFK59307.1| ribosome recycling factor [Enterococcus faecium DO]
gi|402410451|gb|EJV42854.1| ribosome recycling factor [Enterococcus faecium TX1337RF]
gi|402920729|gb|EJX41219.1| ribosome recycling factor [Enterococcus faecium S447]
gi|402922027|gb|EJX42434.1| ribosome recycling factor [Enterococcus faecium R501]
gi|402922334|gb|EJX42728.1| ribosome recycling factor [Enterococcus faecium V689]
gi|402926823|gb|EJX46830.1| ribosome recycling factor [Enterococcus faecium R499]
gi|402934844|gb|EJX54142.1| ribosome recycling factor [Enterococcus faecium R494]
gi|402935433|gb|EJX54682.1| ribosome recycling factor [Enterococcus faecium R496]
gi|402939470|gb|EJX58377.1| ribosome recycling factor [Enterococcus faecium R497]
gi|402941535|gb|EJX60250.1| ribosome recycling factor [Enterococcus faecium R446]
gi|402942441|gb|EJX61028.1| ribosome recycling factor [Enterococcus faecium P1986]
gi|402947207|gb|EJX65430.1| ribosome recycling factor [Enterococcus faecium P1190]
gi|402953142|gb|EJX70880.1| ribosome recycling factor [Enterococcus faecium P1140]
gi|402958490|gb|EJX75801.1| ribosome recycling factor [Enterococcus faecium P1137]
gi|402962864|gb|EJX79771.1| ribosome recycling factor [Enterococcus faecium P1139]
gi|402964486|gb|EJX81261.1| ribosome recycling factor [Enterococcus faecium ERV99]
gi|402968343|gb|EJX84829.1| ribosome recycling factor [Enterococcus faecium P1123]
gi|402970655|gb|EJX86973.1| ribosome recycling factor [Enterococcus faecium ERV69]
gi|402971629|gb|EJX87893.1| ribosome recycling factor [Enterococcus faecium ERV38]
gi|402972369|gb|EJX88575.1| ribosome recycling factor [Enterococcus faecium ERV26]
gi|402982538|gb|EJX97999.1| ribosome recycling factor [Enterococcus faecium ERV168]
gi|402984561|gb|EJX99863.1| ribosome recycling factor [Enterococcus faecium ERV161]
gi|402985436|gb|EJY00645.1| ribosome recycling factor [Enterococcus faecium ERV165]
gi|402991051|gb|EJY05881.1| ribosome recycling factor [Enterococcus faecium ERV102]
gi|402994624|gb|EJY09144.1| ribosome recycling factor [Enterococcus faecium ERV1]
gi|402995288|gb|EJY09759.1| ribosome recycling factor [Enterococcus faecium E422]
gi|402997220|gb|EJY11565.1| ribosome recycling factor [Enterococcus faecium E417]
gi|403002490|gb|EJY16461.1| ribosome recycling factor [Enterococcus faecium C621]
gi|403006232|gb|EJY19894.1| ribosome recycling factor [Enterococcus faecium C1904]
gi|403010482|gb|EJY23858.1| ribosome recycling factor [Enterococcus faecium C497]
gi|403014397|gb|EJY27406.1| ribosome recycling factor [Enterococcus faecium 515]
gi|403016660|gb|EJY29468.1| ribosome recycling factor [Enterococcus faecium 513]
gi|403019977|gb|EJY32544.1| ribosome recycling factor [Enterococcus faecium 514]
gi|403027896|gb|EJY39748.1| ribosome recycling factor [Enterococcus faecium 511]
gi|403027992|gb|EJY39839.1| ribosome recycling factor [Enterococcus faecium 510]
gi|403031400|gb|EJY43009.1| ribosome recycling factor [Enterococcus faecium 509]
gi|403034799|gb|EJY46226.1| ribosome recycling factor [Enterococcus faecium 504]
gi|403035599|gb|EJY46985.1| ribosome recycling factor [Enterococcus faecium 505]
gi|403035872|gb|EJY47252.1| ribosome recycling factor [Enterococcus faecium 506]
gi|403043478|gb|EJY54387.1| ribosome recycling factor [Enterococcus faecium 503]
gi|404453536|gb|EKA00589.1| ribosome recycling factor [Enterococcus sp. GMD4E]
gi|404456756|gb|EKA03387.1| ribosome recycling factor [Enterococcus sp. GMD3E]
gi|404462686|gb|EKA08399.1| ribosome recycling factor [Enterococcus sp. GMD2E]
gi|404469160|gb|EKA13986.1| ribosome recycling factor [Enterococcus sp. GMD1E]
gi|410734415|gb|EKQ76335.1| ribosome recycling factor [Enterococcus sp. GMD5E]
gi|425722955|gb|EKU85846.1| ribosome-recycling factor [Enterococcus durans FB129-CNAB-4]
gi|430440060|gb|ELA50337.1| ribosome-recycling factor [Enterococcus faecium E0045]
gi|430443209|gb|ELA53206.1| ribosome-recycling factor [Enterococcus faecium E0120]
gi|430446062|gb|ELA55761.1| ribosome-recycling factor [Enterococcus faecium E0164]
gi|430482405|gb|ELA59523.1| ribosome-recycling factor [Enterococcus faecium E0333]
gi|430484332|gb|ELA61353.1| ribosome-recycling factor [Enterococcus faecium E0269]
gi|430486436|gb|ELA63272.1| ribosome-recycling factor [Enterococcus faecium E0679]
gi|430491963|gb|ELA68404.1| ribosome-recycling factor [Enterococcus faecium E0688]
gi|430494278|gb|ELA70528.1| ribosome-recycling factor [Enterococcus faecium E1007]
gi|430496522|gb|ELA72581.1| ribosome-recycling factor [Enterococcus faecium E1050]
gi|430537328|gb|ELA77671.1| ribosome-recycling factor [Enterococcus faecium E1185]
gi|430539751|gb|ELA79990.1| ribosome-recycling factor [Enterococcus faecium E1133]
gi|430542356|gb|ELA82464.1| ribosome-recycling factor [Enterococcus faecium E1258]
gi|430545979|gb|ELA85945.1| ribosome-recycling factor [Enterococcus faecium E1552]
gi|430547462|gb|ELA87385.1| ribosome-recycling factor [Enterococcus faecium E1392]
gi|430552746|gb|ELA92474.1| ribosome-recycling factor [Enterococcus faecium E1573]
gi|430553270|gb|ELA92971.1| ribosome-recycling factor [Enterococcus faecium E1574]
gi|430557882|gb|ELA97318.1| ribosome-recycling factor [Enterococcus faecium E1576]
gi|430561393|gb|ELB00661.1| ribosome-recycling factor [Enterococcus faecium E1578]
gi|430564234|gb|ELB03418.1| ribosome-recycling factor [Enterococcus faecium E1590]
gi|430566757|gb|ELB05853.1| ribosome-recycling factor [Enterococcus faecium E1604]
gi|430569345|gb|ELB08349.1| ribosome-recycling factor [Enterococcus faecium E1613]
gi|430573869|gb|ELB12647.1| ribosome-recycling factor [Enterococcus faecium E1622]
gi|430575789|gb|ELB14486.1| ribosome-recycling factor [Enterococcus faecium E1620]
gi|430578700|gb|ELB17252.1| ribosome-recycling factor [Enterococcus faecium E1623]
gi|430582167|gb|ELB20595.1| ribosome-recycling factor [Enterococcus faecium E1626]
gi|430583998|gb|ELB22356.1| ribosome-recycling factor [Enterococcus faecium E1627]
gi|430588522|gb|ELB26714.1| ribosome-recycling factor [Enterococcus faecium E1634]
gi|430589514|gb|ELB27642.1| ribosome-recycling factor [Enterococcus faecium E1630]
gi|430593065|gb|ELB31052.1| ribosome-recycling factor [Enterococcus faecium E1731]
gi|430593264|gb|ELB31250.1| ribosome-recycling factor [Enterococcus faecium E1861]
gi|430599121|gb|ELB36837.1| ribosome-recycling factor [Enterococcus faecium E1972]
gi|430600928|gb|ELB38554.1| ribosome-recycling factor [Enterococcus faecium E1904]
gi|430604033|gb|ELB41533.1| ribosome-recycling factor [Enterococcus faecium E2039]
gi|430607387|gb|ELB44707.1| ribosome-recycling factor [Enterococcus faecium E2071]
gi|430609058|gb|ELB46264.1| ribosome-recycling factor [Enterococcus faecium E2134]
gi|430610482|gb|ELB47626.1| ribosome-recycling factor [Enterococcus faecium E2297]
gi|430614176|gb|ELB51165.1| ribosome-recycling factor [Enterococcus faecium E2620]
gi|430618761|gb|ELB55602.1| ribosome-recycling factor [Enterococcus faecium E2883]
gi|430620790|gb|ELB57592.1| ribosome-recycling factor [Enterococcus faecium E3083]
gi|430624855|gb|ELB61505.1| ribosome-recycling factor [Enterococcus faecium E3548]
gi|430626247|gb|ELB62833.1| ribosome-recycling factor [Enterococcus faecium E3346]
gi|430631114|gb|ELB67444.1| ribosome-recycling factor [Enterococcus faecium E1321]
gi|430631405|gb|ELB67727.1| ribosome-recycling factor [Enterococcus faecium E4215]
gi|430634378|gb|ELB70504.1| ribosome-recycling factor [Enterococcus faecium E1644]
gi|430638069|gb|ELB74050.1| ribosome-recycling factor [Enterococcus faecium E2369]
gi|430642942|gb|ELB78708.1| ribosome-recycling factor [Enterococcus faecium E2560]
gi|430643375|gb|ELB79119.1| ribosome-recycling factor [Enterococcus faecium E4389]
gi|430646703|gb|ELB82169.1| ribosome-recycling factor [Enterococcus faecium E6045]
gi|430648789|gb|ELB84186.1| ribosome-recycling factor [Enterococcus faecium E6012]
gi|445188172|gb|AGE29814.1| Ribosome recycling factor [Enterococcus faecium NRRL B-2354]
Length = 185
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A L REL ++R GRA+ +LD I V G PLN +A + + +++ L I P+D
Sbjct: 13 MKKAAQNLQRELGQIRAGRANASLLDRITVNYYGAPTPLNQMASIQIPEARVLMITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+++E AI++S +G++P DG + IP LT+E + + K V K +E+ K +IR R
Sbjct: 73 SILQDVEKAIMASDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENAKIAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D KK + +D ++ LEK++ LT +K D I KEKE+ E
Sbjct: 133 RDAIDEYKKQQKNGDITEDDLRGLEKDVQTLTDNSIKEVDKIAADKEKELLE 184
>gi|146328643|ref|YP_001209628.1| ribosome recycling factor [Dichelobacter nodosus VCS1703A]
gi|166230785|sp|A5EV26.1|RRF_DICNV RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|146232113|gb|ABQ13091.1| ribosome recycling factor [Dichelobacter nodosus VCS1703A]
Length = 185
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ L +LTK+RTGRA+ +LDHI VE G +PL+ A V+V D +TLSI ++
Sbjct: 13 MKKSVQTLEADLTKIRTGRANVSLLDHIEVEYYGAMVPLSQAANVNVTDHRTLSIQIWER 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI++S LGL P GQ + +P LT+E + M KVV E K ++R R
Sbjct: 73 DMVAKIEKAIINSDLGLTPNTAGQNIHINLPPLTEERRKEMVKVVKNEGEQAKIAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + K + +D+ ++ E+EI ++T +V D + AKEKE+ E
Sbjct: 133 RDANQSLSKLLTQKEISEDEQRKSEEEIQKITDHFVAEIDKVLMAKEKELME 184
>gi|256544891|ref|ZP_05472262.1| ribosome recycling factor [Anaerococcus vaginalis ATCC 51170]
gi|256399390|gb|EEU12996.1| ribosome recycling factor [Anaerococcus vaginalis ATCC 51170]
Length = 185
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A + ++K+R GRA+ +LD I G + P+N A +S + + L I P+D
Sbjct: 13 MKKACESFEIRISKIRAGRANDSILDGITFSYYGTQTPINQAATISTPEPRLLVIKPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +KE+E AI S LG+NP+ DG+ + PALT+E + + K V++ SED K IR R
Sbjct: 73 SNIKEIEKAINKSDLGINPQNDGEVIRLPFPALTEERRKELTKQVSEYSEDSKIQIRNIR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ ++D+ KKA S L +D + +E++I ++TKKY+ + ++K KE+ E
Sbjct: 133 RDSMDIAKKAEKSADLTEDDLFSIEEDIQKITKKYIDKVEKTVESKNKELLE 184
>gi|254556881|ref|YP_003063298.1| ribosome recycling factor [Lactobacillus plantarum JDM1]
gi|300768196|ref|ZP_07078101.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308180824|ref|YP_003924952.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380032819|ref|YP_004889810.1| ribosome recycling factor [Lactobacillus plantarum WCFS1]
gi|418275563|ref|ZP_12890886.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum
NC8]
gi|34924944|sp|Q88VJ7.1|RRF_LACPL RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254045808|gb|ACT62601.1| ribosome recycling factor [Lactobacillus plantarum JDM1]
gi|300494260|gb|EFK29423.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308046315|gb|ADN98858.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|342242062|emb|CCC79296.1| ribosome recycling factor [Lactobacillus plantarum WCFS1]
gi|376009114|gb|EHS82443.1| ribosome recycling factor [Lactobacillus plantarum subsp. plantarum
NC8]
Length = 187
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 99/173 (57%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL REL +R GRA+ +L+ I + G + PLN +A ++V + + L + P+D
Sbjct: 15 MKKAEAALQRELGNIRAGRANASLLNRISADYYGAQTPLNQMAAITVPEPRVLMVTPFDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ LKE+E AI++S LG++P DG + IP LT+E + + K V E K ++R R
Sbjct: 75 SALKEIEKAILASDLGISPANDGSAIRLVIPQLTEERRKELAKDVKAEGERAKVAVRNVR 134
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
+ A++ +KK DQ+ +LE + +LT + K D I KEKEI EG
Sbjct: 135 RDAMEALKKGHKDGQFTDDQLHQLEDQAQKLTDQAGKDVDAIVADKEKEILEG 187
>gi|219127660|ref|XP_002184049.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404280|gb|EEC44227.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 225
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ ++ L +RTGRAS +LD + V+ GV+ PLN +A +SV ++ LSI+PYD
Sbjct: 53 MAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQLSIDPYDK 112
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+L +E AIV S LGL DG + IP++T++ + M K+ E+ K ++R R
Sbjct: 113 TSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEGKVAVRNIR 172
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD +KK S + +D+MK + + +LT K VK D++ AKEKE+
Sbjct: 173 RDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEV 222
>gi|320532043|ref|ZP_08032932.1| ribosome recycling factor [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320135743|gb|EFW27802.1| ribosome recycling factor [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 185
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A EL +RTGRA+P M + I+V+ G PL LA +++ +++T+ ++P+D
Sbjct: 13 MDKALQAAKSELATIRTGRANPSMFNGIVVDYYGAPTPLQQLASLTIPEARTVLVSPFDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++ AI S LG+NP DG + +PALT+E + K+ +ED + +R R
Sbjct: 73 SAMKDIVTAIRESDLGVNPTDDGTVIRVTLPALTEERRKDYVKLARSRAEDSRVQVRGIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KA L+ +KK G + +D +KR E E+D LTK++V+ D AKE E+ E
Sbjct: 133 GKAKKELEAIKKDGEA-GEDDVKRAEHELDGLTKRFVEQIDAALSAKESELLE 184
>gi|422415810|ref|ZP_16492767.1| ribosome recycling factor [Listeria innocua FSL J1-023]
gi|313623929|gb|EFR94035.1| ribosome recycling factor [Listeria innocua FSL J1-023]
Length = 185
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A AL+R+L +R GRA+ +LD + V+ G P+N +A +SV +++ L I PYD
Sbjct: 13 MEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISVPEARMLLITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+E AI+ S LGL P DG L +IP LT+E + + K V K +E+ K ++R R
Sbjct: 73 TILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A + +KK + +D ++ +++ +LT + +K+ D I K KE EI E
Sbjct: 133 REANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILE 184
>gi|392949071|ref|ZP_10314666.1| Ribosome recycling factor [Lactobacillus pentosus KCA1]
gi|334880348|emb|CCB81074.1| ribosome-recycling factor (RRF) (Ribosome-releasi ng factor)
[Lactobacillus pentosus MP-10]
gi|339639046|emb|CCC18260.1| ribosome-recycling factor (RRF) (ribosome-releasing factor)
[Lactobacillus pentosus IG1]
gi|392435660|gb|EIW13589.1| Ribosome recycling factor [Lactobacillus pentosus KCA1]
Length = 187
Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 99/173 (57%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL REL +R GRA+ +L+ I + G + PLN +A ++V + + L + P+D
Sbjct: 15 MKKAEAALQRELGNIRAGRANASLLNRISADYYGAQTPLNQMAAITVPEPRVLMVTPFDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ LKE+E AI++S LG++P DG + IP LT+E + + K V E K ++R R
Sbjct: 75 SALKEIEKAILASDLGISPANDGSAIRLVIPQLTEERRKELAKDVKAEGERAKVAVRNVR 134
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
+ A++ +KK DQ+ +LE + +LT + K D I KEKEI EG
Sbjct: 135 RDAMEALKKGHKDGQFTDDQLHQLEDQAQKLTDQAGKDVDAIVADKEKEILEG 187
>gi|304316875|ref|YP_003852020.1| ribosome recycling factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|433655018|ref|YP_007298726.1| ribosome recycling factor [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|302778377|gb|ADL68936.1| ribosome recycling factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|433293207|gb|AGB19029.1| ribosome recycling factor [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 184
Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I L EL +R GRA+P +LD I ++ G P+N LA ++ + K + I P+D
Sbjct: 12 MKKSIAVLKNELMSIRAGRANPALLDRISIDYYGTMTPINKLATITAPEPKVIIIQPWDT 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI S L +NP DG+ + P LT+E + + K+V K E+ + ++R+ R
Sbjct: 72 SKISEIEKAIQKSDLNINPTSDGKIIRLVFPDLTEERRKELVKLVHKKGEEARVAVRQIR 131
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D++KK + +D+ + E+ + +LT KY+K D I + KEKEI E
Sbjct: 132 RDANDIIKKMDKNGEISEDEKLKSEESVQKLTDKYIKEIDKILEQKEKEIME 183
>gi|255263510|ref|ZP_05342852.1| ribosome recycling factor [Thalassiobium sp. R2A62]
gi|255105845|gb|EET48519.1| ribosome recycling factor [Thalassiobium sp. R2A62]
Length = 187
Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 99/169 (58%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ L E LRTGRAS ML+ ++V+ G P+N + V+V + + ++IN +D
Sbjct: 16 MDGAMANLRTEFASLRTGRASGSMLEPVMVDAYGTMTPINQVGTVNVPEPRMVTINVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI S LG+NP+++G ++ IP L +E + + KV A +E+ + S+R R
Sbjct: 76 GLVNKVEKAIRESGLGINPQMNGTIIMLPIPELNEERRRELTKVAASYAENARVSVRNVR 135
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + +KK + +P+D K E E+ ELT ++K D + K++EI
Sbjct: 136 RDGMVQIKKGKAAGMPEDDQKLWETEVQELTDSFIKQVDGALETKQEEI 184
>gi|227524388|ref|ZP_03954437.1| ribosome recycling factor [Lactobacillus hilgardii ATCC 8290]
gi|227088619|gb|EEI23931.1| ribosome recycling factor [Lactobacillus hilgardii ATCC 8290]
Length = 187
Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A L EL +R GRA+ +L + V+ G PLN +A +S+ +++ + I PYD
Sbjct: 15 MKKAQEVLEHELGSIRAGRANASLLSGVTVDYYGAPTPLNQIASISIPEARVILITPYDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L +E I + LGL+P DG + AIPALT+E + + K V T E K ++R R
Sbjct: 75 SSLDNIEKGIYEADLGLSPANDGTAIRLAIPALTEERRREVAKQVKATGEKSKVAVRNVR 134
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
++A+D K+ S + D++ RLE ++ +LT +KS D I KE E+ G
Sbjct: 135 REAMDTFKRGNKSEEITDDELHRLEDQVQKLTDNSIKSVDKIVADKENEVMNG 187
>gi|374596432|ref|ZP_09669436.1| ribosome recycling factor [Gillisia limnaea DSM 15749]
gi|373871071|gb|EHQ03069.1| ribosome recycling factor [Gillisia limnaea DSM 15749]
Length = 184
Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 99/168 (58%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L ++L +R G+ASP ML ++V+ G PLN +A V+ D++T+SI P++
Sbjct: 16 MQNAIRHLEKQLLNIRAGKASPAMLGSVMVDYYGSMTPLNQVANVNTPDARTISIQPFER 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
T+ +E I+ + LG NP +G+ +I ++P LT+E + + K +E+ K IR R
Sbjct: 76 GTIPNIEKGILVANLGFNPMNNGESVIISVPPLTEERRKDLAKQAKAEAEEAKIGIRNDR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A + +KK + +D K E+ I ELT KYV+ D I KEKEI
Sbjct: 136 KSANNEIKKL--EISEDLAKIGEETIQELTDKYVRKVDSIFDNKEKEI 181
>gi|33152634|ref|NP_873987.1| ribosome recycling factor [Haemophilus ducreyi 35000HP]
gi|38372405|sp|Q7VL83.1|RRF_HAEDU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|33148858|gb|AAP96376.1| ribosome recycling factor [Haemophilus ducreyi 35000HP]
Length = 185
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ AL ++K+RTGRA P +LD I VE G PL +A V D++TL++N +D
Sbjct: 13 MEKSLEALKSHISKIRTGRAQPSLLDGIQVEYYGSATPLRQVANVVAEDARTLAVNVFDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI++S LGLNP G + +PALT+E + + K+V E K +IR R
Sbjct: 73 SLISAVEKAILTSDLGLNPSSAGATIRVPLPALTEERRRDLIKIVKNEGEQGKIAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K + +D+ ++ + EI ++T YVK D++ AKEKE+
Sbjct: 133 RDANDQIKALLKDKEISEDEERKAQDEIQKITDGYVKKVDEVLMAKEKEL 182
>gi|423066834|ref|ZP_17055624.1| ribosome recycling factor [Arthrospira platensis C1]
gi|406711599|gb|EKD06799.1| ribosome recycling factor [Arthrospira platensis C1]
Length = 193
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ + R +RTGRA+ +LD I VE G PL LA +S D+ T++I P+D
Sbjct: 21 MKKALESTGRSFNTIRTGRANASLLDRITVEYYGSPTPLKSLASISTPDASTITIQPFDR 80
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N+L +E AI S +GL P DG + IP LT+ Q K+ K +E+ + S+R R
Sbjct: 81 NSLNNIEKAISMSDVGLTPNNDGSVVRLNIPPLTEARRQEFVKLAGKYAEEGRVSVRNIR 140
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K + +D+ + ++ +I +LT KY D++ +AKEK+I
Sbjct: 141 RDAIDSVRKQEKNGDISEDESRDIQDKIQKLTDKYTAKVDELLEAKEKDI 190
>gi|381401859|ref|ZP_09926750.1| ribosome recycling factor [Kingella kingae PYKK081]
gi|380833156|gb|EIC13033.1| ribosome recycling factor [Kingella kingae PYKK081]
Length = 185
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ L L+K+RTGRA G+LD + VE G ++P++ +A V++LD++T+ + P++
Sbjct: 13 MQRSLEVLGDNLSKVRTGRAHTGLLDQVSVEYWGSEVPVSQVANVTLLDARTIGVKPFES 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N ++E AI S LGLNP G + +P LT+E + + KVV +ED + SIR R
Sbjct: 73 NMASKIEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRGEAEDGRVSIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK + +D+ +R E+ + +LT KY+ D + AKE+++
Sbjct: 133 RDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYIADVDKMLAAKEEDL 182
>gi|407000738|gb|EKE17942.1| hypothetical protein ACD_10C00203G0005 [uncultured bacterium]
Length = 185
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ +L +L K+RTGRA G+LDHI V+ G +P+N +A ++++D++T+ + P++
Sbjct: 13 MQKSLESLKNDLQKIRTGRAHTGLLDHIQVDYYGSMVPINQIANITLVDARTIGVQPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N ++E AI S LGLNP G + +PALT+E + + KVV E K +IR R
Sbjct: 73 NMASKVEKAIRDSDLGLNPASQGDLIRVPMPALTEERRRDLIKVVRNEGESAKVAIRNLR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A +K A +P+D ++ + +I +LT +YV D + KE E+
Sbjct: 133 RDANTQLKDALKKHEIPEDDERKTQDDIQKLTDRYVAEVDKMLALKEAEL 182
>gi|85859433|ref|YP_461635.1| ribosome recycling factor [Syntrophus aciditrophicus SB]
gi|123516615|sp|Q2LTQ4.1|RRF_SYNAS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|85722524|gb|ABC77467.1| ribosome recycling factor [Syntrophus aciditrophicus SB]
Length = 185
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME + AL + K+RTGRAS +LD I + G PLN +A +SV +S+ + I+P+D
Sbjct: 13 MEKGLQALEKSFNKVRTGRASISLLDGIKADYYGTPTPLNQVATLSVPESRQILISPWDT 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI S LGL P DG+ + +IP LT+ + + KVV K +E+ K +R +R
Sbjct: 73 SALNAIEKAIQKSDLGLVPNNDGKVIRISIPPLTEARRKELVKVVRKMAEECKVKLRNAR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + K K + + +DQM + ++ ++T Y++ ++DI KEKEI E
Sbjct: 133 RDANEEFKSMKKNNDISEDQMHDYQDQVQKMTDSYIEKSEDILVQKEKEIME 184
>gi|13358076|ref|NP_078350.1| ribosome releasing factor [Ureaplasma parvum serovar 3 str. ATCC
700970]
gi|170762287|ref|YP_001752597.1| ribosome recycling factor [Ureaplasma parvum serovar 3 str. ATCC
27815]
gi|183508475|ref|ZP_02689468.2| ribosome recycling factor [Ureaplasma parvum serovar 14 str. ATCC
33697]
gi|186701607|ref|ZP_02553656.2| ribosome recycling factor [Ureaplasma parvum serovar 6 str. ATCC
27818]
gi|22001956|sp|Q9PPX7.1|RRF_UREPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|189044082|sp|B1AJF3.1|RRF_UREP2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|11277798|pir||F82882 ribosome releasing factor frr UU512 [similarity] - Ureaplasma
urealyticum
gi|6899513|gb|AAF30925.1|AE002149_10 ribosome releasing factor [Ureaplasma parvum serovar 3 str. ATCC
700970]
gi|168827864|gb|ACA33126.1| ribosome recycling factor [Ureaplasma parvum serovar 3 str. ATCC
27815]
gi|182675892|gb|EDT87797.1| ribosome recycling factor [Ureaplasma parvum serovar 14 str. ATCC
33697]
gi|186700837|gb|EDU19119.1| ribosome recycling factor [Ureaplasma parvum serovar 6 str. ATCC
27818]
Length = 183
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 99/168 (58%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
E + + E KLRTGRA+P +LD I+V G MP+N LA +SV + + L+I PYD
Sbjct: 14 FELVLKWMHNEFIKLRTGRATPAILDGILVNYYGSMMPINQLANISVPEPRVLAIKPYDR 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++K++ AI +S LG+NP+VD + A T+E + + K + E+ K +R R
Sbjct: 74 SSIKDIATAINASNLGVNPQVDVDIIRLTFAAPTEEVRKNLVKKAKQVGEEAKIRVRHIR 133
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q+A D+ KK +++ D+ K + E+D LTK+ K + + KEK+I
Sbjct: 134 QEAQDLFKKDSTTIEDDK-KFFQTELDNLTKELNKEIETVVSHKEKDI 180
>gi|289434595|ref|YP_003464467.1| hypothetical protein lse_1230 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|422421972|ref|ZP_16498925.1| ribosome recycling factor [Listeria seeligeri FSL S4-171]
gi|289170839|emb|CBH27381.1| frr [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313638109|gb|EFS03374.1| ribosome recycling factor [Listeria seeligeri FSL S4-171]
Length = 185
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A AL+R+L +R GRA+ +LD + V+ G P+N +A +S+ +++ L I PYD
Sbjct: 13 MEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISIPEARMLLITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+E AI+ S LGL P DG L +IP LT+E + + K V K +E+ K ++R R
Sbjct: 73 TILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A + +KK + +D ++ +++ +LT + +K+ D+I K KE EI E
Sbjct: 133 REANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDNITKDKEAEILE 184
>gi|383483005|ref|YP_005391919.1| ribosome recycling factor [Rickettsia montanensis str. OSU 85-930]
gi|378935359|gb|AFC73860.1| ribosome recycling factor [Rickettsia montanensis str. OSU 85-930]
Length = 186
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L EL LRTGRAS +LD + VE G KMPL+ +A +S D++T+++ +D
Sbjct: 14 MEKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E I + LGL P DGQ + IPALT+E + + K+ K ED K S+R R
Sbjct: 74 SMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRKELVKLAHKYGEDTKISLRNIR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + +KK + + KD+ L +++ +LT Y D + K KE+EI
Sbjct: 134 RDGNEELKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEI 183
>gi|289578399|ref|YP_003477026.1| ribosome recycling factor [Thermoanaerobacter italicus Ab9]
gi|297544675|ref|YP_003676977.1| ribosome recycling factor [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|289528112|gb|ADD02464.1| ribosome recycling factor [Thermoanaerobacter italicus Ab9]
gi|296842450|gb|ADH60966.1| ribosome recycling factor [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 184
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ L EL +R GRA+P +LD I+V+ G PLN LA ++ +++ L + P+D
Sbjct: 12 MQKSLSVLKSELAAIRAGRANPALLDRIMVDYYGTPTPLNRLATITAPEARVLVVQPWDV 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI S LG+NP DG+ L P LT+E + + K+V K +E+ K ++R+ R
Sbjct: 72 SKISDIEKAIQKSDLGINPVSDGKVLRLVFPELTEERRKELVKLVYKKAEEAKVAVRQIR 131
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+ K+ E+EI +LT KY+K D I + KEKEI E
Sbjct: 132 RDANDTVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKIAETKEKEIME 183
>gi|91977324|ref|YP_569983.1| ribosome recycling factor [Rhodopseudomonas palustris BisB5]
gi|123721792|sp|Q136A7.1|RRF_RHOPS RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|91683780|gb|ABE40082.1| ribosome recycling factor [Rhodopseudomonas palustris BisB5]
Length = 187
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A AL EL LRTGRAS ML+ + V+ G MPLN +A VSV + + LS+ +D
Sbjct: 15 MHGASQALQHELGGLRTGRASASMLEPVQVDAYGTHMPLNQVATVSVPEPRLLSVQVWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AIV S LGL+P +GQ L IP L ++ + + KV K +E + ++R R
Sbjct: 75 SMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNQDRRKELVKVAHKYAEAARVAVRHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD++KK + +D KRL+ E+ + T + D + KEKEI
Sbjct: 135 RDGLDIIKKLEKAHEISEDDQKRLDHEVQKATDATISEIDQLLANKEKEI 184
>gi|354554151|ref|ZP_08973456.1| Ribosome-recycling factor [Cyanothece sp. ATCC 51472]
gi|353553830|gb|EHC23221.1| Ribosome-recycling factor [Cyanothece sp. ATCC 51472]
Length = 181
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ A R +RTGRA+ +LD + VE G + PL LA +S D+ T+ I PYD
Sbjct: 9 MQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTIMIQPYDK 68
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI S +GL P DGQ + IP LT+E + + K+ +K +E+ K +IR R
Sbjct: 69 GSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERRKDLVKLASKMAEEGKVAIRNIR 128
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K S + +D+ + L+ +I ++T ++ D++ AKEK+I
Sbjct: 129 RDAIDDVRKQEKNSDISEDESRGLQDDIQKVTDQFTDKIDELLAAKEKDI 178
>gi|118472629|ref|YP_886878.1| ribosome recycling factor [Mycobacterium smegmatis str. MC2 155]
gi|399986895|ref|YP_006567244.1| ribosome-recycling factor [Mycobacterium smegmatis str. MC2 155]
gi|441207141|ref|ZP_20973381.1| ribosome recycling factor [Mycobacterium smegmatis MKD8]
gi|166230801|sp|A0QVE0.1|RRF_MYCS2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|118173916|gb|ABK74812.1| ribosome recycling factor [Mycobacterium smegmatis str. MC2 155]
gi|399231456|gb|AFP38949.1| Ribosome-recycling factor [Mycobacterium smegmatis str. MC2 155]
gi|440628038|gb|ELQ89840.1| ribosome recycling factor [Mycobacterium smegmatis MKD8]
Length = 185
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 100/171 (58%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ EL +RTGRA+PGM + I ++ G P+ LA ++V +++ + I PY+
Sbjct: 13 MEKAVSVARDELGSIRTGRANPGMFNRINIDYYGSMTPITQLASINVPEARLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI +S LG+NP DG + AIP LT+E + + K ED K S+R R
Sbjct: 73 SQLRAIEDAIRNSDLGVNPSNDGNIIRVAIPQLTEERRRELVKQAKSKGEDAKVSVRNIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+KA L +KK G + +D++ R EK++D+ T Y D++ K KE E+
Sbjct: 133 RKAMEELSRIKKDGEA-GEDEVSRAEKDLDKSTHTYTAQIDELVKHKESEL 182
>gi|296085196|emb|CBI28691.3| unnamed protein product [Vitis vinifera]
Length = 274
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME I + +RTGRA+P +LD + VE G + L +A +S DS +L + PYD
Sbjct: 102 MEKTIETVRTNFNSIRTGRANPAILDRVEVEYYGTPVSLKSIAQISTPDSASLLVQPYDK 161
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK +E AIVSS LGL P DG+ + ++P LT E + + KVVAK +E+ K ++R R
Sbjct: 162 SSLKVIEKAIVSSDLGLTPNNDGEVIRLSLPQLTSERRKELSKVVAKQTEEGKVALRNIR 221
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ AL +K L +D +K L ++ +L +Y+K + I K KEKE+
Sbjct: 222 RDALKAYEKLEKDKKLSEDNVKDLSSDLQKLIDEYMKKIETIYKQKEKEL 271
>gi|157964221|ref|YP_001499045.1| ribosome recycling factor [Rickettsia massiliae MTU5]
gi|157843997|gb|ABV84498.1| Ribosome recycling factor [Rickettsia massiliae MTU5]
Length = 188
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L EL LRTGRAS +LD + VE G KMPL+ +A +S D++T+++ +D
Sbjct: 16 MEKALKVLDHELKGLRTGRASINLLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E I + LGL P DGQ + IP LT+E Q + K+ K ED K S+R R
Sbjct: 76 SMVSSVEKGITIANLGLTPATDGQLIRLPIPTLTEERRQELVKLAHKYGEDTKISLRNIR 135
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + +KK + + KD+ L +++ +LT Y D + K KE+EI
Sbjct: 136 RDGNEELKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEI 185
>gi|395493143|ref|ZP_10424722.1| ribosome recycling factor [Sphingomonas sp. PAMC 26617]
Length = 185
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I +L +L+ LRTGRAS +LD + VE G +MPLN +A VSV + + +S+ +D
Sbjct: 13 MAGSIESLKGDLSGLRTGRASTSLLDPVTVEVYGAQMPLNQVATVSVPEPRMISVQVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + AI S+ LGLNP VDG L IP LT+E + + K+ K +ED + + R R
Sbjct: 73 MNVGPCDKAIRSAGLGLNPIVDGTTLRLPIPDLTEERRKELAKLAGKYAEDARIAARNVR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +K + +D+ K+LE E+ +LT K + D AKEKEI
Sbjct: 133 RDGMDSLKTDEKKGVYSEDERKKLETEVQKLTDKTIGEIDAAATAKEKEI 182
>gi|410584555|ref|ZP_11321657.1| ribosome recycling factor [Thermaerobacter subterraneus DSM 13965]
gi|410504141|gb|EKP93653.1| ribosome recycling factor [Thermaerobacter subterraneus DSM 13965]
Length = 184
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 101/171 (59%), Gaps = 1/171 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEA + REL +R GRA+P +L+ I V+ G MP++ LA ++ + + L + P+D
Sbjct: 13 MEARVENFRRELAGVRAGRATPALLEKIRVDYYGTPMPIHQLATITAPEPRMLVVQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ E+E AI S LG+NP DGQ + +P LT+E + K V K +E+ + ++R R
Sbjct: 73 GVMGEIERAIAKSDLGVNPSSDGQVIRIVLPPLTEETRNELVKRVRKMAEEERVAVRNLR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A + +K +D+++R ++++ ELT + + D++ AKEKEI E
Sbjct: 133 RQANEDLKDLEDEGFSEDEIRRAQEKVQELTDRIIARIDELLAAKEKEIRE 183
>gi|365882190|ref|ZP_09421454.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Bradyrhizobium sp. ORS 375]
gi|367473751|ref|ZP_09473298.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Bradyrhizobium sp. ORS 285]
gi|365273965|emb|CCD85766.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Bradyrhizobium sp. ORS 285]
gi|365289528|emb|CCD93985.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Bradyrhizobium sp. ORS 375]
Length = 187
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 96/170 (56%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL EL LRTGRAS M++ + VE G MPLN LA VSV + + LS+ +D
Sbjct: 15 MQGATQALKHELGGLRTGRASASMVEPVQVEAYGSHMPLNQLATVSVPEPRLLSVQVWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AIV S LGL+P +GQ + IP L +E + + KV K +E + ++R R
Sbjct: 75 SMVKAVEKAIVDSNLGLSPATEGQVIRLRIPELNQERRKELVKVAHKYAEQARVAVRHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD +KK + +D +R ++ + T + D + AKEKEI
Sbjct: 135 RDGLDTLKKLEKNHEMSEDDQERFAGDVQKATDSVISEIDQLLAAKEKEI 184
>gi|116792732|gb|ABK26473.1| unknown [Picea sitchensis]
Length = 279
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME + + +RTGRASP LD + VE G + L LA VSV D TL + PYD
Sbjct: 107 MEKTLETIKTNFNSIRTGRASPAFLDRVEVEYYGSPVNLKSLAQVSVPDGGTLLVQPYDK 166
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK +E AI S LGL P DG + +IP LT E + + KVVAK +E+ K +IR R
Sbjct: 167 SSLKSIEKAISKSNLGLTPSNDGNVIRLSIPQLTSERRKELLKVVAKIAEEGKIAIRNIR 226
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+ +K L +D +K L ++ ++T +++K D + K KEKE+
Sbjct: 227 RDAIKAYEKLEKEKKLSEDNVKDLSGDLQKVTDEFIKKVDSLYKQKEKEL 276
>gi|152999980|ref|YP_001365661.1| ribosome recycling factor [Shewanella baltica OS185]
gi|160874601|ref|YP_001553917.1| ribosome recycling factor [Shewanella baltica OS195]
gi|378707853|ref|YP_005272747.1| ribosome recycling factor [Shewanella baltica OS678]
gi|166231225|sp|A6WLA9.1|RRF_SHEB8 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|189044074|sp|A9KUK8.1|RRF_SHEB9 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|151364598|gb|ABS07598.1| ribosome recycling factor [Shewanella baltica OS185]
gi|160860123|gb|ABX48657.1| ribosome recycling factor [Shewanella baltica OS195]
gi|315266842|gb|ADT93695.1| ribosome recycling factor [Shewanella baltica OS678]
Length = 185
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
A ++ K+RTGRA P +LD I V G PLN +A V V DS+TLS+ +D + ++ +
Sbjct: 19 ATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAV 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI+SS LGLNP G L +PALT+E + KVV +E+ + +IR R+ A+
Sbjct: 79 EKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNEAENGRIAIRNVRRDAISE 138
Query: 127 MKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KK + +D ++R E+E+ + T ++K D+I AKE E+ E
Sbjct: 139 VKKLEKAKACTEDDVRRSEEEVQKFTDAHIKKVDEILAAKEIELME 184
>gi|392415830|ref|YP_006452435.1| ribosome recycling factor [Mycobacterium chubuense NBB4]
gi|390615606|gb|AFM16756.1| ribosome recycling factor [Mycobacterium chubuense NBB4]
Length = 185
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 101/171 (59%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +RTGRA+PGM + I V+ G P+ L+ ++V +++ + I PY+
Sbjct: 13 MEKAVSVARDDLASIRTGRANPGMFNRIHVDYYGSATPITQLSSINVPEARLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI +S LG+NP DG + AIP LT+E + + K ED K S+R R
Sbjct: 73 GQLRNIEDAIRNSDLGVNPTNDGNVIRVAIPQLTEERRRDLVKQAKGKGEDAKVSVRNIR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+KA++ + KK G + +D + R EK++D+ T++Y D++ K KE E+
Sbjct: 133 RKAMEELTRIKKDGDA-GEDDVTRAEKDLDKTTQQYTNQIDELVKHKEGEL 182
>gi|327404464|ref|YP_004345302.1| ribosome recycling factor [Fluviicola taffensis DSM 16823]
gi|327319972|gb|AEA44464.1| ribosome recycling factor [Fluviicola taffensis DSM 16823]
Length = 187
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 99/166 (59%), Gaps = 1/166 (0%)
Query: 4 AIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTL 63
+I L EL K+R G+A+P ML ++V+ G P++ + V+ +D++TL++ ++ N L
Sbjct: 19 SIDHLENELVKVRAGKATPSMLSGVLVDYYGSPTPIHQVGNVNSMDARTLTVQAFEKNML 78
Query: 64 KELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKA 123
E+ I+++ LGLNP+ +G++LI IP LT+E + + K +E K IR +R+ A
Sbjct: 79 NEIAKGIMNANLGLNPQNNGEQLIIQIPLLTEERRRDLVKKARAEAEHAKVGIRNNRKDA 138
Query: 124 LDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+DM+K L +D K E EI LT ++K D++ KEK+I
Sbjct: 139 IDMVKSLKADGLSEDMTKDAETEIQNLTNGFIKKIDELVDLKEKDI 184
>gi|390934914|ref|YP_006392419.1| Ribosome-recycling factor [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570415|gb|AFK86820.1| Ribosome-recycling factor [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 184
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I L EL +R GRA+P +LD I ++ G P+N LA ++ + K + I P+D
Sbjct: 12 MKKSIAVLKNELMSIRAGRANPALLDRISIDYYGTMTPINKLATITAPEPKVIIIQPWDT 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI S L +NP DG+ + P LT+E + + K+V K E+ K ++R+ R
Sbjct: 72 SKISEIEKAIQKSDLNINPTSDGKIIRLVFPDLTEERRKELVKLVHKKGEEAKVAVRQIR 131
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+ + E+ + +LT KY+K D I + KEKEI E
Sbjct: 132 RDANDAIKKMDKNGEISEDEKLKSEENVQKLTDKYIKEIDKILEQKEKEIME 183
>gi|365826450|ref|ZP_09368366.1| ribosome-recycling factor [Actinomyces sp. oral taxon 849 str.
F0330]
gi|365266067|gb|EHM95788.1| ribosome-recycling factor [Actinomyces sp. oral taxon 849 str.
F0330]
Length = 185
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A EL +RTGRA+P M + I+V+ G PL LA +++ +++T+ ++P+D
Sbjct: 13 MDKALQAAKSELASIRTGRANPSMFNGIVVDYYGAPTPLQQLASLTIPEARTVLVSPFDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++ AI S LG+NP DG + +PALT+E + K+ +ED + +R R
Sbjct: 73 SAMKDIVTAIRESDLGVNPTDDGTVIRVTLPALTEERRKDYVKLARSRAEDSRVQVRGIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KA L+ +KK G + +D +KR E E+D LTK++V+ D AKE E+ E
Sbjct: 133 GKAKKELEAIKKDGEA-GEDDVKRAEHELDGLTKRFVEQIDAALSAKEGELLE 184
>gi|406997238|gb|EKE15362.1| hypothetical protein ACD_12C00047G0001, partial [uncultured
bacterium]
Length = 174
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 4 AIVALSRELTKLRTGRASPGMLDHIIVET--GGVKMPLNHLAVVSVLDSKTLSINPYDPN 61
I +L +L +RTGRASP +++++IVET G K+ L LA + + ++SI+PYDP+
Sbjct: 3 TIASLKEDLKSIRTGRASPNLVENLIVETYGGQTKLRLLELATIMTEGASSISISPYDPS 62
Query: 62 TLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQ 121
++++E AI+ SPLGL P G +++ IP+L E + KVV + E+ K IR R
Sbjct: 63 VIQDIEKAILKSPLGLTPTTLGAKIVIRIPSLNTEQREKYIKVVGEKVEEKKVIIRNHRD 122
Query: 122 KALDMMKKAGS--SLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ +K A + +D+ RLEKEID + K+++ + I ++KE+EI E
Sbjct: 123 DSRRTIKNAFEKKEMSEDEKYRLEKEIDAQSTKFMEEVNVIKESKEREIME 173
>gi|332637898|ref|ZP_08416761.1| ribosome recycling factor [Weissella cibaria KACC 11862]
Length = 185
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 97/163 (59%), Gaps = 2/163 (1%)
Query: 8 LSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELE 67
L REL +R G A+P +L ++ E G PLN LA ++V +++ L I P+D + LK++E
Sbjct: 20 LRRELGNIRAGVANPSILRNVTAEYYGAPTPLNQLASITVPEARVLLITPFDKSILKDIE 79
Query: 68 CAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMM 127
AI +S LGL P DG + IPALT+E +++ K V SE K ++R R+ A+D
Sbjct: 80 QAIFASDLGLTPANDGSVIRLVIPALTEETRKSLAKEVKGESEKAKVAVRNVRRDAMDDA 139
Query: 128 KKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KKA + +D+ ++LE +I + T VK+ D I KEKE+
Sbjct: 140 KKALKNGDMSEDEARKLEDDIQKATDAAVKNIDGIAAEKEKEL 182
>gi|227833383|ref|YP_002835090.1| ribosome recycling factor [Corynebacterium aurimucosum ATCC 700975]
gi|262184370|ref|ZP_06043791.1| ribosome recycling factor [Corynebacterium aurimucosum ATCC 700975]
gi|254809506|sp|C3PH48.1|RRF_CORA7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|227454399|gb|ACP33152.1| Ribosome recycling factor [Corynebacterium aurimucosum ATCC 700975]
Length = 185
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A++ +L +RTGRA+P M + ++ E GV P+ +A +SV + + L I PY+
Sbjct: 13 MTASVEHTREQLLTIRTGRANPAMFNGLVAEYYGVPTPITQMATISVPEPRMLLIKPYEQ 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI +S LG+NP DGQ L IP LT+E + M K+ ED K +IR R
Sbjct: 73 SVMNEIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKMAKSKGEDGKIAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A++ +KK +D++ EKE++++T Y++ D + KE+E+ E
Sbjct: 133 RRAMEQLKKLQKDGDAGEDEVIAAEKEMEKITSGYIEQVDKLVANKEEELME 184
>gi|148255867|ref|YP_001240452.1| ribosome recycling factor [Bradyrhizobium sp. BTAi1]
gi|190360235|sp|A5EK52.1|RRF_BRASB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|146408040|gb|ABQ36546.1| ribosome recycling factor [Bradyrhizobium sp. BTAi1]
Length = 187
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 96/170 (56%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL EL LRTGRAS M++ + VE G MPLN LA VSV + + LS+ +D
Sbjct: 15 MQGATQALKHELGGLRTGRASASMVEPVQVEAYGSHMPLNQLATVSVPEPRLLSVQVWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+K +E AIV S LGL+P +GQ + IP L +E + + KV K +E + ++R R
Sbjct: 75 TMVKAVEKAIVDSNLGLSPATEGQVIRLRIPELNQERRKELVKVAHKYAEAARVAVRHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD +KK + +D +RL +I + T + D + AKEKEI
Sbjct: 135 RDGLDTVKKLEKNHEISEDDQERLATDIQKATDSVISEIDQLLAAKEKEI 184
>gi|378824167|ref|ZP_09846702.1| ribosome recycling factor [Sutterella parvirubra YIT 11816]
gi|378596997|gb|EHY30350.1| ribosome recycling factor [Sutterella parvirubra YIT 11816]
Length = 217
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 98/171 (57%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M + L + TK+RTGRAS G+LDHI V+ G P+N +A + V D+ TL++ P++
Sbjct: 45 MGRTVETLREDFTKIRTGRASTGLLDHIKVDYYGCPTPINQVAQIGVGDAHTLTVQPWEK 104
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AI S LGLNP G + +P LT+E + + KVV ED K ++R R
Sbjct: 105 SMIKVVEKAIRDSDLGLNPATSGDLIRVPLPPLTEERRRELTKVVRGFGEDAKVAVRNLR 164
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A +D + K + +D +R E EI ++T +++ D + KEKEI
Sbjct: 165 RDANTHIDRLLK-DKEISEDDQRRAETEIQKITDRFIGEIDKVVGDKEKEI 214
>gi|422412781|ref|ZP_16489740.1| ribosome recycling factor, partial [Listeria innocua FSL S4-378]
gi|313619142|gb|EFR90928.1| ribosome recycling factor [Listeria innocua FSL S4-378]
Length = 176
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A AL+R+L +R GRA+ +LD + V+ G P+N +A +SV +++ L I PYD
Sbjct: 4 MEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISVPEARMLLITPYDK 63
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+E AI+ S LGL P DG L +IP LT+E + + K V K +E+ K ++R R
Sbjct: 64 TILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIR 123
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A + +KK + +D ++ +++ +LT + +K+ D I K KE EI E
Sbjct: 124 REANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILE 175
>gi|315918326|ref|ZP_07914566.1| ribosome recycling factor [Fusobacterium gonidiaformans ATCC 25563]
gi|313692201|gb|EFS29036.1| ribosome recycling factor [Fusobacterium gonidiaformans ATCC 25563]
Length = 189
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 4/172 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I A + T +R GRAS MLD+I VE G MPLN +A VS +++ L I+P+D
Sbjct: 15 MQKTIEATKEKFTSIRAGRASVAMLDNIKVEQYGSDMPLNQVATVSAPEARLLVIDPWDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI+++ LG+NP DG+ + +P LT + + K+ K +E+ K ++R R
Sbjct: 75 TMILKIEKAILAANLGMNPNNDGRVVRLVMPELTADRRKEYVKLAKKEAENGKIAVRNIR 134
Query: 121 QKALDMMKK----AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +KK S + +D++KR E E+ LT K +K DD+ KEKEI
Sbjct: 135 KDMNTALKKIEKDKESGMSEDELKRFEAEVQTLTDKTIKDLDDLLAKKEKEI 186
>gi|86138423|ref|ZP_01056997.1| ribosome recycling factor [Roseobacter sp. MED193]
gi|85824948|gb|EAQ45149.1| ribosome recycling factor [Roseobacter sp. MED193]
Length = 187
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 99/169 (58%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ L E LRTGRAS ML+ ++VE G P+N + V+V + + ++IN +D
Sbjct: 16 MDGAMANLKTEFASLRTGRASGAMLEPVMVEAYGSMTPINQVGTVNVPEPRMVTINVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI +S LG+NP+++G ++ IP L +E + + KV + +E + SIR R
Sbjct: 76 GLVGPVEKAIRNSGLGINPQLNGTIIMLPIPELNEERRRELGKVAGQYAEHCRVSIRNVR 135
Query: 121 QKALDMMKKAGS-SLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA S + +D K E E+ +LT +KS DD + K+ EI
Sbjct: 136 RDGMDQIKKAKSDGMSEDDQKFWESEVQDLTDAMIKSVDDALEHKQAEI 184
>gi|223933844|ref|ZP_03625811.1| ribosome recycling factor [Streptococcus suis 89/1591]
gi|386583740|ref|YP_006080143.1| ribosome recycling factor [Streptococcus suis D9]
gi|223897495|gb|EEF63889.1| ribosome recycling factor [Streptococcus suis 89/1591]
gi|353735886|gb|AER16895.1| ribosome recycling factor [Streptococcus suis D9]
Length = 185
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE + +R GRA+ +LD I VE G PLN LA ++V +++ L I P+D + LK++
Sbjct: 19 SLAREFSHIRAGRANASLLDRISVEYYGSPTPLNQLAGITVPEARVLLITPFDKSILKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALD- 125
E A+ +S LGL P+ DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGLTPQSDGTVIRLVIPALTEETRKNLAKDVKKVGENSKVAIRNIRRDAMDE 138
Query: 126 -MMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + +D++K LEK+I ++T +K+ D + KEKE+ E
Sbjct: 139 AKKAEKAKEITEDELKTLEKDIQKVTDDAIKTIDKMTADKEKELLE 184
>gi|365887439|ref|ZP_09426284.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Bradyrhizobium sp. STM 3809]
gi|365336975|emb|CCD98815.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Bradyrhizobium sp. STM 3809]
Length = 187
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 96/170 (56%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL EL LRTGRAS M++ + VE G MPLN LA VSV + + LS+ +D
Sbjct: 15 MQGATQALKHELGGLRTGRASASMVEPVQVEAYGSHMPLNQLATVSVPEPRLLSVQVWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AIV S LGL+P +GQ + IP L +E + + KV K +E + ++R R
Sbjct: 75 SMVKAVEKAIVDSNLGLSPATEGQVIRLRIPELNQERRKELVKVAHKYAEQARVAVRHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD +KK + +D +R ++ + T + D + AKEKEI
Sbjct: 135 RDGLDTLKKLEKNHEISEDDQERFAGDVQKATDSVISEIDQLLAAKEKEI 184
>gi|325067054|ref|ZP_08125727.1| ribosome recycling factor [Actinomyces oris K20]
gi|326771757|ref|ZP_08231042.1| ribosome recycling factor [Actinomyces viscosus C505]
gi|343523380|ref|ZP_08760341.1| ribosome recycling factor [Actinomyces sp. oral taxon 175 str.
F0384]
gi|326637890|gb|EGE38791.1| ribosome recycling factor [Actinomyces viscosus C505]
gi|343399597|gb|EGV12118.1| ribosome recycling factor [Actinomyces sp. oral taxon 175 str.
F0384]
Length = 185
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A EL +RTGRA+P M + I+V+ G PL LA +++ +++T+ ++P+D
Sbjct: 13 MDKALQAAKSELATIRTGRANPSMFNGIVVDYYGAPTPLQQLASLTIPEARTVLVSPFDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++ AI S LG+NP DG + +PALT+E + K+ +ED + +R R
Sbjct: 73 SAMKDIVTAIRESDLGVNPTDDGTVIRVTLPALTEERRKDYVKLARSRAEDSRVQVRGIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
KA L+ +KK G + +D +KR E E+D LTK++V+ D AKE E+ E
Sbjct: 133 GKAKKELEAIKKDGEA-GEDDVKRAEHELDGLTKRFVEQIDAALSAKEAELLE 184
>gi|172038505|ref|YP_001805006.1| ribosome recycling factor [Cyanothece sp. ATCC 51142]
gi|226749927|sp|B1X0Q1.1|RRF_CYAA5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|171699959|gb|ACB52940.1| ribosome recycling factor [Cyanothece sp. ATCC 51142]
Length = 182
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ A R +RTGRA+ +LD + VE G + PL LA +S D+ T+ I PYD
Sbjct: 10 MQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTIMIQPYDK 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI S +GL P DGQ + IP LT+E + + K+ +K +E+ K +IR R
Sbjct: 70 GSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERRKDLVKLASKMAEEGKVAIRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K S + +D+ + L+ +I ++T ++ D++ AKEK+I
Sbjct: 130 RDAIDDVRKQEKNSDISEDESRGLQDDIQKVTDQFTDKIDELLAAKEKDI 179
>gi|357238187|ref|ZP_09125524.1| ribosome recycling factor [Streptococcus ictaluri 707-05]
gi|356752910|gb|EHI70031.1| ribosome recycling factor [Streptococcus ictaluri 707-05]
Length = 185
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 99/164 (60%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+LSRE +R GRA+ +LD I VE G PLN LA ++V +++ L I+P+D +++K++
Sbjct: 19 SLSREYASIRAGRANASLLDRIKVEYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K SIR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKISIRNIRRDAMDD 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KK + +D++K LEK+I + T +K D + KE E+
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKATDDAIKEIDKMTADKETEL 182
>gi|336437368|ref|ZP_08617074.1| ribosome-recycling factor [Lachnospiraceae bacterium 1_4_56FAA]
gi|336005494|gb|EGN35539.1| ribosome-recycling factor [Lachnospiraceae bacterium 1_4_56FAA]
Length = 183
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ +L EL +R GRA+P +LD I+V+ G P+ +A VSV +++ + I P++
Sbjct: 12 MTKSMHSLHSELAAIRAGRANPHVLDKILVDYYGTPTPIQQVANVSVPEARMIQIQPWEK 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ LK LE AI++S LG+NP DG + P LT+E + + K V K E K +IR R
Sbjct: 72 SMLKVLEKAIMTSELGINPTNDGSTIRLIFPELTEERRKELAKDVKKKGEAAKVAIRNIR 131
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D KK G + +D++K LE E+ ++T KYVK D K KE+
Sbjct: 132 RDGNDAFKKLKGGDISEDEIKDLEDELQKMTDKYVKEVDKAVDEKTKEV 180
>gi|220921531|ref|YP_002496832.1| ribosome recycling factor [Methylobacterium nodulans ORS 2060]
gi|254809520|sp|B8INK3.1|RRF_METNO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|219946137|gb|ACL56529.1| ribosome recycling factor [Methylobacterium nodulans ORS 2060]
Length = 187
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ AL +L LRTGRASP +LD I +E G MP+ +A +SV + + LS+ +D
Sbjct: 15 MQGAVNALKHDLGSLRTGRASPTLLDPIQIEAYGAVMPMAQVATISVPEPRLLSVAVWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI S LGLNP +GQ + IP ++++ + M KV K +E+ + ++R R
Sbjct: 75 GMVSAVEKAIRESDLGLNPMTEGQTIRLRIPEMSEQRRKEMVKVAHKYAEEARVAVRHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD++KK ++ +D KR ++ ++T +++ D AKEKEI
Sbjct: 135 RDGLDLLKKLEKDGAISQDDEKRQADQVQKITDQHIAEVDQTLAAKEKEI 184
>gi|146318980|ref|YP_001198692.1| ribosome recycling factor [Streptococcus suis 05ZYH33]
gi|146321189|ref|YP_001200900.1| ribosome recycling factor [Streptococcus suis 98HAH33]
gi|253752048|ref|YP_003025189.1| ribosome recycling factor [Streptococcus suis SC84]
gi|253753873|ref|YP_003027014.1| ribosome recycling factor [Streptococcus suis P1/7]
gi|253755251|ref|YP_003028391.1| ribosome recycling factor [Streptococcus suis BM407]
gi|302024058|ref|ZP_07249269.1| ribosome recycling factor [Streptococcus suis 05HAS68]
gi|330832480|ref|YP_004401305.1| ribosome recycling factor [Streptococcus suis ST3]
gi|386580224|ref|YP_006076629.1| ribosome recycling factor [Streptococcus suis JS14]
gi|386582246|ref|YP_006078650.1| ribosome recycling factor [Streptococcus suis SS12]
gi|386585794|ref|YP_006082196.1| ribosome recycling factor [Streptococcus suis D12]
gi|386588432|ref|YP_006084833.1| ribosome recycling factor [Streptococcus suis A7]
gi|389856298|ref|YP_006358541.1| ribosome recycling factor [Streptococcus suis ST1]
gi|403061804|ref|YP_006650020.1| ribosome recycling factor [Streptococcus suis S735]
gi|166231519|sp|A4W2B1.1|RRF_STRS2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166231521|sp|A4VW03.1|RRF_STRSY RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|145689786|gb|ABP90292.1| Ribosome recycling factor [Streptococcus suis 05ZYH33]
gi|145691995|gb|ABP92500.1| Ribosome recycling factor [Streptococcus suis 98HAH33]
gi|251816337|emb|CAZ51968.1| ribosome recycling factor [Streptococcus suis SC84]
gi|251817715|emb|CAZ55464.1| ribosome recycling factor [Streptococcus suis BM407]
gi|251820119|emb|CAR46427.1| ribosome recycling factor [Streptococcus suis P1/7]
gi|319758416|gb|ADV70358.1| ribosome recycling factor [Streptococcus suis JS14]
gi|329306703|gb|AEB81119.1| ribosome recycling factor [Streptococcus suis ST3]
gi|353734392|gb|AER15402.1| ribosome recycling factor [Streptococcus suis SS12]
gi|353737940|gb|AER18948.1| ribosome recycling factor [Streptococcus suis D12]
gi|353740016|gb|AER21023.1| ribosome recycling factor [Streptococcus suis ST1]
gi|354985593|gb|AER44491.1| ribosome recycling factor [Streptococcus suis A7]
gi|402809130|gb|AFR00622.1| ribosome recycling factor [Streptococcus suis S735]
Length = 185
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE + +R GRA+ +LD I VE G PLN LA ++V +++ L I P+D + LK++
Sbjct: 19 SLAREFSHIRAGRANASLLDRISVEYYGSPTPLNQLAGITVPEARVLLITPFDKSILKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALD- 125
E A+ +S LGL P+ DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGLTPQSDGTVIRLVIPALTEETRKNLAKDVKKVGENSKVAIRNIRRDAMDE 138
Query: 126 -MMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + +D++K LEK+I ++T +K+ D + KEKE+ E
Sbjct: 139 AKKAEKAKEITEDELKTLEKDIQKVTDDAIKTIDKMTADKEKELLE 184
>gi|448821533|ref|YP_007414695.1| Ribosome-recycling factor [Lactobacillus plantarum ZJ316]
gi|448275030|gb|AGE39549.1| Ribosome-recycling factor [Lactobacillus plantarum ZJ316]
Length = 187
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 99/173 (57%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL REL +R GRA+ +L+ I + G + PLN +A ++V + + L + P+D
Sbjct: 15 MKKAEAALKRELGNIRAGRANASLLNRISADYYGAQTPLNQMAAITVPEPRVLMVTPFDK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ LKE+E AI++S LG++P DG + IP LT+E + + K V E K ++R R
Sbjct: 75 SALKEIEKAILASDLGISPANDGSAIRLVIPQLTEERRKELAKDVKAEGERAKVAVRNVR 134
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
+ A++ +KK DQ+ +LE + +LT + K D I KEKEI EG
Sbjct: 135 RDAMEALKKGHKDGQFTDDQLHQLEDQAQKLTDQAGKDVDAIVADKEKEILEG 187
>gi|254449718|ref|ZP_05063155.1| ribosome recycling factor [Octadecabacter arcticus 238]
gi|198264124|gb|EDY88394.1| ribosome recycling factor [Octadecabacter arcticus 238]
Length = 187
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L E LRTGRAS +L+ I+V+ G + P+N + V+V +S+ +++N +D
Sbjct: 16 MDGAIANLRVEFASLRTGRASASILEPIMVDAYGSQTPINQVGTVNVPESRMVTVNVWDK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI S LG+NP+++G ++ IP L +E + KV +E+ + SIR R
Sbjct: 76 GLVSKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRTQLTKVAGTYAENGRVSIRNVR 135
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA + +D K E + E+T Y+K DD + K+ EI
Sbjct: 136 RDGMDQVKKAKNDGMSEDDQKFWEGAVQEMTNDYIKRVDDQLEIKQAEI 184
>gi|407983130|ref|ZP_11163790.1| ribosome recycling factor [Mycobacterium hassiacum DSM 44199]
gi|407375266|gb|EKF24222.1| ribosome recycling factor [Mycobacterium hassiacum DSM 44199]
Length = 185
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ EL+ +RTGRA+P M + V+ G P+ L+ ++V +++ + I PY+
Sbjct: 13 MEKAVSVARDELSAIRTGRANPAMFARVTVDYYGAPTPITQLSSINVPEARLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LK +E AI +S LG+NP DG + AIP LT+E + + K E+ K S+R R
Sbjct: 73 NQLKNIEDAIRNSDLGVNPTNDGTVIRVAIPQLTEERRRDLVKQAKAKGEEAKVSVRNIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA L+ +KK G + +D++ R EK++D++T Y D++ K KE E+ E
Sbjct: 133 RKAMEELNRIKKDGEA-GEDEVTRAEKDLDKITHTYTAQIDELVKHKEGELLE 184
>gi|423205633|ref|ZP_17192189.1| ribosome-recycling factor [Aeromonas veronii AMC34]
gi|404623908|gb|EKB20757.1| ribosome-recycling factor [Aeromonas veronii AMC34]
Length = 185
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ +L +++K+RTGRA P +LD I VE G PL LA V DS+TLSI+ +D
Sbjct: 13 MGKSVESLKTQMSKIRTGRAHPSLLDGIQVEYYGAATPLKQLANVVAEDSRTLSISVFDR 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++ +E AI++S LGLNP +GQ L +P LT+E + + KVV +E+ + ++R R
Sbjct: 73 SMIQAVEKAILTSDLGLNPSSNGQSLRVPLPPLTEERRRDLTKVVRGEAENARVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A +K + +D +R ++EI +LT Y+K D+ AKEKE+ E
Sbjct: 133 RDANADLKALLKEKEISEDDDRRAQEEIQKLTDSYIKLVDEALAAKEKELME 184
>gi|374850386|dbj|BAL53376.1| ribosome recycling factor [uncultured candidate division OP1
bacterium]
gi|374856796|dbj|BAL59649.1| ribosome recycling factor [uncultured candidate division OP1
bacterium]
Length = 185
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 101/171 (59%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + EL KLRTGRA+P M++ + V+ G PL HLA ++ + + I+P+D
Sbjct: 13 MDKTVQVFEHELVKLRTGRANPAMVEDVKVDYYGTHTPLKHLARIAAPEPDLIVIHPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
++ +E AI ++ LG NP VDG+ L IP LT+E + + KV+ +E+ K ++IR
Sbjct: 73 TQVQAIEKAIQAANLGFNPTVDGELLRIKIPRLTEERRKELSKVIHDKAEEAKIALRNIR 132
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
R ++ LD +K G L +D R+ KEI+++T +Y D +AKEK++
Sbjct: 133 REIKEQLDKEQKDG-KLSEDDHDRIMKEIEKVTHEYTAKIDQTAQAKEKQL 182
>gi|71730815|gb|EAO32887.1| Ribosome recycling factor [Xylella fastidiosa Ann-1]
Length = 190
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 6/172 (3%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I AL L +RTGRASP +LD I ++ G PLN +A +SV + ++L I +D
Sbjct: 18 MTKSIDALRNSLASVRTGRASPSLLDGIKIKAYGTDTPLNQVASISVSEGRSLVITVFDK 77
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N K++E AI +S LGL P V G + +P LT+E + + KVV ED K +IR R
Sbjct: 78 NMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHSEGEDTKVAIRNIR 137
Query: 121 ----QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q+ DM+K + +D+++ E++I +LT K +KS D + K+KE+E+
Sbjct: 138 RDANQQIKDMLK--SKEITEDEVRHGEEDIQKLTDKAIKSVDKVVKSKEQEL 187
>gi|453077995|ref|ZP_21980729.1| ribosome recycling factor [Rhodococcus triatomae BKS 15-14]
gi|452757630|gb|EME16032.1| ribosome recycling factor [Rhodococcus triatomae BKS 15-14]
Length = 185
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME + + +L +RTGRA+PGM + I +E G P++ +A ++V +++ + I PY+
Sbjct: 13 MEKTVASAKDDLGGIRTGRANPGMFNRIAIEYYGAMTPISQVASITVPEARLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L ++ AI +S LG+NP DG + ++P LT+E + + K ED K +IR R
Sbjct: 73 SQLGPIQNAIRNSDLGVNPTDDGTLIRVSVPQLTEERRRELVKQSKAKGEDAKVAIRNVR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA+D + +K G + +D++ R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAMDELNRIQKDGEA-GEDEVGRAEKELDKTTAKYVAHIDELVKHKEAELME 184
>gi|121638763|ref|YP_978987.1| ribosome recycling factor [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224991255|ref|YP_002645944.1| ribosome recycling factor [Mycobacterium bovis BCG str. Tokyo 172]
gi|378772619|ref|YP_005172352.1| ribosome recycling factor [Mycobacterium bovis BCG str. Mexico]
gi|449064959|ref|YP_007432042.1| ribosome recycling factor [Mycobacterium bovis BCG str. Korea
1168P]
gi|166230800|sp|A1KMM6.1|RRF_MYCBP RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809522|sp|C1AFZ7.1|RRF_MYCBT RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|121494411|emb|CAL72892.1| Ribosome recycling factor frr [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224774370|dbj|BAH27176.1| ribosome recycling factor [Mycobacterium bovis BCG str. Tokyo 172]
gi|341602801|emb|CCC65479.1| Ribosome recycling factor frr [Mycobacterium bovis BCG str. Moreau
RDJ]
gi|356594940|gb|AET20169.1| Ribosome recycling factor [Mycobacterium bovis BCG str. Mexico]
gi|449033467|gb|AGE68894.1| ribosome recycling factor [Mycobacterium bovis BCG str. Korea
1168P]
Length = 185
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L+ +RTGRA+PGM I ++ G + LA ++V +++ + I PY+
Sbjct: 13 MEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATLITQLASINVPEARLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L+ +E AI +S LG+NP DG + A+P LT+E + + K E+ K S+R R
Sbjct: 73 NQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ + +K G + +D++ R EK++D+ T +YV D++ K KE E+ E
Sbjct: 133 RKAMEELHRIRKEGEA-GEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELLE 184
>gi|320540035|ref|ZP_08039691.1| ribosome recycling factor [Serratia symbiotica str. Tucson]
gi|320029884|gb|EFW11907.1| ribosome recycling factor [Serratia symbiotica str. Tucson]
Length = 199
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ A +++K+RTGRASP +LD I+VE G PL LA+V+V DS+TL+IN +D
Sbjct: 27 MEKSVEAFKNQISKVRTGRASPSILDGIMVEYYGAATPLRQLAIVTVEDSRTLAINLFDR 86
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+SS LGLNP G + +P LT+E + + KVV +E + ++R R
Sbjct: 87 SLGSAVEKAIMSSDLGLNPNSAGSVIRVPLPPLTEERRRDLIKVVRAEAEQGRVAVRNVR 146
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K + +D +R + EI ++T Y+K D KEKE+
Sbjct: 147 RDANDKVKALLKDKEISEDADRRSQDEIQKMTDAYIKLLDAALADKEKEL 196
>gi|195978553|ref|YP_002123797.1| ribosome recycling factor [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|225868107|ref|YP_002744055.1| ribosome recycling factor [Streptococcus equi subsp. zooepidemicus]
gi|225870940|ref|YP_002746887.1| ribosome recycling factor [Streptococcus equi subsp. equi 4047]
gi|414564520|ref|YP_006043481.1| ribosome recycling factor [Streptococcus equi subsp. zooepidemicus
ATCC 35246]
gi|226749941|sp|B4U467.1|RRF_STREM RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809531|sp|C0MBT1.1|RRF_STRE4 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|259494555|sp|C0MCC9.1|RRF_STRS7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|195975258|gb|ACG62784.1| ribosome recycling factor Frr [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225700344|emb|CAW94656.1| ribosome recycling factor [Streptococcus equi subsp. equi 4047]
gi|225701383|emb|CAW98452.1| ribosome recycling factor [Streptococcus equi subsp. zooepidemicus]
gi|338847585|gb|AEJ25797.1| ribosome recycling factor [Streptococcus equi subsp. zooepidemicus
ATCC 35246]
Length = 185
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L+RE +R GRA+ +LD I V+ G PLN LA ++V +++ L I+P+D +++K++
Sbjct: 19 SLAREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E K SIR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGETAKVSIRNIRRDAMDE 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KK + +D++K LEK+I + T + VK D + KEKE+
Sbjct: 139 AKKQEKAKEITEDELKALEKDIQKATDEAVKEIDRMTADKEKEL 182
>gi|407474023|ref|YP_006788423.1| ribosome recycling factor Frr [Clostridium acidurici 9a]
gi|407050531|gb|AFS78576.1| ribosome recycling factor Frr [Clostridium acidurici 9a]
Length = 185
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I + + EL+ +R GRA+P +LD I VE G + PLN +A +S + + L I P+D
Sbjct: 13 MQKTINSCADELSGVRAGRANPTLLDRITVEYYGAQTPLNQIANISAPEPRMLVIQPWDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L E+E +I+ S LGLNP DG+ L IP LT+E + KVV K E+ K +IR R
Sbjct: 73 SILGEIEKSILKSDLGLNPTNDGKILRLMIPQLTEERRVELTKVVKKIGENSKIAIRNQR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + + +D+ K+ E ++ ++T D + AKEKE+ E
Sbjct: 133 RDANDAIKKMVKSNEITEDEGKQAEDQVQKITDNSTDEIDKLVIAKEKELME 184
>gi|333897130|ref|YP_004471004.1| ribosome-recycling factor [Thermoanaerobacterium xylanolyticum
LX-11]
gi|333112395|gb|AEF17332.1| Ribosome-recycling factor [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 184
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I L EL +R GRA+P +LD I ++ G P+N LA ++ + K + I P+D
Sbjct: 12 MKKSIAVLKNELMSIRAGRANPALLDRISIDYYGTMTPINKLATITAPEPKIIIIQPWDT 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI S L +NP DG+ + P LT+E + + K+V K E+ K ++R+ R
Sbjct: 72 SKISEIEKAIQKSDLNINPTSDGKIIRLVFPDLTEERRKELVKLVHKKGEEAKVAVRQIR 131
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+ + E+ + +LT KY+K D I + KEKEI E
Sbjct: 132 RDANDAIKKMDKNGEISEDEKLKSEENVQKLTDKYIKEIDKILEQKEKEIME 183
>gi|441515301|ref|ZP_20997105.1| ribosome-recycling factor [Gordonia amicalis NBRC 100051]
gi|441449863|dbj|GAC55066.1| ribosome-recycling factor [Gordonia amicalis NBRC 100051]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ ++ +RTGRA+P M + I +E G P+ +A ++ + + + I PY+
Sbjct: 13 MEKAVNVAKEDMGSIRTGRANPSMFNKINIEYYGAMTPVTQVASINTPEPRLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TL+++E AI +S LG+NP DG + AIP LT+E + + K ED K +IR R
Sbjct: 73 STLRDIETAIRNSDLGVNPTNDGTIIRVAIPQLTEERRRDLVKQAKGKGEDAKVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA D +K+ +D++ R EKE+D+ T YV D++ K KE E+ E
Sbjct: 133 RKAADELKRIQKDGEAGEDEVTRAEKELDKTTATYVHQIDELVKHKEDELLE 184
>gi|365120611|ref|ZP_09338078.1| ribosome recycling factor [Tannerella sp. 6_1_58FAA_CT1]
gi|363647411|gb|EHL86637.1| ribosome recycling factor [Tannerella sp. 6_1_58FAA_CT1]
Length = 186
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 105/169 (62%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ L L +R G+AS +LD + VE G +P++++A ++ D+KT++I P++
Sbjct: 15 MAMSVEFLDEALATIRAGKASARILDPVRVEYYGSMVPISNVATITTPDAKTIAIQPWEK 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ KE+E AI +S +G+ P +G+ + +P LT+E +A+ K + +E+ K S+R +R
Sbjct: 75 SMFKEIEKAIQNSEVGITPENNGEIIRLGLPPLTEERRKALVKQAKQEAENAKVSVRNAR 134
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KKA + +P+D K E + ++ KY+K DDI AKEKEI
Sbjct: 135 RDAIDGLKKAIKAGMPEDVEKDGEASVQKIHDKYIKKIDDIFNAKEKEI 183
>gi|15674582|ref|NP_268756.1| ribosome recycling factor [Streptococcus pyogenes SF370]
gi|21909863|ref|NP_664131.1| ribosome recycling factor [Streptococcus pyogenes MGAS315]
gi|28896442|ref|NP_802792.1| ribosome recycling factor [Streptococcus pyogenes SSI-1]
gi|50913751|ref|YP_059723.1| ribosome recycling factor [Streptococcus pyogenes MGAS10394]
gi|71910193|ref|YP_281743.1| ribosome recycling factor [Streptococcus pyogenes MGAS5005]
gi|94988011|ref|YP_596112.1| ribosome recycling factor [Streptococcus pyogenes MGAS9429]
gi|94991895|ref|YP_599994.1| ribosome recycling factor [Streptococcus pyogenes MGAS2096]
gi|94993775|ref|YP_601873.1| ribosome recycling factor [Streptococcus pyogenes MGAS10750]
gi|139474297|ref|YP_001129013.1| ribosome recycling factor [Streptococcus pyogenes str. Manfredo]
gi|209558949|ref|YP_002285421.1| ribosome recycling factor [Streptococcus pyogenes NZ131]
gi|306827884|ref|ZP_07461152.1| ribosome recycling factor [Streptococcus pyogenes ATCC 10782]
gi|383479567|ref|YP_005388461.1| ribosome recycling factor protein Frr [Streptococcus pyogenes
MGAS15252]
gi|383493487|ref|YP_005411163.1| ribosome recycling factor protein Frr [Streptococcus pyogenes
MGAS1882]
gi|410680068|ref|YP_006932470.1| ribosome recycling factor [Streptococcus pyogenes A20]
gi|417857398|ref|ZP_12502457.1| ribosome recycling factor [Streptococcus pyogenes HKU
QMH11M0907901]
gi|421892344|ref|ZP_16323022.1| Ribosome recycling factor [Streptococcus pyogenes NS88.2]
gi|57014111|sp|P68903.1|RRF_STRP1 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|57014114|sp|Q5XDH3.1|RRF_STRP6 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166231514|sp|Q1JD58.1|RRF_STRPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166231515|sp|Q1JN31.1|RRF_STRPC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166231516|sp|Q1JI77.1|RRF_STRPD RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166231517|sp|Q1J832.1|RRF_STRPF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166231518|sp|A2RG30.1|RRF_STRPG RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|226749943|sp|B5XK64.1|RRF_STRPZ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|342179258|sp|P0DF38.1|RRF_STRP3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|342179259|sp|P0DF39.1|RRF_STRPQ RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|13621691|gb|AAK33477.1| putative ribosome recycling factor [Streptococcus pyogenes M1 GAS]
gi|21904050|gb|AAM78934.1| putative ribosome recycling factor [Streptococcus pyogenes MGAS315]
gi|28811693|dbj|BAC64625.1| putative ribosome recycling factor [Streptococcus pyogenes SSI-1]
gi|50902825|gb|AAT86540.1| Ribosome Recycling Factor [Streptococcus pyogenes MGAS10394]
gi|71852975|gb|AAZ50998.1| ribosome recycling factor [Streptococcus pyogenes MGAS5005]
gi|94541519|gb|ABF31568.1| ribosome recycling factor (RRF) [Streptococcus pyogenes MGAS9429]
gi|94543398|gb|ABF33446.1| Ribosome Recycling Factor (RRF) [Streptococcus pyogenes MGAS10270]
gi|94545403|gb|ABF35450.1| Ribosome Recycling Factor (RRF) [Streptococcus pyogenes MGAS2096]
gi|94547283|gb|ABF37329.1| Ribosome Recycling Factor (RRF) [Streptococcus pyogenes MGAS10750]
gi|134272544|emb|CAM30809.1| ribosome recycling factor [Streptococcus pyogenes str. Manfredo]
gi|209540150|gb|ACI60726.1| Ribosome recycling factor [Streptococcus pyogenes NZ131]
gi|304429932|gb|EFM32973.1| ribosome recycling factor [Streptococcus pyogenes ATCC 10782]
gi|378927557|gb|AFC65763.1| ribosome recycling factor protein Frr [Streptococcus pyogenes
MGAS15252]
gi|378929215|gb|AFC67632.1| ribosome recycling factor protein Frr [Streptococcus pyogenes
MGAS1882]
gi|379981900|emb|CCG26744.1| Ribosome recycling factor [Streptococcus pyogenes NS88.2]
gi|387934353|gb|EIK42466.1| ribosome recycling factor [Streptococcus pyogenes HKU
QMH11M0907901]
gi|395453436|dbj|BAM29775.1| ribosome recycling factor [Streptococcus pyogenes M1 476]
gi|409692657|gb|AFV37517.1| ribosome recycling factor [Streptococcus pyogenes A20]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+LSRE +R GRA+ +LD I V+ G PLN LA ++V +++ L I+P+D +++K++
Sbjct: 19 SLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDD 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KK + +D++K LEK+I + T +K D + KEKE+
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKEL 182
>gi|16800419|ref|NP_470687.1| ribosome recycling factor [Listeria innocua Clip11262]
gi|423100393|ref|ZP_17088100.1| ribosome recycling factor [Listeria innocua ATCC 33091]
gi|22001944|sp|Q92C40.1|RRF_LISIN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|16413824|emb|CAC96582.1| frr [Listeria innocua Clip11262]
gi|370793394|gb|EHN61232.1| ribosome recycling factor [Listeria innocua ATCC 33091]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A AL+R+L +R GRA+ +LD + V+ G P+N +A +SV +++ L I PYD
Sbjct: 13 MEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISVPEARMLLITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+E AI+ S LGL P DG L +IP LT+E + + K V K +E+ K ++R R
Sbjct: 73 TILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A + +KK + +D ++ +++ +LT + +K+ D I K KE EI E
Sbjct: 133 REANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILE 184
>gi|217964539|ref|YP_002350217.1| ribosome recycling factor [Listeria monocytogenes HCC23]
gi|290893573|ref|ZP_06556556.1| ribosome recycling factor [Listeria monocytogenes FSL J2-071]
gi|315282161|ref|ZP_07870629.1| ribosome recycling factor [Listeria marthii FSL S4-120]
gi|386008085|ref|YP_005926363.1| frr [Listeria monocytogenes L99]
gi|386026686|ref|YP_005947462.1| putative ribosome recycling factor [Listeria monocytogenes M7]
gi|404407751|ref|YP_006690466.1| ribosome recycling factor [Listeria monocytogenes SLCC2376]
gi|422409527|ref|ZP_16486488.1| ribosome recycling factor [Listeria monocytogenes FSL F2-208]
gi|422809394|ref|ZP_16857805.1| Ribosome recycling factor [Listeria monocytogenes FSL J1-208]
gi|254809517|sp|B8DG13.1|RRF_LISMH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|217333809|gb|ACK39603.1| ribosome recycling factor [Listeria monocytogenes HCC23]
gi|290556918|gb|EFD90449.1| ribosome recycling factor [Listeria monocytogenes FSL J2-071]
gi|307570895|emb|CAR84074.1| frr [Listeria monocytogenes L99]
gi|313608995|gb|EFR84735.1| ribosome recycling factor [Listeria monocytogenes FSL F2-208]
gi|313614193|gb|EFR87869.1| ribosome recycling factor [Listeria marthii FSL S4-120]
gi|336023267|gb|AEH92404.1| putative ribosome recycling factor [Listeria monocytogenes M7]
gi|378753008|gb|EHY63593.1| Ribosome recycling factor [Listeria monocytogenes FSL J1-208]
gi|404241900|emb|CBY63300.1| ribosome recycling factor [Listeria monocytogenes SLCC2376]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A AL+R+L +R GRA+ +LD + V+ G P+N +A +SV +++ L I PYD
Sbjct: 13 MEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+E AI+ S LGL P DG L +IP LT+E + + K V K +E+ K ++R R
Sbjct: 73 TILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A + +KK S + +D ++ +++ +LT + +K+ D I K KE EI E
Sbjct: 133 REANEELKKLEKSGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILE 184
>gi|251781912|ref|YP_002996214.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|386316441|ref|YP_006012605.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410494230|ref|YP_006904076.1| ribosome-recycling factor [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417751597|ref|ZP_12399880.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|417928656|ref|ZP_12572044.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|242390541|dbj|BAH81000.1| ribosome releasing factor [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|323126728|gb|ADX24025.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333772652|gb|EGL49482.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|340766530|gb|EGR89056.1| ribosome recycling factor [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|410439390|emb|CCI62018.1| Ribosome-recycling factor [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+LSRE +R GRA+ +LD I V+ G PLN LA ++V +++ L I+P+D +++K++
Sbjct: 19 SLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDD 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KK + +D++K LEK+I + T +K D + KEKE+
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKEL 182
>gi|443314164|ref|ZP_21043747.1| ribosome recycling factor [Leptolyngbya sp. PCC 6406]
gi|442786236|gb|ELR95993.1| ribosome recycling factor [Leptolyngbya sp. PCC 6406]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ A R +RTGRA+ +LD ++V+ G PL LA ++ D+ TLSI P+DP
Sbjct: 13 MAKAVEATRRAFNTIRTGRANASLLDKVMVDYYGSPTPLKSLANINTPDASTLSIQPFDP 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++ +E AI S +GL P DG+ + IP LT E + KV +K +E+ + S+R R
Sbjct: 73 SSVSAIEKAISLSDIGLTPNNDGKIIRLNIPPLTSERRKEFVKVASKYAEEGRVSVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++ +D +K S + +D+ + L++++ LT KYV D KEK+I
Sbjct: 133 REGIDRFRKQEKDSEISEDESRDLQEQVQSLTDKYVALVDQAFADKEKDI 182
>gi|429330788|ref|ZP_19211570.1| ribosome recycling factor [Pseudomonas putida CSV86]
gi|428764568|gb|EKX86701.1| ribosome recycling factor [Pseudomonas putida CSV86]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I AL R L +RTGRA P +LD + V G +MPLN +A VSV D++TL I +D
Sbjct: 13 MGKSIEALGRNLAAIRTGRAHPSILDSVKVPAWGSEMPLNQVAAVSVEDARTLKIVAHDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N +E AI++S LGLNP G + +PALT+E + K +E+ K ++R R
Sbjct: 73 NLSAAIEKAILTSDLGLNPSSAGTTIRVPMPALTEETRKGYTKQARGVAEEAKVAVRNVR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ AL +KK + +D+ +R E+ +LT K+V D +AKEK++
Sbjct: 133 RDALADLKKLAKDKEISEDEERRASDELQKLTDKFVAEVDKALEAKEKDL 182
>gi|126726888|ref|ZP_01742727.1| ribosome recycling factor [Rhodobacterales bacterium HTCC2150]
gi|126703846|gb|EBA02940.1| ribosome recycling factor [Rhodobacterales bacterium HTCC2150]
Length = 188
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +L E LRTGRA+ MLD I VE G + P+N + V+V + + L+IN +D
Sbjct: 17 MDGAMTSLKSEFQTLRTGRAAATMLDPISVEAYGQRTPINQVGTVNVPEPRMLTINVWDK 76
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ +E AI S LG+NP VDG + IP L +E + + KV A+ +E K ++R R
Sbjct: 77 TMVQAVEKAIRESGLGINPVVDGTIIRLPIPELNEERRRELTKVAAQYAESAKVAVRNVR 136
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +D +KKA G+ + +D K EI E+T + + D AK++EI
Sbjct: 137 RDGMDQIKKAKGNGMGEDDQKIWADEIQEVTDAAIAAVDASLAAKQEEI 185
>gi|167037634|ref|YP_001665212.1| ribosome recycling factor [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|167040295|ref|YP_001663280.1| ribosome recycling factor [Thermoanaerobacter sp. X514]
gi|256750775|ref|ZP_05491660.1| ribosome recycling factor [Thermoanaerobacter ethanolicus CCSD1]
gi|300914379|ref|ZP_07131695.1| ribosome recycling factor [Thermoanaerobacter sp. X561]
gi|307724385|ref|YP_003904136.1| ribosome recycling factor [Thermoanaerobacter sp. X513]
gi|320116049|ref|YP_004186208.1| ribosome recycling factor [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|238687580|sp|B0K1P6.1|RRF_THEPX RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|238687714|sp|B0K9R3.1|RRF_THEP3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166854535|gb|ABY92944.1| ribosome recycling factor [Thermoanaerobacter sp. X514]
gi|166856468|gb|ABY94876.1| ribosome recycling factor [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|256750358|gb|EEU63377.1| ribosome recycling factor [Thermoanaerobacter ethanolicus CCSD1]
gi|300889314|gb|EFK84460.1| ribosome recycling factor [Thermoanaerobacter sp. X561]
gi|307581446|gb|ADN54845.1| ribosome recycling factor [Thermoanaerobacter sp. X513]
gi|319929140|gb|ADV79825.1| ribosome recycling factor [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 184
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ L EL +R GRA+P +LD I+V+ G PLN LA ++ + + L + P+D
Sbjct: 12 MQKSLSVLKNELAAIRAGRANPALLDRIMVDYYGTPTPLNRLATITAPEPRVLVVQPWDV 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI S LG+NP DG+ L P LT+E + + K+V K +E+ K ++R+ R
Sbjct: 72 SKISDIEKAIQKSDLGINPVSDGKVLRLVFPELTEERRKELVKLVHKKAEEAKVAVRQIR 131
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +KK + +D+ K+ E+EI +LT KY+K D + +AKEKEI E
Sbjct: 132 RDANDAVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKVVEAKEKEIME 183
>gi|238650359|ref|YP_002916211.1| ribosome recycling factor [Rickettsia peacockii str. Rustic]
gi|374318936|ref|YP_005065434.1| Ribosome recycling factor [Rickettsia slovaca 13-B]
gi|383483539|ref|YP_005392452.1| ribosome recycling factor [Rickettsia parkeri str. Portsmouth]
gi|383750835|ref|YP_005425936.1| ribosome recycling factor [Rickettsia slovaca str. D-CWPP]
gi|259494554|sp|C4K0R2.1|RRF_RICPU RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|238624457|gb|ACR47163.1| ribosome recycling factor [Rickettsia peacockii str. Rustic]
gi|360041484|gb|AEV91866.1| Ribosome recycling factor [Rickettsia slovaca 13-B]
gi|378935893|gb|AFC74393.1| ribosome recycling factor [Rickettsia parkeri str. Portsmouth]
gi|379773849|gb|AFD19205.1| ribosome recycling factor [Rickettsia slovaca str. D-CWPP]
Length = 186
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L EL LRTGRAS +LD + VE G KMPL+ +A +S D++T+++ +D
Sbjct: 14 MEKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E I + LGL P DGQ + IPALT+E + K+ K ED K S+R R
Sbjct: 74 SMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTELVKLAHKYGEDTKISLRNIR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + +KK + + KD+ L +++ +LT Y D + K KE+EI
Sbjct: 134 RDGNEALKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEI 183
>gi|134102473|ref|YP_001108134.1| ribosome recycling factor [Saccharopolyspora erythraea NRRL 2338]
gi|291004136|ref|ZP_06562109.1| ribosome recycling factor [Saccharopolyspora erythraea NRRL 2338]
gi|166231222|sp|A4FMD4.1|RRF_SACEN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|133915096|emb|CAM05209.1| ribosome recycling factor [Saccharopolyspora erythraea NRRL 2338]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ EL +RTGRA+P M I+V+ G PLN LA +SV +++ + I PYD
Sbjct: 13 MQKAVEVAKDELATVRTGRANPAMFSGIVVDYYGSPTPLNQLASISVPEARLVVIKPYDA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
+ L +E AI S LG+NP DGQ + +IP +T+E + M K+ E+ + + IR
Sbjct: 73 SQLGAMEKAIRDSDLGVNPSNDGQLIRVSIPQMTEERRKEMVKLAKHKGEEGRITVRGIR 132
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
R ++ +D + K G + +D+ R EKE++ LT +YV D++ K KE E+ E
Sbjct: 133 RKVKEEIDRIVKDGEA-GEDEGTRGEKELENLTHRYVAQIDELVKHKEAELLE 184
>gi|395238292|ref|ZP_10416229.1| Ribosome-recycling factor [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477864|emb|CCI86206.1| Ribosome-recycling factor [Lactobacillus gigeriorum CRBIP 24.85]
Length = 192
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME +I R L +R G A+ G+L+ + VE GV PL ++ +++ + + L + PYD
Sbjct: 19 MEKSIKVYQRNLASIRAGVANAGLLEGVRVEYYGVPTPLTQMSSITIPEPRVLLVTPYDV 78
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N+L +E AI++S LGL P DG+ + IP LT E Q + K V K +E+ K SIR R
Sbjct: 79 NSLDNIEHAILASNLGLTPANDGKVIRLVIPQLTGERRQEIAKQVGKEAEEAKISIRNIR 138
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
+ A++ +KK + +D+ + LEK++ ++T K D + K KEI +G
Sbjct: 139 RDAMNSLKKQQKDDEITEDEQRNLEKQVQKVTDDATKKIDQLADTKRKEITQG 191
>gi|239948540|ref|ZP_04700293.1| ribosome recycling factor [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239922816|gb|EER22840.1| ribosome recycling factor [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 202
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L EL LRTGRAS +LD + VE G KMPL+ +A +S D++T+++ +D
Sbjct: 30 MEKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDK 89
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E I + LGL P DGQ + IPALT+E + + K+ K ED K S+R R
Sbjct: 90 SMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRKELVKLAHKYGEDTKISLRNIR 149
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + +KK + + KD+ L +++ +LT Y D + K KE+EI
Sbjct: 150 RDGNEELKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEI 199
>gi|383312166|ref|YP_005364967.1| ribosome recycling factor [Candidatus Rickettsia amblyommii str.
GAT-30V]
gi|378930826|gb|AFC69335.1| ribosome recycling factor [Candidatus Rickettsia amblyommii str.
GAT-30V]
Length = 186
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ L EL LRTGRAS +LD++ VE G KMPL+ +A +S D++T+++ +D
Sbjct: 14 MEKALKVLDHELKGLRTGRASVNLLDNVTVEAYGSKMPLSQVASLSTPDARTINVQVWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E I + LGL P DGQ + IPALT+E + + K+ K ED K ++R R
Sbjct: 74 SMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRKELVKLAHKYGEDTKIALRNIR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ + +KK + + KD+ L +++ +LT Y D + K KE+EI
Sbjct: 134 RDGNEELKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQKEQEI 183
>gi|226940990|ref|YP_002796064.1| ribosome recycling factor [Laribacter hongkongensis HLHK9]
gi|254809516|sp|C1D9F3.1|RRF_LARHH RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|226715917|gb|ACO75055.1| Frr [Laribacter hongkongensis HLHK9]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I A L K+RTGRA G+LDHI V+ G P+N +A V+++D++T+ + ++
Sbjct: 13 MQKTIEAFKHTLAKVRTGRAHAGLLDHITVDYYGSDTPINQVANVTLIDARTIGVQVWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N ++E AI S LGLNP G+ + +PALT+E + + KVV +ED + ++R R
Sbjct: 73 NMAAKVEKAIRDSDLGLNPMSMGEVIRVPMPALTEERRRDLTKVVKGEAEDARVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A + +K + +D+ +R + +I +LT KYV D + KEKE+
Sbjct: 133 RDANNDLKTLLKDKDITEDEERRAQDDIQKLTDKYVAEVDKLFAEKEKEL 182
>gi|126173691|ref|YP_001049840.1| ribosome recycling factor [Shewanella baltica OS155]
gi|217974057|ref|YP_002358808.1| ribosome recycling factor [Shewanella baltica OS223]
gi|373948851|ref|ZP_09608812.1| Ribosome-recycling factor [Shewanella baltica OS183]
gi|386325308|ref|YP_006021425.1| Ribosome-recycling factor [Shewanella baltica BA175]
gi|386340449|ref|YP_006036815.1| Ribosome-recycling factor [Shewanella baltica OS117]
gi|418023475|ref|ZP_12662460.1| Ribosome-recycling factor [Shewanella baltica OS625]
gi|166231224|sp|A3D2K8.1|RRF_SHEB5 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|254809529|sp|B8E7R3.1|RRF_SHEB2 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|125996896|gb|ABN60971.1| ribosome recycling factor [Shewanella baltica OS155]
gi|217499192|gb|ACK47385.1| ribosome recycling factor [Shewanella baltica OS223]
gi|333819453|gb|AEG12119.1| Ribosome-recycling factor [Shewanella baltica BA175]
gi|334862850|gb|AEH13321.1| Ribosome-recycling factor [Shewanella baltica OS117]
gi|353537358|gb|EHC06915.1| Ribosome-recycling factor [Shewanella baltica OS625]
gi|373885451|gb|EHQ14343.1| Ribosome-recycling factor [Shewanella baltica OS183]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
A ++ K+RTGRA P +LD I V G PLN +A V V DS+TLS+ +D + ++ +
Sbjct: 19 ATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAV 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI+SS LGLNP G L +PALT+E + KVV +E+ + +IR R+ A+
Sbjct: 79 EKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNEAENGRIAIRNVRRDAISE 138
Query: 127 MKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KK + +D ++R E+E+ + T ++K D+I AKE E+ E
Sbjct: 139 VKKLEKAKACTEDDVRRSEEEVQKFTDAHIKKIDEILAAKEIELME 184
>gi|304436535|ref|ZP_07396508.1| ribosome recycling factor [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304370478|gb|EFM24130.1| ribosome recycling factor [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL RE + LR GRA+P +LD I+V G +N LA V+V + + I P++
Sbjct: 13 MSKAIEALRREFSSLRAGRATPNLLDKIMVPYYGTPTSVNQLAKVTVPEPHMIVITPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L E+E AI S LGL+P DG + AIP T+E + + K V K +E+ K ++R R
Sbjct: 73 SILHEIEIAISKSDLGLSPNSDGNVIRLAIPQPTQERRKELIKTVGKKTEEAKVALRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + +KK + +D+ KR + + +L K+VK D++ AKEKE+ E
Sbjct: 133 RDANEAIKKLEKDKEINEDESKRGQDSVQKLVDKFVKQMDEMRAAKEKEVME 184
>gi|172040501|ref|YP_001800215.1| ribosome recycling factor [Corynebacterium urealyticum DSM 7109]
gi|448823479|ref|YP_007416644.1| ribosome recycling factor [Corynebacterium urealyticum DSM 7111]
gi|238057837|sp|B1VG92.1|RRF_CORU7 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|171851805|emb|CAQ04781.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
gi|448276976|gb|AGE36400.1| ribosome recycling factor [Corynebacterium urealyticum DSM 7111]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 100/168 (59%), Gaps = 3/168 (1%)
Query: 6 VALSRE-LTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLK 64
V +RE LT +RTGRA+P M + +I E GV P+ +A +SV +++ + I PY+ + ++
Sbjct: 17 VEFAREDLTTIRTGRANPAMFNSVIAEYYGVPTPITQMATISVPEARMMLIKPYEQSQIQ 76
Query: 65 ELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKAL 124
+E AI +S LG+NP DGQ L IP LT+E + M + ED K +IR R+ +
Sbjct: 77 VIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRREMVRQAKSKGEDAKIAIRNIRRHGM 136
Query: 125 DMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + K +D+++ E E++++T YVK D++ + KE+E+ E
Sbjct: 137 EQLAKIQKDGDAGEDEVRASENELEKITSNYVKQVDELVERKEEELME 184
>gi|456862186|gb|EMF80764.1| ribosome recycling factor [Leptospira weilii serovar Topaz str.
LT2116]
Length = 184
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 98/169 (57%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME I L ++L +RTGRA+P +++ I V+ G P+N L +SV + + L I+PYD
Sbjct: 14 MEKTIDLLKKDLGTVRTGRANPSLVEDIRVDYYGTLTPINQLGNISVPEPRMLVISPYDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+K++E AI +S LGL P DG + IP LT E + + K+V SED K +IR R
Sbjct: 74 GIMKDIEKAIQTSGLGLQPSNDGVVIRIVIPELTGERRKELAKIVKSKSEDKKVAIRNIR 133
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
+ A++ +KK L +D++K ++ +I + T Y+ + KEKEI
Sbjct: 134 RDAMEDLKKHTEGLSQDEVKTVQDQIQKTTDSYIDKISALTAEKEKEIT 182
>gi|430835687|ref|ZP_19453675.1| ribosome-recycling factor [Enterococcus faecium E0680]
gi|430871449|ref|ZP_19483772.1| ribosome-recycling factor [Enterococcus faecium E1575]
gi|430489224|gb|ELA65853.1| ribosome-recycling factor [Enterococcus faecium E0680]
gi|430557769|gb|ELA97206.1| ribosome-recycling factor [Enterococcus faecium E1575]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A L REL ++R GRA+ +LD I V G PLN +A + + +++ L + P+D
Sbjct: 13 MKKAAQNLQRELGQIRAGRANASLLDRITVNYYGAPTPLNQMASIQIPEARVLMVTPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+++E AI++S +G++P DG + IP LT+E + + K V K +E+ K +IR R
Sbjct: 73 SILQDVEKAIMASDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENAKIAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A+D KK + +D ++ LEK++ LT +K D I KEKE+ E
Sbjct: 133 RDAIDEYKKQQKNGDITEDDLRGLEKDVQTLTDNSIKEVDKIAADKEKELLE 184
>gi|184155193|ref|YP_001843533.1| ribosome recycling factor [Lactobacillus fermentum IFO 3956]
gi|260662307|ref|ZP_05863203.1| ribosome recycling factor [Lactobacillus fermentum 28-3-CHN]
gi|183226537|dbj|BAG27053.1| ribosome recycling factor [Lactobacillus fermentum IFO 3956]
gi|260553690|gb|EEX26582.1| ribosome recycling factor [Lactobacillus fermentum 28-3-CHN]
Length = 186
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 97/167 (58%), Gaps = 2/167 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
AL R L +R GRA+ +L+ + VE G PLN LA +++ +++ L I+PYD TLK++
Sbjct: 20 ALKRTLADIRAGRANASLLNTVTVEYYGAPTPLNQLASITIPEARQLLISPYDKTTLKDI 79
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E AI S LGL P+ DG+ + +P LT++ + + K V E K ++R R++A+D
Sbjct: 80 ERAIYESNLGLTPQNDGETIRLVVPQLTEDRRKELVKDVKAEMEKAKVAVRNVRREAMDD 139
Query: 127 MKKAG--SSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
+KK D+ LEK++ E T +K+ + I KEKE+ EG
Sbjct: 140 LKKGNKDGDFNDDEFHDLEKQVQEETDAGIKNLEQIAADKEKELLEG 186
>gi|383758589|ref|YP_005437574.1| ribosome recycling factor Rrf [Rubrivivax gelatinosus IL144]
gi|381379258|dbj|BAL96075.1| ribosome recycling factor Rrf [Rubrivivax gelatinosus IL144]
Length = 186
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ + EL K+RTGRA PG+LD + VE G +P++ +A VS+LD++T+S+ P++
Sbjct: 14 MAKSVDSFKNELHKIRTGRAHPGILDQVHVEYYGSMLPISQVANVSLLDARTISVQPWEK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++E AI S LGLNP G L +PALT+E + + KVV T E+ K +R R
Sbjct: 74 GMGAKIEKAIRESDLGLNPSAQGDLLRVPMPALTEERRKELTKVVRHTGEEAKIHVRAVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A + +KK + +D +R + E+ LT + + D + +AKE E+
Sbjct: 134 RDANEQLKKLVKDKLVSEDDERRGQDEVQRLTDRTIAEIDKLVQAKEAEV 183
>gi|341821280|emb|CCC57638.1| ribosome-recycling factor (RRF) (Ribosome-releasing factor)
[Weissella thailandensis fsh4-2]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL REL +R G A+P +L +I E G PLN LA V+V +++ L I P+D
Sbjct: 13 MDKAGDALRRELGNIRAGVANPSILRNITAEYYGADTPLNQLASVTVPEARVLLITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LK +E AI +S LGL P DG + IPALT+E + + K V SE K ++R R
Sbjct: 73 TALKGIEQAIFASDLGLTPANDGSVIRLVIPALTEETRKDLAKEVKAESEKAKVAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D KKA + L +D+ +E I + T +K+ D+I KEKE+
Sbjct: 133 RDAMDDAKKALKNNDLSEDEAHSVEDNIQKATDAAIKNVDEIAADKEKEL 182
>gi|255029475|ref|ZP_05301426.1| ribosome recycling factor [Listeria monocytogenes LO28]
Length = 182
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A AL+R+L +R GRA+ +LD + V+ G P+N +A +SV +++ L I PYD
Sbjct: 13 MEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+E AI+ S LGL P DG L +IP LT+E + + K V K +E+ K ++R R
Sbjct: 73 TILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++A + +KK + +D ++ +++ +LT + +K+ D I K KE EI
Sbjct: 133 REANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEI 182
>gi|441509955|ref|ZP_20991867.1| ribosome-recycling factor [Gordonia aichiensis NBRC 108223]
gi|441445970|dbj|GAC49828.1| ribosome-recycling factor [Gordonia aichiensis NBRC 108223]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ ++ +RTGRA+P M + I +E G P+ +A ++ +++ + I PY+
Sbjct: 13 MEKAVGVAREDMGSIRTGRANPSMFNKIHIEYYGALTPITQVASITTPEARLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+++E AI +S LG+NP DG + AIP LT++ + + K ED K +IR R
Sbjct: 73 SNLRDIETAIRNSDLGVNPTNDGNLIRVAIPQLTEDRRKDLVKQAKGKGEDAKVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA+D +K+ +D++ R EKE+D+ T YV D++ K KE E+ E
Sbjct: 133 RKAVDELKRIQKDGEAGEDEVSRAEKELDKTTAGYVHQVDELVKHKESELLE 184
>gi|410463038|ref|ZP_11316580.1| ribosome recycling factor [Desulfovibrio magneticus str. Maddingley
MBC34]
gi|409983860|gb|EKO40207.1| ribosome recycling factor [Desulfovibrio magneticus str. Maddingley
MBC34]
Length = 184
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ AL +E ++LRTGRA+ +LD + V+ G L+ LA V+ DS+T++I P+D
Sbjct: 12 MKKALAALDKEFSRLRTGRATTSLLDGVRVDYYGTSTQLDQLASVATPDSRTITIQPWDR 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++E AI+ S LGL P DG+ + +IP LT++ + + KV K E+ K ++R R
Sbjct: 72 KAFADIEKAILKSGLGLTPVNDGKVIRISIPPLTEDRRKDLVKVAKKYVEEAKVAMRNVR 131
Query: 121 QKALDMMKKAGS--SLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A +++KK + ++ +D ++ ++++ +LT Y+ D+ KEKEI E
Sbjct: 132 RDANELLKKKKNDKAINEDDQRKGQEDVQKLTDNYIAKTDEAFSKKEKEIME 183
>gi|383818722|ref|ZP_09974007.1| ribosome recycling factor [Mycobacterium phlei RIVM601174]
gi|383338186|gb|EID16552.1| ribosome recycling factor [Mycobacterium phlei RIVM601174]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +RTGRA+PGM + V+ G P+ L+ ++V +++ + I PY+
Sbjct: 13 MEKAVSVARDDLGSIRTGRANPGMFARVSVDYYGSPTPITQLSSINVPEARLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L+ +E AI +S LG+NP DG + AIP LT+E + + K ED K S+R R
Sbjct: 73 NQLRNIEEAIRNSDLGVNPTNDGNVIRVAIPQLTEERRRDLVKQAKAKGEDAKVSVRNIR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ + KK G + +D++ R EK++D++T Y D++ K KE E+ E
Sbjct: 133 RKAMEELHRIKKDGEA-GEDEVARAEKDLDKITATYTSQIDELVKHKEGELLE 184
>gi|25028466|ref|NP_738520.1| ribosome recycling factor [Corynebacterium efficiens YS-314]
gi|259507526|ref|ZP_05750426.1| ribosome recycling factor [Corynebacterium efficiens YS-314]
gi|29336541|sp|Q8FP75.1|RRF_COREF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|23493751|dbj|BAC18720.1| putative ribosome recycling factor [Corynebacterium efficiens
YS-314]
gi|259164911|gb|EEW49465.1| ribosome recycling factor [Corynebacterium efficiens YS-314]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 96/162 (59%), Gaps = 2/162 (1%)
Query: 11 ELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAI 70
+L +RTGRA+P M + ++ E GV P+ ++ +SV + + L I PY+ +++ +E AI
Sbjct: 23 DLITIRTGRANPAMFNGVLAEYYGVPTPITQMSSISVPEPRMLIIKPYEMSSMGVIENAI 82
Query: 71 VSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK- 129
+S LG+NP DGQ L IP LT+E + M K+ ED K +IR R+K ++ +KK
Sbjct: 83 RNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKIAKGKGEDGKIAIRNVRRKGMEQLKKL 142
Query: 130 -AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+D++ EKE+D++T YV+ D+I KE E+ E
Sbjct: 143 QKDGEFGEDEVAAAEKELDKITAHYVEQVDEIVARKEAELME 184
>gi|320527474|ref|ZP_08028655.1| ribosome recycling factor [Solobacterium moorei F0204]
gi|320132187|gb|EFW24736.1| ribosome recycling factor [Solobacterium moorei F0204]
Length = 182
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 96/168 (57%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I L EL +RTG A+ MLD + V+ G PLN +A +SV + +TL I PYDP
Sbjct: 13 MDKVIDHLQSELNTVRTGAANVKMLDRVEVDYYGSPTPLNQIAALSVSEGRTLVIKPYDP 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK +E A + LG+ P DG + +P LT E + M K V K E+ K IR R
Sbjct: 73 SSLKAIEHACNEADLGIAPSNDGTVIRLTVPQLTGETRKEMTKKVDKMGEECKIQIRNIR 132
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+ ++KK ++ +D K E EI +LT KY+K DD+ AK E+
Sbjct: 133 RDAMSVVKK-DKTMDEDIQKDCENEIQKLTDKYIKKIDDLAAAKSAEV 179
>gi|422739383|ref|ZP_16794564.1| ribosome recycling factor [Enterococcus faecalis TX2141]
gi|315144762|gb|EFT88778.1| ribosome recycling factor [Enterococcus faecalis TX2141]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A +L REL ++R GRA+ +LD I V+ G P+N LA +++ +++ L I P+D
Sbjct: 13 MTKAEESLRRELGQIRAGRANASLLDRIQVKYYGAPTPVNQLASINIPEARVLMITPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N++ ++E AI S +G++P DG + IP LT+E + + K V K +E+ K ++R R
Sbjct: 73 NSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSKVAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KKA + +D+++ EK++ +LT +K+ D I KE+E+
Sbjct: 133 RDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQEL 182
>gi|21674395|ref|NP_662460.1| ribosome recycling factor [Chlorobium tepidum TLS]
gi|25453262|sp|Q8KC49.1|RRF_CHLTE RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|21647576|gb|AAM72802.1| ribosome recycling factor [Chlorobium tepidum TLS]
Length = 186
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I A EL +RTG+A+ +LD + VE G +MPL + V VLD+ TL++ +D
Sbjct: 14 MKKTIEAFQHELASIRTGKATTALLDRVKVEAYGSQMPLKQVGNVGVLDAHTLTVQVWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E AI + LGLNP DGQ + +IP LT+E + K+ K ED K S+R R
Sbjct: 74 SMVGATERAIRDAGLGLNPSADGQNIRISIPPLTEERRKEFVKLTKKFGEDSKVSLRNHR 133
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ + ++K + +D++KR +K+ D+L KY K ++ KEKEI E
Sbjct: 134 RDLIHEVEKLEKEKLISEDELKRGKKDADDLLHKYEKQITELIAQKEKEIME 185
>gi|418052973|ref|ZP_12691050.1| Ribosome-recycling factor [Mycobacterium rhodesiae JS60]
gi|353179761|gb|EHB45318.1| Ribosome-recycling factor [Mycobacterium rhodesiae JS60]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L+ +RTGRA+PGM ++V+ G P+ L+ V+V +++ + I PY+
Sbjct: 13 MEKAVAVARDDLSSIRTGRANPGMFSRVVVDYYGSPTPITQLSSVNVPEARMVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L+ +E AI +S LG+NP DG + +IP LT+E + + K ED K S+R R
Sbjct: 73 SQLRAIEDAIRNSDLGVNPTNDGNIIRVSIPQLTEERRRDLVKQAKSKGEDAKVSVRNVR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A++ + +K G + +D++ R EK++D+ T YV D++ K KE E+ E
Sbjct: 133 RRAMEELHRIRKDGEA-GEDEVGRAEKDLDKATATYVGQIDELVKHKEGELLE 184
>gi|118617645|ref|YP_905977.1| ribosome recycling factor [Mycobacterium ulcerans Agy99]
gi|166230805|sp|A0PQ87.1|RRF_MYCUA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|118569755|gb|ABL04506.1| ribosome recycling factor Frr [Mycobacterium ulcerans Agy99]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ ++ +RTGRA+PGM I+++ G P+ LA ++V +++ + I PY+
Sbjct: 13 MEKAVSVAREDMATIRTGRANPGMFSRIVIDYYGTHTPITQLASINVPEARMVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L +E AI +S LG+NP DG + A+P LT+E + + K E+ + S+R R
Sbjct: 73 NQLHAIETAIRNSDLGVNPTNDGTIIRVAVPQLTEERRRDLVKQAKHKGEEARVSVRNIR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ + +K G + +D++ R EK++D+ T +YV D++ K KE ++ E
Sbjct: 133 RKAMEELHRIRKDGEA-GEDEVARAEKDLDKSTHQYVAQIDELVKHKEGDLLE 184
>gi|171920233|ref|ZP_02690622.2| ribosome recycling factor [Ureaplasma parvum serovar 1 str. ATCC
27813]
gi|171902628|gb|EDT48917.1| ribosome recycling factor [Ureaplasma parvum serovar 1 str. ATCC
27813]
Length = 183
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 99/168 (58%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
E + + E KLRTGRA+P +LD I+V G MP+N LA +SV + + L+I PYD
Sbjct: 14 FELVLKWMHNEFIKLRTGRATPTILDGILVNYYGSMMPINQLANISVPEPRVLAIKPYDR 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++K++ AI +S LG+NP+VD + A T+E + + K + E+ K +R R
Sbjct: 74 SSIKDIATAINASNLGVNPQVDVDIIRLTFAAPTEEVRKNLVKKAKQVGEEAKIRVRHIR 133
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q+A D+ KK +++ D+ K + E+D LTK+ K + + KEK+I
Sbjct: 134 QEAQDLFKKDSTTIEDDK-KFFQTELDNLTKELNKEIETVVSHKEKDI 180
>gi|296284729|ref|ZP_06862727.1| ribosome recycling factor [Citromicrobium bathyomarinum JL354]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 96/170 (56%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +L +L LRTGRA+ +LD ++VE G MPLN +A VS + + LS+ +D
Sbjct: 13 MQGAVESLKGDLAGLRTGRANTSLLDPVVVEVYGSMMPLNQVATVSAPEPRMLSVQVWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E I + LGLNP DGQ L +P LT+E + + KV K E K +IR R
Sbjct: 73 GNVSAVEKGIAHANLGLNPMQDGQTLRIPMPDLTEERRKDLAKVADKYGESAKIAIRNVR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ ++ +K + + +D KR E E+ +LT KYV D + K+KEI
Sbjct: 133 RDGMEALKEDEKKKDISEDDRKRSEDEVQKLTDKYVADTDTAVEHKKKEI 182
>gi|429124558|ref|ZP_19185090.1| ribosome recycling factor [Brachyspira hampsonii 30446]
gi|426279569|gb|EKV56591.1| ribosome recycling factor [Brachyspira hampsonii 30446]
Length = 182
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 98/171 (57%), Gaps = 2/171 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +L +RTGRA+ +LD + VE G MPL + VS DS+T+ I P+D
Sbjct: 10 MEKAVSSLQNDLKGIRTGRANASILDGVKVEAYGSSMPLKQVGNVSTPDSRTIMIQPFDK 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI+ + LG NP DG + +P LTKE + + K V E+ K ++R R
Sbjct: 70 GLVSDIEKAILKADLGFNPFNDGGNIRIVVPELTKERREELKKGVRHRGEEAKIAVRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
+ D +KK ++ +D+ K EK+I T Y+K D++ AKEKE++
Sbjct: 130 RDENDKIKKELKDKTITEDESKSQEKKIQNDTDSYIKKIDEMITAKEKELD 180
>gi|383823902|ref|ZP_09979090.1| ribosome recycling factor [Mycobacterium xenopi RIVM700367]
gi|383338338|gb|EID16703.1| ribosome recycling factor [Mycobacterium xenopi RIVM700367]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L +RTGRA+PGM I+++ G P+ LA ++V +++ + I PY+
Sbjct: 13 MEKAVSVARDDLATIRTGRANPGMFSKIVIDYYGAPTPITQLASINVPEARLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L +E AI +S LG+NP DG + A+P LT+E + + K E+ + S+R R
Sbjct: 73 NQLHAIETAIRNSDLGVNPTNDGTLIRVAVPQLTEERRRELVKQARHKGEEARVSVRNIR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ + +K G + +D++ R EK++++ T +YV D++ K KE E+ E
Sbjct: 133 RKAMEELHRIRKEGEA-GEDEVGRAEKDLEKTTHQYVTQIDELVKHKEGELLE 184
>gi|219362787|ref|NP_001137010.1| hypothetical protein [Zea mays]
gi|194697972|gb|ACF83070.1| unknown [Zea mays]
gi|223972995|gb|ACN30685.1| unknown [Zea mays]
gi|413941645|gb|AFW74294.1| hypothetical protein ZEAMMB73_186637 [Zea mays]
gi|413941646|gb|AFW74295.1| hypothetical protein ZEAMMB73_186637 [Zea mays]
Length = 266
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 102/171 (59%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI + +RTGRASP MLD I VE G + L +A +S D+ +L I PYD
Sbjct: 94 MEKAIETVQTNFNTVRTGRASPAMLDRIEVEYYGTPVNLKSIAQISTPDATSLLIQPYDK 153
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
++LK +E IV++ LG+ P DG+ + +P LT + + + K VAK +ED K ++IR
Sbjct: 154 SSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEDGKVAIRNIR 213
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
R KA D ++K L +D +K L ++ ++T +Y+K+ D I K KE+E+
Sbjct: 214 RDAIKAYDKLQKE-KKLSEDNVKDLSADLQKVTDEYMKNIDSIQKQKEQEL 263
>gi|418055543|ref|ZP_12693597.1| Ribosome-recycling factor [Hyphomicrobium denitrificans 1NES1]
gi|353209821|gb|EHB75223.1| Ribosome-recycling factor [Hyphomicrobium denitrificans 1NES1]
Length = 187
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+I AL REL+ LRTGRAS +LD + V G +MPLN +A VSV + + +S+ +D
Sbjct: 15 MRASIDALKRELSGLRTGRASANLLDPVQVTVYGSRMPLNQVATVSVPEPRMISVQVWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++ I + LGLNP +DGQ L IP LT + Q + K+ K +E K ++R R
Sbjct: 75 SNVMAVDKGIREANLGLNPIIDGQILRLPIPTLTADRRQELVKLAHKYAEQSKVAVRNVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
++A+D++KK + +D + +++ ELT + +K D KE EI
Sbjct: 135 REAMDLLKKLEKDGKMSQDDHRGHSEKVQELTDRIIKEVDATLVTKEAEI 184
>gi|124022470|ref|YP_001016777.1| ribosome recycling factor [Prochlorococcus marinus str. MIT 9303]
gi|123962756|gb|ABM77512.1| Ribosome recycling factor [Prochlorococcus marinus str. MIT 9303]
Length = 173
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ A R +RTGRA+P +LD I VE G + PL LA +S DS+T++I P+D
Sbjct: 1 MHKSVEATQRNFATIRTGRANPSLLDRINVEYYGTETPLKSLATISTPDSQTIAIQPFDN 60
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ +E AI +S LGL P DG+ + +P LT+E + CK+ AK +E+ K ++R R
Sbjct: 61 GSMGLIEKAIATSDLGLTPNNDGKIIRINVPPLTEERRKEFCKLAAKYAEEGKVALRNIR 120
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D +KK + L KDQ + I +LT ++ + KE +I
Sbjct: 121 RDAIDKVKKLEKDAELSKDQSHDEQDGIQKLTDTFITEIEKYLAEKEADI 170
>gi|424793702|ref|ZP_18219779.1| ribosome recycling factor [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|433678497|ref|ZP_20510349.1| ribosome recycling factor [Xanthomonas translucens pv. translucens
DSM 18974]
gi|440731286|ref|ZP_20911320.1| ribosome recycling factor [Xanthomonas translucens DAR61454]
gi|422796442|gb|EKU24948.1| ribosome recycling factor [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|430816381|emb|CCP40839.1| ribosome recycling factor [Xanthomonas translucens pv. translucens
DSM 18974]
gi|440374125|gb|ELQ10865.1| ribosome recycling factor [Xanthomonas translucens DAR61454]
Length = 185
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I AL L K+RTGRAS +++H+ V G +MPL+ +A V+V D+++L+I+P++
Sbjct: 13 MAKSIDALRHTLIKVRTGRASTALVEHLKVNYYGSEMPLSQVASVAVADARSLTISPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI++S LGL P G + +PALT+E + + KVV ED K +IR R
Sbjct: 73 QMVSAVEKAILASDLGLTPNTSGTTIRLNLPALTEERRRELSKVVHGEGEDSKVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A +K + +D+ + E +I +LT K +K DD+ K KE+E+
Sbjct: 133 RDANQQIKDLLKDKHVTEDEARAAEDDIQKLTDKAIKDVDDVVKGKEQEL 182
>gi|347548704|ref|YP_004855032.1| putative ribosome recycling factors [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346981775|emb|CBW85748.1| Putative ribosome recycling factors [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 185
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A AL+R+L +R GRA+ +LD + V+ G P+N +A +SV +++ L I PYD
Sbjct: 13 MEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAPTPVNQMASISVPEARMLLITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+E AI+ S LGL P DG L +IP LT+E + + K V K +E+ K ++R R
Sbjct: 73 TILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A + +KK + +D ++ +++ +LT + +K+ D I K KE EI E
Sbjct: 133 REANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILE 184
>gi|390943287|ref|YP_006407048.1| ribosome recycling factor [Belliella baltica DSM 15883]
gi|390416715|gb|AFL84293.1| ribosome recycling factor [Belliella baltica DSM 15883]
Length = 186
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 101/171 (59%), Gaps = 5/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ ++EL K+R G+A P +LD I+V G PL +A V+ D++TLSI P++
Sbjct: 15 MQKAVDHTAQELVKIRAGKAMPNLLDGIMVNYYGAPTPLQQVASVTTPDARTLSIKPWER 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + E+E +IV+S LGL P+ +G+ +I IP LT+E + + K+ E K SIR R
Sbjct: 75 NLISEIERSIVNSDLGLAPQNNGEIIILTIPPLTEERRRGLVKMAKAECESGKVSIRTVR 134
Query: 121 QKALDMMKKA---GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ D +KK G+S +D++KR E + + T +Y DD+ KE EI
Sbjct: 135 KDTNDSLKKLQKDGAS--EDEIKRAEDTVQKFTDQYSTKVDDLLVKKEAEI 183
>gi|119487064|ref|ZP_01620936.1| ribosome releasing factor [Lyngbya sp. PCC 8106]
gi|119455993|gb|EAW37127.1| ribosome releasing factor [Lyngbya sp. PCC 8106]
Length = 182
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ + R +RTGRA+ +LD ++VE G L LA ++ DS T+ I P+D
Sbjct: 10 MQKAVESTQRSFNTIRTGRANTSLLDRVMVEYYGTPTSLKSLATINTPDSSTIMIQPFDR 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
TL +E AI S +GL P DG + IP LT E Q K+ +K +E+ K S+R R
Sbjct: 70 KTLDIIEKAISLSDVGLTPNNDGSIIRLNIPPLTSERRQEFVKLASKYAEEGKVSVRNVR 129
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K S L +D+ + L+ +I +LT KY D++ +AK+K+I
Sbjct: 130 RDAVDSVRKQEKSKDLSEDEARDLQDQIQKLTDKYTAKIDEMFEAKDKDI 179
>gi|16803354|ref|NP_464839.1| ribosome recycling factor [Listeria monocytogenes EGD-e]
gi|46907540|ref|YP_013929.1| ribosome recycling factor [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094294|ref|ZP_00231999.1| ribosome recycling factor [Listeria monocytogenes str. 4b H7858]
gi|47096939|ref|ZP_00234516.1| ribosome recycling factor [Listeria monocytogenes str. 1/2a F6854]
gi|226223915|ref|YP_002758022.1| ribosome recycling factor [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|254824627|ref|ZP_05229628.1| ribosome recycling factor [Listeria monocytogenes FSL J1-194]
gi|254828675|ref|ZP_05233362.1| ribosome recycling factor [Listeria monocytogenes FSL N3-165]
gi|254852635|ref|ZP_05241983.1| ribosome recycling factor [Listeria monocytogenes FSL R2-503]
gi|254911988|ref|ZP_05262000.1| ribosome recycling factor [Listeria monocytogenes J2818]
gi|254932371|ref|ZP_05265730.1| ribosome recycling factor [Listeria monocytogenes HPB2262]
gi|254936315|ref|ZP_05268012.1| ribosome recycling factor [Listeria monocytogenes F6900]
gi|254992874|ref|ZP_05275064.1| ribosome recycling factor [Listeria monocytogenes FSL J2-064]
gi|255026995|ref|ZP_05298981.1| ribosome recycling factor [Listeria monocytogenes FSL J2-003]
gi|255522289|ref|ZP_05389526.1| ribosome recycling factor [Listeria monocytogenes FSL J1-175]
gi|284801699|ref|YP_003413564.1| hypothetical protein LM5578_1453 [Listeria monocytogenes 08-5578]
gi|284994841|ref|YP_003416609.1| hypothetical protein LM5923_1406 [Listeria monocytogenes 08-5923]
gi|300765446|ref|ZP_07075428.1| ribosome recycling factor [Listeria monocytogenes FSL N1-017]
gi|386043625|ref|YP_005962430.1| ribosome recycling factor [Listeria monocytogenes 10403S]
gi|386046966|ref|YP_005965298.1| ribosome recycling factor [Listeria monocytogenes J0161]
gi|386050290|ref|YP_005968281.1| ribosome recycling factor [Listeria monocytogenes FSL R2-561]
gi|386053567|ref|YP_005971125.1| ribosome recycling factor [Listeria monocytogenes Finland 1998]
gi|386732052|ref|YP_006205548.1| ribosome recycling factor [Listeria monocytogenes 07PF0776]
gi|404280868|ref|YP_006681766.1| ribosome recycling factor [Listeria monocytogenes SLCC2755]
gi|404283805|ref|YP_006684702.1| ribosome recycling factor [Listeria monocytogenes SLCC2372]
gi|404286732|ref|YP_006693318.1| ribosome recycling factor [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|404410612|ref|YP_006696200.1| ribosome recycling factor [Listeria monocytogenes SLCC5850]
gi|404413390|ref|YP_006698977.1| ribosome recycling factor [Listeria monocytogenes SLCC7179]
gi|405749656|ref|YP_006673122.1| ribosome recycling factor [Listeria monocytogenes ATCC 19117]
gi|405752531|ref|YP_006675996.1| ribosome recycling factor [Listeria monocytogenes SLCC2378]
gi|405755443|ref|YP_006678907.1| ribosome recycling factor [Listeria monocytogenes SLCC2540]
gi|405758361|ref|YP_006687637.1| ribosome recycling factor [Listeria monocytogenes SLCC2479]
gi|406704085|ref|YP_006754439.1| ribosome recycling factor [Listeria monocytogenes L312]
gi|417313769|ref|ZP_12100476.1| ribosome recycling factor [Listeria monocytogenes J1816]
gi|417317467|ref|ZP_12104084.1| ribosome recycling factor [Listeria monocytogenes J1-220]
gi|424714188|ref|YP_007014903.1| Ribosome-recycling factor [Listeria monocytogenes serotype 4b str.
LL195]
gi|424823077|ref|ZP_18248090.1| Ribosome-recycling factor [Listeria monocytogenes str. Scott A]
gi|22001941|sp|Q8Y7G7.1|RRF_LISMO RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|60390258|sp|Q720A8.1|RRF_LISMF RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|259494548|sp|C1L2M0.1|RRF_LISMC RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|16410730|emb|CAC99392.1| frr [Listeria monocytogenes EGD-e]
gi|46880808|gb|AAT04106.1| ribosome recycling factor [Listeria monocytogenes serotype 4b str.
F2365]
gi|47014699|gb|EAL05655.1| ribosome recycling factor [Listeria monocytogenes str. 1/2a F6854]
gi|47017338|gb|EAL08166.1| ribosome recycling factor [Listeria monocytogenes str. 4b H7858]
gi|225876377|emb|CAS05086.1| Putative ribosome recycling factor [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|258601078|gb|EEW14403.1| ribosome recycling factor [Listeria monocytogenes FSL N3-165]
gi|258605951|gb|EEW18559.1| ribosome recycling factor [Listeria monocytogenes FSL R2-503]
gi|258608905|gb|EEW21513.1| ribosome recycling factor [Listeria monocytogenes F6900]
gi|284057261|gb|ADB68202.1| hypothetical protein LM5578_1453 [Listeria monocytogenes 08-5578]
gi|284060308|gb|ADB71247.1| hypothetical protein LM5923_1406 [Listeria monocytogenes 08-5923]
gi|293583927|gb|EFF95959.1| ribosome recycling factor [Listeria monocytogenes HPB2262]
gi|293589952|gb|EFF98286.1| ribosome recycling factor [Listeria monocytogenes J2818]
gi|293593865|gb|EFG01626.1| ribosome recycling factor [Listeria monocytogenes FSL J1-194]
gi|300513883|gb|EFK40948.1| ribosome recycling factor [Listeria monocytogenes FSL N1-017]
gi|328468599|gb|EGF39599.1| ribosome recycling factor [Listeria monocytogenes J1816]
gi|328475037|gb|EGF45825.1| ribosome recycling factor [Listeria monocytogenes J1-220]
gi|332311757|gb|EGJ24852.1| Ribosome-recycling factor [Listeria monocytogenes str. Scott A]
gi|345533957|gb|AEO03398.1| ribosome recycling factor [Listeria monocytogenes J0161]
gi|345536859|gb|AEO06299.1| ribosome recycling factor [Listeria monocytogenes 10403S]
gi|346424136|gb|AEO25661.1| ribosome recycling factor [Listeria monocytogenes FSL R2-561]
gi|346646218|gb|AEO38843.1| ribosome recycling factor [Listeria monocytogenes Finland 1998]
gi|384390810|gb|AFH79880.1| ribosome recycling factor [Listeria monocytogenes 07PF0776]
gi|404218856|emb|CBY70220.1| ribosome recycling factor [Listeria monocytogenes ATCC 19117]
gi|404221731|emb|CBY73094.1| ribosome recycling factor [Listeria monocytogenes SLCC2378]
gi|404224643|emb|CBY76005.1| ribosome recycling factor [Listeria monocytogenes SLCC2540]
gi|404227503|emb|CBY48908.1| ribosome recycling factor [Listeria monocytogenes SLCC2755]
gi|404230438|emb|CBY51842.1| ribosome recycling factor [Listeria monocytogenes SLCC5850]
gi|404233307|emb|CBY54710.1| ribosome recycling factor [Listeria monocytogenes SLCC2372]
gi|404236243|emb|CBY57645.1| ribosome recycling factor [Listeria monocytogenes SLCC2479]
gi|404239089|emb|CBY60490.1| ribosome recycling factor [Listeria monocytogenes SLCC7179]
gi|404245661|emb|CBY03886.1| ribosome recycling factor [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361115|emb|CBY67388.1| ribosome recycling factor [Listeria monocytogenes L312]
gi|424013372|emb|CCO63912.1| Ribosome-recycling factor [Listeria monocytogenes serotype 4b str.
LL195]
gi|441470985|emb|CCQ20740.1| Ribosome-recycling factor [Listeria monocytogenes]
gi|441474112|emb|CCQ23866.1| Ribosome-recycling factor [Listeria monocytogenes N53-1]
Length = 185
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A AL+R+L +R GRA+ +LD + V+ G P+N +A +SV +++ L I PYD
Sbjct: 13 MEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITPYDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L E+E AI+ S LGL P DG L +IP LT+E + + K V K +E+ K ++R R
Sbjct: 73 TILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A + +KK + +D ++ +++ +LT + +K+ D I K KE EI E
Sbjct: 133 REANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILE 184
>gi|344339489|ref|ZP_08770418.1| Ribosome-recycling factor [Thiocapsa marina 5811]
gi|343800793|gb|EGV18738.1| Ribosome-recycling factor [Thiocapsa marina 5811]
Length = 185
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M ++ ALS EL K+RTGRA P +LDH++V G +MP+ +A VS D++TL++ P++
Sbjct: 13 MAKSVEALSHELAKIRTGRAHPSLLDHVMVSYYGSEMPIRQVANVSAEDARTLAVTPWER 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N ++ +E AI+ S LGLNP G + +PALT+E + + KV +E + ++R R
Sbjct: 73 NMVQAVEKAIMQSDLGLNPNTAGTVIRVPMPALTEERRRDLIKVARNEAEQARVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A +K+ + +D+ +R ++ + +LT +Y+K D + KE ++
Sbjct: 133 RDANHDLKELVKDKMISEDEERRGQELVQKLTDQYIKDVDAVLAEKEADL 182
>gi|270290321|ref|ZP_06196546.1| ribosome recycling factor [Pediococcus acidilactici 7_4]
gi|418069074|ref|ZP_12706354.1| ribosome recycling factor [Pediococcus acidilactici MA18/5M]
gi|427439036|ref|ZP_18923778.1| ribosome recycling factor [Pediococcus lolii NGRI 0510Q]
gi|270281102|gb|EFA26935.1| ribosome recycling factor [Pediococcus acidilactici 7_4]
gi|357537807|gb|EHJ21830.1| ribosome recycling factor [Pediococcus acidilactici MA18/5M]
gi|425788414|dbj|GAC44566.1| ribosome recycling factor [Pediococcus lolii NGRI 0510Q]
Length = 186
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A AL R+L +R GRA+ +LD + V+ G PLN +A +S+ + + L I PYD
Sbjct: 14 MHKAHQALERDLGSIRAGRANASLLDRVTVDYYGAPTPLNQMASISIPEPRVLLITPYDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L ++E A++ + LG+NP DG + IP LT+E + + K V E K +IR R
Sbjct: 74 SVLNDIEQALLVADLGINPANDGSAIRLVIPQLTEETRKELAKDVKAEGEKGKVAIRNVR 133
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
++A++ +KKA D+ LEK+ ++T K +K ++I KEKE+ EG
Sbjct: 134 REAMEALKKAHKNGDYNDDEFHDLEKQAQDITDKAIKKVEEIVANKEKEVLEG 186
>gi|449444671|ref|XP_004140097.1| PREDICTED: ribosome-recycling factor, chloroplastic-like [Cucumis
sativus]
Length = 278
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME I + +RTGR++P MLD I VE G + L +A +S D+ +L + PYD
Sbjct: 106 MEKTIDTVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDK 165
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK +E AIV+S LG+ P DG+ + +P LT E + + KVVAK +E+ K ++R R
Sbjct: 166 SSLKSIEKAIVNSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 225
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ AL +K L +D +K L ++ +LT Y+K D + K KEKE+
Sbjct: 226 RDALKAYEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKEL 275
>gi|395242460|ref|ZP_10419457.1| Ribosome-recycling factor [Lactobacillus pasteurii CRBIP 24.76]
gi|394480192|emb|CCI85697.1| Ribosome-recycling factor [Lactobacillus pasteurii CRBIP 24.76]
Length = 187
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME +I R L +R G A+ G+L+ I V+ G PL ++ VS+ + + L I PYD
Sbjct: 14 MEKSIKVFQRNLASIRAGVANAGLLEGIQVDYYGAPTPLTQMSSVSIPEPRVLLITPYDI 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N+L +E A+++S LGL P DG+ + IP LT E Q + K V K +ED K ++R R
Sbjct: 74 NSLDNIEHALLASNLGLTPANDGKVIRLVIPQLTGERRQEIAKQVGKEAEDAKIAVRNVR 133
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
+ A++ +K K + +D+ + LEK++ ++T K D + K KEI +G
Sbjct: 134 RDAMNALKRLKNDDEITEDEQRNLEKQVQKVTDDATKKIDQLADEKRKEITQG 186
>gi|23010622|ref|ZP_00051247.1| COG0233: Ribosome recycling factor [Magnetospirillum
magnetotacticum MS-1]
Length = 187
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +LS++L LRTGRA+P +LD I VE G MP+ +A VSV + + LSI+ +D
Sbjct: 15 MQGAVSSLSKDLGSLRTGRATPSLLDPIQVEAYGASMPMAQVATVSVPEPRLLSISVWDR 74
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI S LGLNP +GQ + IP + ++ + M KV K +E+ + ++R R
Sbjct: 75 SMVTNVEKAIRESDLGLNPMTEGQTIRLRIPEMNEQRRKEMVKVAHKYAEEARVAVRHVR 134
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD++KK ++ +D KR ++ + T + D + +KEKEI
Sbjct: 135 RDGLDILKKLEKDGAISEDDEKRQAGDVQKATDDAIAEIDGVLASKEKEI 184
>gi|427390300|ref|ZP_18884706.1| ribosome recycling factor [Actinobaculum massiliae ACS-171-V-Col2]
gi|425733315|gb|EKU96121.1| ribosome recycling factor [Actinobaculum massiliae ACS-171-V-Col2]
Length = 185
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I E +R+GRAS G+ + I+V+ G PL LA + + + +T+ I P+DP
Sbjct: 13 MQKTIDFTREEFGHIRSGRASAGLFNPILVDYYGTPTPLQQLATIVIPEPRTVMITPFDP 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++ A+ S LG+NP DG L +PALT+E Q K+ +E+ + S+R R
Sbjct: 73 SAKANIDKALRESDLGVNPSDDGNVLRINLPALTQERRQEYVKLARARAEEGRVSLRGVR 132
Query: 121 QKALDM---MKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA+D M+K G + +D+++R E++++ LTKK+V D++ +AKEK++ E
Sbjct: 133 RKAMDSLEKMQKDGDA-GEDEVRRAEEQVETLTKKFVTDIDNLLQAKEKDLME 184
>gi|258645593|ref|ZP_05733062.1| ribosome recycling factor [Dialister invisus DSM 15470]
gi|260402951|gb|EEW96498.1| ribosome recycling factor [Dialister invisus DSM 15470]
Length = 185
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I AL E T +RTG+ASP +LD + V+ G K P+ +A V+V +++ L + P+D
Sbjct: 13 MDKSIQALRNEFTSIRTGQASPSLLDRVFVDYYGSKTPVTQVASVTVPEARMLVVQPWDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
LK++E AI S LGL P DG + AIP LT++ + + KVV K +E+ K +IR R
Sbjct: 73 GILKDIEKAINMSDLGLVPMNDGNLIRMAIPQLTEQRRKDLVKVVNKKAEEAKVAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ +KK S + KD +K +E +I +LT + +K + + K KEI
Sbjct: 133 RDGNVFLKKEEKNSDISKDVIKDMEDKIQKLTDQKIKDLEAVTDKKVKEI 182
>gi|254467840|ref|ZP_05081246.1| ribosome recycling factor [beta proteobacterium KB13]
gi|207086650|gb|EDZ63933.1| ribosome recycling factor [beta proteobacterium KB13]
Length = 180
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME I L + +K+RTGRA G+LDH+ V+ G PL+ +A V++ D+ T+++ PYD
Sbjct: 8 MEKTIERLKNDFSKIRTGRAHTGLLDHLSVDYYGTITPLSQMANVTLGDNVTINVQPYDK 67
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+E I S LGLNP V+G + +P LT+E + + KVV E+ K SIR R
Sbjct: 68 TQTSAIEKVIRDSDLGLNPAVNGDLIRVPMPPLTEERRKDLIKVVKSEGENAKISIRNIR 127
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ D +KK + +D KR + +I LT +++KS D++ +KEK++ E
Sbjct: 128 RDGNDELKKQLKEKLISEDDEKRDQAKIQTLTDEFIKSIDNLITSKEKDLLE 179
>gi|408401175|ref|YP_006859138.1| ribosome releasing factor [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|407967403|dbj|BAM60641.1| ribosome releasing factor [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 185
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+LSRE +R GRA+ +LD I V+ G PLN LA ++V +++ L I+P+D +++K++
Sbjct: 19 SLSREYASIRAGRANASLLDRIQVDYYGALTPLNQLASITVPEARVLLISPFDKSSIKDI 78
Query: 67 ECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E A+ +S LG+ P DG + IPALT+E + + K V K E+ K +IR R+ A+D
Sbjct: 79 ERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDD 138
Query: 127 MKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
KK + +D++K LEK+I + T +K D + KEKE+
Sbjct: 139 AKKQEKAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKEL 182
>gi|167041121|gb|ABZ05881.1| putative Ribosome recycling factor [uncultured marine microorganism
HF4000_001A02]
Length = 185
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ EL K+RTGRA+P +L+ I VE G MP+N ++ VS+ D + +++ P++
Sbjct: 13 MDQAVAHTRMELAKVRTGRANPDLLNAIQVEYYGSMMPMNQVSTVSIPDPRLITLQPFEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI++S LGL P +G ++ IPAL++E + + K V + E+ + S+R R
Sbjct: 73 SLIPVIEKAIMNSNLGLTPSNNGNAVLIPIPALSEERRKDLIKYVHQVVEEGRVSVRNVR 132
Query: 121 QKALDMMKKAG--SSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ AL +K+ G + +D++ R E E+ LT K+V+S +++ + KEKE+
Sbjct: 133 RDALHHVKEFGKEEHVSEDEIHRQETEMQTLTDKHVESLNEMQEHKEKEL 182
>gi|166365795|ref|YP_001658068.1| ribosome recycling factor [Microcystis aeruginosa NIES-843]
gi|425466445|ref|ZP_18845743.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9809]
gi|189044061|sp|B0JKT7.1|RRF_MICAN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|166088168|dbj|BAG02876.1| ribosome releasing factor [Microcystis aeruginosa NIES-843]
gi|389831005|emb|CCI26571.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 9809]
Length = 182
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + + R +RTGRA+ +LD I+VE G++ PL LA +S D+ T++I P+D
Sbjct: 10 MQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAIQPFDR 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ +E AI S +GL P DGQ + IP LT + + + K+ AK +E+ K +IR R
Sbjct: 70 TSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLAEEGKVAIRNIR 129
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K G + +D+ + L+ ++ + T K++ +D+ KEK+I
Sbjct: 130 RDAIDAIRKREKGHEISEDESRDLQDQVQKSTDKFIAKIEDLLTTKEKDI 179
>gi|383791171|ref|YP_005475745.1| ribosome recycling factor [Spirochaeta africana DSM 8902]
gi|383107705|gb|AFG38038.1| ribosome recycling factor [Spirochaeta africana DSM 8902]
Length = 182
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I AL E +RTGRAS + D I+VE G PLN +A VS +++ + I P+D
Sbjct: 10 MKKSIKALEEEFAAIRTGRASTALFDKIMVEYYGTPTPLNQVATVSTPEARLVVIQPWDK 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L ++E AI S L LNP DG+ + IP LT++ + + K + +E K +IR R
Sbjct: 70 SALGDIEKAIQKSELSLNPNNDGKVIRINIPPLTEDRRKEIVKSAKQIAEQAKVAIRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A D +K+ + +D+ KRL+ ++ +LT Y K + AKEKEI E
Sbjct: 130 RDANDQLKQQQKDGEISEDEEKRLQDDVQKLTDTYTKQISQMLDAKEKEILE 181
>gi|116492646|ref|YP_804381.1| ribosome recycling factor [Pediococcus pentosaceus ATCC 25745]
gi|421894425|ref|ZP_16324914.1| ribosome recycling factor [Pediococcus pentosaceus IE-3]
gi|122265890|sp|Q03FT3.1|RRF_PEDPA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|116102796|gb|ABJ67939.1| ribosome recycling factor [Pediococcus pentosaceus ATCC 25745]
gi|385272729|emb|CCG90286.1| ribosome recycling factor [Pediococcus pentosaceus IE-3]
Length = 186
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 2/173 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A L R+L +R GRA+ +LD + V+ G PLN +A +++ + + L + PYD
Sbjct: 14 MQKAQNVLERDLGSIRAGRANASLLDKVSVDYYGAPTPLNQMASITIPEPRVLLVTPYDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L ++E AI+ S LG+NP DG + +P LT+E + + K V E K ++R R
Sbjct: 74 SVLNDIEQAILMSDLGINPANDGSAIRLVVPQLTEETRKDLAKNVKAEGEKAKVAVRNIR 133
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINEG 171
+ A+D +KKA + D+ LEK+ + T K +K D+I KEKE+ EG
Sbjct: 134 RDAMDTLKKANKNGDYNDDEFHDLEKQTQDSTDKAIKVVDEIVANKEKEVLEG 186
>gi|402773702|ref|YP_006593239.1| ribosome-recycling factor (RRF) [Methylocystis sp. SC2]
gi|401775722|emb|CCJ08588.1| Ribosome-recycling factor (RRF) [Methylocystis sp. SC2]
Length = 186
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ L E LRTGRAS +LD I VE G PLN +A VSV + + LS+ +D
Sbjct: 14 MQGAVATLKHEFGGLRTGRASTSLLDPIHVEAYGQVSPLNQVATVSVPEPRLLSVQVWDK 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++ AI + LGL P V+GQ L +P L ++ + + KV K +E+ + S+R R
Sbjct: 74 ALVIAVDKAIREANLGLQPTVEGQNLRIRMPELNEQRRKELVKVAHKYAEEARVSVRHVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ LD++KK ++P+D KR E+E+ + T + VK D AKEKEI
Sbjct: 134 RDGLDILKKLLKDHAIPEDDEKRHEQEVQKATDETVKEIDAALAAKEKEI 183
>gi|407961473|dbj|BAM54713.1| ribosome recycling factor [Synechocystis sp. PCC 6803]
Length = 186
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ A R +RTGRA+ +LD I VE G + PL LA + D+ T+ I P+D
Sbjct: 14 MQKSVEATQRSFNTIRTGRANASLLDRITVEYYGAETPLKSLATIGTPDASTIVIQPFDM 73
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ +E AI S LGL P DG+ + IP LT E + + KV K +E+ K +IR R
Sbjct: 74 GSIGTIEKAISLSDLGLTPNNDGKVIRLNIPPLTAERRKELVKVAGKLAEEGKVAIRNIR 133
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K S + +D+ + L++EI +LT + K D++ AKEK+I
Sbjct: 134 RDAVDEVRKQEKNSDISEDEARDLQEEIQKLTDQSTKRIDELLAAKEKDI 183
>gi|325267098|ref|ZP_08133767.1| ribosome recycling factor [Kingella denitrificans ATCC 33394]
gi|324981451|gb|EGC17094.1| ribosome recycling factor [Kingella denitrificans ATCC 33394]
Length = 185
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ L L K+RTGRA G+LD + VE G ++P++ + V++LD++T+ + P++
Sbjct: 13 MQRSLEVLRENLAKVRTGRAHTGLLDQVTVEYWGSEVPVSQVGNVTLLDARTIGVKPFES 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N ++E AI S LGLNP G + +P LT+E + + KVV +ED + SIR R
Sbjct: 73 NMAAKIEKAIRDSNLGLNPSSVGDLIRVPMPMLTEERRKDLIKVVRGEAEDGRVSIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK + +D+ +R E+ + +LT KY+ D + AKE+++
Sbjct: 133 RDANDHVKKLLKDKEISEDEARRAEESVQKLTDKYIADVDKMLAAKEEDL 182
>gi|7404451|sp|P37706.2|RRFC_DAUCA RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF;
AltName: Full=Nuclear located protein D2; AltName:
Full=Ribosome-releasing factor, chloroplastic; Flags:
Precursor
Length = 227
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 101/171 (59%), Gaps = 4/171 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME I + +RT R++P MLD I VE G L +A +S DS +L +NPYD
Sbjct: 55 MEKTIENVKASFNSIRTXRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDK 114
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
++LK++E AIV+S LG+ P DG + +IP LT + + + K+VAK +E+ K ++IR
Sbjct: 115 SSLKDIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALRNIR 174
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
R K+ D ++K L +D +K L ++ ++ +Y+K D I K KEKE+
Sbjct: 175 RDAIKSYDKLEKE-KKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQKEKEL 224
>gi|16331151|ref|NP_441879.1| ribosome recycling factor [Synechocystis sp. PCC 6803]
gi|383322894|ref|YP_005383747.1| ribosome releasing factor [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383326063|ref|YP_005386916.1| ribosome releasing factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491947|ref|YP_005409623.1| ribosome releasing factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437215|ref|YP_005651939.1| ribosome releasing factor [Synechocystis sp. PCC 6803]
gi|451815308|ref|YP_007451760.1| ribosome releasing factor [Synechocystis sp. PCC 6803]
gi|3122780|sp|P74456.1|RRF_SYNY3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|1653645|dbj|BAA18557.1| ribosome releasing factor [Synechocystis sp. PCC 6803]
gi|339274247|dbj|BAK50734.1| ribosome releasing factor [Synechocystis sp. PCC 6803]
gi|359272213|dbj|BAL29732.1| ribosome releasing factor [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359275383|dbj|BAL32901.1| ribosome releasing factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278553|dbj|BAL36070.1| ribosome releasing factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781277|gb|AGF52246.1| ribosome releasing factor [Synechocystis sp. PCC 6803]
Length = 182
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ A R +RTGRA+ +LD I VE G + PL LA + D+ T+ I P+D
Sbjct: 10 MQKSVEATQRSFNTIRTGRANASLLDRITVEYYGAETPLKSLATIGTPDASTIVIQPFDM 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ +E AI S LGL P DG+ + IP LT E + + KV K +E+ K +IR R
Sbjct: 70 GSIGTIEKAISLSDLGLTPNNDGKVIRLNIPPLTAERRKELVKVAGKLAEEGKVAIRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K S + +D+ + L++EI +LT + K D++ AKEK+I
Sbjct: 130 RDAVDEVRKQEKNSDISEDEARDLQEEIQKLTDQSTKRIDELLAAKEKDI 179
>gi|260060696|ref|YP_003193776.1| ribosome recycling factor [Robiginitalea biformata HTCC2501]
gi|88784826|gb|EAR15995.1| ribosome recycling factor [Robiginitalea biformata HTCC2501]
Length = 184
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 98/168 (58%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L +EL K+R GRASP ML ++V+ G + PLN ++ V+ D++T+S+ P++
Sbjct: 16 MDNAISHLEKELVKIRAGRASPSMLSSVMVDYYGSQTPLNQMSNVNTPDARTISVQPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI ++ LG NP +G+ +I +P LT+E + + K +E+ K SIR +R
Sbjct: 76 AMIPNIETAITNANLGFNPMNNGEMVIINVPPLTEERRKQLVKQAKAEAEEAKVSIRAAR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q A +K + +D + E +I ELT Y + D I + KE EI
Sbjct: 136 QDANKEIK--ALDISEDLEQNAEIDIQELTDTYTERVDGILEHKEAEI 181
>gi|452995278|emb|CCQ93045.1| ribosome recycling factor [Clostridium ultunense Esp]
Length = 185
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + EL +R GRA+P +LD I ++ G PL LA +S + + L I P+D
Sbjct: 13 MKKTVEVYKEELKSIRAGRANPALLDQISIDYYGTDTPLKQLASISAPEPRLLIIQPWDI 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + +E I+ S LGLNP DG+ + IP LT+E + + KVV K++E K SIR R
Sbjct: 73 NLISVIEKEILKSDLGLNPSNDGKLIRLPIPLLTEERRKELVKVVRKSAESAKISIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++A D++KK +L +D K E E ++T +Y+ DD+ KE+E+ E
Sbjct: 133 REANDIIKKMEKDKTLSEDDRKAAENETQKITDEYIDEIDDLTNKKEEELLE 184
>gi|37519857|ref|NP_923234.1| ribosome recycling factor [Gloeobacter violaceus PCC 7421]
gi|39932053|sp|Q7NNX0.1|RRF_GLOVI RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
Full=Ribosome-releasing factor
gi|35210848|dbj|BAC88229.1| ribosome releasing factor [Gloeobacter violaceus PCC 7421]
Length = 182
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI A + +RTGRAS +LD I VE G PL LA ++ D+ T+ I PYDP
Sbjct: 10 MRKAIEATAGNFATIRTGRASTSLLDRINVEYYGQPTPLKTLATITTPDASTVLIQPYDP 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L+ +E I+ S LGL P DG+ + IP LT E + + KV+ +E+ + ++R R
Sbjct: 70 SSLRLIEKTILESDLGLPPSNDGKTIRLNIPPLTAERRKDLVKVLRNLAEEGRVAVRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K + + +D+ +RL+ E+ +LT K ++ + + +AKEKEI
Sbjct: 130 RHAIDEVRKEEKDAKVSEDEARRLQDEVQKLTDKSIQQIEKLFEAKEKEI 179
>gi|228473766|ref|ZP_04058511.1| ribosome recycling factor [Capnocytophaga gingivalis ATCC 33624]
gi|228274787|gb|EEK13610.1| ribosome recycling factor [Capnocytophaga gingivalis ATCC 33624]
Length = 184
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 100/168 (59%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ L + L +R G+ASP ML + V+ G + PL+ +A V+ DS+T+SI P++
Sbjct: 16 MQGSLNHLEKSLLNIRAGKASPQMLGSVYVDYYGSQTPLSQVANVNTPDSRTISIQPWEK 75
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L +E AI+ + LG NP +G+ +I ++P LT+E + + K SE+ K +R +R
Sbjct: 76 NMLSTIEKAIMVANLGFNPMNNGETIIISVPPLTEERRKELVKQAKGESEEAKIGVRNAR 135
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
Q+A +KK +S D K E+ + +LT KY+K D++ KE EI
Sbjct: 136 QEANKDIKKTEAS--DDVKKDAEERVQKLTDKYIKQIDEVLAKKEAEI 181
>gi|392531186|ref|ZP_10278323.1| ribosome recycling factor [Carnobacterium maltaromaticum ATCC
35586]
gi|414084080|ref|YP_006992788.1| ribosome recycling factor [Carnobacterium maltaromaticum LMA28]
gi|412997664|emb|CCO11473.1| ribosome recycling factor [Carnobacterium maltaromaticum LMA28]
Length = 185
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A AL REL +R GRA+ +LD I VE G PLN LA +++ +++ L ++P+D
Sbjct: 13 MTKAEQALQRELGSIRAGRANASILDRIQVEYYGAPTPLNQLASITIPEARVLMVSPFDK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+L+++E A++ S +G+ P DG + IP LT+E + + K V K +E+ K ++R R
Sbjct: 73 TSLQDIERALMQSDVGITPTNDGNVIRLVIPMLTEERRKELAKRVKKEAENSKVTVRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ +D +KKA + +D+++ E E +LT VK+ D I KEKE+ E
Sbjct: 133 RDLIDELKKAEKNKEMTEDELRNYETEAQKLTDDSVKNLDKIAADKEKELLE 184
>gi|347542454|ref|YP_004857091.1| ribosome recycling factor [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346985490|dbj|BAK81165.1| ribosome recycling factor [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 185
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I L +L +R GRA+P MLD I VE G +N +A +S + +TL I P++
Sbjct: 13 MLKTIDVLLEDLNSVRVGRANPSMLDRIEVEYYGSMTKINQIANISTPEPRTLMIQPWEK 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LK++E AI+ S LGL P DG + IP +T+E + K V K +E+ K ++R R
Sbjct: 73 NILKDIEKAILKSDLGLMPNNDGTLIRLTIPEMTEETRKNTAKKVKKIAEESKVALRSLR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +K K SS+ +D +K+ E EI + T K+VK D+I KEKEI
Sbjct: 133 RDANDKVKSLKKESSITEDDLKKAEDEIQKQTDKFVKKIDEIVVNKEKEI 182
>gi|332799211|ref|YP_004460710.1| Ribosome-recycling factor [Tepidanaerobacter acetatoxydans Re1]
gi|438002335|ref|YP_007272078.1| Ribosome recycling factor [Tepidanaerobacter acetatoxydans Re1]
gi|332696946|gb|AEE91403.1| Ribosome-recycling factor [Tepidanaerobacter acetatoxydans Re1]
gi|432179129|emb|CCP26102.1| Ribosome recycling factor [Tepidanaerobacter acetatoxydans Re1]
Length = 185
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 98/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +V L E T +R GRAS +LD I V+ G P+N +A VSV + K + I P+D
Sbjct: 13 MNEVLVNLKSEFTTIRAGRASAALLDKIYVDYYGSPTPVNQVASVSVPEPKMILIQPWDL 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI+ S LGL P DG+ + +P LT E Q + K+ K +E+ K SIR R
Sbjct: 73 KMLGVIEKAILKSDLGLTPNNDGKVIRLILPELTAERRQELVKLSKKKAEEAKVSIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
++ D++KK + +D +KR ++EI ++T KY+ + I KEK+I E
Sbjct: 133 REYNDVLKKMEKNREISEDDLKRSQEEIQKITDKYIDEVEKILANKEKDIME 184
>gi|296127609|ref|YP_003634861.1| ribosome recycling factor [Brachyspira murdochii DSM 12563]
gi|296019425|gb|ADG72662.1| ribosome recycling factor [Brachyspira murdochii DSM 12563]
Length = 182
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 96/171 (56%), Gaps = 2/171 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI +L +L +RTGRA+ +LD + VE G MPL + VS DS+T+ I P+D
Sbjct: 10 MEKAISSLQNDLKGIRTGRANASILDGVKVEAYGSNMPLKQVGNVSTPDSRTIMIQPFDK 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI+ + LG NP DG + +P LTKE + + K V E+ K ++R R
Sbjct: 70 GLVSDIEKAILKADLGFNPFNDGGNIRIVVPELTKERREELKKGVRHRGEEAKIAVRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEIN 169
+ D +KK ++ +D+ K EK I T Y+K D++ KEKE++
Sbjct: 130 RDENDKIKKELKDKTITEDESKSQEKRIQNETDAYIKKIDEMINTKEKELD 180
>gi|425449975|ref|ZP_18829807.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 7941]
gi|389769386|emb|CCI05755.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF)
[Microcystis aeruginosa PCC 7941]
Length = 182
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + + R +RTGRA+ +LD I+VE G++ PL LA +S D+ T++I P+D
Sbjct: 10 MQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAIQPFDR 69
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++ +E AI S +GL P DGQ + IP LT + + + K+ AK SE+ K +IR R
Sbjct: 70 SSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLSEEGKVAIRNIR 129
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A+D ++K S + +D+ + L+ ++ + T K++ +D+ KEK+I
Sbjct: 130 RDAIDAIRKQEKSHEISEDESRDLQDQVQKSTDKFIAKIEDLLTTKEKDI 179
>gi|359768025|ref|ZP_09271805.1| ribosome-recycling factor [Gordonia polyisoprenivorans NBRC 16320]
gi|378717527|ref|YP_005282416.1| ribosome-recycling factor Frr [Gordonia polyisoprenivorans VH2]
gi|359314602|dbj|GAB24638.1| ribosome-recycling factor [Gordonia polyisoprenivorans NBRC 16320]
gi|375752230|gb|AFA73050.1| ribosome-recycling factor Frr [Gordonia polyisoprenivorans VH2]
Length = 185
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ ++ +RTGRA+P M + +++E G P+ +A ++ + + + I PY+
Sbjct: 13 MEKAVNVAREDMGSIRTGRANPAMFNKVVIEYYGAMTPITQVASINTPEPRLVVIKPYEA 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TL+++E AI +S LG+NP DG + A+P LT+E + + K ED K SIR R
Sbjct: 73 STLRDIETAIRNSDLGVNPTNDGTLIRVAVPQLTEERRKDLVKQAKGKGEDAKVSIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+KA++ +K+ +D + R EK++D+ T YV D++ K KE E+ E
Sbjct: 133 RKAVEELKRIQKDGEAGEDDVVRAEKDLDKTTAGYVAQVDELVKHKESELLE 184
>gi|357633491|ref|ZP_09131369.1| ribosome recycling factor [Desulfovibrio sp. FW1012B]
gi|357582045|gb|EHJ47378.1| ribosome recycling factor [Desulfovibrio sp. FW1012B]
Length = 184
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ L +E +LRTGRA+ +LD + VE G PL +A VS DS+T++I P+D
Sbjct: 12 MKKALSVLDKEFARLRTGRATTSLLDGVRVEYYGSVTPLEQIASVSTPDSRTITIQPWDR 71
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++E AI+ S LGL P DG+ + +IP LT++ + + KV K +E+ K +IR R
Sbjct: 72 KAFNDVERAILKSDLGLTPVNDGKIIRISIPPLTEDRRKDLAKVAKKYAEEAKVAIRNVR 131
Query: 121 QKALDMMKKAGS--SLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEINE 170
+ A + +KK + ++ +D + ++++ +LT Y+ D+ KEKEI E
Sbjct: 132 RDANEALKKKKNDKAISEDDQHKGQEDVQKLTDGYIAKTDEAFSKKEKEIME 183
>gi|261378087|ref|ZP_05982660.1| ribosome recycling factor [Neisseria cinerea ATCC 14685]
gi|269145536|gb|EEZ71954.1| ribosome recycling factor [Neisseria cinerea ATCC 14685]
Length = 185
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ L L K+RTGRA G+LD + VE G +P++ +A V++LD++T+ + P++
Sbjct: 13 MQRSVEVLKENLAKVRTGRAHTGLLDQVEVEYWGSMVPVSQVANVTLLDARTIGVKPFES 72
Query: 61 NTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N ++E AI S LGLNP G + +P LT+E + + KVV +E+ + SIR R
Sbjct: 73 NMAAKVEKAIRDSNLGLNPAAVGDLIRVPMPMLTEERRKDLIKVVRSEAEEGRVSIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168
+ A D +KK + +D+ +R E+ + +LT KY+ AD + AKE+++
Sbjct: 133 RDANDHIKKLLKDKEISEDEARRGEEAVQKLTDKYITEADKLLTAKEEDL 182
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.129 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,455,356,029
Number of Sequences: 23463169
Number of extensions: 93697407
Number of successful extensions: 384574
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3341
Number of HSP's successfully gapped in prelim test: 249
Number of HSP's that attempted gapping in prelim test: 378487
Number of HSP's gapped (non-prelim): 3922
length of query: 171
length of database: 8,064,228,071
effective HSP length: 131
effective length of query: 40
effective length of database: 9,285,520,228
effective search space: 371420809120
effective search space used: 371420809120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 71 (32.0 bits)