Query 030790
Match_columns 171
No_of_seqs 107 out of 1029
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:52:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dd5_A Ribosome recycling fact 100.0 4.6E-65 1.6E-69 402.6 21.1 170 1-170 13-184 (185)
2 1ise_A Ribosome recycling fact 100.0 5.2E-65 1.8E-69 402.3 20.1 170 1-170 13-184 (185)
3 1is1_A Ribosome recycling fact 100.0 6.1E-65 2.1E-69 402.1 20.4 170 1-170 13-184 (185)
4 1wqg_A Ribosome recycling fact 100.0 5.9E-65 2E-69 402.2 20.0 170 1-170 13-184 (185)
5 4gfq_A Ribosome-recycling fact 100.0 1.1E-64 3.9E-69 405.8 19.0 170 1-170 37-208 (209)
6 1eh1_A Ribosome recycling fact 100.0 6.4E-65 2.2E-69 401.8 17.0 170 1-170 14-185 (185)
7 1ge9_A Ribosome recycling fact 100.0 2.7E-64 9.1E-69 397.9 19.9 168 1-170 16-183 (184)
8 1wih_A Mitochondrial ribosome 100.0 5.5E-36 1.9E-40 208.6 4.4 82 18-99 1-83 (84)
9 3lhp_S 4E10_D0_1ISEA_004_N (T9 100.0 2.2E-29 7.4E-34 185.2 8.4 89 81-171 33-123 (123)
10 3lf9_A 4E10_D0_1IS1A_001_C (T1 100.0 8.9E-28 3E-32 175.4 13.6 80 91-170 31-112 (121)
11 3onj_A T-snare VTI1; helix, HA 87.6 2.3 7.8E-05 29.2 6.9 57 90-151 24-94 (97)
12 4hhu_A OR280; engineered prote 81.6 5.1 0.00017 29.2 6.6 66 48-113 79-151 (170)
13 2kl8_A OR15; structural genomi 79.7 2.9 9.9E-05 27.2 4.3 35 78-112 34-68 (85)
14 4e81_A Chaperone protein DNAK; 75.0 27 0.00092 27.1 9.7 77 92-168 118-203 (219)
15 4hhu_A OR280; engineered prote 74.6 7.5 0.00026 28.3 5.8 61 54-114 4-71 (170)
16 3lay_A Zinc resistance-associa 73.9 27 0.00092 26.5 11.2 73 92-166 67-142 (175)
17 3fxb_A Trap dicarboxylate tran 71.3 35 0.0012 27.7 10.0 67 92-158 236-307 (326)
18 1l6x_B Minimized B-domain of p 70.5 2.7 9.2E-05 23.6 2.0 20 88-107 13-32 (34)
19 3tuf_A Stage III sporulation p 68.6 31 0.0011 26.8 8.5 59 106-164 82-144 (197)
20 2pfy_A Putative exported prote 63.7 53 0.0018 26.0 9.9 66 92-157 220-288 (301)
21 3u65_B TP33 protein; tetratric 63.6 39 0.0013 27.5 8.7 66 91-156 238-306 (328)
22 2fqm_A Phosphoprotein, P prote 62.3 14 0.00048 24.0 4.5 32 82-113 16-48 (75)
23 1vcs_A Vesicle transport throu 62.0 14 0.00047 25.4 4.9 31 91-121 29-59 (102)
24 2pfz_A Putative exported prote 58.0 68 0.0023 25.4 11.4 66 92-157 219-287 (301)
25 4b9q_A Chaperone protein DNAK; 52.2 74 0.0025 28.2 9.1 62 91-152 505-575 (605)
26 3m20_A 4-oxalocrotonate tautom 51.5 32 0.0011 20.7 4.9 27 85-111 2-28 (62)
27 1u00_A HSC66, chaperone protei 50.2 85 0.0029 24.2 8.7 60 91-150 114-182 (227)
28 2vpn_A Periplasmic substrate b 49.0 95 0.0033 24.7 8.7 65 92-156 222-291 (316)
29 1zda_A Mini protein A domain, 48.9 4.1 0.00014 23.4 0.2 19 88-106 18-36 (38)
30 2hzl_A Trap-T family sorbitol/ 48.3 1.1E+02 0.0037 24.8 10.6 64 93-156 257-323 (365)
31 1ixm_A SPO0B, protein (sporula 47.2 12 0.00042 28.5 2.8 65 92-158 3-67 (192)
32 1ud0_A HSC70, 70 kDa heat-shoc 46.8 64 0.0022 21.7 7.0 39 113-151 6-46 (113)
33 2p32_A Heat shock 70 kDa prote 46.0 70 0.0024 22.0 6.8 20 132-151 41-60 (120)
34 3lof_A Heat shock 70 kDa prote 44.5 71 0.0024 21.6 7.8 42 110-151 8-51 (113)
35 2xwv_A Sialic acid-binding per 43.2 83 0.0029 25.1 7.5 69 90-158 223-291 (312)
36 2jhe_A Transcription regulator 42.4 69 0.0024 22.5 6.3 57 52-109 2-62 (190)
37 2kho_A Heat shock protein 70; 42.3 1.1E+02 0.0036 27.1 8.6 61 91-151 505-574 (605)
38 3hd7_A Vesicle-associated memb 40.6 65 0.0022 21.4 5.4 30 135-164 3-32 (91)
39 2hpg_A ABC transporter, peripl 39.3 99 0.0034 24.9 7.4 64 92-155 240-307 (327)
40 1usp_A Organic hydroperoxide r 36.6 33 0.0011 24.2 3.6 26 85-110 97-122 (139)
41 1in0_A YAJQ protein, HI1034; a 35.6 9.7 0.00033 28.8 0.5 32 59-90 103-134 (163)
42 2j69_A Bacterial dynamin-like 34.0 1.1E+02 0.0039 27.5 7.5 68 97-167 589-656 (695)
43 1gmj_A ATPase inhibitor; coile 34.0 1.1E+02 0.0036 20.5 8.3 45 99-148 25-69 (84)
44 2bjo_A Organic hydroperoxide r 33.6 39 0.0013 23.7 3.5 26 85-110 95-120 (136)
45 2zzv_A ABC transporter, solute 33.5 1.9E+02 0.0065 23.3 9.8 63 93-155 264-329 (361)
46 1qwi_A OSMC, osmotically induc 33.3 41 0.0014 23.8 3.6 24 86-109 102-125 (143)
47 1n2f_A Organic hydroperoxide r 33.0 40 0.0014 23.9 3.5 26 85-110 100-125 (142)
48 2ql8_A Putative redox protein; 32.4 35 0.0012 24.2 3.1 25 86-110 98-122 (143)
49 2l5g_B Putative uncharacterize 31.0 81 0.0028 18.3 4.9 35 133-168 1-35 (42)
50 3qwo_C Motavizumab epitope sca 30.8 28 0.00097 21.6 2.0 26 88-113 14-39 (57)
51 1zb9_A OHR, organic hydroperox 29.7 49 0.0017 23.4 3.6 25 86-110 102-126 (143)
52 3mc6_A Sphingosine-1-phosphate 28.8 46 0.0016 27.9 3.7 52 62-113 387-438 (497)
53 1j1d_C Troponin I, TNI; THIN f 28.3 1.7E+02 0.0057 21.1 10.3 50 92-141 10-65 (133)
54 1nye_A Osmotically inducible p 27.9 56 0.0019 23.9 3.6 24 86-109 121-144 (162)
55 1x4t_A Hypothetical protein LO 27.9 1.4E+02 0.0049 20.2 5.9 42 108-152 25-67 (92)
56 1j1e_C Troponin I, TNI; THIN f 27.6 2E+02 0.0069 21.8 11.1 50 92-141 10-65 (180)
57 3m21_A Probable tautomerase HP 27.5 1E+02 0.0036 18.5 4.5 27 85-111 2-32 (67)
58 2hbp_A Cytoskeleton assembly c 27.2 13 0.00045 24.0 0.0 26 81-106 34-59 (68)
59 3ez1_A Aminotransferase MOCR f 26.6 2.4E+02 0.0082 22.5 7.7 51 62-112 356-415 (423)
60 2o8p_A 14-3-3 domain containin 25.7 1.4E+02 0.0046 23.6 5.7 31 91-121 41-71 (227)
61 3d2f_A Heat shock protein homo 25.6 3.6E+02 0.012 24.1 9.8 62 90-151 521-592 (675)
62 3iqu_A 14-3-3 protein sigma; s 25.6 2.5E+02 0.0084 22.1 8.2 71 91-161 39-112 (236)
63 2npm_A 14-3-3 domain containin 24.7 2.7E+02 0.0091 22.2 7.6 70 90-161 61-135 (260)
64 1xw3_A Sulfiredoxin; retroredu 24.0 23 0.00078 24.9 0.8 59 37-106 17-82 (110)
65 2dkj_A Serine hydroxymethyltra 23.9 1.6E+02 0.0053 23.4 6.0 50 62-111 324-387 (407)
66 1o9d_A 14-3-3-like protein C; 23.8 2.8E+02 0.0095 22.1 7.7 70 90-161 40-114 (260)
67 2br9_A 14-3-3E, 14-3-3 protein 23.7 2.6E+02 0.0091 21.8 8.1 70 91-161 36-109 (234)
68 2qdq_A Talin-1; dimerisation d 23.7 1.3E+02 0.0044 18.1 4.3 25 97-122 13-37 (50)
69 1ukk_A Osmotically inducible p 23.2 38 0.0013 24.0 1.9 24 86-109 100-123 (142)
70 1zpv_A ACT domain protein; str 22.9 1.1E+02 0.0039 19.1 4.1 58 52-111 7-72 (91)
71 1lxj_A YBL001C, hypothetical 1 22.6 98 0.0034 21.1 3.9 38 53-90 10-53 (104)
72 3ff5_A PEX14P, peroxisomal bio 21.4 1.5E+02 0.0051 18.1 5.3 47 91-142 2-50 (54)
73 3g3z_A NMB1585, transcriptiona 21.3 1.6E+02 0.0056 19.7 5.0 94 37-158 46-141 (145)
74 2fm9_A Cell invasion protein S 20.6 1.3E+02 0.0045 23.2 4.5 35 92-126 150-184 (215)
75 3cje_A OSMC-like protein; stru 20.6 90 0.0031 22.6 3.6 25 85-109 117-142 (167)
76 3gas_A Heme oxygenase; FMN-bin 20.4 85 0.0029 24.9 3.6 45 83-129 50-97 (259)
77 1lxn_A Hypothetical protein MT 20.3 42 0.0014 22.8 1.5 36 53-88 6-47 (99)
No 1
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=100.00 E-value=4.6e-65 Score=402.59 Aligned_cols=170 Identities=36% Similarity=0.579 Sum_probs=167.4
Q ss_pred CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030790 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPR 80 (171)
Q Consensus 1 M~~~i~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kaI~~s~l~~~p~ 80 (171)
|++++++|+.+|++||+|||||++||+|+|+|||+++||++||+|++++|+||+|+|||++++++|++||+.|+|||||+
T Consensus 13 M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~ 92 (185)
T 1dd5_A 13 MKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPI 92 (185)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHHHHHSSSCCCCE
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCcccHHHceeeecCCCCEEEEEecCHhHHHHHHHHHHHcCCCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030790 81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEIDELTKKYVKSAD 158 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~--~~lseD~~~~~~~~iq~l~d~~~~~id 158 (171)
+||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++. +.+|||+.++++++||++||+|+++||
T Consensus 93 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id 172 (185)
T 1dd5_A 93 NDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLD 172 (185)
T ss_dssp ECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 579999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 030790 159 DICKAKEKEINE 170 (171)
Q Consensus 159 ~l~~~Kekel~~ 170 (171)
+++++||||||+
T Consensus 173 ~~~~~KEkEim~ 184 (185)
T 1dd5_A 173 EVFEIKKEEIME 184 (185)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999996
No 2
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=100.00 E-value=5.2e-65 Score=402.31 Aligned_cols=170 Identities=34% Similarity=0.533 Sum_probs=167.4
Q ss_pred CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030790 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPR 80 (171)
Q Consensus 1 M~~~i~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kaI~~s~l~~~p~ 80 (171)
|++++++|+.+|++||+|||||++||+|+|+|||+++||++||+|++++|+||+|+|||++++++|++||+.|+|||||+
T Consensus 13 M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~ 92 (185)
T 1ise_A 13 MDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPN 92 (185)
T ss_dssp HHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHHHHTTCTTCCCE
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEeccCHhHHHHHHHHHHHcCCCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030790 81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEIDELTKKYVKSAD 158 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~--~~lseD~~~~~~~~iq~l~d~~~~~id 158 (171)
+||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++. +.+|||+.++++++||++||+|+++||
T Consensus 93 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id 172 (185)
T 1ise_A 93 SAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIE 172 (185)
T ss_dssp ESSSEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 579999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 030790 159 DICKAKEKEINE 170 (171)
Q Consensus 159 ~l~~~Kekel~~ 170 (171)
+++++||||||+
T Consensus 173 ~~~~~KEkEim~ 184 (185)
T 1ise_A 173 AALADKEAELMQ 184 (185)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999996
No 3
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=100.00 E-value=6.1e-65 Score=402.11 Aligned_cols=170 Identities=36% Similarity=0.524 Sum_probs=167.3
Q ss_pred CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030790 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPR 80 (171)
Q Consensus 1 M~~~i~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kaI~~s~l~~~p~ 80 (171)
|++++++|+.+|++||+|||||++||+|+|+|||+++||++||+|++++|+||+|+|||++++++|++||+.|+|||||+
T Consensus 13 M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~ 92 (185)
T 1is1_A 13 MDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPM 92 (185)
T ss_dssp HHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHHHHHTTSSCCCE
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEEecCHhHHHHHHHHHHHcCCCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030790 81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEIDELTKKYVKSAD 158 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~--~~lseD~~~~~~~~iq~l~d~~~~~id 158 (171)
+||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++. +.+|||+.++++++||++||+|+++||
T Consensus 93 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id 172 (185)
T 1is1_A 93 SAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKID 172 (185)
T ss_dssp EETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999973 579999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 030790 159 DICKAKEKEINE 170 (171)
Q Consensus 159 ~l~~~Kekel~~ 170 (171)
+++++||||||+
T Consensus 173 ~~~~~KEkEim~ 184 (185)
T 1is1_A 173 EVLAAKEKELME 184 (185)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999996
No 4
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=100.00 E-value=5.9e-65 Score=402.17 Aligned_cols=170 Identities=35% Similarity=0.614 Sum_probs=167.3
Q ss_pred CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030790 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPR 80 (171)
Q Consensus 1 M~~~i~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kaI~~s~l~~~p~ 80 (171)
|++++++|+.+|++||+|||||++||+|+|+|||+++||++||+|++++|+||+|+|||++++++|++||+.|+|||||+
T Consensus 13 M~kai~~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~ 92 (185)
T 1wqg_A 13 MEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPT 92 (185)
T ss_dssp HHHHHHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHHHHHSTTCCCCE
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHHHHcCCCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030790 81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEIDELTKKYVKSAD 158 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~--~~lseD~~~~~~~~iq~l~d~~~~~id 158 (171)
+||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++. +.+|||+.++++++||++||+|+++||
T Consensus 93 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id 172 (185)
T 1wqg_A 93 NDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQID 172 (185)
T ss_dssp ECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999973 579999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 030790 159 DICKAKEKEINE 170 (171)
Q Consensus 159 ~l~~~Kekel~~ 170 (171)
+++++||||||+
T Consensus 173 ~~~~~KEkEim~ 184 (185)
T 1wqg_A 173 ELVKHKEGELLE 184 (185)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999996
No 5
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=100.00 E-value=1.1e-64 Score=405.75 Aligned_cols=170 Identities=39% Similarity=0.618 Sum_probs=167.6
Q ss_pred CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030790 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPR 80 (171)
Q Consensus 1 M~~~i~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kaI~~s~l~~~p~ 80 (171)
|++|+++|+.+|++||+|||||++||+|+|+|||+++||++||+|++++|++|+|+|||++++++|++||++|+||+||+
T Consensus 37 M~kaie~lk~el~~iRtGRA~p~lLd~I~VdyYG~~tPL~qvA~Isvpe~rtl~I~p~D~s~i~~IekAI~~S~LglnP~ 116 (209)
T 4gfq_A 37 MEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPS 116 (209)
T ss_dssp HHHHHHHHHHHHHTCCSBSCCGGGGTTCEEESSSCEEEGGGGEEEEEEETTEEEEEESSGGGHHHHHHHHHHHTSSCCCE
T ss_pred HHHHHHHHHHHHHhhhcCCCCHHHhCCeEEeeCCCccchhhhheeecCCCCEEEEecCcHhhHHHHHHHHHHcCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030790 81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEIDELTKKYVKSAD 158 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~--~~lseD~~~~~~~~iq~l~d~~~~~id 158 (171)
+||+.|+||||+||+|+|++++|.|++.+|+||++|||+|+++++.+|++. +.+|||+.++++++||++||+|+++||
T Consensus 117 ~dG~~Iri~iP~LTeErRkelvK~ak~~~E~aKvaIRniRrda~~~lKk~~K~~~isEDe~k~~e~eiQklTd~~i~~iD 196 (209)
T 4gfq_A 117 NDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVD 196 (209)
T ss_dssp ECSSCEEEECCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCceeeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 579999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 030790 159 DICKAKEKEINE 170 (171)
Q Consensus 159 ~l~~~Kekel~~ 170 (171)
++++.||||||+
T Consensus 197 ~~l~~KEkEim~ 208 (209)
T 4gfq_A 197 EIAKNKEKEIME 208 (209)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcc
Confidence 999999999996
No 6
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=100.00 E-value=6.4e-65 Score=401.80 Aligned_cols=170 Identities=39% Similarity=0.615 Sum_probs=167.1
Q ss_pred CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030790 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPR 80 (171)
Q Consensus 1 M~~~i~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kaI~~s~l~~~p~ 80 (171)
|++++++|+.+|++||+|||||++||+|+|+|||+++||++||+|++++|+||+|+|||++++++|++||+.|+|||||+
T Consensus 14 M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~ 93 (185)
T 1eh1_A 14 MQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPS 93 (185)
T ss_dssp HHHHHHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSSHHHHHHHHHHHSSSTTCCCEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEecCCHhHHHHHHHHHHHcCCCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030790 81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEIDELTKKYVKSAD 158 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~--~~lseD~~~~~~~~iq~l~d~~~~~id 158 (171)
+||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++. +.+|||+.++++++||++||+|+++||
T Consensus 94 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id 173 (185)
T 1eh1_A 94 NKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKAD 173 (185)
T ss_dssp EETTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 479999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 030790 159 DICKAKEKEINE 170 (171)
Q Consensus 159 ~l~~~Kekel~~ 170 (171)
+++++||||||+
T Consensus 174 ~~~~~KEkEim~ 185 (185)
T 1eh1_A 174 QLAEKKEQEILG 185 (185)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 999999999985
No 7
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=100.00 E-value=2.7e-64 Score=397.94 Aligned_cols=168 Identities=32% Similarity=0.537 Sum_probs=166.2
Q ss_pred CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030790 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPR 80 (171)
Q Consensus 1 M~~~i~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kaI~~s~l~~~p~ 80 (171)
|++++++|+++|++||+|||||++||+|+|+|||+++||++||+|++++|+||+|+|||++++++|++||++ +||+||+
T Consensus 16 M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~tpL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~-dLglnP~ 94 (184)
T 1ge9_A 16 MKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEKAIRE-ELNLNPT 94 (184)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHHHHHH-HHCSCCE
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEecCHHHHHHHHHHHHh-CCCCCcc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 030790 81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDI 160 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~~~lseD~~~~~~~~iq~l~d~~~~~id~l 160 (171)
+||+.|+|+||+||+|+|++++|.|++.+|+||++|||+|+++++.+|++.+ +|||+.++++++||++||+|+++||++
T Consensus 95 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~k-iseD~~k~~e~~iQkltd~~i~~id~~ 173 (184)
T 1ge9_A 95 VQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELEG-ISEDEKKRALERLQKLTDKYIDEINKL 173 (184)
T ss_dssp EETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999875 999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 030790 161 CKAKEKEINE 170 (171)
Q Consensus 161 ~~~Kekel~~ 170 (171)
+++||||||+
T Consensus 174 ~~~KEkEim~ 183 (184)
T 1ge9_A 174 MEAKEKEIMS 183 (184)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999999996
No 8
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1
Probab=100.00 E-value=5.5e-36 Score=208.58 Aligned_cols=82 Identities=29% Similarity=0.401 Sum_probs=80.7
Q ss_pred CCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecC-CCcHHHHHHHHhcCCCCCCcccCCCeEEEeCCCCCHH
Q 030790 18 GRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYD-PNTLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKE 96 (171)
Q Consensus 18 gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d-~~~i~~I~kaI~~s~l~~~p~~dg~~i~v~iP~~T~E 96 (171)
|||||++||+|+|+|||+++||+|+|+|+++++|+|+|+||| ++++++|++||++|+||+||++||+.|+|+||++|+|
T Consensus 1 GRa~p~lld~I~V~yyG~~~pL~qvA~isv~~~r~l~I~p~D~~~~~~~IekAI~~S~LglnP~~dG~~Iri~iP~lTeE 80 (84)
T 1wih_A 1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSG 80 (84)
T ss_dssp CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCS
T ss_pred CCCChHHhCCEEEEECCCCccHHHceEEEcCCCCEEEEEecccHHHHHHHHHHHHHCCCCCCcccCCCEEEEeCCCCChh
Confidence 899999999999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred HHH
Q 030790 97 HIQ 99 (171)
Q Consensus 97 ~R~ 99 (171)
+|+
T Consensus 81 rR~ 83 (84)
T 1wih_A 81 PSS 83 (84)
T ss_dssp SCC
T ss_pred ccC
Confidence 986
No 9
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=99.96 E-value=2.2e-29 Score=185.19 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=84.2
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030790 81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEIDELTKKYVKSAD 158 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~--~~lseD~~~~~~~~iq~l~d~~~~~id 158 (171)
..+++|+|+|| |+|+|++|+|.|++++|+||++|||+|+++++.+|++. +.+|||+.++++++||++||+|+++||
T Consensus 33 ~~~~~IRl~iP--TEERRkeLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd~eiSEDe~k~~e~eIQKLTDkyIkkID 110 (123)
T 3lhp_S 33 KFKAAVRKVFP--TEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLTDAAIKKIE 110 (123)
T ss_dssp HHHHHHTTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEeeCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999 99999999999999999999999999999999999974 569999999999999999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030790 159 DICKAKEKEINEG 171 (171)
Q Consensus 159 ~l~~~Kekel~~~ 171 (171)
++++.||+|||+|
T Consensus 111 ~ll~~KEKEIm~~ 123 (123)
T 3lhp_S 111 AALADMEAWLTQG 123 (123)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999997
No 10
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=99.95 E-value=8.9e-28 Score=175.41 Aligned_cols=80 Identities=26% Similarity=0.291 Sum_probs=76.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030790 91 PALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~--~~lseD~~~~~~~~iq~l~d~~~~~id~l~~~Kekel 168 (171)
.|||+|+|++|+|.|++++|+||++|||+|+++++.||++. +.+|||+.++++++||++||+|+++||++++.||+||
T Consensus 31 ~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKLTDkyIkkID~ll~~KEKEI 110 (121)
T 3lf9_A 31 GGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTDVAVKKIDEVLAAKEKEL 110 (121)
T ss_dssp SBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999984 5699999999999999999999999999999999999
Q ss_pred hc
Q 030790 169 NE 170 (171)
Q Consensus 169 ~~ 170 (171)
|+
T Consensus 111 ~~ 112 (121)
T 3lf9_A 111 ME 112 (121)
T ss_dssp HC
T ss_pred HH
Confidence 96
No 11
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=87.58 E-value=2.3 Score=29.23 Aligned_cols=57 Identities=11% Similarity=0.212 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH-------HH------HHHHHHHHHhcCCCCChHHHHH-HHHHHHHHHH
Q 030790 90 IPALTKEHIQAMCKVVAKTSEDVKQSIR-------RS------RQKALDMMKKAGSSLPKDQMKR-LEKEIDELTK 151 (171)
Q Consensus 90 iP~~T~E~R~~l~K~ak~~~E~~k~~iR-------~i------R~~~~~~lkk~~~~lseD~~~~-~~~~iq~l~d 151 (171)
+|..+.|.|+..++.+....++|..-|+ ++ |..++.+|+..+ -++.+ ++.++++++|
T Consensus 24 ~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk-----~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 24 APSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWK-----KTIQSDIKRPLQSLVD 94 (97)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----HHHHHHTHHHHHHHHH
T ss_pred HhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhh
Confidence 4677889999999999998888887654 44 555555555443 24444 5555555554
No 12
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=81.64 E-value=5.1 Score=29.17 Aligned_cols=66 Identities=14% Similarity=0.261 Sum_probs=51.0
Q ss_pred cCCcEEEEeecCCCcHHHHHHHHhcC-----CC--CCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 030790 48 LDSKTLSINPYDPNTLKELECAIVSS-----PL--GLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK 113 (171)
Q Consensus 48 ~~~~~l~I~p~d~~~i~~I~kaI~~s-----~l--~~~p~~dg~~i~v~iP~~T~E~R~~l~K~ak~~~E~~k 113 (171)
.++.-+++..|.-..+.+.++|+..- .+ .++-..+|+.+.+.|.-+.+..|++++|.|.++..++.
T Consensus 79 gsgsgvm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~efn 151 (170)
T 4hhu_A 79 GSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFN 151 (170)
T ss_dssp CTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEECSSEEEEEEESCCHHHHHHHHHHHHHHHHHHT
T ss_pred eCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcc
Confidence 34566777889888888888887542 12 23345799999999999999999999999988876654
No 13
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=79.66 E-value=2.9 Score=27.19 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=30.3
Q ss_pred CcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 030790 78 NPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDV 112 (171)
Q Consensus 78 ~p~~dg~~i~v~iP~~T~E~R~~l~K~ak~~~E~~ 112 (171)
+-..||+.+.+.|..+.+..|++++|.|..++.++
T Consensus 34 tytldgndleiritgvpeqvrkelakeaerlakef 68 (85)
T 2kl8_A 34 TYTLDGNDLEIRITGVPEQVRKELAKEAERLAKEF 68 (85)
T ss_dssp EEEECSSCEEEEEESCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCeeEEEEecChHHHHHHHHHHHHHHHHhc
Confidence 34579999999999999999999999999887665
No 14
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=75.02 E-value=27 Score=27.10 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030790 92 ALTKEHIQAMCKVVAKTSE---------DVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICK 162 (171)
Q Consensus 92 ~~T~E~R~~l~K~ak~~~E---------~~k~~iR~iR~~~~~~lkk~~~~lseD~~~~~~~~iq~l~d~~~~~id~l~~ 162 (171)
.+|+|--+.+++.+.++.+ ++|+.+...-..+.+.++..+..+++++...++..++++-+-.-..=.+.++
T Consensus 118 ~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~~l~~~~~~l~~~~k~~i~~~l~~~~~~L~~~~~~~i~ 197 (219)
T 4e81_A 118 GLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIE 197 (219)
T ss_dssp SCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred cccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5889988888888876654 2333333333333444444444588888888888777765433222223344
Q ss_pred HHHHhh
Q 030790 163 AKEKEI 168 (171)
Q Consensus 163 ~Kekel 168 (171)
+|-++|
T Consensus 198 ~~~~~L 203 (219)
T 4e81_A 198 AKMQEL 203 (219)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 15
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=74.63 E-value=7.5 Score=28.25 Aligned_cols=61 Identities=15% Similarity=0.300 Sum_probs=45.7
Q ss_pred EEeecCCCcHHHHHHHHhc----C-CC--CCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q 030790 54 SINPYDPNTLKELECAIVS----S-PL--GLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQ 114 (171)
Q Consensus 54 ~I~p~d~~~i~~I~kaI~~----s-~l--~~~p~~dg~~i~v~iP~~T~E~R~~l~K~ak~~~E~~k~ 114 (171)
++..|.-..+.+.++|+.. + .+ .++-..+|+.+.+.|.-+.+..|++++|.|.++..++.+
T Consensus 4 m~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~efni 71 (170)
T 4hhu_A 4 MVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFNI 71 (170)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcce
Confidence 4456777777888877654 2 12 234457999999999999999999999999888766543
No 16
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=73.86 E-value=27 Score=26.50 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030790 92 ALTKEHIQAMCKVVAKTSEDVK---QSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEK 166 (171)
Q Consensus 92 ~~T~E~R~~l~K~ak~~~E~~k---~~iR~iR~~~~~~lkk~~~~lseD~~~~~~~~iq~l~d~~~~~id~l~~~Kek 166 (171)
.+|+|.++++-+.-.++..+.. ..++..|.+....+-. ...++..+..+.++|.++..+...+--++..+=.|
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a--~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA--SSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999988766555444332 3444555544444432 45788888889999998888777666555444333
No 17
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=71.29 E-value=35 Score=27.66 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030790 92 ALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG-----SSLPKDQMKRLEKEIDELTKKYVKSAD 158 (171)
Q Consensus 92 ~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~-----~~lseD~~~~~~~~iq~l~d~~~~~id 158 (171)
.+++|.|+.+...+.+.....+...+..-.++++.++... ..+++++.....+..+.+.++|.+++.
T Consensus 236 ~L~~e~q~~i~~aa~~~~~~~~~~~~~~~~~~~~~l~~~~~G~~v~~~~~~~~~~~~~a~~~v~~~~~~~~g 307 (326)
T 3fxb_A 236 GLSAEDQQLVQNAALAAYDHTVVYQQQAADTELAKIMEAKPEMQVTVLTDEQRSCFKEAAAEVEAKFIEMTG 307 (326)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCTTCEEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6889999999998888888888888877777888887532 236888888899999999999987763
No 18
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=70.46 E-value=2.7 Score=23.57 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=17.3
Q ss_pred EeCCCCCHHHHHHHHHHHHH
Q 030790 88 AAIPALTKEHIQAMCKVVAK 107 (171)
Q Consensus 88 v~iP~~T~E~R~~l~K~ak~ 107 (171)
+.+|-+|+|.|...++.+|.
T Consensus 13 Lh~~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 13 LHDPNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp HHCTTCCHHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHhHHHHHhc
Confidence 45899999999999998875
No 19
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=68.59 E-value=31 Score=26.77 Aligned_cols=59 Identities=8% Similarity=0.126 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 030790 106 AKTSEDVKQSIRRSRQKALDMMKKA--GSSLPKDQMKRLEKEIDELTKKYV--KSADDICKAK 164 (171)
Q Consensus 106 k~~~E~~k~~iR~iR~~~~~~lkk~--~~~lseD~~~~~~~~iq~l~d~~~--~~id~l~~~K 164 (171)
..++.++|...-..|.+....|+.. ...+|++....+.+++.+|++... ..|+.++++|
T Consensus 82 ~~yFae~RL~REq~Rsk~~E~L~eII~n~n~S~eeK~eA~~ql~eLt~~~ekE~~IE~LLKAK 144 (197)
T 3tuf_A 82 DDLFTTYRLDLEDARSKEREELNAIVSSDDATAKEKSEAYDKMTALSEVEGTEKQLETLIKTQ 144 (197)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3689999999999999999998875 246899999999999999998664 4566666654
No 20
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=63.65 E-value=53 Score=25.96 Aligned_cols=66 Identities=24% Similarity=0.245 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHH
Q 030790 92 ALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG---SSLPKDQMKRLEKEIDELTKKYVKSA 157 (171)
Q Consensus 92 ~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~---~~lseD~~~~~~~~iq~l~d~~~~~i 157 (171)
.+++|.|+.+...+.+.....+...+..-.++++.++..+ ..+++++.....+-.+.+.+++.++.
T Consensus 220 ~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~e~~~~~~~~~~~v~~~~~~~~ 288 (301)
T 2pfy_A 220 RLPAEVRQAVLDAGAKAEIRGWQTARAKTRELTDTLARNGMSVEPLPPQLAKELQAIGATMVSDWSKKA 288 (301)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888888888888777777777777777788887653 23677788888888888888887654
No 21
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=63.62 E-value=39 Score=27.55 Aligned_cols=66 Identities=12% Similarity=0.226 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHH
Q 030790 91 PALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG---SSLPKDQMKRLEKEIDELTKKYVKS 156 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~---~~lseD~~~~~~~~iq~l~d~~~~~ 156 (171)
=.+++|.|+.+...+++.....+...+..-.++.+.++..+ ..+++++.....+..+.+.+.+.++
T Consensus 238 ~~L~~e~q~~i~~a~~e~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~e~~~~~~~~~~~v~~~~~~~ 306 (328)
T 3u65_B 238 ARIPSRYHDAMLQAATRVRQRLANNLETLDRECSNNIQKAGVSIVHLTPQEIQEWRTEFAADVKRIQAR 306 (328)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999988888888888888888888754 3578888888888888777754443
No 22
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=62.26 E-value=14 Score=24.01 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=27.5
Q ss_pred CCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHHH
Q 030790 82 DGQRLIAAIP-ALTKEHIQAMCKVVAKTSEDVK 113 (171)
Q Consensus 82 dg~~i~v~iP-~~T~E~R~~l~K~ak~~~E~~k 113 (171)
.|.++++.+| -+|.|.+.+..+-++..++.+|
T Consensus 16 ~~KsL~Lf~P~gLt~~Q~~QW~~TIeav~qSak 48 (75)
T 2fqm_A 16 HGKTLRLTLPEGLSGEQKSQWMLTIKAVVQSAK 48 (75)
T ss_dssp TEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEeCCCCccHHHHHHHHHHHHHHHhhhc
Confidence 3468888877 4999999999999999999887
No 23
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=62.04 E-value=14 Score=25.42 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030790 91 PALTKEHIQAMCKVVAKTSEDVKQSIRRSRQ 121 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~ 121 (171)
|..+.|.|+..+..+....++|..-|+...-
T Consensus 29 ~~~~geerk~~i~~ie~~l~EA~ell~qMel 59 (102)
T 1vcs_A 29 PRLPPDEKKQMVANVEKQLEEARELLEQMDL 59 (102)
T ss_dssp GGSCTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999998887543
No 24
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=58.01 E-value=68 Score=25.36 Aligned_cols=66 Identities=18% Similarity=0.128 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHH
Q 030790 92 ALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG---SSLPKDQMKRLEKEIDELTKKYVKSA 157 (171)
Q Consensus 92 ~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~---~~lseD~~~~~~~~iq~l~d~~~~~i 157 (171)
.+++|.|+.+...+++.....+...+..-.++++.++..+ ..+++++.....+-.+.+.+++.++.
T Consensus 219 ~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~e~~~~~~~~~~~v~~~~~~~~ 287 (301)
T 2pfz_A 219 ALDPATQQALKKAGAQAEERGWKLSQEKNSWYKEQLAKNGMAIIAPTAELKSGLTEVGKRMLDDWLKKA 287 (301)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788999999988888888888878777777888887753 24678888888888888888887665
No 25
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=52.21 E-value=74 Score=28.16 Aligned_cols=62 Identities=19% Similarity=0.326 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 030790 91 PALTKEHIQAMCKVVAKTSED---------VKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKK 152 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~E~---------~k~~iR~iR~~~~~~lkk~~~~lseD~~~~~~~~iq~l~d~ 152 (171)
..+|+|.-+.+++.+.++.++ +|+.+...-..+.+.+..+...+++++...++..++++.+-
T Consensus 505 ~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (605)
T 4b9q_A 505 SGLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETA 575 (605)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHH
Confidence 468999999999888776544 33333333333334444444458888888888877776543
No 26
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=51.51 E-value=32 Score=20.72 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=21.3
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 030790 85 RLIAAIPALTKEHIQAMCKVVAKTSED 111 (171)
Q Consensus 85 ~i~v~iP~~T~E~R~~l~K~ak~~~E~ 111 (171)
.|.|.++..|.|.+++|++.+-+.+.+
T Consensus 2 ~I~I~~~grt~eqK~~L~~~it~~~~~ 28 (62)
T 3m20_A 2 VLIVYGPKLDVGKKREFVERLTSVAAE 28 (62)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 466777899999999999977765543
No 27
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=50.23 E-value=85 Score=24.15 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 030790 91 PALTKEHIQAMCKVVAKTSEDV---------KQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEIDELT 150 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~E~~---------k~~iR~iR~~~~~~lkk~~~~lseD~~~~~~~~iq~l~ 150 (171)
+.+|.|.-+.+++.+.++.++= |+.+-..=..+.+.+......+++++...++..++.+-
T Consensus 114 ~~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l~~~~~~~~~~~k~~i~~~l~~~~ 182 (227)
T 1u00_A 114 YGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLS 182 (227)
T ss_dssp SCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHH
Confidence 4589988888888877665432 22222222222233332223467777666666665554
No 28
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=49.01 E-value=95 Score=24.66 Aligned_cols=65 Identities=12% Similarity=0.298 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcC---CCCChHHHHHHHHHHHHHHHHHHHH
Q 030790 92 ALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMM--KKAG---SSLPKDQMKRLEKEIDELTKKYVKS 156 (171)
Q Consensus 92 ~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~l--kk~~---~~lseD~~~~~~~~iq~l~d~~~~~ 156 (171)
.+++|.|+-+...+.+..+..+...+..-.++++.+ ++.+ ..+|+++.....+..+.+.+++.++
T Consensus 222 ~L~~~~q~~l~~a~~~a~~~~~~~~~~~~~~~~~~l~~~~~Gv~v~~~~~~~~~~~~~~~~~v~~~~~~~ 291 (316)
T 2vpn_A 222 GLSEEDQQLVQDAADAAYDHTIEHIKGLSEESLEKIKAASDEVTVTRLNDEQIQAFKERAPQVEEKFIEM 291 (316)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCTTCEEEECCHHHHHHHHTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCEEEeCCHHHHHHHHHHHHHHHHHHHHh
Confidence 578888888888778777777777776667777887 4432 2367888888888888888888763
No 29
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=48.93 E-value=4.1 Score=23.39 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=16.5
Q ss_pred EeCCCCCHHHHHHHHHHHH
Q 030790 88 AAIPALTKEHIQAMCKVVA 106 (171)
Q Consensus 88 v~iP~~T~E~R~~l~K~ak 106 (171)
+.+|-+|+|.|...++.+|
T Consensus 18 Lh~~nLtEeQrn~yI~slk 36 (38)
T 1zda_A 18 LHDPNLNEEQRNAKIKSIR 36 (38)
T ss_dssp HSCSSSCTTHHHHHHHHHS
T ss_pred HcCCCCCHHHHHhHHHHhh
Confidence 5689999999999998765
No 30
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=48.30 E-value=1.1e+02 Score=24.83 Aligned_cols=64 Identities=11% Similarity=0.109 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHH
Q 030790 93 LTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG---SSLPKDQMKRLEKEIDELTKKYVKS 156 (171)
Q Consensus 93 ~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~---~~lseD~~~~~~~~iq~l~d~~~~~ 156 (171)
+++|.|+-+...+.+.....+...+..-.++++.++..+ ..+++|+.....+..+.+.+++.++
T Consensus 257 L~~~~q~~l~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~v~~~~~~~ 323 (365)
T 2hzl_A 257 LTPTYQSLLRTACHAADANMLQLYDWKNPTAIKSLVAQGTQLRPFSPEILQACFEAANEVYAEMEAS 323 (365)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHHHHHHHHcc
Confidence 788999888888888777777777777777778777643 1357787777888888888877653
No 31
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=47.19 E-value=12 Score=28.52 Aligned_cols=65 Identities=11% Similarity=0.216 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030790 92 ALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSAD 158 (171)
Q Consensus 92 ~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~~~lseD~~~~~~~~iq~l~d~~~~~id 158 (171)
.|++|.|.++... ....++=.++|..||+++.+|.-..+-+.-..+.++.+.|++++..+-....
T Consensus 3 ~~~k~~~~~~~~l--~~~~~~~~~LR~qrHdf~NkLqvI~GLlql~~ydea~~yI~~~~~~~q~~~~ 67 (192)
T 1ixm_A 3 DVSKNQEENISDT--ALTNELIHLLGHSRHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVIDAKHESK 67 (192)
T ss_dssp ----------CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666443 3346666789999999999987643222224556677777777777766553
No 32
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=46.80 E-value=64 Score=21.74 Aligned_cols=39 Identities=5% Similarity=0.145 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHH--hcCCCCChHHHHHHHHHHHHHHH
Q 030790 113 KQSIRRSRQKALDMMK--KAGSSLPKDQMKRLEKEIDELTK 151 (171)
Q Consensus 113 k~~iR~iR~~~~~~lk--k~~~~lseD~~~~~~~~iq~l~d 151 (171)
|+.+-+.-..+.+.|+ .+...+++++...++..|+.+-+
T Consensus 6 rN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~ 46 (113)
T 1ud0_A 6 SHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIIS 46 (113)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHH
Confidence 3333333334444554 34456888888888887776654
No 33
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=46.00 E-value=70 Score=22.00 Aligned_cols=20 Identities=25% Similarity=0.523 Sum_probs=13.1
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 030790 132 SSLPKDQMKRLEKEIDELTK 151 (171)
Q Consensus 132 ~~lseD~~~~~~~~iq~l~d 151 (171)
..+++++...++..|+.+-+
T Consensus 41 dkl~~eek~~I~~~i~el~~ 60 (120)
T 2p32_A 41 DKISPEDKKKIEDKCDEILK 60 (120)
T ss_dssp GGSCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 34777777777777765543
No 34
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=44.48 E-value=71 Score=21.61 Aligned_cols=42 Identities=7% Similarity=0.128 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh--cCCCCChHHHHHHHHHHHHHHH
Q 030790 110 EDVKQSIRRSRQKALDMMKK--AGSSLPKDQMKRLEKEIDELTK 151 (171)
Q Consensus 110 E~~k~~iR~iR~~~~~~lkk--~~~~lseD~~~~~~~~iq~l~d 151 (171)
.++|+.+-..=..+.+.|+. +...+++++...++..|+.+.+
T Consensus 8 ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~ 51 (113)
T 3lof_A 8 VSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVIS 51 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHH
Confidence 34444444444444445543 4456788887777777776643
No 35
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=43.16 E-value=83 Score=25.13 Aligned_cols=69 Identities=7% Similarity=0.196 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030790 90 IPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSAD 158 (171)
Q Consensus 90 iP~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~~~lseD~~~~~~~~iq~l~d~~~~~id 158 (171)
.-.+++|.|+.+...+.+..+..+...+..-.++.+.+++.+-.+.+-+.....+..+.+.++|.++..
T Consensus 223 ~~~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~a~~~v~~~~~~~~~ 291 (312)
T 2xwv_A 223 YKELPEDLQKVVKDAAENAAKYHTKLFVDGEKDLVTFFEKQGVKITHPDLVPFKESMKPYYAEFVKQTG 291 (312)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCCSHHHHHHTHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEeccCHHHHHHHHHHHHHHHHHhcc
Confidence 357889999999888887777777777766677777777643223332344555666777777776654
No 36
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=42.36 E-value=69 Score=22.47 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=44.7
Q ss_pred EEEEeecC-CCcHHHHHHHHhcCCCCCCcc---cCCCeEEEeCCCCCHHHHHHHHHHHHHHH
Q 030790 52 TLSINPYD-PNTLKELECAIVSSPLGLNPR---VDGQRLIAAIPALTKEHIQAMCKVVAKTS 109 (171)
Q Consensus 52 ~l~I~p~d-~~~i~~I~kaI~~s~l~~~p~---~dg~~i~v~iP~~T~E~R~~l~K~ak~~~ 109 (171)
.|.|..+| +.++..|...|...+.|+.-. .+|. +.+.+|....+.-..+...+..+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~-i~~~~~~~~~~~~~~L~~~l~~i~ 62 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR-IYLNFAELEFESFSSLMAEIRRIA 62 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE-EEEEECCCCHHHHHHHHHHHHHST
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE-EEEEEEeCCHHHHHHHHHHHHcCC
Confidence 46778887 899999999999998776643 3444 999999888888888887777654
No 37
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=42.29 E-value=1.1e+02 Score=27.13 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 030790 91 PALTKEHIQAMCKVVAKTSEDVKQ---------SIRRSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTK 151 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~E~~k~---------~iR~iR~~~~~~lkk~~~~lseD~~~~~~~~iq~l~d 151 (171)
..+|+|..+.+++.+.++.++=+. .+-..=..+.+.+..+...+++++...++..++.+-+
T Consensus 505 ~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 574 (605)
T 2kho_A 505 SGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALET 574 (605)
T ss_dssp SSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHH
Confidence 568999988888888776543222 1111112222333333345788888888877776654
No 38
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=40.62 E-value=65 Score=21.44 Aligned_cols=30 Identities=10% Similarity=0.255 Sum_probs=15.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030790 135 PKDQMKRLEKEIDELTKKYVKSADDICKAK 164 (171)
Q Consensus 135 seD~~~~~~~~iq~l~d~~~~~id~l~~~K 164 (171)
+.|-..+.+.++++..+-..+.+|+++..-
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~Rg 32 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERD 32 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334455555555555555555555554433
No 39
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=39.28 E-value=99 Score=24.89 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHH
Q 030790 92 ALTKEHIQAMCKVVAKTSEDVKQSIR-RSRQKALDMMKKAGS---SLPKDQMKRLEKEIDELTKKYVK 155 (171)
Q Consensus 92 ~~T~E~R~~l~K~ak~~~E~~k~~iR-~iR~~~~~~lkk~~~---~lseD~~~~~~~~iq~l~d~~~~ 155 (171)
.+++|.|+-+...+.+.....+...+ ..-.++.+.+++.+- .+|+++.....+..+.+.++|..
T Consensus 240 ~L~~e~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~a~~~v~~~~~~ 307 (327)
T 2hpg_A 240 SLPKEYQKIIEEEMDKAGIEVSLKIMKELEEEYKQKCIEKGMAVIPASEIDKEAFMEKAKQAYKNLGL 307 (327)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCEEECGGGSCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCChhhHHHHHHHHHHHHHHHhc
Confidence 56788888888877777777777777 666677777776531 34577777777778888877743
No 40
>1usp_A Organic hydroperoxide resistance protein; oxidoreductase, 2-Cys peroxidase; 1.9A {Deinococcus radiodurans} SCOP: d.227.1.1 PDB: 1usp_B
Probab=36.65 E-value=33 Score=24.16 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=21.3
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHH
Q 030790 85 RLIAAIPALTKEHIQAMCKVVAKTSE 110 (171)
Q Consensus 85 ~i~v~iP~~T~E~R~~l~K~ak~~~E 110 (171)
.+.|.+|.+++|.+++++..|.+.|=
T Consensus 97 ~~~v~~~~~~~e~~~~l~~~a~~~Cp 122 (139)
T 1usp_A 97 ELEGHFPGLSREQAEGLMHAAHEVCP 122 (139)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHCH
T ss_pred EEEEEECCCCHHHHHHHHHHHHhhCc
Confidence 36677888999999999998877653
No 41
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=35.59 E-value=9.7 Score=28.79 Aligned_cols=32 Identities=9% Similarity=0.249 Sum_probs=29.7
Q ss_pred CCCcHHHHHHHHhcCCCCCCcccCCCeEEEeC
Q 030790 59 DPNTLKELECAIVSSPLGLNPRVDGQRLIAAI 90 (171)
Q Consensus 59 d~~~i~~I~kaI~~s~l~~~p~~dg~~i~v~i 90 (171)
|....+.|.+.|.+|.+-++++..|..|||+=
T Consensus 103 ~~e~AKkIvK~IKdsklKVqa~IQGd~vRVtg 134 (163)
T 1in0_A 103 ETEMAKKITKLVKDSKIKVQTQIQGEQVRVTG 134 (163)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCcceeEecCcEEEEec
Confidence 78899999999999999999999999999863
No 42
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=34.00 E-value=1.1e+02 Score=27.54 Aligned_cols=68 Identities=10% Similarity=0.154 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030790 97 HIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKE 167 (171)
Q Consensus 97 ~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~~~lseD~~~~~~~~iq~l~d~~~~~id~l~~~Keke 167 (171)
.|+.+.|.+ -++....+..+|.+..+.|...-........+.++..++..++..-..++.++..|++.
T Consensus 589 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 656 (695)
T 2j69_A 589 ARRELVKTA---KKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQTR 656 (695)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 588888876 55666667777777774444321001122333567778888888888888888888764
No 43
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=33.97 E-value=1.1e+02 Score=20.53 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 030790 99 QAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEIDE 148 (171)
Q Consensus 99 ~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~~~lseD~~~~~~~~iq~ 148 (171)
.+.+..-.=+-.+.+..|+++|.+..+.|... .+++...+++|+.
T Consensus 25 rEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h-----~~ei~~le~~i~r 69 (84)
T 1gmj_A 25 REQAEEERYFRARAKEQLAALKKHKENEISHH-----AKEIERLQKEIER 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 33444444445666777888887776666653 2455666666643
No 44
>2bjo_A Organic hydroperoxide resistance protein OHRB; heat shock protein, oxidor; 2.10A {Bacillus subtilis}
Probab=33.61 E-value=39 Score=23.67 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=21.0
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHH
Q 030790 85 RLIAAIPALTKEHIQAMCKVVAKTSE 110 (171)
Q Consensus 85 ~i~v~iP~~T~E~R~~l~K~ak~~~E 110 (171)
.+.+.+|.+++|..++++..|.+.|=
T Consensus 95 ~~~v~~~~~~~e~~~~l~~~a~~~Cp 120 (136)
T 2bjo_A 95 TLVVNTKDLDREKAQELVNAAHEFCP 120 (136)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHCH
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHhCc
Confidence 34668999999999999998887553
No 45
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=33.52 E-value=1.9e+02 Score=23.34 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHH
Q 030790 93 LTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG---SSLPKDQMKRLEKEIDELTKKYVK 155 (171)
Q Consensus 93 ~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~---~~lseD~~~~~~~~iq~l~d~~~~ 155 (171)
+++|.|+.+...+.+..+..+...+..-.++++.+++.+ ..+++++.....+..+.+.+++.+
T Consensus 264 L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~v~~~~~~ 329 (361)
T 2zzv_A 264 LPKPLQERFIAAVHEYSWIHYAGIQKANLEAWPKYRQAGVEVIRLSNEDVRKFRRLAIPIWFKWAK 329 (361)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 788888888887777777777777766667777777643 236778888888888888877743
No 46
>1qwi_A OSMC, osmotically inducible protein; hydroperoxide resistance, hydroperoxide reductase; 1.80A {Escherichia coli} SCOP: d.227.1.1
Probab=33.34 E-value=41 Score=23.85 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=20.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHH
Q 030790 86 LIAAIPALTKEHIQAMCKVVAKTS 109 (171)
Q Consensus 86 i~v~iP~~T~E~R~~l~K~ak~~~ 109 (171)
+.|.+|.+++|.+++++..|.+.|
T Consensus 102 ~~v~~~~~~~e~~~~l~~~a~~~C 125 (143)
T 1qwi_A 102 SEVAVPGIDASTFDGIIQKAKAGC 125 (143)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHS
T ss_pred EEEEeCCCCHHHHHHHHHHHHccC
Confidence 566789999999999999887765
No 47
>1n2f_A Organic hydroperoxide resistance protein; peroxide reductase, oxidoreductase; 2.01A {Pseudomonas aeruginosa} SCOP: d.227.1.1
Probab=32.96 E-value=40 Score=23.88 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=21.4
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHH
Q 030790 85 RLIAAIPALTKEHIQAMCKVVAKTSE 110 (171)
Q Consensus 85 ~i~v~iP~~T~E~R~~l~K~ak~~~E 110 (171)
.+.|.+|.+++|.+++++..|.+.|=
T Consensus 100 ~~~v~~~~~~~e~~~~l~~~a~~~Cp 125 (142)
T 1n2f_A 100 ELHINLPGMEREAAEALVAAAHQVCP 125 (142)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHCH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHhCc
Confidence 36778899999999999998877653
No 48
>2ql8_A Putative redox protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.50A {Lactobacillus casei}
Probab=32.38 E-value=35 Score=24.25 Aligned_cols=25 Identities=4% Similarity=0.090 Sum_probs=20.8
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHH
Q 030790 86 LIAAIPALTKEHIQAMCKVVAKTSE 110 (171)
Q Consensus 86 i~v~iP~~T~E~R~~l~K~ak~~~E 110 (171)
+.|.+|.+++|.+++++..|.+.|=
T Consensus 98 ~~v~~~g~~~e~~~~l~~~a~~~Cp 122 (143)
T 2ql8_A 98 AQVMVKGVDFDTAKAFTNEIENRCP 122 (143)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHCH
T ss_pred EEEEECCCCHHHHHHHHHHHHhcCc
Confidence 6677898999999999998876553
No 49
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=31.03 E-value=81 Score=18.33 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030790 133 SLPKDQMKRLEKEIDELTKKYVKSADDICKAKEKEI 168 (171)
Q Consensus 133 ~lseD~~~~~~~~iq~l~d~~~~~id~l~~~Kekel 168 (171)
|+|+|+.-..-+.|+.-+.+.-++|.+ ++.|.++|
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~~-lqkKlkeL 35 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQISK-LKKKQQQL 35 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 356666655556666666666666654 34555554
No 50
>3qwo_C Motavizumab epitope scaffold; immune complex, immune system; HET: EDO; 1.90A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=30.78 E-value=28 Score=21.58 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=20.1
Q ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHH
Q 030790 88 AAIPALTKEHIQAMCKVVAKTSEDVK 113 (171)
Q Consensus 88 v~iP~~T~E~R~~l~K~ak~~~E~~k 113 (171)
+.+|-+|+|.|...++.+|.--..+.
T Consensus 14 l~lpnLtEeqRn~yI~slkdDPs~S~ 39 (57)
T 3qwo_C 14 ANLPNLNEEQRSAFLSSINDDPSQSA 39 (57)
T ss_dssp HHCTTCCHHHHHHHHHHHHHCGGGHH
T ss_pred HcCCCcchhhccchHhhhccCcchhH
Confidence 45899999999999998876544443
No 51
>1zb9_A OHR, organic hydroperoxide resistance protein; oxidoreductase; HET: PE4; 1.80A {Xylella fastidiosa} PDB: 1zb8_A*
Probab=29.72 E-value=49 Score=23.42 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=20.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHH
Q 030790 86 LIAAIPALTKEHIQAMCKVVAKTSE 110 (171)
Q Consensus 86 i~v~iP~~T~E~R~~l~K~ak~~~E 110 (171)
+.|.+|.+++|..++++..|.+.|=
T Consensus 102 ~~v~~~~~~~e~~~~l~~~a~~~Cp 126 (143)
T 1zb9_A 102 LRIAVSGMERSMLQTLVDKAHRVCP 126 (143)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHCH
T ss_pred EEEEECCCCHHHHHHHHHHHHhhCc
Confidence 6677899999999999998877653
No 52
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=28.84 E-value=46 Score=27.92 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=40.6
Q ss_pred cHHHHHHHHhcCCCCCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 030790 62 TLKELECAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK 113 (171)
Q Consensus 62 ~i~~I~kaI~~s~l~~~p~~dg~~i~v~iP~~T~E~R~~l~K~ak~~~E~~k 113 (171)
....+.+++.+.++-+++...+..+++.++..|.|.-+.++..+++..++.+
T Consensus 387 ~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~ 438 (497)
T 3mc6_A 387 NIHELSDRLSKKGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQELK 438 (497)
T ss_dssp THHHHHHHHHTTTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 4678888898887776665556678999998999988888888877766543
No 53
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=28.34 E-value=1.7e+02 Score=21.13 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=33.6
Q ss_pred CCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CCCChHHHHH
Q 030790 92 ALTKEHIQAM----CKVVAKTSEDVKQSIRRSRQKALDMMKKA-G-SSLPKDQMKR 141 (171)
Q Consensus 92 ~~T~E~R~~l----~K~ak~~~E~~k~~iR~iR~~~~~~lkk~-~-~~lseD~~~~ 141 (171)
.||.++|..| .+.|+...++-+..-..-|+.++..--+. . .++|+|+...
T Consensus 10 ~mt~~Rk~~Lk~lll~kA~e~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e 65 (133)
T 1j1d_C 10 KISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQD 65 (133)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 6899998765 55666777777777777888877654432 2 4567666443
No 54
>1nye_A Osmotically inducible protein C; OSMC, structural genomics, peroxiredoxin, BSGC structure funded by NIH, protein structure initiative, PSI; 2.40A {Escherichia coli} SCOP: d.227.1.1
Probab=27.88 E-value=56 Score=23.90 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=20.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHH
Q 030790 86 LIAAIPALTKEHIQAMCKVVAKTS 109 (171)
Q Consensus 86 i~v~iP~~T~E~R~~l~K~ak~~~ 109 (171)
+.|.+|.+++|.+++++..|.+.|
T Consensus 121 ~~v~~~g~~~e~~~~l~~~A~~~C 144 (162)
T 1nye_A 121 SEVAVPGIDASTFDGIIQKAKAGC 144 (162)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCHHHHHHHHHHHHhcC
Confidence 567789999999999999887765
No 55
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=27.86 E-value=1.4e+02 Score=20.19 Aligned_cols=42 Identities=19% Similarity=0.386 Sum_probs=27.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 030790 108 TSEDVKQSI-RRSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKK 152 (171)
Q Consensus 108 ~~E~~k~~i-R~iR~~~~~~lkk~~~~lseD~~~~~~~~iq~l~d~ 152 (171)
.||+||..| |.|=++ +..|.. .+|+|..++.+-++|-+|..+
T Consensus 25 ~AekWR~qvikEIs~K-v~~Iqn--~~L~E~~IRdLNDEINkL~rE 67 (92)
T 1x4t_A 25 KAEKWRRQIIGEISKK-VAQIQN--AGLGEFRIRDLNDEINKLLRE 67 (92)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHH--CCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHhhC--CCCCHHHHHHHHHHHHHHHHH
Confidence 477777663 333322 333333 479999999999988888765
No 56
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=27.63 E-value=2e+02 Score=21.82 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=32.8
Q ss_pred CCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CCCChHHHHH
Q 030790 92 ALTKEHIQAM----CKVVAKTSEDVKQSIRRSRQKALDMMKKA-G-SSLPKDQMKR 141 (171)
Q Consensus 92 ~~T~E~R~~l----~K~ak~~~E~~k~~iR~iR~~~~~~lkk~-~-~~lseD~~~~ 141 (171)
.||.++|..| .+.|....++-+.....-|+.++..--+. . .++|+|++..
T Consensus 10 ~mt~~Rk~~Lk~lll~kA~e~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e 65 (180)
T 1j1e_C 10 KISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQD 65 (180)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 6899998775 55666677777777777888777654432 1 3456665433
No 57
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=27.49 E-value=1e+02 Score=18.47 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=20.2
Q ss_pred eEEEeCCC----CCHHHHHHHHHHHHHHHHH
Q 030790 85 RLIAAIPA----LTKEHIQAMCKVVAKTSED 111 (171)
Q Consensus 85 ~i~v~iP~----~T~E~R~~l~K~ak~~~E~ 111 (171)
.|.|.+.+ .|.|.+++|++.+-+.+.+
T Consensus 2 ~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~ 32 (67)
T 3m21_A 2 FINIKLVPENGGPTNEQKQQLIEGVSDLMVK 32 (67)
T ss_dssp EEEEEECCBTTBSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 36677664 8999999999977765543
No 58
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=27.22 E-value=13 Score=24.03 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=21.0
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHH
Q 030790 81 VDGQRLIAAIPALTKEHIQAMCKVVA 106 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak 106 (171)
.+|..|-||+.+|+.|-++-+-+..+
T Consensus 34 ~nGv~I~VP~~klS~~D~~yve~~~g 59 (68)
T 2hbp_A 34 ANGVKIAVAADKLSNEDLAYVEKITG 59 (68)
T ss_dssp TTSCEEEEETTSBCHHHHHHHHHHHS
T ss_pred cCCcEEEeEhHHcCHHHHHHHHHHhc
Confidence 47889999999999998876655443
No 59
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=26.64 E-value=2.4e+02 Score=22.54 Aligned_cols=51 Identities=16% Similarity=0.103 Sum_probs=37.6
Q ss_pred cHHHHHHHHhcCCCCCCc-c--------cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 030790 62 TLKELECAIVSSPLGLNP-R--------VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDV 112 (171)
Q Consensus 62 ~i~~I~kaI~~s~l~~~p-~--------~dg~~i~v~iP~~T~E~R~~l~K~ak~~~E~~ 112 (171)
....+...+.+.++-+.| . ..+..||+.++.+|.|.-++.++.+++...++
T Consensus 356 ~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 356 VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 456777778888776666 1 23468999998789998888888777766544
No 60
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=25.75 E-value=1.4e+02 Score=23.57 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030790 91 PALTKEHIQAMCKVVAKTSEDVKQSIRRSRQ 121 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~ 121 (171)
|.+|.|-|.-|.-.-|.....-|.+.|-+-.
T Consensus 41 ~eLt~EERnLLSvAYKNvig~rR~swRiiss 71 (227)
T 2o8p_A 41 SEFDDEERHLLTLCIKHKISDYRTMTSQVLQ 71 (227)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 4689999999999999999998999888765
No 61
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=25.65 E-value=3.6e+02 Score=24.12 Aligned_cols=62 Identities=5% Similarity=0.063 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHH
Q 030790 90 IPALTKEHIQAMCKVVAKTSEDVK---------QSIRRSRQKALDMMKK-AGSSLPKDQMKRLEKEIDELTK 151 (171)
Q Consensus 90 iP~~T~E~R~~l~K~ak~~~E~~k---------~~iR~iR~~~~~~lkk-~~~~lseD~~~~~~~~iq~l~d 151 (171)
.+.+|+|..+.+++.+.++.++=+ +.+-..=.+..+.|.. +...+++++...++..++.+-+
T Consensus 521 ~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 592 (675)
T 3d2f_A 521 TFGLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEE 592 (675)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 358999999999988887665322 2222111222233322 2234788888888877776653
No 62
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=25.61 E-value=2.5e+02 Score=22.13 Aligned_cols=71 Identities=8% Similarity=0.051 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030790 91 PALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMM-KKAGS--SLPKDQMKRLEKEIDELTKKYVKSADDIC 161 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~l-kk~~~--~lseD~~~~~~~~iq~l~d~~~~~id~l~ 161 (171)
|.+|.|-|.-|.-.-|.....-|.+.|-+-.--.+.- +.... .+-++-..+++++|..+.++.+.-+|..+
T Consensus 39 ~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~L 112 (236)
T 3iqu_A 39 EELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHL 112 (236)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred CcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5799999999999999988888999987754222221 11111 12334455677777777777777776654
No 63
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=24.73 E-value=2.7e+02 Score=22.25 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030790 90 IPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGS-----SLPKDQMKRLEKEIDELTKKYVKSADDIC 161 (171)
Q Consensus 90 iP~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~~-----~lseD~~~~~~~~iq~l~d~~~~~id~l~ 161 (171)
.|.+|.|-|.-|.-.-|.....-|.+.|-+-. +..+-. .++ .+-.+-..+++++|..+.++.+.-+|+.+
T Consensus 61 ~~eLt~EERnLLSvAyKNvIg~rR~swRiiss-ieqke~-~k~~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~L 135 (260)
T 2npm_A 61 SEELTVEERNLLSVAYKNAVGSRRSSWRIISS-VEQKEH-SRNAEDASKMCGKYRSKVEAELTDICNDILTMLDKHL 135 (260)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCCHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHhh-ccCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 46799999999999999999999999888744 111111 011 01123334455666666666666666543
No 64
>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X*
Probab=24.00 E-value=23 Score=24.89 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=39.0
Q ss_pred ccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCccc-------CCCeEEEeCCCCCHHHHHHHHHHHH
Q 030790 37 MPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPRV-------DGQRLIAAIPALTKEHIQAMCKVVA 106 (171)
Q Consensus 37 ~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kaI~~s~l~~~p~~-------dg~~i~v~iP~~T~E~R~~l~K~ak 106 (171)
+|+.+| ..+.++ .||+.-+..+..+|...++-++|.. +|..-+. -+.-++|=+..+.+.
T Consensus 17 IPi~~I---~~p~~~-----~~d~~kv~eL~~SI~~~Gl~l~PI~Vr~~~g~~~~~~Y~---li~G~hRl~A~k~Lg 82 (110)
T 1xw3_A 17 VPLSVL---IRPLPS-----VLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFY---SFGGCHRYAAYQQLQ 82 (110)
T ss_dssp EEGGGE---ECCSCC-----CCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEE---CCSCHHHHHHHHHTT
T ss_pred eCHHHc---cCCCCC-----ccCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcEE---EEcchHHHHHHHHcC
Confidence 555554 355554 8899999999999999987777751 1222122 356777777666543
No 65
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=23.87 E-value=1.6e+02 Score=23.37 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=35.2
Q ss_pred cHHHHHHHHhcCCCCCCccc---------CCCeEEEeCCC-----CCHHHHHHHHHHHHHHHHH
Q 030790 62 TLKELECAIVSSPLGLNPRV---------DGQRLIAAIPA-----LTKEHIQAMCKVVAKTSED 111 (171)
Q Consensus 62 ~i~~I~kaI~~s~l~~~p~~---------dg~~i~v~iP~-----~T~E~R~~l~K~ak~~~E~ 111 (171)
....+...+.+.++-+.|.. .+..+|+.+|. .|+|.-+.++..+++.+.+
T Consensus 324 ~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 324 TGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 34567777777775444421 24579999975 7898888888888877665
No 66
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=23.84 E-value=2.8e+02 Score=22.13 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030790 90 IPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGS-----SLPKDQMKRLEKEIDELTKKYVKSADDIC 161 (171)
Q Consensus 90 iP~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~~-----~lseD~~~~~~~~iq~l~d~~~~~id~l~ 161 (171)
.|.+|.|-|.-|.-.-|.....-|.+.|-+-.- ..+-. .++ .+-.+-..+++++|..+.++.+.-||..+
T Consensus 40 ~~eLt~EERnLLSvaYKNvig~rR~swRiissi-eqke~-~k~~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~L 114 (260)
T 1o9d_A 40 SEELTVEERNLLSVAYKNVIGARRASWRIISSI-EQKEE-SRGNEEHVNSIREYRSKIENELSKICDGILKLLDAKL 114 (260)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHH-HHHhh-ccCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 357999999999999999888888888887542 11111 011 01122334455666666666666665543
No 67
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=23.68 E-value=2.6e+02 Score=21.83 Aligned_cols=70 Identities=13% Similarity=0.089 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030790 91 PALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGS----SLPKDQMKRLEKEIDELTKKYVKSADDIC 161 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk~~~----~lseD~~~~~~~~iq~l~d~~~~~id~l~ 161 (171)
|.+|.|-|.-+.-.-|.....-|.+.|-+-. +..+-...+. .+-++-..+++++|..+.++.+.-+|+.+
T Consensus 36 ~eLt~EERnLLsvayKnvig~rR~swRiiss-ieqk~~~k~~~~~~~~i~~yr~kie~EL~~iC~~il~lld~~L 109 (234)
T 2br9_A 36 VELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHL 109 (234)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHhhccCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 5699999999999999999999999888754 2111110000 11223344556666666666666666544
No 68
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=23.66 E-value=1.3e+02 Score=18.15 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030790 97 HIQAMCKVVAKTSEDVKQSIRRSRQK 122 (171)
Q Consensus 97 ~R~~l~K~ak~~~E~~k~~iR~iR~~ 122 (171)
-|.++.+.= +.+|.||..|..+|+.
T Consensus 13 Aqe~iLr~E-rELEeAr~~La~iR~~ 37 (50)
T 2qdq_A 13 AQEEMLRKE-RELEEARKKLAQIRQQ 37 (50)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 456666644 4589999999999975
No 69
>1ukk_A Osmotically inducible protein C; peroxidase, cysteinesulfinic acid, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.60A {Thermus thermophilus} SCOP: d.227.1.1
Probab=23.16 E-value=38 Score=24.04 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=19.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHH
Q 030790 86 LIAAIPALTKEHIQAMCKVVAKTS 109 (171)
Q Consensus 86 i~v~iP~~T~E~R~~l~K~ak~~~ 109 (171)
+.|.+|.+++|.+++++..|.+.|
T Consensus 100 ~~v~~~~~~~e~~~~l~~~a~~~C 123 (142)
T 1ukk_A 100 TEAEVPGISSEKFLEIAEAAKEGC 123 (142)
T ss_dssp EEEECTTCCHHHHHHHHHHHTTSS
T ss_pred EEEEeCCCCHHHHHHHHHHHHhcC
Confidence 667789999999999998877644
No 70
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=22.86 E-value=1.1e+02 Score=19.08 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=36.2
Q ss_pred EEEEeecC-CCcHHHHHHHHhcCCCCCCc---cc-CCC---eEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 030790 52 TLSINPYD-PNTLKELECAIVSSPLGLNP---RV-DGQ---RLIAAIPALTKEHIQAMCKVVAKTSED 111 (171)
Q Consensus 52 ~l~I~p~d-~~~i~~I~kaI~~s~l~~~p---~~-dg~---~i~v~iP~~T~E~R~~l~K~ak~~~E~ 111 (171)
.|.|...| |..+..|...|.+.+.|+.- .. +|. .+.+.+|. .+..+++.+..+.++++
T Consensus 7 ~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~--~~~l~~l~~~L~~~~~~ 72 (91)
T 1zpv_A 7 IITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE--KQDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS--CCCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC--CCCHHHHHHHHHHHHHH
Confidence 35555554 99999999999999876632 22 232 34444554 23556666666666554
No 71
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=22.60 E-value=98 Score=21.10 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=27.1
Q ss_pred EEEeecCC------CcHHHHHHHHhcCCCCCCcccCCCeEEEeC
Q 030790 53 LSINPYDP------NTLKELECAIVSSPLGLNPRVDGQRLIAAI 90 (171)
Q Consensus 53 l~I~p~d~------~~i~~I~kaI~~s~l~~~p~~dg~~i~v~i 90 (171)
|.|.|... .+|..+.+.|++|+|.+....-|++|.=.+
T Consensus 10 ~sv~Plg~~~~svs~~Va~~i~~i~~sGl~y~~~pm~T~IEGe~ 53 (104)
T 1lxj_A 10 VCMVPIGTDSASISDFVALIEKKIRESPLKSTLHSAGTTIEGPW 53 (104)
T ss_dssp EEEEEESCSCSCCHHHHHHHHHHHHTSSSEEEEETTEEEEEEEH
T ss_pred EEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEeCCCccEEEcCH
Confidence 55567642 456677777888999888777888887443
No 72
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=21.44 E-value=1.5e+02 Score=18.07 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCChHHHHHH
Q 030790 91 PALTKEHIQAMCKVVAKTSEDVKQSI--RRSRQKALDMMKKAGSSLPKDQMKRL 142 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~E~~k~~i--R~iR~~~~~~lkk~~~~lseD~~~~~ 142 (171)
|.=+...|++++..|.....+-++.= ..-|.. -|+. +||+++++..+
T Consensus 2 ~~~~~~~Re~li~~Av~FL~dp~V~~sp~~~K~~---FL~s--KGLt~~EI~~A 50 (54)
T 3ff5_A 2 PLGSPEFREPLIATAVKFLQNSRVRQSPLATRRA---FLKK--KGLTDEEIDLA 50 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHCTTGGGSCHHHHHH---HHHH--TTCCHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHhCChhhhcCCHHHHHH---HHHH--cCCCHHHHHHH
Confidence 55577889999999999988876652 222222 2332 57999887654
No 73
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=21.34 E-value=1.6e+02 Score=19.75 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=54.0
Q ss_pred ccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCC-CCCcc-cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q 030790 37 MPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPL-GLNPR-VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQ 114 (171)
Q Consensus 37 ~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kaI~~s~l-~~~p~-~dg~~i~v~iP~~T~E~R~~l~K~ak~~~E~~k~ 114 (171)
.+..+||... -.+++.+..+.+.+.+.++ --.+. .|+....| .+|++-++.+ +.+..
T Consensus 46 ~t~~eLa~~l----------~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~---~LT~~G~~~~--------~~~~~ 104 (145)
T 3g3z_A 46 RTQKHIGEKW----------SLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLL---SLTETGKAYA--------APLTE 104 (145)
T ss_dssp BCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCE---EECHHHHHHH--------HHHHH
T ss_pred CCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEeeccCCCCCceeee---eEChhHHHHH--------HHHHH
Confidence 5666666532 1367788888888888876 32333 24444444 4577666532 22222
Q ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030790 115 SIRRSRQKALDMMKKAGSSLPKDQMKRLEKEIDELTKKYVKSAD 158 (171)
Q Consensus 115 ~iR~iR~~~~~~lkk~~~~lseD~~~~~~~~iq~l~d~~~~~id 158 (171)
.++.....+. . .+++++...+..-++++.+...+.++
T Consensus 105 ~~~~~~~~~~---~----~l~~~e~~~l~~~l~~l~~~l~~~~~ 141 (145)
T 3g3z_A 105 SAQEFSDKVF---A----TFGDKRTTRLFADLDALAEVMEKTIS 141 (145)
T ss_dssp HHHHHHHHHH---H----HHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---H----HcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 1 25888888888888887777666655
No 74
>2fm9_A Cell invasion protein SIPA; type II secretion, virulence, bacterial, C invasion; 2.00A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=20.63 E-value=1.3e+02 Score=23.17 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030790 92 ALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126 (171)
Q Consensus 92 ~~T~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~ 126 (171)
.+.+++|.++...+-+.+.+|=.++|+.|++..+.
T Consensus 150 ~Ld~~T~s~it~LVD~aA~~A~~aL~~~~~~l~~~ 184 (215)
T 2fm9_A 150 TLDPLTRSNLTHLVDKAAAKAVEALDMCHQKLTQE 184 (215)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 47789999999999999999999999999876544
No 75
>3cje_A OSMC-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; HET: MSE; 1.70A {Jannaschia SP}
Probab=20.63 E-value=90 Score=22.58 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=20.3
Q ss_pred eEEEeCCC-CCHHHHHHHHHHHHHHH
Q 030790 85 RLIAAIPA-LTKEHIQAMCKVVAKTS 109 (171)
Q Consensus 85 ~i~v~iP~-~T~E~R~~l~K~ak~~~ 109 (171)
.+.|.||. +++|.+++++..|.+.|
T Consensus 117 ~~~v~~~~~~~~e~~~~l~~~a~~~C 142 (167)
T 3cje_A 117 EIDIILHSPDPIEAQQALIEAAKKGC 142 (167)
T ss_dssp EEEEECCCCSCHHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 46677886 99999999999886655
No 76
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}
Probab=20.39 E-value=85 Score=24.91 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=32.5
Q ss_pred CCeEEEeCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030790 83 GQRLIAAIPALT---KEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 129 (171)
Q Consensus 83 g~~i~v~iP~~T---~E~R~~l~K~ak~~~E~~k~~iR~iR~~~~~~lkk 129 (171)
+..++|++|++- ++.|..++..++... ++..+..++.++..-+..
T Consensus 50 ~~~~ri~F~~~~~~~~~~r~~lV~m~~~A~--~~l~l~~l~~ei~~ll~~ 97 (259)
T 3gas_A 50 NQTLRIEFNHEVKDPKDYKNATIELCQSVE--KTHDLKGVEEEVKAFKEG 97 (259)
T ss_dssp TEEEEEECSSCCCCGGGHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCcCCCHHHHHHHHHHHHHHHH--HhcChhhHHHHHHHHHHh
Confidence 578999999853 578999998877654 344566777777766664
No 77
>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein ST initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.48.1
Probab=20.30 E-value=42 Score=22.80 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=25.6
Q ss_pred EEEeecCC------CcHHHHHHHHhcCCCCCCcccCCCeEEE
Q 030790 53 LSINPYDP------NTLKELECAIVSSPLGLNPRVDGQRLIA 88 (171)
Q Consensus 53 l~I~p~d~------~~i~~I~kaI~~s~l~~~p~~dg~~i~v 88 (171)
|.|.|... .++..+.+.|++|+|.+....-|++|.=
T Consensus 6 ~sv~Plg~~~~svs~~Va~~i~~i~~sgl~y~~~pm~T~iEG 47 (99)
T 1lxn_A 6 LTVIPLGTCSTSLSSYVAAAVEALKKLNVRYEISGMGTLLEA 47 (99)
T ss_dssp EEEEESSCSSSCCHHHHHHHHHHHTTSSCEEEEETTEEEEEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHcCCCeEeCCCeeEEEC
Confidence 55667643 4566777778888888877777787774
Done!