BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030793
         (171 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GL5|A Chain A, Crystal Structure Of Probable Dsba Oxidoreductase Sco1869
           From Streptomyces Coelicolor
          Length = 239

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 48  GLEYNMSGLT-GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYI-GDKEFLVEC 105
           GL Y       G+T D HRLL+LA ++G  +   L +  + G F   + +  D E LVE 
Sbjct: 87  GLAYRTRDRDHGSTFDLHRLLHLAKERG--RHEALLDAFYRGNFADERSVFNDDERLVEL 144

Query: 106 ARKVGV--EGAAEFLDDPNSGLNEVH-EELKKYSANISGVPHFVLNGKHELSGGQPPEVY 162
           A   G+  E     L DP +  +EV  +E +      +GVP FVL+  + +SG QP EV+
Sbjct: 145 AVGAGLDAEEVRAVLADPAAYADEVRADEREAAQLGATGVPFFVLDRAYGVSGAQPAEVF 204

Query: 163 LRAFQVA 169
            +A   A
Sbjct: 205 TQALTQA 211


>pdb|3C7M|A Chain A, Crystal Structure Of Reduced Dsbl
 pdb|3C7M|B Chain B, Crystal Structure Of Reduced Dsbl
          Length = 195

 Score = 29.6 bits (65), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 7/51 (13%)

Query: 108 KVGVEGAAEFLDDPNSGLNE--VHEELKKYSAN-----ISGVPHFVLNGKH 151
           K G++ A     D  + L E  V E L+K+ A+     I GVP +V+NGK+
Sbjct: 122 KTGLDAAGMSQADFEAALKEPAVQETLEKWKASYDVAKIQGVPAYVVNGKY 172


>pdb|3L9U|A Chain A, Crystal Structure Of Salmonella Enterica Serovar
           Typhimurium Dsbl
          Length = 201

 Score = 28.5 bits (62), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%)

Query: 108 KVGVEGAAEFLDDPNSGLNE--VHEELKKYSA-----NISGVPHFVLNGKH 151
           K G++ A     D  + L +  V E L+K+ A      I GVP +V+NGK+
Sbjct: 127 KTGLDAAGMSQADFEAALKDPAVQETLEKWKAAYDVAKIQGVPAYVVNGKY 177


>pdb|3NZT|A Chain A, 2.0 Angstrom Crystal Structure Of Glutamate--Cysteine
           Ligase (Gsha) Ftom Francisella Tularensis In Complex
           With Amp
          Length = 525

 Score = 27.7 bits (60), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 10  LNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR-GLGLEY 51
           LN S P    N  D  E  FGS N G   RM  V+R GL   Y
Sbjct: 112 LNTSMPLSA-NDNDIQEADFGSSNSG---RMKRVYRKGLSARY 150


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.138    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,711,632
Number of Sequences: 62578
Number of extensions: 244536
Number of successful extensions: 591
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 586
Number of HSP's gapped (non-prelim): 15
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)