BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030793
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P39598|YWBO_BACSU Uncharacterized protein YwbO OS=Bacillus subtilis (strain 168)
GN=ywbO PE=4 SV=1
Length = 200
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 20/171 (11%)
Query: 3 LRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLD 62
+ W PF L PS P ++ + ++ Q I M E LG+E N ++ +
Sbjct: 34 VEWMPFELRPS-PSPQLDPVNDPSKQYMWQTS--IQPMAE---KLGVEINFPNVSPHPYT 87
Query: 63 SHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAA------- 115
+ +K H +F +F + + IGD + L + A +VG++GA+
Sbjct: 88 DLAFEGFHFAKEYNKGHEYNTRVFQAFFQEDQNIGDIDILTKLAEEVGLDGASFKSALET 147
Query: 116 -EFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRA 165
+ D L +EE A+I+ VP F++ G + G +V+ +A
Sbjct: 148 RTYQDVQRQALKHAYEE-----ADITAVPTFII-GDTVIPGAAGKDVFEKA 192
>sp|Q92JI7|DEF2_RICCN Peptide deformylase 2 OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=def2 PE=3 SV=2
Length = 202
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 21/111 (18%)
Query: 4 RWHP---------FFLNPSAPKEGVNKKDFYENKFGSQN-QGIIARMTEVFRGLGLEYNM 53
+WHP ++NPS G++K + YE F +N G +AR ++ Y+
Sbjct: 87 KWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENATGPVARFKKI------HYHA 140
Query: 54 SGLTGNTLDSHRLLYLAG--QQGLDKQHNLAEELFLGYFTQGKYIGDKEFL 102
+ GN + +LA Q +D +L ++FL Y K + +E+L
Sbjct: 141 YDINGNQIQGIAEGFLARVIQHEID---HLNGKVFLDYVAPKKIMTKEEYL 188
>sp|A6UKC3|KATG_SINMW Catalase-peroxidase OS=Sinorhizobium medicae (strain WSM419)
GN=katG PE=3 SV=1
Length = 729
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 37 IARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGK 94
+AR+ V G+ ++N S G + L+ LAG G++K A + + FT G+
Sbjct: 502 LARVLSVLEGIQRDFNASQAGGKKISLADLIVLAGNAGVEKAARAAGQEIIVPFTPGR 559
>sp|B2TK70|OBG_CLOBB GTPase obg OS=Clostridium botulinum (strain Eklund 17B / Type B)
GN=obg PE=3 SV=1
Length = 428
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 94 KYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHEL 153
K+I LV G+EG F D +++EELKKYS + P V+ K +L
Sbjct: 232 KHIERTRLLVHIVDISGIEGREPFED-----FVKINEELKKYSVKLWDRPQIVVANKSDL 286
>sp|Q2PZL6|FAT4_MOUSE Protocadherin Fat 4 OS=Mus musculus GN=Fat4 PE=1 SV=2
Length = 4981
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 10 LNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEY-NMSGLTGNTLDSHRLLY 68
++ + P EG N + FY K S+ I A E+F L+Y N+SG + ++ H +
Sbjct: 2896 VSATDPDEGSNGQVFYFIKSQSEYFRINATTGEIFNKQVLKYQNVSGFSNVNINRHSFIV 2955
Query: 69 LAGQQG 74
A +G
Sbjct: 2956 TASDRG 2961
>sp|A6LQR9|OBG_CLOB8 GTPase obg OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB
8052) GN=obg PE=3 SV=1
Length = 430
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 94 KYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHEL 153
++I L+ GVEG DP +++EELKKYS + P V+ K ++
Sbjct: 232 RHIERTRLLIHIVDISGVEGR-----DPFEDFIKINEELKKYSVKLWDRPQIVVANKSDM 286
>sp|B2UQ30|OBG_AKKM8 GTPase obg OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=obg
PE=3 SV=2
Length = 350
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 16/101 (15%)
Query: 61 LDSHRLLYLAGQQGL-DKQHN---LAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE 116
DS R +A G+ + HN L E FL + T+ K + F+++ A G EG
Sbjct: 219 FDSFRRCVVADIPGIIEGAHNNRGLGHE-FLRHITRCKVL---VFVLDMA---GSEGR-- 269
Query: 117 FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ 157
DP L + E+K YS +++ P FV+ K +L G +
Sbjct: 270 ---DPIEDLQNLRTEIKLYSEDLAKQPWFVVANKMDLEGAE 307
>sp|Q9Y5G1|PCDGF_HUMAN Protocadherin gamma-B3 OS=Homo sapiens GN=PCDHGB3 PE=2 SV=3
Length = 929
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 109 VGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRA 165
G A E DP+ G+N L++Y +S PHF L K L G + PE+ L+A
Sbjct: 148 TGATFALESAQDPDVGVNS----LQQYY--LSPDPHFSLIQKENLDGSRYPELVLKA 198
>sp|Q5R7R9|SNW1_PONAB SNW domain-containing protein 1 OS=Pongo abelii GN=SNW1 PE=2 SV=1
Length = 536
Score = 30.0 bits (66), Expect = 7.2, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 94 KYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSAN 138
+++ DKEF R+ G EG +F +DP GL++ EE K++ +
Sbjct: 471 RFVPDKEFSGSDRRQRGREGPVQFEEDP-FGLDKFLEEAKQHGGS 514
>sp|Q13573|SNW1_HUMAN SNW domain-containing protein 1 OS=Homo sapiens GN=SNW1 PE=1 SV=1
Length = 536
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 94 KYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSAN 138
+++ DKEF R+ G EG +F +DP GL++ EE K++ +
Sbjct: 471 RFVPDKEFSGSDRRQRGREGPVQFEEDP-FGLDKFLEEAKQHGGS 514
>sp|Q1JQE0|SNW1_BOVIN SNW domain-containing protein 1 OS=Bos taurus GN=SNW1 PE=2 SV=1
Length = 536
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 94 KYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSAN 138
+++ DKEF R+ G EG +F +DP GL++ EE K++ +
Sbjct: 471 RFVPDKEFSGSDRRQRGREGPVQFEEDP-FGLDKFLEEAKQHGGS 514
>sp|B2V0A8|OBG_CLOBA GTPase obg OS=Clostridium botulinum (strain Alaska E43 / Type E3)
GN=obg PE=3 SV=1
Length = 428
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 94 KYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHEL 153
K+I LV G+EG F D +++EELKKYS + P V+ K +L
Sbjct: 232 KHIERTRLLVHIVDISGLEGREPFED-----FVKINEELKKYSVKLWDRPQIVVANKSDL 286
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,086,199
Number of Sequences: 539616
Number of extensions: 3074459
Number of successful extensions: 7405
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 7400
Number of HSP's gapped (non-prelim): 18
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)