Query 030793
Match_columns 171
No_of_seqs 169 out of 1337
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:39:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2761 FrnE Predicted dithiol 100.0 1.1E-36 2.5E-41 224.6 18.2 168 1-170 39-213 (225)
2 cd03024 DsbA_FrnE DsbA family, 100.0 1E-31 2.2E-36 199.1 19.4 164 1-167 32-201 (201)
3 cd03022 DsbA_HCCA_Iso DsbA fam 100.0 5.3E-28 1.2E-32 177.8 12.6 159 1-166 28-191 (192)
4 PF01323 DSBA: DSBA-like thior 100.0 3.8E-28 8.2E-33 178.6 11.0 159 1-167 30-193 (193)
5 cd03021 DsbA_GSTK DsbA family, 99.9 3.4E-27 7.4E-32 176.2 12.8 161 1-166 30-208 (209)
6 COG3917 NahD 2-hydroxychromene 99.9 3.8E-24 8.3E-29 151.0 11.9 160 2-167 38-201 (203)
7 cd03025 DsbA_FrnE_like DsbA fa 99.8 1.2E-18 2.7E-23 128.1 14.7 138 1-150 32-178 (193)
8 cd03019 DsbA_DsbA DsbA family, 99.7 3.6E-16 7.7E-21 113.4 12.3 133 19-155 17-157 (178)
9 COG3531 Predicted protein-disu 99.7 4.2E-15 9.1E-20 107.0 13.2 138 32-170 52-209 (212)
10 cd03023 DsbA_Com1_like DsbA fa 99.6 4.9E-15 1.1E-19 104.7 12.0 136 24-167 12-154 (154)
11 PF13743 Thioredoxin_5: Thiore 99.6 4.6E-15 9.9E-20 108.0 9.0 105 58-163 62-175 (176)
12 PRK10954 periplasmic protein d 99.6 1.6E-14 3.5E-19 107.7 11.5 145 20-169 40-203 (207)
13 PF13462 Thioredoxin_4: Thiore 99.1 6.7E-10 1.4E-14 79.1 8.5 135 23-168 18-162 (162)
14 COG1651 DsbG Protein-disulfide 98.9 1.6E-08 3.5E-13 77.0 8.9 146 23-171 90-244 (244)
15 PRK11657 dsbG disulfide isomer 98.1 5.5E-06 1.2E-10 63.6 6.0 119 24-168 124-250 (251)
16 cd02972 DsbA_family DsbA famil 97.9 0.00013 2.9E-09 46.6 7.7 73 32-149 11-91 (98)
17 PRK10877 protein disulfide iso 97.5 0.00016 3.5E-09 54.9 5.2 43 127-170 187-231 (232)
18 TIGR00411 redox_disulf_1 small 97.4 0.00026 5.7E-09 44.3 4.3 35 135-169 47-81 (82)
19 cd03020 DsbA_DsbC_DsbG DsbA fa 97.3 0.0014 3.1E-08 48.3 7.8 40 127-166 157-197 (197)
20 PF13192 Thioredoxin_3: Thiore 97.1 0.00076 1.6E-08 42.0 3.4 33 135-167 43-76 (76)
21 TIGR00412 redox_disulf_2 small 96.3 0.0039 8.4E-08 38.8 2.9 57 100-166 18-75 (76)
22 cd03026 AhpF_NTD_C TRX-GRX-lik 96.2 0.0067 1.5E-07 39.0 3.5 29 135-163 59-87 (89)
23 PRK11509 hydrogenase-1 operon 96.1 0.014 3E-07 40.5 4.7 36 135-170 85-124 (132)
24 PF13098 Thioredoxin_2: Thiore 95.9 0.0091 2E-07 39.5 3.2 32 135-166 76-112 (112)
25 cd03065 PDI_b_Calsequestrin_N 95.1 0.045 9.8E-07 37.3 4.5 36 135-170 81-119 (120)
26 PF07511 DUF1525: Protein of u 94.4 0.11 2.3E-06 35.1 4.8 35 135-169 77-111 (114)
27 COG2143 Thioredoxin-related pr 94.3 0.063 1.4E-06 38.1 3.6 36 134-169 108-148 (182)
28 TIGR02196 GlrX_YruB Glutaredox 94.3 0.055 1.2E-06 32.4 3.0 29 136-166 45-73 (74)
29 TIGR03757 conj_TIGR03757 integ 94.1 0.14 3E-06 34.4 4.8 34 135-168 78-111 (113)
30 cd02975 PfPDO_like_N Pyrococcu 93.9 0.12 2.5E-06 34.6 4.2 36 135-170 69-110 (113)
31 PRK10996 thioredoxin 2; Provis 93.6 0.15 3.3E-06 35.4 4.5 35 135-169 100-138 (139)
32 cd02973 TRX_GRX_like Thioredox 93.6 0.067 1.4E-06 31.9 2.3 21 135-155 46-66 (67)
33 KOG0910 Thioredoxin-like prote 92.9 0.18 3.9E-06 35.6 4.0 37 135-171 109-149 (150)
34 PRK09381 trxA thioredoxin; Pro 92.7 0.3 6.6E-06 32.0 4.7 37 135-171 69-109 (109)
35 TIGR02187 GlrX_arch Glutaredox 92.3 0.17 3.6E-06 37.9 3.3 34 135-168 180-214 (215)
36 cd02950 TxlA TRX-like protein 92.0 0.37 7.9E-06 33.6 4.6 36 135-170 70-110 (142)
37 cd02948 TRX_NDPK TRX domain, T 91.7 0.31 6.8E-06 31.7 3.8 33 135-168 65-101 (102)
38 cd02963 TRX_DnaJ TRX domain, D 91.6 0.29 6.4E-06 32.5 3.7 34 135-168 73-110 (111)
39 PHA02278 thioredoxin-like prot 91.6 0.33 7E-06 32.0 3.8 31 135-165 66-100 (103)
40 PF00085 Thioredoxin: Thioredo 91.5 0.52 1.1E-05 30.1 4.7 34 135-168 65-102 (103)
41 cd02951 SoxW SoxW family; SoxW 91.2 0.35 7.6E-06 32.6 3.8 36 135-170 78-119 (125)
42 TIGR02200 GlrX_actino Glutared 91.0 0.93 2E-05 27.3 5.3 62 101-167 15-76 (77)
43 TIGR01068 thioredoxin thioredo 90.9 0.5 1.1E-05 30.0 4.2 35 135-169 62-100 (101)
44 TIGR02181 GRX_bact Glutaredoxi 90.8 0.8 1.7E-05 28.1 4.9 58 100-163 13-70 (79)
45 cd03418 GRX_GRXb_1_3_like Glut 90.7 1 2.2E-05 27.2 5.3 57 100-162 14-71 (75)
46 cd02965 HyaE HyaE family; HyaE 90.6 0.42 9E-06 32.1 3.6 29 135-163 77-109 (111)
47 TIGR03143 AhpF_homolog putativ 90.3 0.33 7.2E-06 41.6 3.6 32 135-166 523-554 (555)
48 cd02956 ybbN ybbN protein fami 90.0 0.52 1.1E-05 30.0 3.6 32 135-166 60-95 (96)
49 cd02949 TRX_NTR TRX domain, no 89.6 0.51 1.1E-05 30.3 3.3 32 135-166 61-96 (97)
50 cd03000 PDI_a_TMX3 PDIa family 89.5 0.73 1.6E-05 29.9 4.1 35 135-169 66-103 (104)
51 COG0695 GrxC Glutaredoxin and 89.3 1.6 3.5E-05 27.3 5.3 58 103-164 18-75 (80)
52 PRK15412 thiol:disulfide inter 89.2 0.74 1.6E-05 33.5 4.3 64 98-170 108-176 (185)
53 TIGR02194 GlrX_NrdH Glutaredox 89.0 1.6 3.5E-05 26.3 5.2 57 101-164 14-70 (72)
54 PRK11200 grxA glutaredoxin 1; 88.9 0.55 1.2E-05 29.5 3.1 23 136-159 53-75 (85)
55 TIGR02180 GRX_euk Glutaredoxin 88.9 1.4 3.1E-05 27.0 5.0 54 101-157 14-69 (84)
56 PF00462 Glutaredoxin: Glutare 88.8 1 2.2E-05 26.1 4.0 46 101-151 14-59 (60)
57 cd03027 GRX_DEP Glutaredoxin ( 88.6 0.62 1.3E-05 28.3 3.0 54 100-159 15-68 (73)
58 TIGR02187 GlrX_arch Glutaredox 88.3 0.84 1.8E-05 34.0 4.2 35 135-169 71-110 (215)
59 TIGR01126 pdi_dom protein disu 88.1 0.96 2.1E-05 28.8 3.9 35 135-169 63-101 (102)
60 PHA02125 thioredoxin-like prot 87.9 0.84 1.8E-05 27.9 3.3 31 135-166 40-73 (75)
61 cd02953 DsbDgamma DsbD gamma f 87.6 0.59 1.3E-05 30.3 2.6 33 135-167 66-104 (104)
62 cd02947 TRX_family TRX family; 87.0 1.1 2.3E-05 27.5 3.5 32 135-166 57-92 (93)
63 TIGR00385 dsbE periplasmic pro 86.8 1.3 2.9E-05 31.7 4.4 63 99-170 104-171 (173)
64 cd02958 UAS UAS family; UAS is 86.5 1.5 3.2E-05 29.1 4.2 36 135-170 70-111 (114)
65 cd02976 NrdH NrdH-redoxin (Nrd 86.4 2.9 6.3E-05 24.5 5.2 57 101-164 15-71 (73)
66 PRK15317 alkyl hydroperoxide r 85.9 1 2.2E-05 38.3 3.8 34 135-168 163-196 (517)
67 cd02996 PDI_a_ERp44 PDIa famil 85.8 1 2.2E-05 29.4 3.1 30 135-164 72-106 (108)
68 PHA03050 glutaredoxin; Provisi 85.7 2.2 4.8E-05 28.3 4.6 58 101-161 28-88 (108)
69 cd02985 TRX_CDSP32 TRX family, 85.7 1.5 3.3E-05 28.5 3.8 32 135-167 65-100 (103)
70 TIGR02189 GlrX-like_plant Glut 85.5 2.9 6.2E-05 27.2 5.1 58 101-161 23-80 (99)
71 cd02997 PDI_a_PDIR PDIa family 85.4 1.1 2.5E-05 28.6 3.1 31 135-165 69-103 (104)
72 TIGR03140 AhpF alkyl hydropero 85.1 1.2 2.6E-05 37.8 3.9 35 135-169 164-198 (515)
73 cd03028 GRX_PICOT_like Glutare 84.9 2.6 5.6E-05 26.8 4.6 55 100-161 27-82 (90)
74 PF00356 LacI: Bacterial regul 84.7 2.3 5E-05 23.7 3.7 33 102-134 2-36 (46)
75 PRK10329 glutaredoxin-like pro 84.6 6.4 0.00014 24.5 6.2 59 101-167 16-74 (81)
76 cd02994 PDI_a_TMX PDIa family, 84.6 1.7 3.7E-05 27.8 3.7 33 135-167 65-100 (101)
77 TIGR00365 monothiol glutaredox 83.3 3.7 8.1E-05 26.6 4.9 56 100-162 31-87 (97)
78 TIGR01295 PedC_BrcD bacterioci 82.8 2.3 5E-05 28.8 3.9 31 136-166 85-120 (122)
79 PRK10638 glutaredoxin 3; Provi 82.1 4.3 9.3E-05 25.2 4.7 54 101-160 17-70 (83)
80 cd03002 PDI_a_MPD1_like PDI fa 81.5 2.3 5E-05 27.5 3.4 32 135-166 68-108 (109)
81 cd03029 GRX_hybridPRX5 Glutare 80.4 0.99 2.1E-05 27.2 1.2 21 136-157 45-65 (72)
82 cd03031 GRX_GRX_like Glutaredo 80.4 4.5 9.7E-05 28.5 4.7 57 100-161 20-79 (147)
83 PRK00293 dipZ thiol:disulfide 80.3 2.6 5.6E-05 36.4 4.1 37 135-171 528-571 (571)
84 cd03419 GRX_GRXh_1_2_like Glut 80.1 5.6 0.00012 24.2 4.7 56 100-158 14-69 (82)
85 cd03005 PDI_a_ERp46 PDIa famil 80.1 2.3 5.1E-05 27.0 3.1 31 135-165 67-101 (102)
86 COG5494 Predicted thioredoxin/ 79.9 2.3 5E-05 31.8 3.1 33 135-167 53-85 (265)
87 cd02998 PDI_a_ERp38 PDIa famil 79.1 2.3 5E-05 27.1 2.8 30 135-164 69-103 (105)
88 TIGR02183 GRXA Glutaredoxin, G 78.8 1.7 3.7E-05 27.4 2.0 23 138-161 54-76 (86)
89 cd03004 PDI_a_ERdj5_C PDIa fam 78.6 2.7 5.8E-05 27.0 3.0 30 135-164 67-102 (104)
90 cd02991 UAS_ETEA UAS family, E 77.2 5.7 0.00012 26.7 4.3 36 135-170 70-113 (116)
91 cd02954 DIM1 Dim1 family; Dim1 76.9 5.1 0.00011 27.0 3.9 35 135-169 62-110 (114)
92 cd03003 PDI_a_ERdj5_N PDIa fam 76.6 3.6 7.9E-05 26.3 3.2 30 135-164 66-99 (101)
93 cd02999 PDI_a_ERp44_like PDIa 76.6 3.6 7.7E-05 26.7 3.1 30 135-164 66-98 (100)
94 PTZ00062 glutaredoxin; Provisi 76.4 5.3 0.00011 29.8 4.3 32 136-168 57-92 (204)
95 cd03007 PDI_a_ERp29_N PDIa fam 76.4 4.7 0.0001 27.2 3.7 34 135-168 72-114 (116)
96 cd02066 GRX_family Glutaredoxi 74.3 6.8 0.00015 22.7 3.7 51 100-156 14-64 (72)
97 COG3084 Uncharacterized protei 73.7 6.5 0.00014 24.3 3.4 34 80-114 8-41 (88)
98 TIGR02190 GlrX-dom Glutaredoxi 73.6 2.4 5.2E-05 26.1 1.6 52 101-159 23-74 (79)
99 TIGR02742 TrbC_Ftype type-F co 72.5 5.5 0.00012 27.5 3.3 27 36-62 13-39 (130)
100 cd02961 PDI_a_family Protein D 72.4 4.3 9.4E-05 25.2 2.7 30 135-164 65-99 (101)
101 cd02984 TRX_PICOT TRX domain, 71.7 5.3 0.00012 25.1 3.0 31 135-166 62-96 (97)
102 COG3118 Thioredoxin domain-con 71.3 6.2 0.00013 31.2 3.7 35 135-169 91-129 (304)
103 PF06953 ArsD: Arsenical resis 71.2 11 0.00025 25.7 4.6 32 135-166 66-98 (123)
104 cd03001 PDI_a_P5 PDIa family, 70.0 8.6 0.00019 24.3 3.8 30 135-164 66-100 (103)
105 PF09673 TrbC_Ftype: Type-F co 69.5 6.2 0.00013 26.4 3.0 28 36-63 12-39 (113)
106 cd03006 PDI_a_EFP1_N PDIa fami 69.4 6.3 0.00014 26.3 3.0 29 136-164 79-111 (113)
107 KOG0907 Thioredoxin [Posttrans 68.8 7.5 0.00016 25.7 3.2 33 135-168 68-104 (106)
108 KOG1752 Glutaredoxin and relat 68.7 17 0.00037 24.0 4.9 56 101-159 29-84 (104)
109 PF05819 NolX: NolX protein; 68.2 23 0.00051 30.1 6.5 84 77-167 452-543 (624)
110 cd03030 GRX_SH3BGR Glutaredoxi 67.3 19 0.0004 23.2 4.8 56 101-161 21-79 (92)
111 PRK14018 trifunctional thiored 66.8 11 0.00024 32.3 4.6 35 135-169 133-172 (521)
112 PTZ00443 Thioredoxin domain-co 66.5 13 0.00027 28.2 4.4 34 135-168 100-137 (224)
113 cd03011 TlpA_like_ScsD_MtbDsbE 65.9 9.2 0.0002 25.2 3.3 58 98-165 60-121 (123)
114 TIGR02740 TraF-like TraF-like 65.8 10 0.00022 29.6 3.9 72 99-170 185-264 (271)
115 PRK03147 thiol-disulfide oxido 65.4 14 0.0003 26.0 4.3 63 98-170 105-172 (173)
116 smart00594 UAS UAS domain. 65.2 8.9 0.00019 25.7 3.2 32 135-166 80-121 (122)
117 PRK10824 glutaredoxin-4; Provi 64.1 25 0.00054 23.7 5.1 54 101-161 35-89 (115)
118 TIGR02738 TrbB type-F conjugat 64.0 13 0.00029 26.3 3.9 32 138-169 115-152 (153)
119 KOG0908 Thioredoxin-like prote 63.6 13 0.00029 28.7 4.0 34 135-169 68-105 (288)
120 cd02955 SSP411 TRX domain, SSP 62.7 18 0.00038 24.6 4.2 12 136-147 75-86 (124)
121 PTZ00102 disulphide isomerase; 60.4 17 0.00036 30.2 4.6 35 135-169 100-137 (477)
122 TIGR01626 ytfJ_HI0045 conserve 58.6 19 0.00041 26.4 4.0 32 136-167 140-177 (184)
123 TIGR01130 ER_PDI_fam protein d 57.2 19 0.00041 29.6 4.3 35 135-169 69-108 (462)
124 COG1393 ArsC Arsenate reductas 57.0 24 0.00051 23.8 4.0 39 36-74 13-51 (117)
125 PTZ00256 glutathione peroxidas 56.7 21 0.00046 25.7 4.1 35 137-171 140-182 (183)
126 cd02982 PDI_b'_family Protein 56.1 20 0.00044 22.6 3.5 35 135-169 60-102 (103)
127 PRK13730 conjugal transfer pil 55.9 18 0.00039 27.0 3.5 33 135-167 156-191 (212)
128 PLN02412 probable glutathione 55.8 25 0.00055 24.9 4.3 33 138-170 127-164 (167)
129 PTZ00062 glutaredoxin; Provisi 55.3 31 0.00067 25.7 4.8 57 100-163 132-189 (204)
130 cd03010 TlpA_like_DsbE TlpA-li 54.2 16 0.00034 24.3 2.9 56 98-162 66-126 (127)
131 PTZ00051 thioredoxin; Provisio 53.9 8.5 0.00018 24.2 1.4 28 135-163 65-96 (98)
132 PRK12759 bifunctional gluaredo 53.7 29 0.00062 28.8 4.8 57 102-160 18-78 (410)
133 COG1905 NuoE NADH:ubiquinone o 51.9 25 0.00055 25.2 3.6 30 139-170 128-157 (160)
134 cd02995 PDI_a_PDI_a'_C PDIa fa 50.7 19 0.0004 22.7 2.7 29 136-164 68-102 (104)
135 cd02992 PDI_a_QSOX PDIa family 50.4 9 0.00019 25.4 1.1 13 135-147 72-84 (114)
136 PF06200 tify: tify domain; I 49.6 39 0.00084 17.8 3.9 28 144-171 9-36 (36)
137 PTZ00102 disulphide isomerase; 49.6 25 0.00055 29.2 3.9 35 136-170 426-465 (477)
138 PF06764 DUF1223: Protein of u 47.8 30 0.00065 25.8 3.6 27 142-169 71-97 (202)
139 PLN00410 U5 snRNP protein, DIM 47.5 40 0.00086 23.6 4.1 35 136-170 72-120 (142)
140 COG3019 Predicted metal-bindin 47.0 26 0.00055 24.6 2.9 63 100-168 40-102 (149)
141 COG4232 Thiol:disulfide interc 46.6 36 0.00079 29.5 4.4 36 135-170 528-568 (569)
142 cd02986 DLP Dim1 family, Dim1- 46.0 31 0.00068 23.2 3.2 35 135-169 62-110 (114)
143 cd02957 Phd_like Phosducin (Ph 44.4 15 0.00033 24.1 1.6 16 135-150 70-87 (113)
144 KOG2824 Glutaredoxin-related p 42.7 31 0.00068 26.9 3.1 58 101-160 152-209 (281)
145 PHA01083 hypothetical protein 41.8 79 0.0017 22.3 4.8 25 90-114 36-61 (149)
146 PF07293 DUF1450: Protein of u 41.6 49 0.0011 20.7 3.3 28 140-169 44-71 (78)
147 PF00046 Homeobox: Homeobox do 41.4 39 0.00084 19.0 2.8 30 84-114 13-42 (57)
148 PLN02919 haloacid dehalogenase 41.1 46 0.001 31.2 4.5 35 136-170 497-536 (1057)
149 COG3634 AhpF Alkyl hydroperoxi 40.9 23 0.00049 29.1 2.2 32 136-167 164-195 (520)
150 PF04214 DUF411: Protein of un 40.3 51 0.0011 20.2 3.2 31 137-168 21-51 (70)
151 cd03082 TRX_Fd_NuoE_W_FDH_beta 39.7 46 0.00099 20.2 3.0 26 140-167 45-70 (72)
152 cd02959 ERp19 Endoplasmic reti 38.7 14 0.00029 24.7 0.6 33 136-168 69-111 (117)
153 TIGR01481 ccpA catabolite cont 38.7 44 0.00095 26.0 3.6 32 101-132 3-36 (329)
154 cd00086 homeodomain Homeodomai 38.6 72 0.0016 17.7 4.3 31 83-114 12-42 (59)
155 cd02989 Phd_like_TxnDC9 Phosdu 38.5 22 0.00047 23.5 1.6 16 135-150 69-86 (113)
156 PRK13669 hypothetical protein; 38.2 63 0.0014 20.2 3.4 29 140-170 44-72 (78)
157 cd03081 TRX_Fd_NuoE_FDH_gamma 37.8 48 0.0011 20.4 3.0 27 140-168 53-79 (80)
158 PHA01976 helix-turn-helix prot 37.4 51 0.0011 19.1 3.0 25 90-114 35-59 (67)
159 TIGR02661 MauD methylamine deh 37.0 81 0.0017 22.8 4.5 62 97-169 113-178 (189)
160 PRK10727 DNA-binding transcrip 36.9 47 0.001 26.1 3.5 32 101-132 3-36 (343)
161 TIGR02540 gpx7 putative glutat 36.7 63 0.0014 22.3 3.8 30 140-169 114-152 (153)
162 PF13905 Thioredoxin_8: Thiore 36.3 25 0.00054 21.9 1.6 44 97-147 45-88 (95)
163 COG1440 CelA Phosphotransferas 36.1 35 0.00076 22.5 2.2 25 30-54 55-79 (102)
164 TIGR02739 TraF type-F conjugat 35.9 2.1E+02 0.0045 22.2 7.4 91 77-170 140-248 (256)
165 smart00354 HTH_LACI helix_turn 35.7 92 0.002 18.5 4.0 29 102-130 3-33 (70)
166 PRK09526 lacI lac repressor; R 35.1 56 0.0012 25.5 3.7 32 101-132 7-40 (342)
167 PF06288 DUF1040: Protein of u 35.0 46 0.00099 21.0 2.4 35 79-114 7-41 (86)
168 TIGR00424 APS_reduc 5'-adenyly 34.6 63 0.0014 27.4 4.0 35 135-169 422-462 (463)
169 PF07449 HyaE: Hydrogenase-1 e 34.4 51 0.0011 21.9 2.8 26 135-160 76-105 (107)
170 PRK05988 formate dehydrogenase 34.2 75 0.0016 22.6 3.8 30 140-171 127-156 (156)
171 cd02983 P5_C P5 family, C-term 34.0 83 0.0018 21.4 4.0 35 136-170 74-115 (130)
172 PF00352 TBP: Transcription fa 33.6 41 0.00089 21.1 2.2 23 148-170 57-79 (86)
173 PRK09492 treR trehalose repres 32.9 63 0.0014 24.9 3.6 32 101-132 6-39 (315)
174 KOG0070 GTP-binding ADP-ribosy 32.7 92 0.002 22.8 4.1 29 139-167 116-144 (181)
175 PRK10014 DNA-binding transcrip 32.2 69 0.0015 25.0 3.8 33 100-132 7-41 (342)
176 PRK13728 conjugal transfer pro 32.2 98 0.0021 22.6 4.2 35 136-170 129-171 (181)
177 PRK14987 gluconate operon tran 31.9 66 0.0014 25.1 3.6 33 101-133 7-41 (331)
178 PTZ00056 glutathione peroxidas 31.8 2.1E+02 0.0045 21.0 9.1 72 97-170 89-178 (199)
179 PRK10703 DNA-binding transcrip 31.3 63 0.0014 25.3 3.4 33 101-133 3-37 (341)
180 COG3800 Predicted transcriptio 30.5 1.4E+02 0.003 23.9 5.0 45 101-148 141-188 (332)
181 TIGR01616 nitro_assoc nitrogen 30.3 1.5E+02 0.0032 20.2 4.7 36 39-74 16-51 (126)
182 cd02969 PRX_like1 Peroxiredoxi 30.1 1.1E+02 0.0025 21.4 4.3 63 98-170 76-152 (171)
183 KOG0190 Protein disulfide isom 29.5 70 0.0015 27.3 3.5 34 135-168 93-130 (493)
184 cd01659 TRX_superfamily Thiore 29.4 35 0.00076 18.1 1.3 15 135-149 47-61 (69)
185 PRK10401 DNA-binding transcrip 29.4 86 0.0019 24.6 3.9 32 101-132 3-36 (346)
186 PRK10423 transcriptional repre 29.2 65 0.0014 24.9 3.2 31 102-132 1-33 (327)
187 PF10555 MraY_sig1: Phospho-N- 29.0 22 0.00048 14.2 0.2 6 140-145 2-7 (13)
188 PF14338 Mrr_N: Mrr N-terminal 28.8 1.5E+02 0.0033 18.6 4.5 37 78-114 2-38 (92)
189 TIGR02405 trehalos_R_Ecol treh 28.3 87 0.0019 24.2 3.7 32 101-132 3-36 (311)
190 cd03032 ArsC_Spx Arsenate Redu 27.8 1.8E+02 0.0039 19.1 4.9 34 40-73 16-49 (115)
191 cd02993 PDI_a_APS_reductase PD 27.8 40 0.00088 21.8 1.5 29 136-164 73-107 (109)
192 PF04487 CITED: CITED; InterP 27.7 30 0.00064 26.0 0.9 21 94-114 164-184 (214)
193 KOG3160 Gamma-interferon induc 27.5 2E+02 0.0044 21.8 5.3 53 97-150 132-189 (220)
194 TIGR03070 couple_hipB transcri 27.4 1E+02 0.0022 16.8 3.0 23 90-112 35-57 (58)
195 cd03008 TryX_like_RdCVF Trypar 27.3 1.1E+02 0.0025 21.3 3.8 43 98-147 76-118 (146)
196 TIGR01501 MthylAspMutase methy 27.3 2.1E+02 0.0047 19.7 5.8 68 79-150 18-91 (134)
197 cd03033 ArsC_15kD Arsenate Red 26.9 1.7E+02 0.0037 19.4 4.4 17 40-56 16-32 (113)
198 cd02987 Phd_like_Phd Phosducin 26.4 43 0.00094 24.1 1.6 16 135-150 129-146 (175)
199 PF11869 DUF3389: Protein of u 26.4 69 0.0015 19.8 2.2 20 94-113 55-74 (75)
200 COG0422 ThiC Thiamine biosynth 26.3 2.5E+02 0.0054 23.4 5.8 52 117-169 261-313 (432)
201 PF14595 Thioredoxin_9: Thiore 26.3 63 0.0014 22.1 2.3 31 136-167 92-126 (129)
202 COG1609 PurR Transcriptional r 26.2 95 0.0021 24.7 3.6 32 101-132 2-35 (333)
203 smart00389 HOX Homeodomain. DN 25.8 1.2E+02 0.0027 16.5 4.3 31 83-114 12-42 (56)
204 PF01257 2Fe-2S_thioredx: Thio 25.6 62 0.0013 22.5 2.2 27 141-169 118-144 (145)
205 cd03009 TryX_like_TryX_NRX Try 25.2 50 0.0011 22.0 1.6 13 135-147 93-105 (131)
206 TIGR02417 fruct_sucro_rep D-fr 24.9 1.2E+02 0.0025 23.6 3.9 31 102-132 2-37 (327)
207 PLN00062 TATA-box-binding prot 24.8 1.1E+02 0.0025 22.2 3.5 22 148-169 146-167 (179)
208 TIGR01565 homeo_ZF_HD homeobox 24.5 1.5E+02 0.0033 17.3 3.3 18 97-114 30-47 (58)
209 PF01381 HTH_3: Helix-turn-hel 24.4 1.1E+02 0.0024 16.7 2.8 24 91-114 30-53 (55)
210 PRK11303 DNA-binding transcrip 24.3 1.1E+02 0.0024 23.6 3.7 32 101-132 2-38 (328)
211 TIGR00190 thiC thiamine biosyn 24.1 2.5E+02 0.0054 23.5 5.5 52 117-169 260-312 (423)
212 cd02962 TMX2 TMX2 family; comp 24.1 50 0.0011 23.3 1.5 14 137-150 104-119 (152)
213 PF07908 D-aminoacyl_C: D-amin 24.0 71 0.0015 17.7 1.8 16 138-153 16-31 (48)
214 COG0299 PurN Folate-dependent 24.0 3.1E+02 0.0067 20.5 5.6 11 140-150 49-59 (200)
215 PF10668 Phage_terminase: Phag 23.8 1.4E+02 0.0031 17.6 3.1 14 101-114 24-37 (60)
216 cd02960 AGR Anterior Gradient 23.8 1.1E+02 0.0025 21.0 3.2 31 140-170 78-123 (130)
217 COG4839 FtsL Protein required 23.7 62 0.0013 22.0 1.7 21 94-114 91-111 (120)
218 PF12844 HTH_19: Helix-turn-he 23.7 1.1E+02 0.0023 17.5 2.7 25 90-114 32-56 (64)
219 PRK07571 bidirectional hydroge 23.6 1.5E+02 0.0032 21.4 3.9 29 140-170 140-168 (169)
220 cd04516 TBP_eukaryotes eukaryo 23.5 1.2E+02 0.0026 22.0 3.4 22 148-169 146-167 (174)
221 PF04967 HTH_10: HTH DNA bindi 23.4 1.2E+02 0.0026 17.3 2.7 29 82-114 10-38 (53)
222 PRK00394 transcription factor; 23.3 1.1E+02 0.0024 22.3 3.2 23 148-170 147-169 (179)
223 PF13405 EF-hand_6: EF-hand do 23.2 1.1E+02 0.0023 14.8 2.5 28 83-110 3-31 (31)
224 cd02964 TryX_like_family Trypa 23.1 57 0.0012 21.8 1.6 13 135-147 93-105 (132)
225 PF13728 TraF: F plasmid trans 23.0 1.3E+02 0.0028 22.5 3.6 87 77-166 110-214 (215)
226 KOG0496 Beta-galactosidase [Ca 22.8 1.2E+02 0.0026 26.8 3.7 44 126-169 48-100 (649)
227 PLN02309 5'-adenylylsulfate re 22.8 1.3E+02 0.0028 25.5 3.8 34 136-169 417-456 (457)
228 COG2922 Smg Uncharacterized pr 22.8 2.3E+02 0.005 20.0 4.4 35 80-114 3-38 (157)
229 cd04518 TBP_archaea archaeal T 22.8 1.1E+02 0.0024 22.1 3.1 23 148-170 146-168 (174)
230 cd03034 ArsC_ArsC Arsenate Red 22.7 2.1E+02 0.0046 18.7 4.3 35 40-74 15-49 (112)
231 cd00652 TBP_TLF TATA box bindi 22.3 1.1E+02 0.0025 22.0 3.1 23 148-170 55-77 (174)
232 TIGR02049 gshA_ferroox glutama 21.6 4.1E+02 0.0089 22.1 6.2 31 135-165 250-285 (403)
233 COG5429 Uncharacterized secret 21.5 73 0.0016 24.5 1.9 33 136-169 106-140 (261)
234 PRK10339 DNA-binding transcrip 21.5 1.3E+02 0.0027 23.5 3.5 32 101-132 3-38 (327)
235 PRK13352 thiamine biosynthesis 20.8 2.7E+02 0.0059 23.4 5.2 52 117-169 263-315 (431)
236 PRK09726 antitoxin HipB; Provi 20.8 1.6E+02 0.0035 18.3 3.3 25 90-114 45-69 (88)
237 cd04516 TBP_eukaryotes eukaryo 20.8 1.3E+02 0.0029 21.8 3.1 23 148-170 55-77 (174)
238 cd04518 TBP_archaea archaeal T 20.8 1.3E+02 0.0028 21.8 3.1 23 148-170 55-77 (174)
239 PLN00062 TATA-box-binding prot 20.6 1.3E+02 0.0028 21.9 3.1 23 148-170 55-77 (179)
240 cd02952 TRP14_like Human TRX-r 20.5 66 0.0014 21.7 1.4 13 135-147 83-96 (119)
241 PRK00394 transcription factor; 20.4 1.4E+02 0.0029 21.8 3.1 23 148-170 54-76 (179)
242 PRK09284 thiamine biosynthesis 20.4 2.8E+02 0.0061 24.2 5.3 52 117-169 413-465 (607)
243 PF01726 LexA_DNA_bind: LexA D 20.2 2.1E+02 0.0045 17.0 3.5 32 77-112 7-38 (65)
244 PF11672 DUF3268: Protein of u 20.2 2.7E+02 0.0059 18.3 4.4 33 81-114 65-97 (102)
245 PF08534 Redoxin: Redoxin; In 20.1 1.3E+02 0.0028 20.2 2.9 14 100-113 74-87 (146)
246 PF05768 DUF836: Glutaredoxin- 20.0 1.8E+02 0.0038 17.7 3.3 31 136-167 45-81 (81)
No 1
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-36 Score=224.62 Aligned_cols=168 Identities=34% Similarity=0.642 Sum_probs=154.9
Q ss_pred CeEEEeecccCCCCCCCCCCHHHHHHHhhCC--hHHHHHHHHHHHHHhcCCccccCCC--CCCcHHHHHHHHHHHhcCcc
Q 030793 1 MILRWHPFFLNPSAPKEGVNKKDFYENKFGS--QNQGIIARMTEVFRGLGLEYNMSGL--TGNTLDSHRLLYLAGQQGLD 76 (171)
Q Consensus 1 ~~v~~~P~~L~p~~~~~g~~~~~~~~~~~g~--~~~~~~~~~~~~a~~~g~~~~~~~~--~~~s~~a~r~~~~a~~~g~~ 76 (171)
++|+||||+|+|+.+..|.+..+++..+||. ..+.+.+.+++.+...|+.+++... .+||..|||++.||..+|+
T Consensus 39 v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~~~~~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~- 117 (225)
T COG2761 39 VEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHARLEELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGK- 117 (225)
T ss_pred EEEEecccccCCCCCcccccHHHHHHHHhCccHHHHHHHHHHHHhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCc-
Confidence 4799999999999999999999999999994 4477889999999999999999874 6899999999999999996
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeee
Q 030793 77 KQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHEL 153 (171)
Q Consensus 77 ~~~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i 153 (171)
.++++.++||++||.+|+||+|.++|.+||++.|||.+ .+.+.| +.+.+.++++... +++||+||||||++++|.|
T Consensus 118 ~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD~~~~~~~L~s-~~~~~avr~d~~~A~e~gI~gVP~fv~d~~~~V 196 (225)
T COG2761 118 AQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFKADLAS-DAAKDAVRQDEAAAQEMGIRGVPTFVFDGKYAV 196 (225)
T ss_pred hHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhCCCHHHHHHHHhC-hHHHHHHHHHHHHHHHCCCccCceEEEcCcEee
Confidence 69999999999999999999999999999999999997 678888 5788889988775 8999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHh
Q 030793 154 SGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 154 ~G~~~~~~~~~~l~~~~ 170 (171)
+|+++++.|..+|.++.
T Consensus 197 ~Gaq~~~v~~~al~~~~ 213 (225)
T COG2761 197 SGAQPYDVLEDALRQLL 213 (225)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 99999999999999875
No 2
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=100.00 E-value=1e-31 Score=199.07 Aligned_cols=164 Identities=41% Similarity=0.755 Sum_probs=145.5
Q ss_pred CeEEEeecccCCCCCCCCCCHHHHHHHhhCC--hHHHHHHHHHHHHHhcCCccccCCC-CCCcHHHHHHHHHHHhcCcch
Q 030793 1 MILRWHPFFLNPSAPKEGVNKKDFYENKFGS--QNQGIIARMTEVFRGLGLEYNMSGL-TGNTLDSHRLLYLAGQQGLDK 77 (171)
Q Consensus 1 ~~v~~~P~~L~p~~~~~g~~~~~~~~~~~g~--~~~~~~~~~~~~a~~~g~~~~~~~~-~~~s~~a~r~~~~a~~~g~~~ 77 (171)
++|+|+||.|+|+.+.+|+...+++..++|. +..+++.++.++++..|++|+++.. +.+|..|||++.+|+.+| +
T Consensus 32 ~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~gi~~~~~~~~~~~s~~a~~~~~~a~~~~--~ 109 (201)
T cd03024 32 VEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAAAEGLEFDFDRVRPPNTFDAHRLIHLAKEQG--K 109 (201)
T ss_pred eEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCcccCCCCccCCcHHHHHHHHHHhccC--c
Confidence 4799999999999999988777777777764 6778888999999999999999874 569999999999998888 8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeec
Q 030793 78 QHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELS 154 (171)
Q Consensus 78 ~~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~ 154 (171)
..+++++||+++|.+|+++++.++|.++++++|+|.+ .+++++ ++..+.++++.+. .+.||+|||||+|||+|.+.
T Consensus 110 ~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~-~~~~~~~~~~~~~a~~~gv~G~Pt~vv~g~~~~~ 188 (201)
T cd03024 110 QDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLAS-DEYADEVRADEARARQLGISGVPFFVFNGKYAVS 188 (201)
T ss_pred HHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcC-cccchHHHHHHHHHHHCCCCcCCEEEECCeEeec
Confidence 8999999999999999999999999999999999987 567877 4577788887665 78999999999999999999
Q ss_pred cCCCHHHHHHHHH
Q 030793 155 GGQPPEVYLRAFQ 167 (171)
Q Consensus 155 G~~~~~~~~~~l~ 167 (171)
|+++++.|.++|+
T Consensus 189 G~~~~~~~~~~i~ 201 (201)
T cd03024 189 GAQPPEVFLQALR 201 (201)
T ss_pred CCCCHHHHHHHhC
Confidence 9999999998874
No 3
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=99.95 E-value=5.3e-28 Score=177.79 Aligned_cols=159 Identities=19% Similarity=0.306 Sum_probs=132.0
Q ss_pred CeEEEeecccCCCCCCCCCC-HHHHHHHhhCChHHHHHHHHHHHHHhcCCccccCC-CCCCcHHHHHHHHHHHhcCcchH
Q 030793 1 MILRWHPFFLNPSAPKEGVN-KKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSG-LTGNTLDSHRLLYLAGQQGLDKQ 78 (171)
Q Consensus 1 ~~v~~~P~~L~p~~~~~g~~-~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~-~~~~s~~a~r~~~~a~~~g~~~~ 78 (171)
++|+||||+|+|.++..|+. ...... .+..++..++.++++..|++|+++. ++.+|..+|+++.+|+.+| ++.
T Consensus 28 ~~i~~~p~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~s~~a~~~~~~a~~~~-~~~ 102 (192)
T cd03022 28 ATVRYRPILLGGVFKATGNVPPANRPP----AKGRYRLRDLERWARRYGIPLRFPPRFPPNTLRAMRAALAAQAEG-DAA 102 (192)
T ss_pred CeeEEeeeeHHHHHHHhCCCCCccccc----HHHHHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHhCc-hhH
Confidence 57999999999976666542 111111 1567899999999999999999876 4679999999999998877 478
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeecc
Q 030793 79 HNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSG 155 (171)
Q Consensus 79 ~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G 155 (171)
.+++++||+++|.+++++++.++|.+++.++|+|.+ .+.+++ .++.+.++++.+. .+.||+|||||+|||+ .+.|
T Consensus 103 ~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~-~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~-~~~G 180 (192)
T cd03022 103 EAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADELLAAADD-PAVKAALRANTEEAIARGVFGVPTFVVDGE-MFWG 180 (192)
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCCHHHHHHHcCC-HHHHHHHHHHHHHHHHcCCCcCCeEEECCe-eecc
Confidence 999999999999999999999999999999999986 566777 3566777776664 6899999999999998 5789
Q ss_pred CCCHHHHHHHH
Q 030793 156 GQPPEVYLRAF 166 (171)
Q Consensus 156 ~~~~~~~~~~l 166 (171)
..+.+.+...|
T Consensus 181 ~~~l~~~~~~l 191 (192)
T cd03022 181 QDRLDMLEEAL 191 (192)
T ss_pred cccHHHHHHHh
Confidence 99999888765
No 4
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=99.95 E-value=3.8e-28 Score=178.63 Aligned_cols=159 Identities=28% Similarity=0.491 Sum_probs=130.6
Q ss_pred CeEEEeecccCCCCCCCC-CCHHHHHHHhhCChHHHHHHHHHHHHHhcCCccccCCC-CCCcHHHHHHHHHHHhcCcchH
Q 030793 1 MILRWHPFFLNPSAPKEG-VNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGL-TGNTLDSHRLLYLAGQQGLDKQ 78 (171)
Q Consensus 1 ~~v~~~P~~L~p~~~~~g-~~~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~~-~~~s~~a~r~~~~a~~~g~~~~ 78 (171)
++|+|+||.|.|..+..+ .+... .. .+.+++..++.++++.+|++++++.. +.+|..+++++.+++.+| +.
T Consensus 30 ~~i~~~p~~l~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~a~~~gi~~~~~~~~~~~s~~a~~~~~~a~~~~--~~ 102 (193)
T PF01323_consen 30 VEIEWRPFPLRPDMRRSGGAPPAE-DP----AKAEYMFQDLERWARRYGIPFNFPPPFPGNSRPAHRAAYAAQEQG--KA 102 (193)
T ss_dssp CEEEEEEESSSTHHHHCT-SCGCG-SH----HHHHHHHHHHHHHHHHHT--TBTSSTHHHHHHHHHHHHHHHHHHH--HH
T ss_pred CcEEEeccccccccccCCCCCccc-Ch----hHHHHHHHHHHHHHHHhcCcccCCchhhhhhHHHHHHHHHHHHhh--hh
Confidence 579999999999865443 23322 11 17789999999999999999998874 349999999999999999 89
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeecc
Q 030793 79 HNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSG 155 (171)
Q Consensus 79 ~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G 155 (171)
.++++++|+++|.+|+||++.++|.++++++|+|.+ .+.+++ .+..+.++++.+. .++||+|||||+|||++.+.|
T Consensus 103 ~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~~~~~~-~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G 181 (193)
T PF01323_consen 103 DAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFDAALDS-PEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFG 181 (193)
T ss_dssp HHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEES
T ss_pred hHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHHHHhcc-hHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEEC
Confidence 999999999999999999999999999999999987 567777 3566777776665 789999999999999988999
Q ss_pred CCCHHHHHHHHH
Q 030793 156 GQPPEVYLRAFQ 167 (171)
Q Consensus 156 ~~~~~~~~~~l~ 167 (171)
.++.+.|.++|+
T Consensus 182 ~~~~~~l~~~l~ 193 (193)
T PF01323_consen 182 ADRLDELEDALQ 193 (193)
T ss_dssp CSSHHHHHHHH-
T ss_pred CCCHHHHHHHhC
Confidence 999999999875
No 5
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=99.95 E-value=3.4e-27 Score=176.23 Aligned_cols=161 Identities=15% Similarity=0.174 Sum_probs=125.8
Q ss_pred CeEEEeecccCCCCCCCCCCHHHHHHHhhCChHHHHHHHHHHHHHhcCCccccCCC----CCCcHHHHHHHHHHHhcCcc
Q 030793 1 MILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGL----TGNTLDSHRLLYLAGQQGLD 76 (171)
Q Consensus 1 ~~v~~~P~~L~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~~----~~~s~~a~r~~~~a~~~g~~ 76 (171)
++|+||||+|+|.++.+|+..+.... .|..+++.+++++++..|++|++++. +.||..|||++.+|+..|..
T Consensus 30 v~i~~~P~~L~~~~~~~g~~~~~~~~----~k~~~~~~~~~~~a~~~Gl~~~~~~~~~~~~~nt~~a~rl~~~a~~~~~~ 105 (209)
T cd03021 30 VDITYVPVFLGGIMKDSGNKPPIMLP----NKAKYMAKDRKRSAEFFGVPIRQPKDFFFMKKGTLTAQRFLTAISEQHPE 105 (209)
T ss_pred CeEEEEeeehhHHHhccCCCCcccCc----hHHHHHHHHHHHHHHHhCCCCCCCCCCcccCcccHHHHHHHHHHHhhCcc
Confidence 57999999999999888865332221 27899999999999999999999763 48999999999999887732
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCHHH----HHHHHHHcCCchh--Hhhh---cCCCCChHHHHHHHHH-hhCCCCcccEEE
Q 030793 77 KQHNLAEELFLGYFTQGKYIGDKEF----LVECARKVGVEGA--AEFL---DDPNSGLNEVHEELKK-YSANISGVPHFV 146 (171)
Q Consensus 77 ~~~~~~~~l~~a~~~~g~~i~~~~~----L~~ia~~~Gld~~--~~~~---~~~~~~~~~v~~~~~~-~~~gv~gvPtfv 146 (171)
...++.++||+++|.+|.++++..+ |.+++.++|||.+ ..++ ++ .++.++++++.+. .+.||+||||||
T Consensus 106 ~~~~~~~~l~~a~f~~g~~i~~~~~l~~vL~~~a~~~Gld~~~~~~~l~~~~~-~~~~~~l~~~~~~A~~~Gv~GVP~fv 184 (209)
T cd03021 106 STLTALEALFREFWVRPWSLTEPITESQSISVAADKLGGSAEQAEKLLKAAST-PEVKNRLKENTDEALKYGAFGLPWIV 184 (209)
T ss_pred hHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHcCCCcccHHHHHHHccC-HHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 2367999999999999998885555 4799999999864 3455 34 3456777776654 789999999999
Q ss_pred ECC--e--eeeccCCCHHHHHHHH
Q 030793 147 LNG--K--HELSGGQPPEVYLRAF 166 (171)
Q Consensus 147 v~~--~--~~i~G~~~~~~~~~~l 166 (171)
|++ . ..++|....+.+++.|
T Consensus 185 v~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 185 VTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred EEcCCCCccceecCCcHHHHHHHh
Confidence 963 1 4678877777666654
No 6
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=3.8e-24 Score=150.98 Aligned_cols=160 Identities=17% Similarity=0.280 Sum_probs=125.7
Q ss_pred eEEEeecccCCCCCCCCCCHHHHHHHhhCChHHHHHHHHHHHHHhcCCccccCC-CCCCcHHHHHHHHHHHhcCcchHHH
Q 030793 2 ILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSG-LTGNTLDSHRLLYLAGQQGLDKQHN 80 (171)
Q Consensus 2 ~v~~~P~~L~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~-~~~~s~~a~r~~~~a~~~g~~~~~~ 80 (171)
.|.|||.+|+..++.+|+.. +.... +.+..|.+.++.|+++++|+++.+++ ++.|+.-+.|.+.++...| ....+
T Consensus 38 ~v~~rP~llg~vfk~tG~~~-Pl~~~--~~~~dY~~~d~~R~akr~Glp~~f~~~fp~nt~~~~R~~~~~~~~g-~~a~~ 113 (203)
T COG3917 38 AVALRPILLGGVFKATGNGV-PLIKT--PQPGDYITLDLKREAKRHGLPLRFPRHFPPNTLGAARAMIALAMGG-GLAEQ 113 (203)
T ss_pred ceEEEeeeeceeEeecCCCC-ccccc--CCCCceehHHHHHHHHHcCCccccCCCCCCchHHHHHHHHHHHhcc-chHHH
Confidence 58999999999999998632 22221 11357899999999999999998887 6899999999998863332 38999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCC
Q 030793 81 LAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQ 157 (171)
Q Consensus 81 ~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~ 157 (171)
|.++++++.|.++.|+.+++++..++.++|||.+ ...+.+ +++++.++.+.++ .+.||+|+||||++++ ..+|-.
T Consensus 114 ~~~a~lrAlw~d~~~l~epev~~~vA~~aGlDg~al~A~~gd-~eik~~l~a~~~~a~srGvfGaPtfivg~q-~fwGqD 191 (203)
T COG3917 114 FAEAVLRALWADGQNLGEPEVVYAVANAAGLDGAALLALLGD-DEIKARLKANTAEAVSRGVFGAPTFIVGDQ-LFWGQD 191 (203)
T ss_pred HHHHHHHHHhhcccccCChHHHHHHHHHcCCCHHHHHhhcCC-HHHHHHHHhhHHHHHhcCccCCCeEEECCe-eeechh
Confidence 9999999999999999999999999999999987 344444 3455555555554 7899999999999887 456654
Q ss_pred CHHHHHHHHH
Q 030793 158 PPEVYLRAFQ 167 (171)
Q Consensus 158 ~~~~~~~~l~ 167 (171)
....++..+.
T Consensus 192 RL~~lea~L~ 201 (203)
T COG3917 192 RLYQLEAELR 201 (203)
T ss_pred HHHHHHHHHh
Confidence 5556666554
No 7
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=99.81 E-value=1.2e-18 Score=128.08 Aligned_cols=138 Identities=18% Similarity=0.224 Sum_probs=107.4
Q ss_pred CeEEEeecccCCCCCCCCCCHHHHHHHhhCChHHHHHHHHHHHHH-hcCCccccCCC-----CCCcHHHHHHHHHHHhcC
Q 030793 1 MILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR-GLGLEYNMSGL-----TGNTLDSHRLLYLAGQQG 74 (171)
Q Consensus 1 ~~v~~~P~~L~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~a~-~~g~~~~~~~~-----~~~s~~a~r~~~~a~~~g 74 (171)
++|+|+++.|.+.....+.. +..+...++.+.++ ..|++++++.. +.+|..|++++.+|+.++
T Consensus 32 ~~v~~~~~~L~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~s~~a~~~~~aa~~~~ 100 (193)
T cd03025 32 IEVELHLGGLLPGNNARQIT-----------KQWRIYVHWHKARIALTGQPFGEDYLELLLFDLDSAPASRAIKAARLQG 100 (193)
T ss_pred ceEEEEeccccCCCCCCCcc-----------hHHHHHHhHHHHHHHhcCCccCchhHhcccCCCCchHHHHHHHHHHHhC
Confidence 47899988777643321111 12334456666666 88999887642 357999999999999888
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCe
Q 030793 75 LDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGK 150 (171)
Q Consensus 75 ~~~~~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~ 150 (171)
+++...++++||+++|.+++++++.++|.+++.++|+|.+ .+.++++ ...+.++++.+. .++||+|||||+|++.
T Consensus 101 ~~~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~~~~~~s~-~~~~~l~~~~~~a~~~gv~g~Ptfvv~~~ 178 (193)
T cd03025 101 PERLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEFLEDFQSD-EAKQAIQEDQKLARELGINGFPTLVLEDD 178 (193)
T ss_pred cchHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHcCh-HHHHHHHHHHHHHHHcCCCccCEEEEEeC
Confidence 8789999999999999999999999999999999999986 4667773 566777777664 7899999999999753
No 8
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=99.70 E-value=3.6e-16 Score=113.43 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=103.0
Q ss_pred CCHHHHHHHhhCChHHHHHHHHHHHHHhcC--CccccCCCC---CCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcC
Q 030793 19 VNKKDFYENKFGSQNQGIIARMTEVFRGLG--LEYNMSGLT---GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQG 93 (171)
Q Consensus 19 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~g--~~~~~~~~~---~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g 93 (171)
.....|+...|+ .|..+.+.+.++.++++ +.+.+.++. ..+..+.+++.++...+ ..++++..+|+++|.++
T Consensus 17 ~~i~~f~D~~Cp-~C~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~aa~a~~aa~~~~--~~~~~~~~lf~~~~~~~ 93 (178)
T cd03019 17 PEVIEFFSYGCP-HCYNFEPILEAWVKKLPKDVKFEKVPVVFGGGEGEPLARAFYAAEALG--LEDKLHAALFEAIHEKR 93 (178)
T ss_pred cEEEEEECCCCc-chhhhhHHHHHHHHhCCCCceEEEcCCccccccchHHHHHHHHHHHcC--cHhhhhHHHHHHHHHhC
Confidence 345566666775 89999999988888764 444444432 22478888888887777 78899999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeecc
Q 030793 94 KYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSG 155 (171)
Q Consensus 94 ~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G 155 (171)
.++++.+.|.+++.++|+|.+ .+++++ ......++++... .+.||+|||||+|||++.+.+
T Consensus 94 ~~~~~~~~l~~~a~~~Gl~~~~~~~~~~s-~~~~~~i~~~~~~~~~~gi~gTPt~iInG~~~~~~ 157 (178)
T cd03019 94 KRLLDPDDIRKIFLSQGVDKKKFDAAYNS-FSVKALVAKAEKLAKKYKITGVPAFVVNGKYVVNP 157 (178)
T ss_pred CCCCCHHHHHHHHHHhCCCHHHHHHHHhC-HHHHHHHHHHHHHHHHcCCCCCCeEEECCEEEECh
Confidence 999999999999999999987 466766 3455666666554 689999999999999976654
No 9
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.2e-15 Score=106.99 Aligned_cols=138 Identities=15% Similarity=0.226 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHHhcCCcccc---C------CCCCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCCCHHHH
Q 030793 32 QNQGIIARMTEVFRGLGLEYNM---S------GLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFL 102 (171)
Q Consensus 32 ~~~~~~~~~~~~a~~~g~~~~~---~------~~~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~~~~~L 102 (171)
...|.+++.+++++..|.||.- . .+..+|.++++++.+|+..+++....++.+|+++++++|+||.+.++|
T Consensus 52 ~r~~i~~hd~rIa~lTGqpFg~~y~~~lL~~~~~v~DSepa~~ai~aA~~l~~r~~l~ml~aIQrA~YvEGrdi~~t~vl 131 (212)
T COG3531 52 FRAYILPHDQRIAQLTGQPFGQAYFDGLLRDTGFVYDSEPACRAILAARLLDGRGRLTMLHAIQRAHYVEGRDITQTEVL 131 (212)
T ss_pred HHHHhhhhHHHHHHHhCCccchhHHhhhhcccCccccccHHHHHHHHHHHhCcccchHHHHHHHHHHHhccccchhhHHH
Confidence 5678999999999999999951 1 246899999999999998876555899999999999999999999999
Q ss_pred HHHHHHcCCchh--Hhhhc-CCCCChHHHHHH-HHH-hhCCCCcccEEEEC--Cee-ee-cc--CCCHHHHHHHHHHHh
Q 030793 103 VECARKVGVEGA--AEFLD-DPNSGLNEVHEE-LKK-YSANISGVPHFVLN--GKH-EL-SG--GQPPEVYLRAFQVAA 170 (171)
Q Consensus 103 ~~ia~~~Gld~~--~~~~~-~~~~~~~~v~~~-~~~-~~~gv~gvPtfvv~--~~~-~i-~G--~~~~~~~~~~l~~~~ 170 (171)
++++++.||+.+ ...++ + .+......++ ... ++.|+.|+|||.++ |+. .+ .| ..+++.+...+.+..
T Consensus 132 ~~laa~~GL~~~~f~~~f~~s-~~~~~~~~a~~r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 132 AELAAAIGLAAEEFDNAFDQS-GAARQAHIADSRRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHcCCCHHHHHHhcchh-HHHHHHHHHHHHHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 999999999976 33443 3 1222222222 222 68999999999985 553 33 35 336677777766543
No 10
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=99.64 E-value=4.9e-15 Score=104.65 Aligned_cols=136 Identities=15% Similarity=0.278 Sum_probs=102.2
Q ss_pred HHHHhhCChHHHHHHHHHHHHHhcC-CccccCCC---CCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCCCH
Q 030793 24 FYENKFGSQNQGIIARMTEVFRGLG-LEYNMSGL---TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDK 99 (171)
Q Consensus 24 ~~~~~~g~~~~~~~~~~~~~a~~~g-~~~~~~~~---~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~~~ 99 (171)
+....|+ .|..+.+.+.++.+..| +.+.+..+ ..++..+++++.++...+++.++++++++|.. .+..+.
T Consensus 12 f~D~~Cp-~C~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~-----~~~~~~ 85 (154)
T cd03023 12 FFDYNCG-YCKKLAPELEKLLKEDPDVRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNALMAT-----RGRLNE 85 (154)
T ss_pred EECCCCh-hHHHhhHHHHHHHHHCCCceEEEEeCCccCcchHHHHHHHHHHHHhChhHHHHHHHHHHhc-----CCCCCH
Confidence 3444554 78888899998877766 34444333 34567778877777655555888999988873 235678
Q ss_pred HHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHHHHHHH
Q 030793 100 EFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 167 (171)
Q Consensus 100 ~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~ 167 (171)
+.|.+++++.|+|.+ .+++++ +...+.++++... .++||+|||||+|||+ .+.|..+++.|.++|+
T Consensus 86 ~~l~~~a~~~gl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~-~~~G~~~~~~l~~~i~ 154 (154)
T cd03023 86 ESLLRIAKKAGLDEAKLKKDMDD-PEIEATIDKNRQLARALGITGTPAFIIGDT-VIPGAVPADTLKEAID 154 (154)
T ss_pred HHHHHHHHHcCCCHHHHHHHhhC-hHHHHHHHHHHHHHHHcCCCcCCeEEECCE-EecCCCCHHHHHHHhC
Confidence 889999999999987 567776 3566677776665 6899999999999997 6899999999998873
No 11
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=99.60 E-value=4.6e-15 Score=107.97 Aligned_cols=105 Identities=24% Similarity=0.308 Sum_probs=69.6
Q ss_pred CCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-
Q 030793 58 GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK- 134 (171)
Q Consensus 58 ~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~- 134 (171)
.+|.+|++++.||+.+|+++..+|..+|+++++.+++++++.++|.++|+++|||.+ .+.+.| +.....+.++++.
T Consensus 62 ~~~y~a~la~kAA~~qg~k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD~~~F~~d~~S-~~~~~~~~~D~~la 140 (176)
T PF13743_consen 62 SSSYPACLAYKAAQLQGKKKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLDVEMFKEDLHS-DEAKQAFQEDQQLA 140 (176)
T ss_dssp S--HHHHHHHHHHHTTT-H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--HHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCHHHHHHHHhC-hHHHHHHHHHHHHH
Confidence 567899999999999998889999999999999999999999999999999999998 566777 3566677777765
Q ss_pred hhCCCCcccEEEECC------eeeeccCCCHHHHH
Q 030793 135 YSANISGVPHFVLNG------KHELSGGQPPEVYL 163 (171)
Q Consensus 135 ~~~gv~gvPtfvv~~------~~~i~G~~~~~~~~ 163 (171)
+++||.|+||+||.+ ..++.|..+++.++
T Consensus 141 ~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~~~ 175 (176)
T PF13743_consen 141 REMGITGFPTLVIFNENNEEYGILIEGYYSYEVYE 175 (176)
T ss_dssp HHTT-SSSSEEEEE---------------------
T ss_pred HHcCCCCCCEEEEEecccccccccccccccccccC
Confidence 799999999999854 35678988887765
No 12
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=99.60 E-value=1.6e-14 Score=107.74 Aligned_cols=145 Identities=16% Similarity=0.143 Sum_probs=101.5
Q ss_pred CHHHHHHHhhCChHHHHHHHH---HHHHHhcC--CccccCC--CCCC-cHHHHHHHHHHHhcCcchHHHHHHHHHHHHhh
Q 030793 20 NKKDFYENKFGSQNQGIIARM---TEVFRGLG--LEYNMSG--LTGN-TLDSHRLLYLAGQQGLDKQHNLAEELFLGYFT 91 (171)
Q Consensus 20 ~~~~~~~~~~g~~~~~~~~~~---~~~a~~~g--~~~~~~~--~~~~-s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~ 91 (171)
...+|+.+.|+ +|..+.+.+ ..|.+.++ +.+.... +..+ +..+.+++.+|...+ ...++++++|++++.
T Consensus 40 ~VvEffdy~Cp-hC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~f~~~~~~~~~~a~~~a~~~~--~~~k~~~~lf~~i~~ 116 (207)
T PRK10954 40 QVLEFFSFYCP-HCYQFEEVYHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQAWAVAMALG--VEDKVTPPLFEGVQK 116 (207)
T ss_pred eEEEEeCCCCc-cHHHhcccccchHHHHHhCCCCCeEEEecccccchhhHHHHHHHHHHHHhC--cHHHHHHHHHHHHHc
Confidence 35577777775 888887654 66777654 3333322 2222 244455555666666 567788899999865
Q ss_pred cCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCC--------CHH
Q 030793 92 QGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQ--------PPE 160 (171)
Q Consensus 92 ~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~--------~~~ 160 (171)
++++.+.+.|.+++.+.|+|.+ .+++++. ...+.++++.+. .+.||+|||||+|||+|.+.... +.+
T Consensus 117 -~~~~~~~~~L~~~a~~~Gld~~~f~~~l~s~-~~~~~v~~~~~~a~~~gI~gtPtfiInGky~v~~~~~~~~~~~~~~~ 194 (207)
T PRK10954 117 -TQTIQSAADIRDVFIKAGVKGEDYDAAWNSF-VVKSLVAQQEKAAADLQLRGVPAMFVNGKYMVNNQGMDTSSMDVYVQ 194 (207)
T ss_pred -cCCCCCHHHHHHHHHHcCCCHHHHHHHHhCh-HHHHHHHHHHHHHHHcCCCCCCEEEECCEEEEccccccccchhhhHH
Confidence 5688999999999999999987 6788873 566677776654 68999999999999998775222 456
Q ss_pred HHHHHHHHH
Q 030793 161 VYLRAFQVA 169 (171)
Q Consensus 161 ~~~~~l~~~ 169 (171)
.+.+.++-+
T Consensus 195 ~~~~~i~~L 203 (207)
T PRK10954 195 QYADVVKFL 203 (207)
T ss_pred HHHHHHHHH
Confidence 666666543
No 13
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=99.09 E-value=6.7e-10 Score=79.14 Aligned_cols=135 Identities=15% Similarity=0.225 Sum_probs=83.8
Q ss_pred HHHHHhhCChHHHHHHHHHHHHHhc----CCccccCCCCCC---cHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCC
Q 030793 23 DFYENKFGSQNQGIIARMTEVFRGL----GLEYNMSGLTGN---TLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKY 95 (171)
Q Consensus 23 ~~~~~~~g~~~~~~~~~~~~~a~~~----g~~~~~~~~~~~---s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~ 95 (171)
.|....|+ .|..+...+..+.+.+ .+.+.+..++.+ +..+..++.++...+ +..+.+.+.+|+. ..+
T Consensus 18 ~f~d~~Cp-~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~----~~~ 91 (162)
T PF13462_consen 18 EFFDFQCP-HCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQG-KYFWFFHELLFSQ----QEN 91 (162)
T ss_dssp EEE-TTSH-HHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHH----CHS
T ss_pred EEECCCCH-hHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHh-HHHHHHHHHHHHh----hhc
Confidence 34444454 7888888887776665 244445444322 355666666666666 4555555555554 222
Q ss_pred CCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHH
Q 030793 96 IGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV 168 (171)
Q Consensus 96 i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~ 168 (171)
.... ..+++..|.+.. ..++++ ......+....+. .+.||.|||||+|||++ +.|..+++.|.++|++
T Consensus 92 ~~~~---~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~tPt~~inG~~-~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 92 FENK---KDIAANAGGSNEQFNKCLNS-DEIKAQLEADSQLARQLGITGTPTFFINGKY-VVGPYTIEELKELIDK 162 (162)
T ss_dssp TSSH---HHHHHHTTSHHHHHHHHHTS-HHHHHHHHHHHHHHHHHT-SSSSEEEETTCE-EETTTSHHHHHHHHHH
T ss_pred cchh---HHHHHHcCCCHHHHHHHhhc-hHHHHHHHHHHHHHHHcCCccccEEEECCEE-eCCCCCHHHHHHHHcC
Confidence 3333 334455555543 456666 3455556655544 68999999999999996 7888999999999875
No 14
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.6e-08 Score=77.03 Aligned_cols=146 Identities=13% Similarity=0.112 Sum_probs=85.8
Q ss_pred HHHHHhhCChHHHHHHHHHHHHHhcC-CccccCC--C-CCCcHHHHHHHHHHHh---cCcchHHHHHHHHHHHHhhcCCC
Q 030793 23 DFYENKFGSQNQGIIARMTEVFRGLG-LEYNMSG--L-TGNTLDSHRLLYLAGQ---QGLDKQHNLAEELFLGYFTQGKY 95 (171)
Q Consensus 23 ~~~~~~~g~~~~~~~~~~~~~a~~~g-~~~~~~~--~-~~~s~~a~r~~~~a~~---~g~~~~~~~~~~l~~a~~~~g~~ 95 (171)
.|....|+ .|+...+.+.+.....| +.+.+.. + ...+..++++..+++. ++..+++.|++.||+..-.....
T Consensus 90 ~f~d~~Cp-~C~~~~~~l~~~~i~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~~~ 168 (244)
T COG1651 90 EFFDYTCP-YCKEAFPELKKKYIDDGKVRLVLREFPFLDPACPYCRRAAQAARCAADQGIVRYWAFHDALFGSQAEAWAA 168 (244)
T ss_pred EEecCcCc-cHHHHHHHHHHHhhhcCCCceEEEEeecCCCCcHHHHHHHHHHHHhccccchhHHHHHHHHhhccccchhh
Confidence 34445554 78888888888665555 3355443 3 2344435555555544 33235999999999965333222
Q ss_pred CCCHHHHHHHHHHcCCchh-HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHHhC
Q 030793 96 IGDKEFLVECARKVGVEGA-AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN 171 (171)
Q Consensus 96 i~~~~~L~~ia~~~Gld~~-~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~~~ 171 (171)
..........+...+.+.. ..++.. ....+.+.++.+. .++||.|||||+++|+ .+.|..+.+++.++|+.+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~a~~~gv~gTPt~~v~~~-~~~g~~~~~~l~~~i~~~~~ 244 (244)
T COG1651 169 SILCAKDLAKADLAALDEGKKAKLNQ-KACDALIAKNYKLAQQLGVNGTPTFIVNGK-LVPGLPDLDELKAIIDEALK 244 (244)
T ss_pred hhhhhhhhhhhhHHHHHhhhhhccCh-HHHHHHHHHHHHHHHhcCCCcCCeEEECCe-eecCCCCHHHHHHHHHHhhC
Confidence 2111111112222222111 122221 1233455565554 7899999999999998 78999999999999988753
No 15
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.14 E-value=5.5e-06 Score=63.60 Aligned_cols=119 Identities=9% Similarity=0.012 Sum_probs=70.9
Q ss_pred HHHHhhCChHHHHHHHHHHHHHhcCCccccCC---CCCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCCCHH
Q 030793 24 FYENKFGSQNQGIIARMTEVFRGLGLEYNMSG---LTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKE 100 (171)
Q Consensus 24 ~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~---~~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~~~~ 100 (171)
|.+..|+ .|+.+...+..+.+...+.+.+-+ +.++|....+.+.++.... +.+..++..+..
T Consensus 124 FtDp~Cp-yC~kl~~~l~~~~~~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~--~a~~~~~~~~~~------------ 188 (251)
T PRK11657 124 FADPNCP-YCKQFWQQARPWVDSGKVQLRHILVGIIKPDSPGKAAAILAAKDPA--KALQEYEASGGK------------ 188 (251)
T ss_pred EECCCCh-hHHHHHHHHHHHhhcCceEEEEEeccccCcchHHHHHHHHhccCHH--HHHHHHHHhhhc------------
Confidence 4455665 688888888887766446665433 2356655555555554333 444444433321
Q ss_pred HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEEC---Cee-eeccCCCHHHHHHHHHH
Q 030793 101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLN---GKH-ELSGGQPPEVYLRAFQV 168 (171)
Q Consensus 101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~---~~~-~i~G~~~~~~~~~~l~~ 168 (171)
.|+.... ..+ .+..+.++++.+. .++||+|||+||+. |+. .+.|+.+.+.|.+.|..
T Consensus 189 --------~~~~~~~--~~~-~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 189 --------LGLKPPA--SIP-AAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred --------cCCCccc--cCC-HHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhCC
Confidence 2332211 011 1233456666665 78999999999994 432 47899999999988753
No 16
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.86 E-value=0.00013 Score=46.59 Aligned_cols=73 Identities=25% Similarity=0.343 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHH--HhcCCccccCCC--CC----CcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCCCHHHHH
Q 030793 32 QNQGIIARMTEVF--RGLGLEYNMSGL--TG----NTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLV 103 (171)
Q Consensus 32 ~~~~~~~~~~~~a--~~~g~~~~~~~~--~~----~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~~~~~L~ 103 (171)
.|..+.+.+.++. ...++.+.+.++ .. .+..+++++.++...+ ..+++.+++
T Consensus 11 ~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l------------------ 70 (98)
T cd02972 11 YCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQG--KFEALHEAL------------------ 70 (98)
T ss_pred hHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcC--cHHHHHHHH------------------
Confidence 6677777777774 344566666543 22 4788888888887665 778888888
Q ss_pred HHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECC
Q 030793 104 ECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNG 149 (171)
Q Consensus 104 ~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~ 149 (171)
+......+.|++||||++++|
T Consensus 71 -------------------------~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 71 -------------------------ADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred -------------------------HHHHHHHHcCCCCCCEEEECC
Confidence 112223579999999999999
No 17
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.55 E-value=0.00016 Score=54.92 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=35.0
Q ss_pred HHHHHHHH-hhCCCCcccEEEE-CCeeeeccCCCHHHHHHHHHHHh
Q 030793 127 EVHEELKK-YSANISGVPHFVL-NGKHELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 127 ~v~~~~~~-~~~gv~gvPtfvv-~~~~~i~G~~~~~~~~~~l~~~~ 170 (171)
.+++..+. .++||+|||||++ ||+ .+.|+.+.+.|.+.|++..
T Consensus 187 ~v~~~~~la~~lgi~gTPtiv~~~G~-~~~G~~~~~~L~~~l~~~~ 231 (232)
T PRK10877 187 DIADHYALGVQFGVQGTPAIVLSNGT-LVPGYQGPKEMKAFLDEHQ 231 (232)
T ss_pred hHHHhHHHHHHcCCccccEEEEcCCe-EeeCCCCHHHHHHHHHHcc
Confidence 35555553 6899999999999 666 6899999999999998764
No 18
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.43 E-value=0.00026 Score=44.26 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=31.1
Q ss_pred hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793 135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~ 169 (171)
.++|+.|+||++++|+..+.|..+.+.+.+.|+++
T Consensus 47 ~~~~v~~vPt~~~~g~~~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 47 MEYGIMAVPAIVINGDVEFIGAPTKEELVEAIKKR 81 (82)
T ss_pred HHcCCccCCEEEECCEEEEecCCCHHHHHHHHHhh
Confidence 46999999999999987788999999999998875
No 19
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.32 E-value=0.0014 Score=48.29 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=29.7
Q ss_pred HHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHHHHHH
Q 030793 127 EVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAF 166 (171)
Q Consensus 127 ~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l 166 (171)
.+.+.... .++||.|||||++++...+.|+.+.+.|.+.|
T Consensus 157 ~i~~~~~l~~~~gi~gtPtii~~~G~~~~G~~~~~~l~~~L 197 (197)
T cd03020 157 PVAANLALGRQLGVNGTPTIVLADGRVVPGAPPAAQLEALL 197 (197)
T ss_pred hHHHHHHHHHHcCCCcccEEEECCCeEecCCCCHHHHHhhC
Confidence 34444443 68999999999996444689999988887653
No 20
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.06 E-value=0.00076 Score=42.04 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=25.0
Q ss_pred hhCCCCcccEEEECCeeeecc-CCCHHHHHHHHH
Q 030793 135 YSANISGVPHFVLNGKHELSG-GQPPEVYLRAFQ 167 (171)
Q Consensus 135 ~~~gv~gvPtfvv~~~~~i~G-~~~~~~~~~~l~ 167 (171)
.++||.++|++++||+....| ..+.+++.+.|+
T Consensus 43 ~~ygv~~vPalvIng~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 43 EKYGVMSVPALVINGKVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp HHTT-SSSSEEEETTEEEEESS--HHHHHHHHHH
T ss_pred HHcCCCCCCEEEECCEEEEEecCCCHHHHHHHhC
Confidence 479999999999999987889 555677777764
No 21
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.35 E-value=0.0039 Score=38.81 Aligned_cols=57 Identities=14% Similarity=0.297 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCC-CHHHHHHHH
Q 030793 100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ-PPEVYLRAF 166 (171)
Q Consensus 100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~-~~~~~~~~l 166 (171)
+.+.+++++.|.+...-.+++ .. .+.++|+.|+||+++||+..+.|.. +.+++.+.+
T Consensus 18 ~~~~~~~~e~~~~~~~~~v~~-------~~---~a~~~~v~~vPti~i~G~~~~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 18 KNVKKAVEELGIDAEFEKVTD-------MN---EILEAGVTATPGVAVDGELVIMGKIPSKEEIKEIL 75 (76)
T ss_pred HHHHHHHHHcCCCeEEEEeCC-------HH---HHHHcCCCcCCEEEECCEEEEEeccCCHHHHHHHh
Confidence 456778888776533111111 11 1346899999999999987777864 446666654
No 22
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.20 E-value=0.0067 Score=39.03 Aligned_cols=29 Identities=31% Similarity=0.250 Sum_probs=23.7
Q ss_pred hhCCCCcccEEEECCeeeeccCCCHHHHH
Q 030793 135 YSANISGVPHFVLNGKHELSGGQPPEVYL 163 (171)
Q Consensus 135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~ 163 (171)
.++||.++|||++||+...+|..+.+++.
T Consensus 59 ~~~~V~~vPt~vidG~~~~~G~~~~~e~~ 87 (89)
T cd03026 59 EERGIMSVPAIFLNGELFGFGRMTLEEIL 87 (89)
T ss_pred HHcCCccCCEEEECCEEEEeCCCCHHHHh
Confidence 47999999999999987678877766554
No 23
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.09 E-value=0.014 Score=40.45 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=30.2
Q ss_pred hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793 135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~ 170 (171)
.++||.|+|||++ ||++ .+.|.++.+.+.+.|+++.
T Consensus 85 ~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 85 DRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred HHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHh
Confidence 4799999999987 6775 3679999999999998764
No 24
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=95.91 E-value=0.0091 Score=39.52 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=22.1
Q ss_pred hhCCCCcccEEEEC---Ce--eeeccCCCHHHHHHHH
Q 030793 135 YSANISGVPHFVLN---GK--HELSGGQPPEVYLRAF 166 (171)
Q Consensus 135 ~~~gv~gvPtfvv~---~~--~~i~G~~~~~~~~~~l 166 (171)
..+||.|+||+++- |+ +.+.|+.+.++|.+.|
T Consensus 76 ~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 76 QRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 57999999999984 44 2468999999998765
No 25
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=95.14 E-value=0.045 Score=37.27 Aligned_cols=36 Identities=6% Similarity=0.057 Sum_probs=29.1
Q ss_pred hhCCCCcccEEEE--CCe-eeeccCCCHHHHHHHHHHHh
Q 030793 135 YSANISGVPHFVL--NGK-HELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~-~~i~G~~~~~~~~~~l~~~~ 170 (171)
.++||.|+||+++ ||+ ..+.|+++.+.+.+.|+++.
T Consensus 81 ~~~~I~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 81 KKLGLDEEDSIYVFKDDEVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HHcCCccccEEEEEECCEEEEeeCCCCHHHHHHHHHHHh
Confidence 4799999999976 565 23579999999999988763
No 26
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=94.45 E-value=0.11 Score=35.06 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=29.8
Q ss_pred hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793 135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~ 169 (171)
..+||.-+|.+|||++|.+.|..+...-...+.+.
T Consensus 77 w~lgi~k~PAVVfD~~~VVYG~tDV~~A~~~~~~~ 111 (114)
T PF07511_consen 77 WSLGITKYPAVVFDDRYVVYGETDVARALARIEQW 111 (114)
T ss_pred HHhCccccCEEEEcCCeEEecccHHHHHHHHHHHH
Confidence 68999999999999999999998887666666543
No 27
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.063 Score=38.13 Aligned_cols=36 Identities=33% Similarity=0.567 Sum_probs=28.7
Q ss_pred HhhCCCCcccEEEEC---Ce--eeeccCCCHHHHHHHHHHH
Q 030793 134 KYSANISGVPHFVLN---GK--HELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 134 ~~~~gv~gvPtfvv~---~~--~~i~G~~~~~~~~~~l~~~ 169 (171)
++.++|.|+||||+- |+ +.+.|+.|++.|...++-+
T Consensus 108 a~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYV 148 (182)
T COG2143 108 AQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYV 148 (182)
T ss_pred HHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHH
Confidence 367999999999984 33 3468999999999888643
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=94.32 E-value=0.055 Score=32.39 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=22.6
Q ss_pred hCCCCcccEEEECCeeeeccCCCHHHHHHHH
Q 030793 136 SANISGVPHFVLNGKHELSGGQPPEVYLRAF 166 (171)
Q Consensus 136 ~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l 166 (171)
..|+.++|+++++|+ .+.|. +.+.+.+.|
T Consensus 45 ~~~~~~vP~~~~~~~-~~~g~-~~~~i~~~i 73 (74)
T TIGR02196 45 VLGQRGVPVIVIGHK-IIVGF-DPEKLDQLL 73 (74)
T ss_pred HhCCCcccEEEECCE-EEeeC-CHHHHHHHh
Confidence 579999999999987 57785 566666654
No 29
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=94.14 E-value=0.14 Score=34.42 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=28.7
Q ss_pred hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHH
Q 030793 135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV 168 (171)
Q Consensus 135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~ 168 (171)
..+||..+|.+|||++|.+.|..+...-...+++
T Consensus 78 w~lGi~k~PAVV~D~~~VVYG~~DV~~A~~~~~~ 111 (113)
T TIGR03757 78 WQLGVTKIPAVVVDRRYVVYGETDVARALALIQQ 111 (113)
T ss_pred HHcCCccCCEEEEcCCeEEecCccHHHHHHHHHh
Confidence 6899999999999999999998887766555543
No 30
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=93.90 E-value=0.12 Score=34.64 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=28.5
Q ss_pred hhCCCCcccEEEEC------CeeeeccCCCHHHHHHHHHHHh
Q 030793 135 YSANISGVPHFVLN------GKHELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 135 ~~~gv~gvPtfvv~------~~~~i~G~~~~~~~~~~l~~~~ 170 (171)
.++||.++||+++- ++..+.|..+-.+|.+.|..+.
T Consensus 69 ~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 69 EKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDIV 110 (113)
T ss_pred HHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHHHH
Confidence 46999999999983 3335679888889999888765
No 31
>PRK10996 thioredoxin 2; Provisional
Probab=93.60 E-value=0.15 Score=35.38 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=28.4
Q ss_pred hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~ 169 (171)
.++||.|+||+++ +|+. .+.|..+.+.|.+.|+++
T Consensus 100 ~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 100 ARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred HhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 3689999999987 4653 357999999999998875
No 32
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=93.57 E-value=0.067 Score=31.90 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=16.8
Q ss_pred hhCCCCcccEEEECCeeeecc
Q 030793 135 YSANISGVPHFVLNGKHELSG 155 (171)
Q Consensus 135 ~~~gv~gvPtfvv~~~~~i~G 155 (171)
.++|+.++||++++|+....|
T Consensus 46 ~~~~i~~vPti~i~~~~~~~g 66 (67)
T cd02973 46 DEYGVMSVPAIVINGKVEFVG 66 (67)
T ss_pred HHcCCcccCEEEECCEEEEec
Confidence 468999999999999854444
No 33
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=0.18 Score=35.57 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=30.5
Q ss_pred hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHhC
Q 030793 135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAAN 171 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~~ 171 (171)
.+++|..+||+++ ||+- .+.|+.+.+.+.+.|++..+
T Consensus 109 ~~Y~I~avPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 109 EDYEISAVPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred hhcceeeeeEEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 4799999999987 5642 46899999999999998753
No 34
>PRK09381 trxA thioredoxin; Provisional
Probab=92.65 E-value=0.3 Score=31.98 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=29.0
Q ss_pred hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHhC
Q 030793 135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAAN 171 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~~ 171 (171)
.+++|.++||+++ +|+. ...|..+.+.+.+.|+...+
T Consensus 69 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 69 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred HhCCCCcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence 3689999999987 5653 35688889999999887654
No 35
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=92.25 E-value=0.17 Score=37.86 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=28.1
Q ss_pred hhCCCCcccEEEECCeee-eccCCCHHHHHHHHHH
Q 030793 135 YSANISGVPHFVLNGKHE-LSGGQPPEVYLRAFQV 168 (171)
Q Consensus 135 ~~~gv~gvPtfvv~~~~~-i~G~~~~~~~~~~l~~ 168 (171)
.++||.++||++++++-. +.|..+.++|.+.|..
T Consensus 180 ~~~~V~~vPtl~i~~~~~~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 180 EKYGVMSVPKIVINKGVEEFVGAYPEEQFLEYILS 214 (215)
T ss_pred HHhCCccCCEEEEecCCEEEECCCCHHHHHHHHHh
Confidence 479999999999985433 7899999999888765
No 36
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=91.99 E-value=0.37 Score=33.65 Aligned_cols=36 Identities=28% Similarity=0.566 Sum_probs=28.0
Q ss_pred hhCCCCcccEEEE-C--Cee--eeccCCCHHHHHHHHHHHh
Q 030793 135 YSANISGVPHFVL-N--GKH--ELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 135 ~~~gv~gvPtfvv-~--~~~--~i~G~~~~~~~~~~l~~~~ 170 (171)
.++||.|+||+++ + |+. .+.|..+.++|.+.|+++.
T Consensus 70 ~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~ 110 (142)
T cd02950 70 DRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALV 110 (142)
T ss_pred HHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence 4689999999986 2 442 3579889999999988765
No 37
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=91.66 E-value=0.31 Score=31.74 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=24.6
Q ss_pred hhCCCCcccEEEE--CCe--eeeccCCCHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQV 168 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~--~~i~G~~~~~~~~~~l~~ 168 (171)
.+++|.++|||++ +|+ ..+.|. +.+.+.+.|++
T Consensus 65 ~~~~v~~~Pt~~~~~~g~~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 65 KRYRGKCEPTFLFYKNGELVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred HHcCCCcCcEEEEEECCEEEEEEecC-ChHHHHHHHhh
Confidence 5799999999987 454 235675 67888888765
No 38
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=91.61 E-value=0.29 Score=32.46 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=26.0
Q ss_pred hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQV 168 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~ 168 (171)
.++||.++||+++ +|+. .+.|..+.+.+.+.|++
T Consensus 73 ~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 73 RKLGAHSVPAIVGIINGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred HHcCCccCCEEEEEECCEEEEEecCCCCHHHHHHHHhc
Confidence 4689999999985 4553 24687888888888875
No 39
>PHA02278 thioredoxin-like protein
Probab=91.57 E-value=0.33 Score=32.03 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=23.5
Q ss_pred hhCCCCcccEEEE--CCee--eeccCCCHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRA 165 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~ 165 (171)
.+++|.|+|||++ +|+. .+.|..+.+.+.+.
T Consensus 66 ~~~~I~~iPT~i~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 66 KLFDIMSTPVLIGYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred HHCCCccccEEEEEECCEEEEEEeCCCCHHHHHhh
Confidence 4799999999987 5653 36788888777653
No 40
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=91.48 E-value=0.52 Score=30.07 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=27.1
Q ss_pred hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQV 168 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~ 168 (171)
.+++|.++||+++ +|+. .+.|..+.+.+.+.|++
T Consensus 65 ~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 65 KKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp HHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred hccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence 4699999999987 4543 45788899999998875
No 41
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=91.21 E-value=0.35 Score=32.58 Aligned_cols=36 Identities=22% Similarity=0.460 Sum_probs=27.8
Q ss_pred hhCCCCcccEEEE-C---Cee--eeccCCCHHHHHHHHHHHh
Q 030793 135 YSANISGVPHFVL-N---GKH--ELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 135 ~~~gv~gvPtfvv-~---~~~--~i~G~~~~~~~~~~l~~~~ 170 (171)
.+++|.|+||+++ + |+. .+.|+.+.+.|.+.|+.+.
T Consensus 78 ~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~ 119 (125)
T cd02951 78 RKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQ 119 (125)
T ss_pred HHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 4689999999876 3 242 3579889999999988764
No 42
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=90.98 E-value=0.93 Score=27.30 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHHHHH
Q 030793 101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 167 (171)
Q Consensus 101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~ 167 (171)
.+..+..+.|++-..-.++. . ....+.+.....|+.++|+++++|.-.+. ..+..++.+.|+
T Consensus 15 ~~~~~L~~~~~~~~~idi~~---~-~~~~~~~~~~~~~~~~vP~i~~~~g~~l~-~~~~~~~~~~l~ 76 (77)
T TIGR02200 15 QLMRTLDKLGAAYEWVDIEE---D-EGAADRVVSVNNGNMTVPTVKFADGSFLT-NPSAAQVKAKLQ 76 (77)
T ss_pred HHHHHHHHcCCceEEEeCcC---C-HhHHHHHHHHhCCCceeCEEEECCCeEec-CCCHHHHHHHhh
Confidence 34556666777543111111 1 22333333345689999999886543444 445556665553
No 43
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=90.93 E-value=0.5 Score=29.95 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=27.2
Q ss_pred hhCCCCcccEEEE--CCe--eeeccCCCHHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~--~~i~G~~~~~~~~~~l~~~ 169 (171)
.++||.++|++++ +|+ ..+.|..+.+.+...|++.
T Consensus 62 ~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 62 AKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred HHcCCCcCCEEEEEeCCcEeeeecCCCCHHHHHHHHHhh
Confidence 3689999999987 554 2356888888999888764
No 44
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=90.85 E-value=0.8 Score=28.12 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHH
Q 030793 100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYL 163 (171)
Q Consensus 100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~ 163 (171)
.....+.++.|++-....++.. ....+++.. ..|..++|+++++|+ .+.|..+...+.
T Consensus 13 ~~a~~~L~~~~i~~~~~di~~~----~~~~~~~~~-~~g~~~vP~i~i~g~-~igg~~~~~~~~ 70 (79)
T TIGR02181 13 TRAKALLSSKGVTFTEIRVDGD----PALRDEMMQ-RSGRRTVPQIFIGDV-HVGGCDDLYALD 70 (79)
T ss_pred HHHHHHHHHcCCCcEEEEecCC----HHHHHHHHH-HhCCCCcCEEEECCE-EEcChHHHHHHH
Confidence 3456677778887652122221 233333332 357899999999998 476765554443
No 45
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=90.72 E-value=1 Score=27.16 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCC-cccEEEECCeeeeccCCCHHHH
Q 030793 100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANIS-GVPHFVLNGKHELSGGQPPEVY 162 (171)
Q Consensus 100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~-gvPtfvv~~~~~i~G~~~~~~~ 162 (171)
...+.+..+.|++-..-.++. . ....+.+.. ..|.. ++|+++++|+ .+.|..+...+
T Consensus 14 ~~ak~~L~~~~i~~~~i~i~~---~-~~~~~~~~~-~~~~~~~vP~v~i~g~-~igg~~~~~~~ 71 (75)
T cd03418 14 VRAKALLDKKGVDYEEIDVDG---D-PALREEMIN-RSGGRRTVPQIFIGDV-HIGGCDDLYAL 71 (75)
T ss_pred HHHHHHHHHCCCcEEEEECCC---C-HHHHHHHHH-HhCCCCccCEEEECCE-EEeChHHHHHH
Confidence 345666777888765212222 1 233333322 24545 9999999998 47665554433
No 46
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=90.57 E-value=0.42 Score=32.09 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=22.3
Q ss_pred hhCCCCcccEEEE--CCee--eeccCCCHHHHH
Q 030793 135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYL 163 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~ 163 (171)
.++||.|+|||++ +|+. .+.|..+-+++.
T Consensus 77 ~~f~V~sIPTli~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 77 ARFGVLRTPALLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred HHcCCCcCCEEEEEECCEEEEEEeCccCHHHHh
Confidence 4699999999987 5663 357888877765
No 47
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=90.26 E-value=0.33 Score=41.56 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=27.8
Q ss_pred hhCCCCcccEEEECCeeeeccCCCHHHHHHHH
Q 030793 135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAF 166 (171)
Q Consensus 135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l 166 (171)
.++||.+||++++||+....|..+.+++.+.|
T Consensus 523 ~~~~v~~vP~~~i~~~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 523 DEYGIMSVPAIVVDDQQVYFGKKTIEEMLELI 554 (555)
T ss_pred HhCCceecCEEEECCEEEEeeCCCHHHHHHhh
Confidence 37999999999999987778988988888765
No 48
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=89.99 E-value=0.52 Score=29.98 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=24.0
Q ss_pred hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAF 166 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l 166 (171)
.++||.|+||+++ +|+. .+.|..+.+.+...|
T Consensus 60 ~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 60 QQFGVQALPTVYLFAAGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred HHcCCCCCCEEEEEeCCEEeeeecCCCCHHHHHHHh
Confidence 3689999999986 4543 356888888887765
No 49
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=89.60 E-value=0.51 Score=30.32 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=24.5
Q ss_pred hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAF 166 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l 166 (171)
.++||.|+||+++ +|+. .+.|..+.++|.+.|
T Consensus 61 ~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 61 EAAGIMGTPTVQFFKDKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred HHCCCeeccEEEEEECCeEEEEEeCCccHHHHHHhh
Confidence 3689999999987 4542 357888888887765
No 50
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=89.54 E-value=0.73 Score=29.94 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=26.5
Q ss_pred hhCCCCcccEEEE-CCe--eeeccCCCHHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL-NGK--HELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 135 ~~~gv~gvPtfvv-~~~--~~i~G~~~~~~~~~~l~~~ 169 (171)
.+++|.++||+++ +|. +...|..+.+.+.+.+++.
T Consensus 66 ~~~~I~~~Pt~~l~~~~~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 66 SEFGVRGYPTIKLLKGDLAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred hhcCCccccEEEEEcCCCceeecCCCCHHHHHHHHHhh
Confidence 3689999999976 432 3457888889888888764
No 51
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=89.31 E-value=1.6 Score=27.28 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=33.5
Q ss_pred HHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHH
Q 030793 103 VECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLR 164 (171)
Q Consensus 103 ~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~ 164 (171)
.++..+.|++-..-.+.. ... .+.+ +......|...||.++++|+ .+.|..+.+.+..
T Consensus 18 k~~L~~~g~~~~~i~~~~-~~~-~~~~-~~~~~~~g~~tvP~I~i~~~-~igg~~d~~~~~~ 75 (80)
T COG0695 18 KRLLDRKGVDYEEIDVDD-DEP-EEAR-EMVKRGKGQRTVPQIFIGGK-HVGGCDDLDALEA 75 (80)
T ss_pred HHHHHHcCCCcEEEEecC-CcH-HHHH-HHHHHhCCCCCcCEEEECCE-EEeCcccHHHHHh
Confidence 445567788765222322 111 1111 22222349999999999998 5777667766654
No 52
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=89.15 E-value=0.74 Score=33.48 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCccc-EEEEC--Ce--eeeccCCCHHHHHHHHHHHh
Q 030793 98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVP-HFVLN--GK--HELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvP-tfvv~--~~--~~i~G~~~~~~~~~~l~~~~ 170 (171)
+.+...++.++.|++-.. .+.++. ..+ ...+|+.|+| ||+++ |+ +...|..+.+.+.+.|+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~-~~~D~~---~~~-----~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 108 DRQKAISWLKELGNPYAL-SLFDGD---GML-----GLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CHHHHHHHHHHcCCCCce-EEEcCC---ccH-----HHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 345566777777765321 122211 111 1368999999 67786 43 34578888888888877654
No 53
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=89.04 E-value=1.6 Score=26.34 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHH
Q 030793 101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLR 164 (171)
Q Consensus 101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~ 164 (171)
....+.++.|++-....+... ....+.+. +.|..+||.++++|+..+.|. +++.+.+
T Consensus 14 ~ak~~L~~~~i~~~~~di~~~----~~~~~~~~--~~g~~~vP~v~~~g~~~~~G~-~~~~~~~ 70 (72)
T TIGR02194 14 MTKKALEEHGIAFEEINIDEQ----PEAIDYVK--AQGFRQVPVIVADGDLSWSGF-RPDKLKA 70 (72)
T ss_pred HHHHHHHHCCCceEEEECCCC----HHHHHHHH--HcCCcccCEEEECCCcEEecc-CHHHHHh
Confidence 345566677887652122221 22333332 468899999999886446664 5565554
No 54
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=88.93 E-value=0.55 Score=29.45 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=17.2
Q ss_pred hCCCCcccEEEECCeeeeccCCCH
Q 030793 136 SANISGVPHFVLNGKHELSGGQPP 159 (171)
Q Consensus 136 ~~gv~gvPtfvv~~~~~i~G~~~~ 159 (171)
..++.+||+++++|+ .+.|..+.
T Consensus 53 ~~~~~~vP~ifi~g~-~igg~~~~ 75 (85)
T PRK11200 53 GKPVETVPQIFVDQK-HIGGCTDF 75 (85)
T ss_pred CCCCCcCCEEEECCE-EEcCHHHH
Confidence 457789999999998 46665443
No 55
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=88.91 E-value=1.4 Score=27.02 Aligned_cols=54 Identities=26% Similarity=0.268 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCch--hHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCC
Q 030793 101 FLVECARKVGVEG--AAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ 157 (171)
Q Consensus 101 ~L~~ia~~~Gld~--~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~ 157 (171)
.+..+..+.|++. ..-.++. +.....+.+.+. ...|+.++|+++++|+ .+.|..
T Consensus 14 ~~~~~L~~~~i~~~~~~~~v~~-~~~~~~~~~~l~-~~~g~~~vP~v~i~g~-~igg~~ 69 (84)
T TIGR02180 14 KAKEILAKLNVKPAYEVVELDQ-LSNGSEIQDYLE-EITGQRTVPNIFINGK-FIGGCS 69 (84)
T ss_pred HHHHHHHHcCCCCCCEEEEeeC-CCChHHHHHHHH-HHhCCCCCCeEEECCE-EEcCHH
Confidence 4555666777662 2111222 111122333222 3468899999999998 476643
No 56
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=88.81 E-value=1 Score=26.06 Aligned_cols=46 Identities=26% Similarity=0.386 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCee
Q 030793 101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKH 151 (171)
Q Consensus 101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~ 151 (171)
...++..+.|++-+.-.+++. ...++.+... .|..++|+++++|++
T Consensus 14 ~~~~~L~~~~i~y~~~dv~~~----~~~~~~l~~~-~g~~~~P~v~i~g~~ 59 (60)
T PF00462_consen 14 KAKEFLDEKGIPYEEVDVDED----EEAREELKEL-SGVRTVPQVFIDGKF 59 (60)
T ss_dssp HHHHHHHHTTBEEEEEEGGGS----HHHHHHHHHH-HSSSSSSEEEETTEE
T ss_pred HHHHHHHHcCCeeeEcccccc----hhHHHHHHHH-cCCCccCEEEECCEE
Confidence 355667778887652223331 2333333332 299999999999984
No 57
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=88.60 E-value=0.62 Score=28.26 Aligned_cols=54 Identities=22% Similarity=0.151 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCH
Q 030793 100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPP 159 (171)
Q Consensus 100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~ 159 (171)
.....++.+.|++-..-.+... ....+++.. ..|-.++|.+++||+ .|.|..+.
T Consensus 15 ~ka~~~L~~~gi~~~~~di~~~----~~~~~el~~-~~g~~~vP~v~i~~~-~iGg~~~~ 68 (73)
T cd03027 15 TAVRLFLREKGLPYVEINIDIF----PERKAELEE-RTGSSVVPQIFFNEK-LVGGLTDL 68 (73)
T ss_pred HHHHHHHHHCCCceEEEECCCC----HHHHHHHHH-HhCCCCcCEEEECCE-EEeCHHHH
Confidence 4456677888887652122221 233333333 246688999999998 47665443
No 58
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=88.30 E-value=0.84 Score=34.05 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=26.3
Q ss_pred hhCCCCcccEEEE--CCee---eeccCCCHHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGKH---ELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~---~i~G~~~~~~~~~~l~~~ 169 (171)
.++||.++|||++ +|+. ...|..+.+.|.+.|+..
T Consensus 71 ~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 71 EKYGVERVPTTIILEEGKDGGIRYTGIPAGYEFAALIEDI 110 (215)
T ss_pred HHcCCCccCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHH
Confidence 4799999999988 3443 356888888887777654
No 59
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=88.10 E-value=0.96 Score=28.75 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=26.0
Q ss_pred hhCCCCcccEEEE-C-Ce--eeeccCCCHHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL-N-GK--HELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 135 ~~~gv~gvPtfvv-~-~~--~~i~G~~~~~~~~~~l~~~ 169 (171)
.++||.++|++++ . |+ +.+.|..+.+.|...|++.
T Consensus 63 ~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 63 SRFGVSGFPTIKFFPKGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred HhCCCCcCCEEEEecCCCcceeecCCCCHHHHHHHHHhc
Confidence 4689999999965 2 33 3467888888888877753
No 60
>PHA02125 thioredoxin-like protein
Probab=87.90 E-value=0.84 Score=27.93 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=20.7
Q ss_pred hhCCCCcccEEEECCe--eeeccCC-CHHHHHHHH
Q 030793 135 YSANISGVPHFVLNGK--HELSGGQ-PPEVYLRAF 166 (171)
Q Consensus 135 ~~~gv~gvPtfvv~~~--~~i~G~~-~~~~~~~~l 166 (171)
.+++|.++|||+ +|+ ..+.|.. +...+++.|
T Consensus 40 ~~~~v~~~PT~~-~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 40 AKHHIRSLPTLV-NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred HHcCCceeCeEE-CCEEEEEEeCCCCcHHHHHHHh
Confidence 468999999998 554 2466763 335565544
No 61
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=87.59 E-value=0.59 Score=30.32 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=24.5
Q ss_pred hhCCCCcccEEEE-C---Ce--eeeccCCCHHHHHHHHH
Q 030793 135 YSANISGVPHFVL-N---GK--HELSGGQPPEVYLRAFQ 167 (171)
Q Consensus 135 ~~~gv~gvPtfvv-~---~~--~~i~G~~~~~~~~~~l~ 167 (171)
.++||.|+||+++ + |+ ..+.|..+.+.|.+.|+
T Consensus 66 ~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 66 KRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred HHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 3689999999876 3 33 23579999998887763
No 62
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=86.95 E-value=1.1 Score=27.46 Aligned_cols=32 Identities=25% Similarity=0.515 Sum_probs=23.0
Q ss_pred hhCCCCcccEEEE--CCe--eeeccCCCHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGK--HELSGGQPPEVYLRAF 166 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~--~~i~G~~~~~~~~~~l 166 (171)
.++|+.++|++++ +|+ ..+.|..+.+.+...|
T Consensus 57 ~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 57 EEYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred HhcCcccccEEEEEECCEEEEEEecCCCHHHHHHHh
Confidence 3689999999987 454 2356777777777655
No 63
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=86.85 E-value=1.3 Score=31.72 Aligned_cols=63 Identities=22% Similarity=0.377 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCccc-EEEEC--Ce--eeeccCCCHHHHHHHHHHHh
Q 030793 99 KEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVP-HFVLN--GK--HELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 99 ~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvP-tfvv~--~~--~~i~G~~~~~~~~~~l~~~~ 170 (171)
.+...+++++.|++.. ..+.++. ..+ ...+|+.|+| +|+|+ |+ +...|..+.+++.+.|+++.
T Consensus 104 ~~~~~~~~~~~~~~f~-~v~~D~~---~~~-----~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 104 SQNALKFLKELGNPYQ-AILIDPN---GKL-----GLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred hHHHHHHHHHcCCCCc-eEEECCC---Cch-----HHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 3445567777777532 1122211 111 1358999999 67775 54 34568888999999888764
No 64
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=86.49 E-value=1.5 Score=29.09 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=28.3
Q ss_pred hhCCCCcccEEEEC----Ce--eeeccCCCHHHHHHHHHHHh
Q 030793 135 YSANISGVPHFVLN----GK--HELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 135 ~~~gv~gvPtfvv~----~~--~~i~G~~~~~~~~~~l~~~~ 170 (171)
..+++.|+|++++= |+ +.+.|..+.+.|...|+++.
T Consensus 70 ~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 70 QSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred HHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 35889999999762 33 24579999999999998864
No 65
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=86.44 E-value=2.9 Score=24.49 Aligned_cols=57 Identities=26% Similarity=0.254 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHH
Q 030793 101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLR 164 (171)
Q Consensus 101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~ 164 (171)
.+..+..+.|++-..-.++. .....+++.. -.++.++|+++++|+ .+.|.. .+.+.+
T Consensus 15 ~~~~~l~~~~i~~~~~~i~~----~~~~~~~~~~-~~~~~~vP~i~~~~~-~i~g~~-~~~l~~ 71 (73)
T cd02976 15 ATKRFLDERGIPFEEVDVDE----DPEALEELKK-LNGYRSVPVVVIGDE-HLSGFR-PDKLRA 71 (73)
T ss_pred HHHHHHHHCCCCeEEEeCCC----CHHHHHHHHH-HcCCcccCEEEECCE-EEecCC-HHHHHh
Confidence 45556666777654111211 1223333332 248899999999986 677754 445544
No 66
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=85.92 E-value=1 Score=38.26 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=29.3
Q ss_pred hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHH
Q 030793 135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV 168 (171)
Q Consensus 135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~ 168 (171)
.++++.+||++++||+....|..+.++|.+.+.+
T Consensus 163 ~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 163 EARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred HhcCCcccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 4799999999999998767899999888888764
No 67
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=85.85 E-value=1 Score=29.42 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=21.6
Q ss_pred hhCCCCcccEEEE--CCe---eeeccCCCHHHHHH
Q 030793 135 YSANISGVPHFVL--NGK---HELSGGQPPEVYLR 164 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~---~~i~G~~~~~~~~~ 164 (171)
.++||.++||+++ +|+ ....|..+.+.+.+
T Consensus 72 ~~~~v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~ 106 (108)
T cd02996 72 DRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAE 106 (108)
T ss_pred HhCCCCcCCEEEEEeCCcCcceecCCCCCHHHHHh
Confidence 4689999999986 454 23468777777665
No 68
>PHA03050 glutaredoxin; Provisional
Probab=85.69 E-value=2.2 Score=28.35 Aligned_cols=58 Identities=10% Similarity=0.077 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCch---hHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHH
Q 030793 101 FLVECARKVGVEG---AAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEV 161 (171)
Q Consensus 101 ~L~~ia~~~Gld~---~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~ 161 (171)
...++..+.|++. ..-.++.. ....++++.+.. ..|-..||+++|+|++ |.|..+...
T Consensus 28 ~ak~~L~~~~i~~~~~~~i~i~~~-~~~~~~~~~l~~-~tG~~tVP~IfI~g~~-iGG~ddl~~ 88 (108)
T PHA03050 28 NALDILNKFSFKRGAYEIVDIKEF-KPENELRDYFEQ-ITGGRTVPRIFFGKTS-IGGYSDLLE 88 (108)
T ss_pred HHHHHHHHcCCCcCCcEEEECCCC-CCCHHHHHHHHH-HcCCCCcCEEEECCEE-EeChHHHHH
Confidence 4566777778732 11111110 111344444443 3577899999999984 777655443
No 69
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=85.68 E-value=1.5 Score=28.51 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=21.6
Q ss_pred hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQ 167 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~ 167 (171)
.+++|.|+|||++ +|+. .+.|+. .+.+.+.+.
T Consensus 65 ~~~~V~~~Pt~~~~~~G~~v~~~~G~~-~~~l~~~~~ 100 (103)
T cd02985 65 RREKIIEVPHFLFYKDGEKIHEEEGIG-PDELIGDVL 100 (103)
T ss_pred HHcCCCcCCEEEEEeCCeEEEEEeCCC-HHHHHHHHH
Confidence 4689999999987 4652 356765 455555543
No 70
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=85.54 E-value=2.9 Score=27.22 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHH
Q 030793 101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEV 161 (171)
Q Consensus 101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~ 161 (171)
....+..+.|++-..-.++... ...+.++.+. ...|...+|.++|+|+ .|.|..+...
T Consensus 23 ~ak~~L~~~~i~~~~vdid~~~-~~~~~~~~l~-~~tg~~tvP~Vfi~g~-~iGG~ddl~~ 80 (99)
T TIGR02189 23 VVKRLLLTLGVNPAVHEIDKEP-AGKDIENALS-RLGCSPAVPAVFVGGK-LVGGLENVMA 80 (99)
T ss_pred HHHHHHHHcCCCCEEEEcCCCc-cHHHHHHHHH-HhcCCCCcCeEEECCE-EEcCHHHHHH
Confidence 3455667778875411122211 1122323332 2358899999999998 5777655433
No 71
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=85.41 E-value=1.1 Score=28.60 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=21.8
Q ss_pred hhCCCCcccEEEE--CCe--eeeccCCCHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGK--HELSGGQPPEVYLRA 165 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~--~~i~G~~~~~~~~~~ 165 (171)
.++||.++||+++ +|+ ..+.|..+.+.+.+.
T Consensus 69 ~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 69 EEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred HhCCCccccEEEEEeCCCeeEEeCCCCCHHHHHhh
Confidence 3689999999977 344 245687777776543
No 72
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=85.13 E-value=1.2 Score=37.79 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=29.6
Q ss_pred hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793 135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~ 169 (171)
.++++.+||++++||+....|..+.++|.+.+...
T Consensus 164 ~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 164 EALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEET 198 (515)
T ss_pred HhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhc
Confidence 47999999999999987678999999988777643
No 73
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=84.94 E-value=2.6 Score=26.80 Aligned_cols=55 Identities=25% Similarity=0.415 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCchh-HhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHH
Q 030793 100 EFLVECARKVGVEGA-AEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEV 161 (171)
Q Consensus 100 ~~L~~ia~~~Gld~~-~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~ 161 (171)
..+.++..+.|++-. .....+ .++++.+.. ..|...+|.++++|++ |.|..+...
T Consensus 27 ~~ak~~L~~~~i~y~~idv~~~-----~~~~~~l~~-~~g~~tvP~vfi~g~~-iGG~~~l~~ 82 (90)
T cd03028 27 RKVVQILNQLGVDFGTFDILED-----EEVRQGLKE-YSNWPTFPQLYVNGEL-VGGCDIVKE 82 (90)
T ss_pred HHHHHHHHHcCCCeEEEEcCCC-----HHHHHHHHH-HhCCCCCCEEEECCEE-EeCHHHHHH
Confidence 356677788888755 222221 334443333 3577889999999984 766544433
No 74
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=84.73 E-value=2.3 Score=23.66 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=25.2
Q ss_pred HHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH
Q 030793 102 LVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK 134 (171)
Q Consensus 102 L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~ 134 (171)
|.+||+.+|++.. ..++++.....++.++.+.+
T Consensus 2 i~dIA~~agvS~~TVSr~ln~~~~vs~~tr~rI~~ 36 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSRVLNGPPRVSEETRERILE 36 (46)
T ss_dssp HHHHHHHHTSSHHHHHHHHTTCSSSTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 7899999999987 56787755677777776543
No 75
>PRK10329 glutaredoxin-like protein; Provisional
Probab=84.59 E-value=6.4 Score=24.54 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHHHHH
Q 030793 101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 167 (171)
Q Consensus 101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~ 167 (171)
..+.+..+.|++-..-.++.. .+..+.+. ..|..++|++++++. .+.|. ..+.+.+++-
T Consensus 16 ~ak~~L~~~gI~~~~idi~~~----~~~~~~~~--~~g~~~vPvv~i~~~-~~~Gf-~~~~l~~~~~ 74 (81)
T PRK10329 16 ATKRAMESRGFDFEMINVDRV----PEAAETLR--AQGFRQLPVVIAGDL-SWSGF-RPDMINRLHP 74 (81)
T ss_pred HHHHHHHHCCCceEEEECCCC----HHHHHHHH--HcCCCCcCEEEECCE-EEecC-CHHHHHHHHH
Confidence 355666778887652122221 22333332 358899999999886 57775 5666666543
No 76
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=84.57 E-value=1.7 Score=27.84 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=24.6
Q ss_pred hhCCCCcccEEEE--CCee-eeccCCCHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGKH-ELSGGQPPEVYLRAFQ 167 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~-~i~G~~~~~~~~~~l~ 167 (171)
.+++|.++||+++ +|+. ...|..+.+.+.+.|+
T Consensus 65 ~~~~i~~~Pt~~~~~~g~~~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 65 GRFFVTALPTIYHAKDGVFRRYQGPRDKEDLISFIE 100 (101)
T ss_pred HHcCCcccCEEEEeCCCCEEEecCCCCHHHHHHHHh
Confidence 3689999999987 3542 3468888888877765
No 77
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=83.35 E-value=3.7 Score=26.56 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCchh-HhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHH
Q 030793 100 EFLVECARKVGVEGA-AEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVY 162 (171)
Q Consensus 100 ~~L~~ia~~~Gld~~-~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~ 162 (171)
....++..+.|++-. ....++ .++++.+.. ..|-..+|.++|+|+ .|.|..+...+
T Consensus 31 ~~ak~lL~~~~i~~~~~di~~~-----~~~~~~l~~-~tg~~tvP~vfi~g~-~iGG~ddl~~l 87 (97)
T TIGR00365 31 ARAVQILKACGVPFAYVNVLED-----PEIRQGIKE-YSNWPTIPQLYVKGE-FVGGCDIIMEM 87 (97)
T ss_pred HHHHHHHHHcCCCEEEEECCCC-----HHHHHHHHH-HhCCCCCCEEEECCE-EEeChHHHHHH
Confidence 356777788888765 222222 334444333 356789999999998 47676554443
No 78
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=82.84 E-value=2.3 Score=28.81 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=20.7
Q ss_pred hCCCCcccEEEE--CCee--eecc-CCCHHHHHHHH
Q 030793 136 SANISGVPHFVL--NGKH--ELSG-GQPPEVYLRAF 166 (171)
Q Consensus 136 ~~gv~gvPtfvv--~~~~--~i~G-~~~~~~~~~~l 166 (171)
..+|.|+|||++ +|+. .+.| ..+.++|...+
T Consensus 85 ~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 85 PTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred cccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence 468999999987 5653 2346 44577776654
No 79
>PRK10638 glutaredoxin 3; Provisional
Probab=82.10 E-value=4.3 Score=25.17 Aligned_cols=54 Identities=15% Similarity=0.141 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHH
Q 030793 101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPE 160 (171)
Q Consensus 101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~ 160 (171)
....+..+.|++-+..-++.. ....+++. ...|...+|+++++|+ .+.|..+..
T Consensus 17 ~a~~~L~~~gi~y~~~dv~~~----~~~~~~l~-~~~g~~~vP~i~~~g~-~igG~~~~~ 70 (83)
T PRK10638 17 RAKALLNSKGVSFQEIPIDGD----AAKREEMI-KRSGRTTVPQIFIDAQ-HIGGCDDLY 70 (83)
T ss_pred HHHHHHHHcCCCcEEEECCCC----HHHHHHHH-HHhCCCCcCEEEECCE-EEeCHHHHH
Confidence 455677778887652122221 22333333 2468889999999998 476654443
No 80
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=81.52 E-value=2.3 Score=27.52 Aligned_cols=32 Identities=13% Similarity=0.276 Sum_probs=22.0
Q ss_pred hhCCCCcccEEEE--CCe-------eeeccCCCHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGK-------HELSGGQPPEVYLRAF 166 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~-------~~i~G~~~~~~~~~~l 166 (171)
.++||.|+||+++ +|+ +...|..+.+.+.+-|
T Consensus 68 ~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 68 GKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred HHcCCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 3689999999987 232 2346777777776544
No 81
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=80.44 E-value=0.99 Score=27.22 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=16.4
Q ss_pred hCCCCcccEEEECCeeeeccCC
Q 030793 136 SANISGVPHFVLNGKHELSGGQ 157 (171)
Q Consensus 136 ~~gv~gvPtfvv~~~~~i~G~~ 157 (171)
..|...+|.++++|++ +.|..
T Consensus 45 ~~g~~~vP~ifi~g~~-igg~~ 65 (72)
T cd03029 45 VTGAMTVPQVFIDGEL-IGGSD 65 (72)
T ss_pred HhCCCCcCeEEECCEE-EeCHH
Confidence 3688999999999984 66643
No 82
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=80.43 E-value=4.5 Score=28.53 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHh---hCCCCcccEEEECCeeeeccCCCHHH
Q 030793 100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKY---SANISGVPHFVLNGKHELSGGQPPEV 161 (171)
Q Consensus 100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~---~~gv~gvPtfvv~~~~~i~G~~~~~~ 161 (171)
....++.++.|++-+...++.. .+..+++... ..+-..+|.++|+|+| |.|+.+...
T Consensus 20 ~~ak~iL~~~~V~~~e~DVs~~----~~~~~EL~~~~g~~~~~~tvPqVFI~G~~-IGG~del~~ 79 (147)
T cd03031 20 NNVRAILESFRVKFDERDVSMD----SGFREELRELLGAELKAVSLPRVFVDGRY-LGGAEEVLR 79 (147)
T ss_pred HHHHHHHHHCCCcEEEEECCCC----HHHHHHHHHHhCCCCCCCCCCEEEECCEE-EecHHHHHH
Confidence 4566777888887652223221 3344444431 1234789999999985 767654433
No 83
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=80.27 E-value=2.6 Score=36.41 Aligned_cols=37 Identities=14% Similarity=0.326 Sum_probs=29.3
Q ss_pred hhCCCCcccEEEE---CCee----eeccCCCHHHHHHHHHHHhC
Q 030793 135 YSANISGVPHFVL---NGKH----ELSGGQPPEVYLRAFQVAAN 171 (171)
Q Consensus 135 ~~~gv~gvPtfvv---~~~~----~i~G~~~~~~~~~~l~~~~~ 171 (171)
.++|+.|+||+++ +|+. .+.|..+.+.|.+.++++.+
T Consensus 528 ~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~~ 571 (571)
T PRK00293 528 KHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQP 571 (571)
T ss_pred HHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhcC
Confidence 4689999999987 3442 35688899999999998753
No 84
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=80.13 E-value=5.6 Score=24.20 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCC
Q 030793 100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQP 158 (171)
Q Consensus 100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~ 158 (171)
..+.++..+.|++-..-.++.. .....++..+. ...|..++|.++++|++ +.|...
T Consensus 14 ~~~~~~l~~~~~~~~~~~v~~~-~~~~~~~~~~~-~~~g~~~~P~v~~~g~~-igg~~~ 69 (82)
T cd03419 14 KRAKSLLKELGVKPAVVELDQH-EDGSEIQDYLQ-ELTGQRTVPNVFIGGKF-IGGCDD 69 (82)
T ss_pred HHHHHHHHHcCCCcEEEEEeCC-CChHHHHHHHH-HHhCCCCCCeEEECCEE-EcCHHH
Confidence 3456677777775331111111 11122333332 24689999999999984 655443
No 85
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=80.12 E-value=2.3 Score=27.01 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=21.9
Q ss_pred hhCCCCcccEEEE--CCee--eeccCCCHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRA 165 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~ 165 (171)
.+++|.++||+++ +|+. ...|..+.+.+.+.
T Consensus 67 ~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~ 101 (102)
T cd03005 67 SEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKEF 101 (102)
T ss_pred hhcCCCcCCEEEEEeCCCeeeEeeCCCCHHHHHhh
Confidence 3689999999876 4542 35688887776553
No 86
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=79.85 E-value=2.3 Score=31.84 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=27.7
Q ss_pred hhCCCCcccEEEECCeeeeccCCCHHHHHHHHH
Q 030793 135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 167 (171)
Q Consensus 135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~ 167 (171)
.+.+|-+||+++++|+....+..++++++.+++
T Consensus 53 ~~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~~ 85 (265)
T COG5494 53 FEKGVISVPSVFIDGELVYADPVDPEEIESILS 85 (265)
T ss_pred hhcceeecceEEEcCeEEEcCCCCHHHHHHHHc
Confidence 468999999999999966667778888888775
No 87
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=79.12 E-value=2.3 Score=27.06 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=20.7
Q ss_pred hhCCCCcccEEEE--CC-e--eeeccCCCHHHHHH
Q 030793 135 YSANISGVPHFVL--NG-K--HELSGGQPPEVYLR 164 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~-~--~~i~G~~~~~~~~~ 164 (171)
.+++|.|+|++++ +| + +...|..+.+.+.+
T Consensus 69 ~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~ 103 (105)
T cd02998 69 KKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVK 103 (105)
T ss_pred HhCCCCCcCEEEEEeCCCCCccccCCccCHHHHHh
Confidence 4689999999987 23 1 23467777776654
No 88
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=78.80 E-value=1.7 Score=27.38 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=16.7
Q ss_pred CCCcccEEEECCeeeeccCCCHHH
Q 030793 138 NISGVPHFVLNGKHELSGGQPPEV 161 (171)
Q Consensus 138 gv~gvPtfvv~~~~~i~G~~~~~~ 161 (171)
++.+||.++++|++ +.|..+...
T Consensus 54 ~~~tVP~ifi~g~~-igG~~dl~~ 76 (86)
T TIGR02183 54 PVETVPQIFVDEKH-VGGCTDFEQ 76 (86)
T ss_pred CCCCcCeEEECCEE-ecCHHHHHH
Confidence 46899999999984 766544433
No 89
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=78.61 E-value=2.7 Score=27.04 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=20.7
Q ss_pred hhCCCCcccEEEE--CC-e--eeeccCCC-HHHHHH
Q 030793 135 YSANISGVPHFVL--NG-K--HELSGGQP-PEVYLR 164 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~-~--~~i~G~~~-~~~~~~ 164 (171)
.++||.++||+++ +| + +...|..+ .+.+.+
T Consensus 67 ~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~ 102 (104)
T cd03004 67 QQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILE 102 (104)
T ss_pred HHcCCCcccEEEEEcCCCCCceEccCCCCCHHHHHh
Confidence 3689999999987 33 3 23467766 776654
No 90
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=77.15 E-value=5.7 Score=26.68 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=28.9
Q ss_pred hhCCCCcccEEEE----CCee----eeccCCCHHHHHHHHHHHh
Q 030793 135 YSANISGVPHFVL----NGKH----ELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 135 ~~~gv~gvPtfvv----~~~~----~i~G~~~~~~~~~~l~~~~ 170 (171)
..+++.++|++++ +++. .+.|..++++|...|+.+.
T Consensus 70 ~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 70 QALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred HHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 4688999999976 3443 3689999999999998764
No 91
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=76.89 E-value=5.1 Score=26.98 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=22.4
Q ss_pred hhCCCCcccEEEE--CCee-----------eeccCC-CHHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGKH-----------ELSGGQ-PPEVYLRAFQVA 169 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~-----------~i~G~~-~~~~~~~~l~~~ 169 (171)
.++||.|+|||++ +|+. ++.+.- +-+.|+.++.-+
T Consensus 62 ~~~~V~~iPTf~~fk~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 62 KMYELYDPPTVMFFFRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred HHcCCCCCCEEEEEECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 3699999999987 4542 232222 456777777654
No 92
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=76.60 E-value=3.6 Score=26.32 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=21.0
Q ss_pred hhCCCCcccEEEE--CCe--eeeccCCCHHHHHH
Q 030793 135 YSANISGVPHFVL--NGK--HELSGGQPPEVYLR 164 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~--~~i~G~~~~~~~~~ 164 (171)
.+++|.++||+++ +|+ ..+.|..+.+.|.+
T Consensus 66 ~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 66 RSQGVNSYPSLYVFPSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred HHcCCCccCEEEEEcCCCCcccCCCCCCHHHHHh
Confidence 3689999999976 454 23567777776654
No 93
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=76.55 E-value=3.6 Score=26.66 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=21.4
Q ss_pred hhCCCCcccEEEE-CCe--eeeccCCCHHHHHH
Q 030793 135 YSANISGVPHFVL-NGK--HELSGGQPPEVYLR 164 (171)
Q Consensus 135 ~~~gv~gvPtfvv-~~~--~~i~G~~~~~~~~~ 164 (171)
.+++|.|+||+++ ++. ....|..+.+.+.+
T Consensus 66 ~~~~V~~~PT~~lf~~g~~~~~~G~~~~~~l~~ 98 (100)
T cd02999 66 SRYGVVGFPTILLFNSTPRVRYNGTRTLDSLAA 98 (100)
T ss_pred HhcCCeecCEEEEEcCCceeEecCCCCHHHHHh
Confidence 4699999999976 322 23578888777665
No 94
>PTZ00062 glutaredoxin; Provisional
Probab=76.44 E-value=5.3 Score=29.79 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=21.8
Q ss_pred hCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHH
Q 030793 136 SANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQV 168 (171)
Q Consensus 136 ~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~ 168 (171)
+++|.++|||++ +|+. .+.|+. +..+...+..
T Consensus 57 d~~V~~vPtfv~~~~g~~i~r~~G~~-~~~~~~~~~~ 92 (204)
T PTZ00062 57 ADANNEYGVFEFYQNSQLINSLEGCN-TSTLVSFIRG 92 (204)
T ss_pred ccCcccceEEEEEECCEEEeeeeCCC-HHHHHHHHHH
Confidence 599999999998 4542 346764 5666665554
No 95
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=76.38 E-value=4.7 Score=27.23 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=24.8
Q ss_pred hhCCCC--cccEEEE--CCe----eeeccC-CCHHHHHHHHHH
Q 030793 135 YSANIS--GVPHFVL--NGK----HELSGG-QPPEVYLRAFQV 168 (171)
Q Consensus 135 ~~~gv~--gvPtfvv--~~~----~~i~G~-~~~~~~~~~l~~ 168 (171)
.++||. |.||+.+ +|. ....|. ++.+.|.+-|.+
T Consensus 72 ~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 72 ERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred HHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHh
Confidence 579999 9999965 452 235686 888888877654
No 96
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=74.26 E-value=6.8 Score=22.66 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccC
Q 030793 100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGG 156 (171)
Q Consensus 100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~ 156 (171)
..+..+..+.|++-..-.+.+. ....+.+.. ..|...+|+++++|+ .+.|.
T Consensus 14 ~~~~~~L~~~~i~~~~~di~~~----~~~~~~l~~-~~~~~~~P~~~~~~~-~igg~ 64 (72)
T cd02066 14 KRAKRLLESLGIEFEEIDILED----GELREELKE-LSGWPTVPQIFINGE-FIGGY 64 (72)
T ss_pred HHHHHHHHHcCCcEEEEECCCC----HHHHHHHHH-HhCCCCcCEEEECCE-EEecH
Confidence 3455667777776441112221 223333332 367789999999998 46664
No 97
>COG3084 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.71 E-value=6.5 Score=24.25 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh
Q 030793 80 NLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA 114 (171)
Q Consensus 80 ~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~ 114 (171)
++. .|.+.+|....+++-.+.|..+|.++|++..
T Consensus 8 evl-ellqp~w~k~~dlnl~q~lqkla~eagf~~~ 41 (88)
T COG3084 8 EVI-ELLQPAWQKEPDLNLLQFLQKLAKESGFDGE 41 (88)
T ss_pred HHH-HHhhHHhccCCCccHHHHHHHHHHHhccccc
Confidence 444 3667789999999989999999999999876
No 98
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=73.62 E-value=2.4 Score=26.13 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCH
Q 030793 101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPP 159 (171)
Q Consensus 101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~ 159 (171)
..+.+..+.|++-..-.++. + ... ..+. ...|..++|.++++|+ .+.|..+.
T Consensus 23 ~ak~~L~~~gi~y~~idi~~-~---~~~-~~~~-~~~g~~~vP~i~i~g~-~igG~~~l 74 (79)
T TIGR02190 23 KAKATLKEKGYDFEEIPLGN-D---ARG-RSLR-AVTGATTVPQVFIGGK-LIGGSDEL 74 (79)
T ss_pred HHHHHHHHcCCCcEEEECCC-C---hHH-HHHH-HHHCCCCcCeEEECCE-EEcCHHHH
Confidence 34556667788765212222 1 111 1111 2468899999999998 47775443
No 99
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=72.53 E-value=5.5 Score=27.50 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCccccCCCCCCcHH
Q 030793 36 IIARMTEVFRGLGLEYNMSGLTGNTLD 62 (171)
Q Consensus 36 ~~~~~~~~a~~~g~~~~~~~~~~~s~~ 62 (171)
.++.+.+-++++|+++.+.+++.++..
T Consensus 13 ~Lk~l~~~a~~~g~~~VlRG~~~~~~~ 39 (130)
T TIGR02742 13 LLKQLLDQAEALGAPLVIRGLLDNGFK 39 (130)
T ss_pred HHHHHHHHHHHhCCeEEEeCCCCCCHH
Confidence 445566667778888888888777654
No 100
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=72.45 E-value=4.3 Score=25.20 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=19.7
Q ss_pred hhCCCCcccEEEE-C-C-ee--eeccCCCHHHHHH
Q 030793 135 YSANISGVPHFVL-N-G-KH--ELSGGQPPEVYLR 164 (171)
Q Consensus 135 ~~~gv~gvPtfvv-~-~-~~--~i~G~~~~~~~~~ 164 (171)
.++||.++||+++ . + +. ...|..+.+.+.+
T Consensus 65 ~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~ 99 (101)
T cd02961 65 SEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVE 99 (101)
T ss_pred HhCCCCCCCEEEEEcCCCcccccCCCCcCHHHHHh
Confidence 4689999999976 3 3 21 2356666666654
No 101
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=71.66 E-value=5.3 Score=25.10 Aligned_cols=31 Identities=32% Similarity=0.563 Sum_probs=19.7
Q ss_pred hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAF 166 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l 166 (171)
.++|+.++||+++ +|+. .+.|. ..+.+.+.|
T Consensus 62 ~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 62 EKFEITAVPTFVFFRNGTIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred HhcCCccccEEEEEECCEEEEEEeCC-CHHHHHHhh
Confidence 4689999999987 4542 23564 345555543
No 102
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.30 E-value=6.2 Score=31.15 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=27.1
Q ss_pred hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~ 169 (171)
..+||.++||.+. +|+- -+.|.+|.+.+.+.|++.
T Consensus 91 aqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~ 129 (304)
T COG3118 91 AQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKV 129 (304)
T ss_pred HHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHh
Confidence 3699999999975 6762 246888988998888765
No 103
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=71.23 E-value=11 Score=25.68 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=22.3
Q ss_pred hhCCCCcccEEEECCeeeeccCCC-HHHHHHHH
Q 030793 135 YSANISGVPHFVLNGKHELSGGQP-PEVYLRAF 166 (171)
Q Consensus 135 ~~~gv~gvPtfvv~~~~~i~G~~~-~~~~~~~l 166 (171)
...|..+.|-.+|||+....|..| .++|.+.+
T Consensus 66 ~~~G~e~LPitlVdGeiv~~G~YPt~eEl~~~~ 98 (123)
T PF06953_consen 66 QTEGAEALPITLVDGEIVKTGRYPTNEELAEWL 98 (123)
T ss_dssp HHH-GGG-SEEEETTEEEEESS---HHHHHHHH
T ss_pred HHcCcccCCEEEECCEEEEecCCCCHHHHHHHh
Confidence 468999999999999977777654 67777654
No 104
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=69.98 E-value=8.6 Score=24.33 Aligned_cols=30 Identities=20% Similarity=0.515 Sum_probs=20.5
Q ss_pred hhCCCCcccEEEE-C-Ce---eeeccCCCHHHHHH
Q 030793 135 YSANISGVPHFVL-N-GK---HELSGGQPPEVYLR 164 (171)
Q Consensus 135 ~~~gv~gvPtfvv-~-~~---~~i~G~~~~~~~~~ 164 (171)
.++||.|+|++++ + |+ +...|..+.+.+.+
T Consensus 66 ~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~ 100 (103)
T cd03001 66 QQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVS 100 (103)
T ss_pred HHCCCCccCEEEEECCCCcceeecCCCCCHHHHHH
Confidence 3689999999976 2 31 23567777776654
No 105
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=69.55 E-value=6.2 Score=26.43 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCccccCCCCCCcHHH
Q 030793 36 IIARMTEVFRGLGLEYNMSGLTGNTLDS 63 (171)
Q Consensus 36 ~~~~~~~~a~~~g~~~~~~~~~~~s~~a 63 (171)
.++.+.+-+++.|+++.+.+++.++...
T Consensus 12 ~L~~l~~~a~~~~~~~V~RG~~~g~~~~ 39 (113)
T PF09673_consen 12 SLRNLLKQAERAGVVVVFRGFPDGSFKP 39 (113)
T ss_pred HHHHHHHHHHhCCcEEEEECCCCCCHHH
Confidence 4445555566667777777776655443
No 106
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=69.43 E-value=6.3 Score=26.34 Aligned_cols=29 Identities=14% Similarity=0.120 Sum_probs=21.4
Q ss_pred hCCCCcccEEEE--CCe--eeeccCCCHHHHHH
Q 030793 136 SANISGVPHFVL--NGK--HELSGGQPPEVYLR 164 (171)
Q Consensus 136 ~~gv~gvPtfvv--~~~--~~i~G~~~~~~~~~ 164 (171)
+++|.|+|||++ +|+ ....|..+.+.+..
T Consensus 79 ~~~I~~~PTl~lf~~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 79 QKHFFYFPVIHLYYRSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred hcCCcccCEEEEEECCccceEEeCCCCHHHHHh
Confidence 689999999986 444 24568888877764
No 107
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=68.84 E-value=7.5 Score=25.73 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=23.5
Q ss_pred hhCCCCcccEEEE--CCe--eeeccCCCHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQV 168 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~--~~i~G~~~~~~~~~~l~~ 168 (171)
.+.+|.++|||++ +|+ -.+.|+. .+.+.+.|.+
T Consensus 68 ~~~~V~~~PTf~f~k~g~~~~~~vGa~-~~~l~~~i~~ 104 (106)
T KOG0907|consen 68 KEFNVKAMPTFVFYKGGEEVDEVVGAN-KAELEKKIAK 104 (106)
T ss_pred HhcCceEeeEEEEEECCEEEEEEecCC-HHHHHHHHHh
Confidence 4799999999987 454 2457765 4477777664
No 108
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=68.68 E-value=17 Score=24.02 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCH
Q 030793 101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPP 159 (171)
Q Consensus 101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~ 159 (171)
.+..+..+.|....--.++.. ..-.++++.+.. -.|-..+|.++|+|++ |.|..+.
T Consensus 29 ~~k~ll~~~~v~~~vvELD~~-~~g~eiq~~l~~-~tg~~tvP~vFI~Gk~-iGG~~dl 84 (104)
T KOG1752|consen 29 RAKELLSDLGVNPKVVELDED-EDGSEIQKALKK-LTGQRTVPNVFIGGKF-IGGASDL 84 (104)
T ss_pred HHHHHHHhCCCCCEEEEccCC-CCcHHHHHHHHH-hcCCCCCCEEEECCEE-EcCHHHH
Confidence 366666666766541112221 122356555542 2556699999999994 6555443
No 109
>PF05819 NolX: NolX protein; InterPro: IPR008718 This family consists of Rhizobium NolX and Xanthomonas HrpF proteins. The interaction between the plant pathogen Xanthomonas campestris pv. vesicatoria (strain 85-10) and its host plants is controlled by hrp genes (hypersensitive reaction and pathogenicity), which encode a type III protein secretion system. Among type III-secreted proteins are avirulence proteins, effectors involved in the induction of plant defence reactions. HrpF is dispensable for protein secretion but required for AvrBs3 recognition in planta, is thought to function as a translocator of effector proteins into the host cell []. NolX, a Glycine max (Soybean) cultivar specificity protein, is secreted by a type III secretion system (TTSS) and shows homology to HrpF. It is not known whether NolX functions at the bacterium-plant interface or acts inside the host cell. NolX is expressed in planta only during the early stages of nodule development [].; GO: 0009877 nodulation
Probab=68.24 E-value=23 Score=30.07 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh-HhhhcCCCCChHHHHHHHH--HhhCCCCcc--c--EEEECC
Q 030793 77 KQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA-AEFLDDPNSGLNEVHEELK--KYSANISGV--P--HFVLNG 149 (171)
Q Consensus 77 ~~~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~-~~~~~~~~~~~~~v~~~~~--~~~~gv~gv--P--tfvv~~ 149 (171)
+..+.+..=..+||..|++| .++.|..++.+--++.+ ++.. ...+.+-+. ..++++.|. | +|-++|
T Consensus 452 kTL~Tin~nqd~FFg~G~~l-trdKLa~ma~D~~~~p~Vr~AA------~qLl~dplLfglLnNaitGyk~~~~FF~fgg 524 (624)
T PF05819_consen 452 KTLDTINSNQDAFFGDGKEL-TRDKLASMADDKSLDPEVREAA------KQLLSDPLLFGLLNNAITGYKTHHGFFDFGG 524 (624)
T ss_pred HHHHHhhhchhhhhCCcccc-CHHHHHHhhcCcccCHHHHHHH------HHHhccchHHHHhhcccccccCCCceeecCC
Confidence 34455666678889999888 47788888877766654 1110 011111111 146777776 7 555665
Q ss_pred eeee-ccCCCHHHHHHHHH
Q 030793 150 KHEL-SGGQPPEVYLRAFQ 167 (171)
Q Consensus 150 ~~~i-~G~~~~~~~~~~l~ 167 (171)
...+ +|..+-..|.+.++
T Consensus 525 gh~vDsg~Is~~DF~~F~~ 543 (624)
T PF05819_consen 525 GHTVDSGNISKKDFEQFYQ 543 (624)
T ss_pred CcccccCccchhhHHHHHH
Confidence 4444 45555555555444
No 110
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=67.27 E-value=19 Score=23.17 Aligned_cols=56 Identities=5% Similarity=-0.114 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHh---hCCCCcccEEEECCeeeeccCCCHHH
Q 030793 101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKY---SANISGVPHFVLNGKHELSGGQPPEV 161 (171)
Q Consensus 101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~---~~gv~gvPtfvv~~~~~i~G~~~~~~ 161 (171)
.+..+....|++-..-.++.+ .+.++.+.+. +.|-..+|-++++|+| +.|+.+...
T Consensus 21 ~v~~lL~~k~I~f~eiDI~~d----~~~r~em~~~~~~~~g~~tvPQIFi~~~~-iGg~ddl~~ 79 (92)
T cd03030 21 EVLGFLEAKKIEFEEVDISMN----EENRQWMRENVPNENGKPLPPQIFNGDEY-CGDYEAFFE 79 (92)
T ss_pred HHHHHHHHCCCceEEEecCCC----HHHHHHHHHhcCCCCCCCCCCEEEECCEE-eeCHHHHHH
Confidence 455677777887652223221 3444444431 2467889999999985 766544333
No 111
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=66.76 E-value=11 Score=32.28 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=27.2
Q ss_pred hhCCCCcccEE-EEC--Cee--eeccCCCHHHHHHHHHHH
Q 030793 135 YSANISGVPHF-VLN--GKH--ELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 135 ~~~gv~gvPtf-vv~--~~~--~i~G~~~~~~~~~~l~~~ 169 (171)
..+||.|+||+ +|+ |+. .+.|..+.+++.+.|+.+
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 36899999999 554 542 357999999999998854
No 112
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=66.54 E-value=13 Score=28.21 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=24.2
Q ss_pred hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQV 168 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~ 168 (171)
.++||.|+||+++ +|+. ...|..+.+.+.+.+.+
T Consensus 100 ~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~ 137 (224)
T PTZ00443 100 KRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALG 137 (224)
T ss_pred HHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHH
Confidence 4689999999976 4542 12466788888776654
No 113
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=65.95 E-value=9.2 Score=25.20 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEEC--Ce--eeeccCCCHHHHHHH
Q 030793 98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLN--GK--HELSGGQPPEVYLRA 165 (171)
Q Consensus 98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~--~~--~~i~G~~~~~~~~~~ 165 (171)
+.+.+.+.+++.+++.. .+.+++ ..+. ..++|.++|+++|- |+ +...|..+.+.+.+.
T Consensus 60 ~~~~~~~~~~~~~~~~~--~~~d~~---~~~~-----~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 60 DDGAVARFMQKKGYGFP--VINDPD---GVIS-----ARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred CHHHHHHHHHHcCCCcc--EEECCC---cHHH-----HhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 57788888888887643 222311 1122 25899999998763 32 345788888887664
No 114
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=65.82 E-value=10 Score=29.55 Aligned_cols=72 Identities=17% Similarity=0.095 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCchhHhhhcCC--CCChHHHHHHHHHhhCCCCcccEEEEC---C-ee--eeccCCCHHHHHHHHHHHh
Q 030793 99 KEFLVECARKVGVEGAAEFLDDP--NSGLNEVHEELKKYSANISGVPHFVLN---G-KH--ELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 99 ~~~L~~ia~~~Gld~~~~~~~~~--~~~~~~v~~~~~~~~~gv~gvPtfvv~---~-~~--~i~G~~~~~~~~~~l~~~~ 170 (171)
...|.+++++.|+..-.-.+++. ..+-....+.-...++||.++||+++- | ++ ...|..+.++|.+.|..+.
T Consensus 185 ~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 185 APILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAA 264 (271)
T ss_pred hHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 45788888888864320001110 000000011112357999999999763 2 22 2348889999988887654
No 115
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=65.37 E-value=14 Score=25.99 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEE-EEC--Cee--eeccCCCHHHHHHHHHHHh
Q 030793 98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHF-VLN--GKH--ELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtf-vv~--~~~--~i~G~~~~~~~~~~l~~~~ 170 (171)
+.+.+.+..++.|++-. .+.+.. ..+. ..+|+.++|++ +++ |+. ...|..+.+++.+.+++++
T Consensus 105 ~~~~~~~~~~~~~~~~~--~~~d~~---~~~~-----~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~~ 172 (173)
T PRK03147 105 TELAVKNFVNRYGLTFP--VAIDKG---RQVI-----DAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKIK 172 (173)
T ss_pred CHHHHHHHHHHhCCCce--EEECCc---chHH-----HHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHhc
Confidence 44567777777776543 122210 1111 35899999975 564 442 2368888899999888764
No 116
>smart00594 UAS UAS domain.
Probab=65.23 E-value=8.9 Score=25.74 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=23.5
Q ss_pred hhCCCCcccEEEEC---C-e--e----eeccCCCHHHHHHHH
Q 030793 135 YSANISGVPHFVLN---G-K--H----ELSGGQPPEVYLRAF 166 (171)
Q Consensus 135 ~~~gv~gvPtfvv~---~-~--~----~i~G~~~~~~~~~~l 166 (171)
..+++.|+|++++= + . . .+.|..+.++|...|
T Consensus 80 ~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 80 QFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 36899999999872 2 1 1 357888999888765
No 117
>PRK10824 glutaredoxin-4; Provisional
Probab=64.07 E-value=25 Score=23.66 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCchh-HhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHH
Q 030793 101 FLVECARKVGVEGA-AEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEV 161 (171)
Q Consensus 101 ~L~~ia~~~Gld~~-~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~ 161 (171)
...++..+.|++-. -....+ .++++.+.. ..|-.-||.++|||+ .|.|..+...
T Consensus 35 ~ak~lL~~~~i~~~~idi~~d-----~~~~~~l~~-~sg~~TVPQIFI~G~-~IGG~ddl~~ 89 (115)
T PRK10824 35 QAVQALSACGERFAYVDILQN-----PDIRAELPK-YANWPTFPQLWVDGE-LVGGCDIVIE 89 (115)
T ss_pred HHHHHHHHcCCCceEEEecCC-----HHHHHHHHH-HhCCCCCCeEEECCE-EEcChHHHHH
Confidence 45556667777654 222222 244444433 357789999999998 4777654433
No 118
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=64.02 E-value=13 Score=26.26 Aligned_cols=32 Identities=13% Similarity=0.027 Sum_probs=24.3
Q ss_pred CCCcccEEEEC---Ce--e-eeccCCCHHHHHHHHHHH
Q 030793 138 NISGVPHFVLN---GK--H-ELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 138 gv~gvPtfvv~---~~--~-~i~G~~~~~~~~~~l~~~ 169 (171)
|+.|+||.++= |+ + ...|..+.+.+.+.|+++
T Consensus 115 ~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 115 RPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 89999998763 33 2 346988999999888765
No 119
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.63 E-value=13 Score=28.72 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=23.6
Q ss_pred hhCCCCcccEEEE--CCe--eeeccCCCHHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~--~~i~G~~~~~~~~~~l~~~ 169 (171)
..+||...|||++ ||. -.+.|+ +...|++.+.+.
T Consensus 68 a~~gV~amPTFiff~ng~kid~~qGA-d~~gLe~kv~~~ 105 (288)
T KOG0908|consen 68 ATNGVNAMPTFIFFRNGVKIDQIQGA-DASGLEEKVAKY 105 (288)
T ss_pred hhcCcccCceEEEEecCeEeeeecCC-CHHHHHHHHHHH
Confidence 4799999999986 553 235676 456677766653
No 120
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=62.71 E-value=18 Score=24.64 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=10.7
Q ss_pred hCCCCcccEEEE
Q 030793 136 SANISGVPHFVL 147 (171)
Q Consensus 136 ~~gv~gvPtfvv 147 (171)
.+|+.|+||+++
T Consensus 75 ~~~~~G~Pt~vf 86 (124)
T cd02955 75 MTGQGGWPLNVF 86 (124)
T ss_pred hcCCCCCCEEEE
Confidence 579999999987
No 121
>PTZ00102 disulphide isomerase; Provisional
Probab=60.40 E-value=17 Score=30.23 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=26.5
Q ss_pred hhCCCCcccEEEE--CCe-eeeccCCCHHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGK-HELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~-~~i~G~~~~~~~~~~l~~~ 169 (171)
.++||.|+||+++ +|+ ....|..+.+.|.+.+++.
T Consensus 100 ~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 100 QEFGVRGYPTIKFFNKGNPVNYSGGRTADGIVSWIKKL 137 (477)
T ss_pred HhcCCCcccEEEEEECCceEEecCCCCHHHHHHHHHHh
Confidence 4689999999976 333 3457888999988887764
No 122
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=58.56 E-value=19 Score=26.41 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=21.9
Q ss_pred hCCCCccc-E-EEEC--Ce--eeeccCCCHHHHHHHHH
Q 030793 136 SANISGVP-H-FVLN--GK--HELSGGQPPEVYLRAFQ 167 (171)
Q Consensus 136 ~~gv~gvP-t-fvv~--~~--~~i~G~~~~~~~~~~l~ 167 (171)
..|+.|.| | |||| |+ +...|..+.+++.+.+.
T Consensus 140 ~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 140 AWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVIS 177 (184)
T ss_pred hcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 68999995 5 5776 43 34578887777766433
No 123
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=57.23 E-value=19 Score=29.58 Aligned_cols=35 Identities=17% Similarity=0.393 Sum_probs=26.4
Q ss_pred hhCCCCcccEEEE--CCe---eeeccCCCHHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGK---HELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~---~~i~G~~~~~~~~~~l~~~ 169 (171)
.++||.|+||+++ +|+ +...|..+.+.|.+.+.+.
T Consensus 69 ~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 69 QKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQ 108 (462)
T ss_pred HhCCCccccEEEEEeCCccceeEecCCCCHHHHHHHHHHh
Confidence 3689999999976 354 3457888888888877654
No 124
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=57.04 E-value=24 Score=23.82 Aligned_cols=39 Identities=13% Similarity=0.190 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCccccCCCCCCcHHHHHHHHHHHhcC
Q 030793 36 IIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 74 (171)
Q Consensus 36 ~~~~~~~~a~~~g~~~~~~~~~~~s~~a~r~~~~a~~~g 74 (171)
..+...+|-+..|+++.+..+..+....-.+..+.+..|
T Consensus 13 t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 13 TCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred HHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 455666777888888887665434344445555666555
No 125
>PTZ00256 glutathione peroxidase; Provisional
Probab=56.66 E-value=21 Score=25.74 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=25.3
Q ss_pred CCCCcccE----EEEC--Cee--eeccCCCHHHHHHHHHHHhC
Q 030793 137 ANISGVPH----FVLN--GKH--ELSGGQPPEVYLRAFQVAAN 171 (171)
Q Consensus 137 ~gv~gvPt----fvv~--~~~--~i~G~~~~~~~~~~l~~~~~ 171 (171)
.++.++|+ |+|| |+. ...|..+.+.+.+.|+++.+
T Consensus 140 ~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 140 NEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred ccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 47889994 9997 432 34577788888888887653
No 126
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=56.12 E-value=20 Score=22.64 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=23.6
Q ss_pred hhCCCC--cccEEEEC----C-eeeeccC-CCHHHHHHHHHHH
Q 030793 135 YSANIS--GVPHFVLN----G-KHELSGG-QPPEVYLRAFQVA 169 (171)
Q Consensus 135 ~~~gv~--gvPtfvv~----~-~~~i~G~-~~~~~~~~~l~~~ 169 (171)
..+|+. ++|++++- | +|...+. .+.+.+.+.++..
T Consensus 60 ~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 60 EYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred HHcCCChhhCCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence 468998 99999872 2 4444433 3778888777653
No 127
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=55.85 E-value=18 Score=27.01 Aligned_cols=33 Identities=18% Similarity=0.130 Sum_probs=23.8
Q ss_pred hhCCCCcccEEEEC--Cee-eeccCCCHHHHHHHHH
Q 030793 135 YSANISGVPHFVLN--GKH-ELSGGQPPEVYLRAFQ 167 (171)
Q Consensus 135 ~~~gv~gvPtfvv~--~~~-~i~G~~~~~~~~~~l~ 167 (171)
.+++|..||+||+. ..| .|.|..+...-.+.|.
T Consensus 156 ~~F~I~~VPafVv~C~~~yD~I~GNIsl~~ALe~iA 191 (212)
T PRK13730 156 SQYGIRSVPALVVFCSQGYDIIRGNLRVGQALEKVA 191 (212)
T ss_pred HhcCCccccEEEEEcCCCCCEEEecccHHHHHHHHH
Confidence 57999999999995 233 6789888765444443
No 128
>PLN02412 probable glutathione peroxidase
Probab=55.78 E-value=25 Score=24.93 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=23.3
Q ss_pred CCCcccE-EEEC--Cee--eeccCCCHHHHHHHHHHHh
Q 030793 138 NISGVPH-FVLN--GKH--ELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 138 gv~gvPt-fvv~--~~~--~i~G~~~~~~~~~~l~~~~ 170 (171)
++.+.|+ |+|+ |+. ...|..+.+.+.+.|+++.
T Consensus 127 ~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 127 AIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred CcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4667787 6675 442 3468888888988888765
No 129
>PTZ00062 glutaredoxin; Provisional
Probab=55.30 E-value=31 Score=25.72 Aligned_cols=57 Identities=23% Similarity=0.342 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCchh-HhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHH
Q 030793 100 EFLVECARKVGVEGA-AEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYL 163 (171)
Q Consensus 100 ~~L~~ia~~~Gld~~-~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~ 163 (171)
..+.++..+.|++-. -.+.++ .++++.+.. -.|-..+|.++|+|+ .|.|..+...+.
T Consensus 132 ~~~k~~L~~~~i~y~~~DI~~d-----~~~~~~l~~-~sg~~TvPqVfI~G~-~IGG~d~l~~l~ 189 (204)
T PTZ00062 132 NAVVNMLNSSGVKYETYNIFED-----PDLREELKV-YSNWPTYPQLYVNGE-LIGGHDIIKELY 189 (204)
T ss_pred HHHHHHHHHcCCCEEEEEcCCC-----HHHHHHHHH-HhCCCCCCeEEECCE-EEcChHHHHHHH
Confidence 457788888888765 223222 345444443 346688999999998 476765544443
No 130
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=54.17 E-value=16 Score=24.28 Aligned_cols=56 Identities=27% Similarity=0.393 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCccc-EEEEC--Ce--eeeccCCCHHHH
Q 030793 98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVP-HFVLN--GK--HELSGGQPPEVY 162 (171)
Q Consensus 98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvP-tfvv~--~~--~~i~G~~~~~~~ 162 (171)
+.+.+++++++.+++-. ..+.+.. ..+ ...+|+.++| +|+|+ |+ +...|..+.+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~-~~~~D~~---~~~-----~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 66 NPENALAWLARHGNPYA-AVGFDPD---GRV-----GIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CHHHHHHHHHhcCCCCc-eEEECCc---chH-----HHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 45566667777666432 1111210 111 1358999999 77775 44 234687775543
No 131
>PTZ00051 thioredoxin; Provisional
Probab=53.85 E-value=8.5 Score=24.23 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=18.4
Q ss_pred hhCCCCcccEEEE--CCee--eeccCCCHHHHH
Q 030793 135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYL 163 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~ 163 (171)
.++|+.|+||+++ +|+. .+.|. ..+.+.
T Consensus 65 ~~~~v~~~Pt~~~~~~g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 65 EKENITSMPTFKVFKNGSVVDTLLGA-NDEALK 96 (98)
T ss_pred HHCCCceeeEEEEEeCCeEEEEEeCC-CHHHhh
Confidence 4699999999987 3542 34665 344443
No 132
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=53.75 E-value=29 Score=28.76 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=32.2
Q ss_pred HHHHHHHcCCchhHhhhcCCCCChHHHHHHHH----HhhCCCCcccEEEECCeeeeccCCCHH
Q 030793 102 LVECARKVGVEGAAEFLDDPNSGLNEVHEELK----KYSANISGVPHFVLNGKHELSGGQPPE 160 (171)
Q Consensus 102 L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~----~~~~gv~gvPtfvv~~~~~i~G~~~~~ 160 (171)
..++..+.|++-..-.++. +....+..++.. ....|..+||+++|+|+ .+.|..+..
T Consensus 18 aK~~L~~~gi~~~~idi~~-~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~-~igGf~~l~ 78 (410)
T PRK12759 18 AKSWFGANDIPFTQISLDD-DVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDV-HIGGYDNLM 78 (410)
T ss_pred HHHHHHHCCCCeEEEECCC-ChhHHHHHHHHhhccccccCCCCccCeEEECCE-EEeCchHHH
Confidence 5567777888755212222 111112222221 12468899999999998 477765543
No 133
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=51.89 E-value=25 Score=25.17 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=24.4
Q ss_pred CCcccEEEECCeeeeccCCCHHHHHHHHHHHh
Q 030793 139 ISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 139 v~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~~ 170 (171)
..-.|.++|||+ +.|..+++.+.+.|++..
T Consensus 128 C~~AP~vmind~--~~~~lt~e~l~eil~~~~ 157 (160)
T COG1905 128 CGQAPVVMINDD--VYGRLTPEKLEEILEKLK 157 (160)
T ss_pred cccCCEEEECCc--hhccCCHHHHHHHHHHHh
Confidence 355799999997 566689999999998764
No 134
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=50.74 E-value=19 Score=22.67 Aligned_cols=29 Identities=17% Similarity=0.418 Sum_probs=19.1
Q ss_pred hCCCCcccEEEE--CCe----eeeccCCCHHHHHH
Q 030793 136 SANISGVPHFVL--NGK----HELSGGQPPEVYLR 164 (171)
Q Consensus 136 ~~gv~gvPtfvv--~~~----~~i~G~~~~~~~~~ 164 (171)
..++.++||+++ +|+ ....|..+.+.|.+
T Consensus 68 ~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~ 102 (104)
T cd02995 68 EFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIK 102 (104)
T ss_pred hccCCCCCEEEEEcCCCcCCceEccCCcCHHHHHh
Confidence 577899999986 232 23467667666654
No 135
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=50.43 E-value=9 Score=25.39 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=11.4
Q ss_pred hhCCCCcccEEEE
Q 030793 135 YSANISGVPHFVL 147 (171)
Q Consensus 135 ~~~gv~gvPtfvv 147 (171)
.++||.++||+++
T Consensus 72 ~~~~i~~~Pt~~l 84 (114)
T cd02992 72 RDFGVTGYPTLRY 84 (114)
T ss_pred HhCCCCCCCEEEE
Confidence 4689999999987
No 136
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=49.61 E-value=39 Score=17.76 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=21.2
Q ss_pred EEEECCeeeeccCCCHHHHHHHHHHHhC
Q 030793 144 HFVLNGKHELSGGQPPEVYLRAFQVAAN 171 (171)
Q Consensus 144 tfvv~~~~~i~G~~~~~~~~~~l~~~~~ 171 (171)
|++.+|+..+....+.+.-.++|.-+.|
T Consensus 9 TIfY~G~V~Vfd~v~~~Ka~~im~lA~r 36 (36)
T PF06200_consen 9 TIFYGGQVCVFDDVPPDKAQEIMLLASR 36 (36)
T ss_pred EEEECCEEEEeCCCCHHHHHHHHHHhcC
Confidence 6788999777777888887777765543
No 137
>PTZ00102 disulphide isomerase; Provisional
Probab=49.55 E-value=25 Score=29.18 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=26.6
Q ss_pred hCCCCcccEEEE--CC-ee--eeccCCCHHHHHHHHHHHh
Q 030793 136 SANISGVPHFVL--NG-KH--ELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 136 ~~gv~gvPtfvv--~~-~~--~i~G~~~~~~~~~~l~~~~ 170 (171)
+.++.|+||+++ +| +. .+.|..+.+.+.+.|++..
T Consensus 426 ~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 426 EFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred cCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcC
Confidence 688999999976 23 32 3579999999999887643
No 138
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=47.77 E-value=30 Score=25.78 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=20.1
Q ss_pred ccEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793 142 VPHFVLNGKHELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 142 vPtfvv~~~~~i~G~~~~~~~~~~l~~~ 169 (171)
||.|||||+....|. ....+..+|+++
T Consensus 71 TPQ~vVnG~~~~~g~-~~~~~~~ai~~~ 97 (202)
T PF06764_consen 71 TPQVVVNGREHRVGS-DRAAVEAAIQAA 97 (202)
T ss_dssp SSEEEETTTEEEETT--HHHHHHHHHHH
T ss_pred CCeEEECCeeeeecc-CHHHHHHHHHHh
Confidence 999999998666664 566777777664
No 139
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=47.52 E-value=40 Score=23.61 Aligned_cols=35 Identities=6% Similarity=0.019 Sum_probs=22.8
Q ss_pred hCCCCcccEEE-E--CCeee---ecc--------CCCHHHHHHHHHHHh
Q 030793 136 SANISGVPHFV-L--NGKHE---LSG--------GQPPEVYLRAFQVAA 170 (171)
Q Consensus 136 ~~gv~gvPtfv-v--~~~~~---i~G--------~~~~~~~~~~l~~~~ 170 (171)
.++|.+.||++ + +|+-. .+| ..+.++|.+.++.+.
T Consensus 72 ~y~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 72 MYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred HcCccCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 68899776554 3 44422 356 567888888887654
No 140
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=47.01 E-value=26 Score=24.60 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHHHHHH
Q 030793 100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV 168 (171)
Q Consensus 100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~ 168 (171)
..-.+..+..|+.......++ ...+++++.- .....|-=|.||||+ .|.|..|.+.+.+++..
T Consensus 40 ~~w~~~mk~~Gf~Vk~~~~~d----~~alK~~~gI-p~e~~SCHT~VI~Gy-~vEGHVPa~aI~~ll~~ 102 (149)
T COG3019 40 DEWAQHMKANGFEVKVVETDD----FLALKRRLGI-PYEMQSCHTAVINGY-YVEGHVPAEAIARLLAE 102 (149)
T ss_pred HHHHHHHHhCCcEEEEeecCc----HHHHHHhcCC-ChhhccccEEEEcCE-EEeccCCHHHHHHHHhC
Confidence 344556667777643111111 1344444221 111245559999997 49999999998888764
No 141
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=46.58 E-value=36 Score=29.46 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=28.8
Q ss_pred hhCCCCcccEEEEC---Ce--eeeccCCCHHHHHHHHHHHh
Q 030793 135 YSANISGVPHFVLN---GK--HELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 135 ~~~gv~gvPtfvv~---~~--~~i~G~~~~~~~~~~l~~~~ 170 (171)
.++|+.|+|++++= |+ -.+.|-.+.+.|++.++++.
T Consensus 528 k~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 528 KRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred HHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 57999999999883 22 24678889999999998764
No 142
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=46.02 E-value=31 Score=23.21 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=23.5
Q ss_pred hhCCCCcccEEEE--CCee-----------eeccCC-CHHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGKH-----------ELSGGQ-PPEVYLRAFQVA 169 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~-----------~i~G~~-~~~~~~~~l~~~ 169 (171)
..++|.+.|||++ +|+. ++.|.- +-++|..+++.+
T Consensus 62 ~~y~I~amPtfvffkngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 62 QYFDISYIPSTIFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred HhcCceeCcEEEEEECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 3689999999987 4532 344443 457788877754
No 143
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=44.42 E-value=15 Score=24.06 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=13.2
Q ss_pred hhCCCCcccEEEE--CCe
Q 030793 135 YSANISGVPHFVL--NGK 150 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~ 150 (171)
.+++|.++||+++ +|+
T Consensus 70 ~~~~i~~~Pt~~~f~~G~ 87 (113)
T cd02957 70 NYLDIKVLPTLLVYKNGE 87 (113)
T ss_pred HhcCCCcCCEEEEEECCE
Confidence 4799999999987 565
No 144
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.72 E-value=31 Score=26.95 Aligned_cols=58 Identities=12% Similarity=0.140 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHH
Q 030793 101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPE 160 (171)
Q Consensus 101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~ 160 (171)
.++.|.+..|+--++..++-+..+.++++.-+.. +...-..|-++|.|+| |.|++..-
T Consensus 152 ~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~-~~~~~~LPrVFV~Gry-IGgaeeV~ 209 (281)
T KOG2824|consen 152 AVRAILESFRVKVDERDVSMDSEFREELQELLGE-DEKAVSLPRVFVKGRY-IGGAEEVV 209 (281)
T ss_pred HHHHHHHhCceEEEEecccccHHHHHHHHHHHhc-ccccCccCeEEEccEE-eccHHHhh
Confidence 3556666666644322222111234444443332 3456778999999987 77776443
No 145
>PHA01083 hypothetical protein
Probab=41.84 E-value=79 Score=22.34 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=20.0
Q ss_pred hhcC-CCCCCHHHHHHHHHHcCCchh
Q 030793 90 FTQG-KYIGDKEFLVECARKVGVEGA 114 (171)
Q Consensus 90 ~~~g-~~i~~~~~L~~ia~~~Gld~~ 114 (171)
|..| +..-+++....+|+.+|+|..
T Consensus 36 ~R~G~r~~i~de~A~~LAe~aGiDp~ 61 (149)
T PHA01083 36 MRTGVRTYISDEEAIFLAESAGIDPE 61 (149)
T ss_pred HHcCCCCCCCHHHHHHHHHHhCCCHH
Confidence 6678 766677788889999999975
No 146
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=41.56 E-value=49 Score=20.68 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=19.9
Q ss_pred CcccEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793 140 SGVPHFVLNGKHELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 140 ~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~ 169 (171)
.-.|+-+|||+ .|.| .+.+++.+.|.+.
T Consensus 44 ~~~pFAlVnG~-~V~A-~t~eeL~~kI~~~ 71 (78)
T PF07293_consen 44 AKKPFALVNGE-IVAA-ETAEELLEKIKEK 71 (78)
T ss_pred CCCccEEECCE-EEec-CCHHHHHHHHHHH
Confidence 34688899998 4554 6778877777654
No 147
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=41.37 E-value=39 Score=18.97 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=21.0
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHcCCchh
Q 030793 84 ELFLGYFTQGKYIGDKEFLVECARKVGVEGA 114 (171)
Q Consensus 84 ~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~ 114 (171)
.+++.+|..+..+ +.+....||..+||+..
T Consensus 13 ~~L~~~f~~~~~p-~~~~~~~la~~l~l~~~ 42 (57)
T PF00046_consen 13 KVLEEYFQENPYP-SKEEREELAKELGLTER 42 (57)
T ss_dssp HHHHHHHHHSSSC-HHHHHHHHHHHHTSSHH
T ss_pred HHHHHHHHHhccc-ccccccccccccccccc
Confidence 3444455555554 56779999999999875
No 148
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=41.09 E-value=46 Score=31.20 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=27.0
Q ss_pred hCCCCcccEEEE---CCee--eeccCCCHHHHHHHHHHHh
Q 030793 136 SANISGVPHFVL---NGKH--ELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 136 ~~gv~gvPtfvv---~~~~--~i~G~~~~~~~~~~l~~~~ 170 (171)
++||.|+||+++ +|+. .+.|....+.+.+.|+++.
T Consensus 497 ~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred hcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence 689999999976 3542 3578888889998888763
No 149
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.89 E-value=23 Score=29.14 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=24.8
Q ss_pred hCCCCcccEEEECCeeeeccCCCHHHHHHHHH
Q 030793 136 SANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 167 (171)
Q Consensus 136 ~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~ 167 (171)
..+|-+|||+++||+..-+|....+++...|.
T Consensus 164 ar~IMaVPtvflnGe~fg~GRmtleeilaki~ 195 (520)
T COG3634 164 ARNIMAVPTVFLNGEEFGQGRMTLEEILAKID 195 (520)
T ss_pred hccceecceEEEcchhhcccceeHHHHHHHhc
Confidence 57899999999999854467777777766554
No 150
>PF04214 DUF411: Protein of unknown function, DUF; InterPro: IPR007332 The function of the members of this bacterial protein family is unknown. Some members may be involved in conferring cation resistance.
Probab=40.30 E-value=51 Score=20.15 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=24.9
Q ss_pred CCCCcccEEEECCeeeeccCCCHHHHHHHHHH
Q 030793 137 ANISGVPHFVLNGKHELSGGQPPEVYLRAFQV 168 (171)
Q Consensus 137 ~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~ 168 (171)
....+--|-+++| |.|.|-.|.+.+.++|++
T Consensus 21 ~~l~SCHTa~v~g-y~iEGHVPa~~I~~lL~e 51 (70)
T PF04214_consen 21 PELASCHTAVVGG-YVIEGHVPADDIKRLLAE 51 (70)
T ss_pred chhccccEEEECC-EEEEccCCHHHHHHHHhc
Confidence 3446677999987 689999999999988864
No 151
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=39.69 E-value=46 Score=20.19 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=19.3
Q ss_pred CcccEEEECCeeeeccCCCHHHHHHHHH
Q 030793 140 SGVPHFVLNGKHELSGGQPPEVYLRAFQ 167 (171)
Q Consensus 140 ~gvPtfvv~~~~~i~G~~~~~~~~~~l~ 167 (171)
.--|.++||++ +.+..+++.+.++++
T Consensus 45 ~~gP~v~V~~~--~~~~~t~~~i~~~~~ 70 (72)
T cd03082 45 ERAPAALVGQR--PVDGATPAAVAAAVE 70 (72)
T ss_pred CCCCeEEECCE--EeCCcCHHHHHHHHh
Confidence 45799999997 455567887777665
No 152
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=38.69 E-value=14 Score=24.73 Aligned_cols=33 Identities=12% Similarity=0.296 Sum_probs=18.8
Q ss_pred hCCCCc--ccEEEE---CCee-----eeccCCCHHHHHHHHHH
Q 030793 136 SANISG--VPHFVL---NGKH-----ELSGGQPPEVYLRAFQV 168 (171)
Q Consensus 136 ~~gv~g--vPtfvv---~~~~-----~i~G~~~~~~~~~~l~~ 168 (171)
.+++.| +|||++ +|+. ...|......|...|+.
T Consensus 69 ~~~~~g~~vPt~~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~~ 111 (117)
T cd02959 69 EFSPDGGYIPRILFLDPSGDVHPEIINKKGNPNYKYFYSSAAQ 111 (117)
T ss_pred hcccCCCccceEEEECCCCCCchhhccCCCCccccccCCCHHH
Confidence 456665 999987 3442 23466655555544443
No 153
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=38.66 E-value=44 Score=25.98 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=22.3
Q ss_pred HHHHHHHHcCCchh--HhhhcCCCCChHHHHHHH
Q 030793 101 FLVECARKVGVEGA--AEFLDDPNSGLNEVHEEL 132 (171)
Q Consensus 101 ~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~ 132 (171)
.+.+||+.+|++.. ..+|++.....++.++..
T Consensus 3 ti~dIA~~agvS~~TVSrvLn~~~~vs~~tr~rV 36 (329)
T TIGR01481 3 TIYDVAREAGVSMATVSRVVNGNPNVKPATRKKV 36 (329)
T ss_pred cHHHHHHHhCCCHHHHHHHhCCCCCCCHHHHHHH
Confidence 47889999999886 467766444566666543
No 154
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=38.63 E-value=72 Score=17.70 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=22.3
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh
Q 030793 83 EELFLGYFTQGKYIGDKEFLVECARKVGVEGA 114 (171)
Q Consensus 83 ~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~ 114 (171)
..+.+++|..... .+.+.+..++..+|++..
T Consensus 12 ~~~Le~~f~~~~~-P~~~~~~~la~~~~l~~~ 42 (59)
T cd00086 12 LEELEKEFEKNPY-PSREEREELAKELGLTER 42 (59)
T ss_pred HHHHHHHHHhCCC-CCHHHHHHHHHHHCcCHH
Confidence 4455556666554 467789999999999875
No 155
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=38.46 E-value=22 Score=23.50 Aligned_cols=16 Identities=44% Similarity=0.640 Sum_probs=13.0
Q ss_pred hhCCCCcccEEEE--CCe
Q 030793 135 YSANISGVPHFVL--NGK 150 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~ 150 (171)
.+++|.++||+++ +|+
T Consensus 69 ~~~~v~~vPt~l~fk~G~ 86 (113)
T cd02989 69 EKLNIKVLPTVILFKNGK 86 (113)
T ss_pred HHCCCccCCEEEEEECCE
Confidence 4699999999987 564
No 156
>PRK13669 hypothetical protein; Provisional
Probab=38.23 E-value=63 Score=20.22 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=20.6
Q ss_pred CcccEEEECCeeeeccCCCHHHHHHHHHHHh
Q 030793 140 SGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 140 ~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~~ 170 (171)
.-.|+-+|||+ .|.| .+.+++.+.|.+..
T Consensus 44 ~~~~FAlVng~-~V~a-~t~eeL~~kI~~~i 72 (78)
T PRK13669 44 SEGLFALVNGE-VVEG-ETPEELVENIYAHL 72 (78)
T ss_pred ccCceEEECCe-Eeec-CCHHHHHHHHHHHH
Confidence 34688899998 4665 57788877776543
No 157
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=37.81 E-value=48 Score=20.41 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=20.1
Q ss_pred CcccEEEECCeeeeccCCCHHHHHHHHHH
Q 030793 140 SGVPHFVLNGKHELSGGQPPEVYLRAFQV 168 (171)
Q Consensus 140 ~gvPtfvv~~~~~i~G~~~~~~~~~~l~~ 168 (171)
.-.|.++|||+ +.+..+++.+.+++++
T Consensus 53 ~~gP~~~v~~~--~~~~~~~e~i~~il~~ 79 (80)
T cd03081 53 ACSPAAMIDGE--VHGRVDPEKFDALLAE 79 (80)
T ss_pred CCCCEEEECCE--EECCCCHHHHHHHHHc
Confidence 44799999887 5555678888887764
No 158
>PHA01976 helix-turn-helix protein
Probab=37.42 E-value=51 Score=19.12 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=20.8
Q ss_pred hhcCCCCCCHHHHHHHHHHcCCchh
Q 030793 90 FTQGKYIGDKEFLVECARKVGVEGA 114 (171)
Q Consensus 90 ~~~g~~i~~~~~L~~ia~~~Gld~~ 114 (171)
|+.|....+.+.+..++..+|++.+
T Consensus 35 ~e~g~~~p~~~~l~~ia~~l~v~~~ 59 (67)
T PHA01976 35 FEADKRLPNLKTLLRLADALGVTLD 59 (67)
T ss_pred HHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 6667766788899999999999876
No 159
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=37.05 E-value=81 Score=22.83 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEE-EC--CeeeeccC-CCHHHHHHHHHHH
Q 030793 97 GDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFV-LN--GKHELSGG-QPPEVYLRAFQVA 169 (171)
Q Consensus 97 ~~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfv-v~--~~~~i~G~-~~~~~~~~~l~~~ 169 (171)
.+.+...+++++.+++.. .+.. ...+ ...+|+.++|+.+ ++ |+..-.|. ...+.+.++++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~--~~~~----~~~i-----~~~y~v~~~P~~~lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 113 GTPAEHRRFLKDHELGGE--RYVV----SAEI-----GMAFQVGKIPYGVLLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred CCHHHHHHHHHhcCCCcc--eeec----hhHH-----HHhccCCccceEEEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 346677778888777532 0111 0111 1368999999755 45 54322343 3456677766654
No 160
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=36.88 E-value=47 Score=26.11 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=22.3
Q ss_pred HHHHHHHHcCCchh--HhhhcCCCCChHHHHHHH
Q 030793 101 FLVECARKVGVEGA--AEFLDDPNSGLNEVHEEL 132 (171)
Q Consensus 101 ~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~ 132 (171)
.+.+||+.+|++.. ..+|+......++.++..
T Consensus 3 ti~dIA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV 36 (343)
T PRK10727 3 TIKDVARLAGVSVATVSRVINNSPKASEASRLAV 36 (343)
T ss_pred CHHHHHHHhCCCHHHHHHHhCCCCCCCHHHHHHH
Confidence 47899999999886 467766444566666544
No 161
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=36.68 E-value=63 Score=22.29 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=22.4
Q ss_pred Cccc-----EEEEC--Cee--eeccCCCHHHHHHHHHHH
Q 030793 140 SGVP-----HFVLN--GKH--ELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 140 ~gvP-----tfvv~--~~~--~i~G~~~~~~~~~~l~~~ 169 (171)
.+.| ||+|+ |+. ...|..+.+.+.+.|+++
T Consensus 114 ~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 114 KKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 4689 79997 442 346888899999888765
No 162
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=36.27 E-value=25 Score=21.86 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEE
Q 030793 97 GDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL 147 (171)
Q Consensus 97 ~~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv 147 (171)
.+.+...+..++.+.+...-...+ .. ... ....++|.++|++++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~-l~~~~~i~~iP~~~l 88 (95)
T PF13905_consen 45 EDEEEWKKFLKKNNFPWYNVPFDD-----DN-NSE-LLKKYGINGIPTLVL 88 (95)
T ss_dssp SSHHHHHHHHHTCTTSSEEEETTT-----HH-HHH-HHHHTT-TSSSEEEE
T ss_pred CCHHHHHHHHHhcCCCceEEeeCc-----ch-HHH-HHHHCCCCcCCEEEE
Confidence 345566677776655433101111 11 111 124689999999987
No 163
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=36.12 E-value=35 Score=22.48 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.0
Q ss_pred CChHHHHHHHHHHHHHhcCCccccC
Q 030793 30 GSQNQGIIARMTEVFRGLGLEYNMS 54 (171)
Q Consensus 30 g~~~~~~~~~~~~~a~~~g~~~~~~ 54 (171)
||+.+|+.+.+++.+...|+|+..-
T Consensus 55 GPQv~y~~~~~~~~~~~~giPV~vI 79 (102)
T COG1440 55 GPQVRYMLKQLKEAAEEKGIPVEVI 79 (102)
T ss_pred ChHHHHHHHHHHHHhcccCCCeEEe
Confidence 5699999999999999999987653
No 164
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=35.93 E-value=2.1e+02 Score=22.22 Aligned_cols=91 Identities=14% Similarity=0.127 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHH----hhcCCCCCC---HHHHHHHHHHcCCchh-----HhhhcCCCCChHHHHHHHHHhhCCCCcccE
Q 030793 77 KQHNLAEELFLGY----FTQGKYIGD---KEFLVECARKVGVEGA-----AEFLDDPNSGLNEVHEELKKYSANISGVPH 144 (171)
Q Consensus 77 ~~~~~~~~l~~a~----~~~g~~i~~---~~~L~~ia~~~Gld~~-----~~~~~~~~~~~~~v~~~~~~~~~gv~gvPt 144 (171)
...+++..|.+.+ |-++.+.-. ..+|..++.+.|++.- ...+.+ .-.-..+.-.+.++||.-||+
T Consensus 140 ~~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~---fp~~~~d~gqa~~l~v~~~Pa 216 (256)
T TIGR02739 140 QKEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPG---LPNSRSDSGQAQHLGVKYFPA 216 (256)
T ss_pred HHHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCC---CCCccCChHHHHhcCCccCce
Confidence 4566777776663 445554332 3578889999998753 111111 111111222345799999999
Q ss_pred EEEC----Cee-ee-ccCCCHHHHHHHHHHHh
Q 030793 145 FVLN----GKH-EL-SGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 145 fvv~----~~~-~i-~G~~~~~~~~~~l~~~~ 170 (171)
+++- +++ .| .|..+.++|.+.|..+.
T Consensus 217 l~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 217 LYLVNPKSQKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence 9863 333 33 68999999998887654
No 165
>smart00354 HTH_LACI helix_turn _helix lactose operon repressor.
Probab=35.72 E-value=92 Score=18.49 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=15.9
Q ss_pred HHHHHHHcCCchh--HhhhcCCCCChHHHHH
Q 030793 102 LVECARKVGVEGA--AEFLDDPNSGLNEVHE 130 (171)
Q Consensus 102 L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~ 130 (171)
+.++|+.+|++.. ..++++......+..+
T Consensus 3 ~~~iA~~~gvS~~TVSr~ln~~~~v~~~t~~ 33 (70)
T smart00354 3 IKDVARLAGVSKATVSRVLNGNGRVSEETRE 33 (70)
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCCCCHHHHH
Confidence 4567777788765 3455543233334443
No 166
>PRK09526 lacI lac repressor; Reviewed
Probab=35.07 E-value=56 Score=25.54 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=23.1
Q ss_pred HHHHHHHHcCCchh--HhhhcCCCCChHHHHHHH
Q 030793 101 FLVECARKVGVEGA--AEFLDDPNSGLNEVHEEL 132 (171)
Q Consensus 101 ~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~ 132 (171)
.+.+||+.+|++.. ..+|+......++.++..
T Consensus 7 ti~dIA~~aGVS~~TVSrvLn~~~~vs~~tr~rV 40 (342)
T PRK09526 7 TLYDVARYAGVSYQTVSRVLNQASHVSAKTREKV 40 (342)
T ss_pred cHHHHHHHhCCCHHHHHHHhcCCCCCCHHHHHHH
Confidence 68999999999986 567776444556666544
No 167
>PF06288 DUF1040: Protein of unknown function (DUF1040); InterPro: IPR009383 This family consists of several bacterial YihD proteins of unknown function [].; PDB: 2KO6_A.
Probab=34.96 E-value=46 Score=21.02 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh
Q 030793 79 HNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA 114 (171)
Q Consensus 79 ~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~ 114 (171)
.++.+ |.+.+|....+++=.+.|..++.++|.+..
T Consensus 7 nELLE-LL~p~Wqk~pDLnL~Q~LqkLa~eag~~~~ 41 (86)
T PF06288_consen 7 NELLE-LLQPAWQKEPDLNLMQFLQKLAQEAGFDGP 41 (86)
T ss_dssp HHHHH-HTHHHHHSSTTS-HHHHHHHHHHHTT-SS-
T ss_pred HHHHH-HhhHHHhcCCcccHHHHHHHHHHhcCCCCc
Confidence 34444 566789999999989999999999999875
No 168
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=34.61 E-value=63 Score=27.35 Aligned_cols=35 Identities=3% Similarity=0.128 Sum_probs=24.8
Q ss_pred hhCCCCcccEEEE--CCe---eeec-cCCCHHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGK---HELS-GGQPPEVYLRAFQVA 169 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~---~~i~-G~~~~~~~~~~l~~~ 169 (171)
.+++|.++|||++ +|. .... |..+.+.|...|+.+
T Consensus 422 ~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 422 QELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred HHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 3689999999987 332 2233 567888888877654
No 169
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=34.39 E-value=51 Score=21.91 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=18.2
Q ss_pred hhCCCCcccEEEE--CCee--eeccCCCHH
Q 030793 135 YSANISGVPHFVL--NGKH--ELSGGQPPE 160 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~ 160 (171)
.++|+...|++++ +|+| .|.|-++=+
T Consensus 76 ~r~gv~~~PaLvf~R~g~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 76 ARFGVRRWPALVFFRDGRYLGAIEGIRDWA 105 (107)
T ss_dssp HHHT-TSSSEEEEEETTEEEEEEESSSTHH
T ss_pred HHhCCccCCeEEEEECCEEEEEecCeeccc
Confidence 3689999999988 5776 356766543
No 170
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=34.17 E-value=75 Score=22.56 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=24.3
Q ss_pred CcccEEEECCeeeeccCCCHHHHHHHHHHHhC
Q 030793 140 SGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN 171 (171)
Q Consensus 140 ~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~~~ 171 (171)
.-.|.+.||++ +.|..+.+.+.++++++.+
T Consensus 127 ~~aP~~~in~~--~~~~lt~~~~~~il~~~~~ 156 (156)
T PRK05988 127 ACSPAAMLDGE--VHGRLDPQRLDALLAEARR 156 (156)
T ss_pred CCCCeEEECCE--EeCCCCHHHHHHHHHHhhC
Confidence 45799999997 5677788999999887754
No 171
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=34.04 E-value=83 Score=21.41 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=24.9
Q ss_pred hCCC--CcccEEEEC----Ceee-eccCCCHHHHHHHHHHHh
Q 030793 136 SANI--SGVPHFVLN----GKHE-LSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 136 ~~gv--~gvPtfvv~----~~~~-i~G~~~~~~~~~~l~~~~ 170 (171)
.+|+ .++|++++- ++|. ..|.-+.+.+.+-++...
T Consensus 74 ~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l 115 (130)
T cd02983 74 ALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELS 115 (130)
T ss_pred HcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHH
Confidence 4676 469999873 3787 567778888887776643
No 172
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=33.57 E-value=41 Score=21.08 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=19.4
Q ss_pred CCeeeeccCCCHHHHHHHHHHHh
Q 030793 148 NGKHELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 148 ~~~~~i~G~~~~~~~~~~l~~~~ 170 (171)
+|+..+.|+.+.++..++++.+.
T Consensus 57 sGki~itGaks~~~~~~a~~~i~ 79 (86)
T PF00352_consen 57 SGKIVITGAKSEEEAKKAIEKIL 79 (86)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHH
T ss_pred CCEEEEEecCCHHHHHHHHHHHH
Confidence 58888899999999999887753
No 173
>PRK09492 treR trehalose repressor; Provisional
Probab=32.86 E-value=63 Score=24.88 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCchh--HhhhcCCCCChHHHHHHH
Q 030793 101 FLVECARKVGVEGA--AEFLDDPNSGLNEVHEEL 132 (171)
Q Consensus 101 ~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~ 132 (171)
.+.++|+.+|++.. ..+++......++.++..
T Consensus 6 ti~dIA~~agVS~~TVSrvLn~~~~vs~~tr~rV 39 (315)
T PRK09492 6 TIKDIARLSGVGKSTVSRVLNNESGVSEETRERV 39 (315)
T ss_pred cHHHHHHHhCCCHHHHhHHhCCCCCCCHHHHHHH
Confidence 68899999999986 567766444555665544
No 174
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.69 E-value=92 Score=22.82 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=20.5
Q ss_pred CCcccEEEECCeeeeccCCCHHHHHHHHH
Q 030793 139 ISGVPHFVLNGKHELSGGQPPEVYLRAFQ 167 (171)
Q Consensus 139 v~gvPtfvv~~~~~i~G~~~~~~~~~~l~ 167 (171)
..++|.+++.+|.-+.|+.+..++.+.+.
T Consensus 116 l~~~~llv~aNKqD~~~als~~ei~~~L~ 144 (181)
T KOG0070|consen 116 LRNAPLLVFANKQDLPGALSAAEITNKLG 144 (181)
T ss_pred cCCceEEEEechhhccccCCHHHHHhHhh
Confidence 66788888877766777777777666553
No 175
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=32.23 E-value=69 Score=25.01 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHH
Q 030793 100 EFLVECARKVGVEGA--AEFLDDPNSGLNEVHEEL 132 (171)
Q Consensus 100 ~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~ 132 (171)
-++.+||+.+|++.. ..+|+......++.++..
T Consensus 7 ~Ti~dIA~~agVS~~TVSr~Ln~~~~vs~~tr~~V 41 (342)
T PRK10014 7 ITIHDVALAAGVSVSTVSLVLSGKGRISTATGERV 41 (342)
T ss_pred CcHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHH
Confidence 468999999999986 567766444566666544
No 176
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=32.21 E-value=98 Score=22.62 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=25.3
Q ss_pred hCCC--CcccEEEE-C--Cee---eeccCCCHHHHHHHHHHHh
Q 030793 136 SANI--SGVPHFVL-N--GKH---ELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 136 ~~gv--~gvPtfvv-~--~~~---~i~G~~~~~~~~~~l~~~~ 170 (171)
.+|+ .++|+-++ | |+. ...|..+.+++.+.|+.+.
T Consensus 129 ~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll 171 (181)
T PRK13728 129 FFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTVL 171 (181)
T ss_pred HhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHHH
Confidence 5674 79997654 3 542 3579999999998888764
No 177
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=31.92 E-value=66 Score=25.07 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHH
Q 030793 101 FLVECARKVGVEGA--AEFLDDPNSGLNEVHEELK 133 (171)
Q Consensus 101 ~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~ 133 (171)
.+.+||+.+|++.. ..+++......++.++...
T Consensus 7 ti~dIA~~agVS~~TVSrvLn~~~~vs~~tr~rV~ 41 (331)
T PRK14987 7 VLQDVADRVGVTKMTVSRFLRNPEQVSVALRGKIA 41 (331)
T ss_pred cHHHHHHHhCCCHHHhhhhhCCCCCCCHHHHHHHH
Confidence 68899999999986 5677664445666665443
No 178
>PTZ00056 glutathione peroxidase; Provisional
Probab=31.75 E-value=2.1e+02 Score=20.97 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHcCCchh---HhhhcCCCCChHHHHHHHHH---hhCCCC----ccc----EEEEC--Cee--eeccCCC
Q 030793 97 GDKEFLVECARKVGVEGA---AEFLDDPNSGLNEVHEELKK---YSANIS----GVP----HFVLN--GKH--ELSGGQP 158 (171)
Q Consensus 97 ~~~~~L~~ia~~~Gld~~---~~~~~~~~~~~~~v~~~~~~---~~~gv~----gvP----tfvv~--~~~--~i~G~~~ 158 (171)
.+.+.+.+++++.|++-. ...++..+ . ..+...+.. ...++. ++| ||+|+ |+. ...|..+
T Consensus 89 d~~e~~~~f~~~~~~~fpvl~d~~v~g~~-~-~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~ 166 (199)
T PTZ00056 89 PNTKDIRKFNDKNKIKYNFFEPIEVNGEN-T-HELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTE 166 (199)
T ss_pred CCHHHHHHHHHHcCCCceeeeeeeccCCc-c-CHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCC
Confidence 356789999999888643 11122211 1 122221111 122222 333 88996 542 2357778
Q ss_pred HHHHHHHHHHHh
Q 030793 159 PEVYLRAFQVAA 170 (171)
Q Consensus 159 ~~~~~~~l~~~~ 170 (171)
.+.+.+.|+++.
T Consensus 167 ~~~l~~~I~~ll 178 (199)
T PTZ00056 167 PLELEKKIAELL 178 (199)
T ss_pred HHHHHHHHHHHH
Confidence 888888887764
No 179
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=31.29 E-value=63 Score=25.25 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHH
Q 030793 101 FLVECARKVGVEGA--AEFLDDPNSGLNEVHEELK 133 (171)
Q Consensus 101 ~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~ 133 (171)
++.+||+.+|++.. ..+|+......++.++...
T Consensus 3 Ti~dIA~~agVS~~TVSrvLn~~~~vs~~tr~~V~ 37 (341)
T PRK10703 3 TIKDVAKRAGVSTTTVSHVINKTRFVAEETRNAVW 37 (341)
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHH
Confidence 47789999999886 4667653345555555443
No 180
>COG3800 Predicted transcriptional regulator [General function prediction only]
Probab=30.47 E-value=1.4e+02 Score=23.88 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEEC
Q 030793 101 FLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLN 148 (171)
Q Consensus 101 ~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~ 148 (171)
.+.+.|++++-|-+ ...+.- .+ +.+-..+.- ++-|..|||+|++.
T Consensus 141 ~F~~aA~~~ryDie~L~~rFgv--S~-Eq~ahRLsTLQR~g~~GVPfff~r 188 (332)
T COG3800 141 QFLAAAERLRYDIELLRSRFGV--SF-EQAAHRLSTLQRPGQRGVPFFFVR 188 (332)
T ss_pred HHHHHHHHhCccHHHHHHHhCc--cH-HHHHHHHHHhcCCCCCCCCEEEEE
Confidence 34455566666654 122211 11 233333333 67899999999983
No 181
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=30.25 E-value=1.5e+02 Score=20.17 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCccccCCCCCCcHHHHHHHHHHHhcC
Q 030793 39 RMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 74 (171)
Q Consensus 39 ~~~~~a~~~g~~~~~~~~~~~s~~a~r~~~~a~~~g 74 (171)
...+|-+..|+++.+..+.........+-.+....|
T Consensus 16 KA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~~g 51 (126)
T TIGR01616 16 RQKAALKASGHDVEVQDILKEPWHADTLRPYFGNKP 51 (126)
T ss_pred HHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHHcC
Confidence 344556667888888765433333334444444434
No 182
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=30.11 E-value=1.1e+02 Score=21.37 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEE-EC--Ceeeecc-----------CCCHHHHH
Q 030793 98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFV-LN--GKHELSG-----------GQPPEVYL 163 (171)
Q Consensus 98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfv-v~--~~~~i~G-----------~~~~~~~~ 163 (171)
+.+.+.+.+++.|++.. .+.+++ ..+ ...+|+.++|+++ |+ |+....| ..+.+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~--~l~D~~---~~~-----~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~ 145 (171)
T cd02969 76 SPENMKAKAKEHGYPFP--YLLDET---QEV-----AKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLR 145 (171)
T ss_pred CHHHHHHHHHHCCCCce--EEECCc---hHH-----HHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHH
Confidence 56788888888888743 333321 111 1358889999665 54 4432222 12457788
Q ss_pred HHHHHHh
Q 030793 164 RAFQVAA 170 (171)
Q Consensus 164 ~~l~~~~ 170 (171)
++|+++.
T Consensus 146 ~~i~~~l 152 (171)
T cd02969 146 AALDALL 152 (171)
T ss_pred HHHHHHH
Confidence 8888765
No 183
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=29.48 E-value=70 Score=27.31 Aligned_cols=34 Identities=15% Similarity=0.406 Sum_probs=25.3
Q ss_pred hhCCCCcccEEEE--CCe--eeeccCCCHHHHHHHHHH
Q 030793 135 YSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQV 168 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~--~~i~G~~~~~~~~~~l~~ 168 (171)
.+++|.|.||+-+ ||+ ....|....+.+..-|.+
T Consensus 93 ~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~k 130 (493)
T KOG0190|consen 93 SKYEVRGYPTLKIFRNGRSAQDYNGPREADGIVKWLKK 130 (493)
T ss_pred hhhcCCCCCeEEEEecCCcceeccCcccHHHHHHHHHh
Confidence 4799999999855 665 456788888777766654
No 184
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=29.37 E-value=35 Score=18.11 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=12.4
Q ss_pred hhCCCCcccEEEECC
Q 030793 135 YSANISGVPHFVLNG 149 (171)
Q Consensus 135 ~~~gv~gvPtfvv~~ 149 (171)
...++.++|++++.+
T Consensus 47 ~~~~~~~~P~~~~~~ 61 (69)
T cd01659 47 KRYGVGGVPTLVVFG 61 (69)
T ss_pred HhCCCccccEEEEEe
Confidence 368889999999865
No 185
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=29.37 E-value=86 Score=24.62 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCchh--HhhhcCCCCChHHHHHHH
Q 030793 101 FLVECARKVGVEGA--AEFLDDPNSGLNEVHEEL 132 (171)
Q Consensus 101 ~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~ 132 (171)
.+.+||+.+|++.. ..+|+.....+++.++..
T Consensus 3 ti~dIA~~aGVS~~TVSrvLn~~~~Vs~~tr~kV 36 (346)
T PRK10401 3 TIRDVARQAGVSVATVSRVLNNSALVSADTREAV 36 (346)
T ss_pred CHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHH
Confidence 47899999999986 567776444556666644
No 186
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=29.22 E-value=65 Score=24.92 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=20.5
Q ss_pred HHHHHHHcCCchh--HhhhcCCCCChHHHHHHH
Q 030793 102 LVECARKVGVEGA--AEFLDDPNSGLNEVHEEL 132 (171)
Q Consensus 102 L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~ 132 (171)
+.+||+.+|++.. ..+|+......++.++..
T Consensus 1 i~dIA~~agVS~~TVSrvLn~~~~vs~~tr~rV 33 (327)
T PRK10423 1 MKDVARLAGVSTSTVSHVINKDRFVSEAITAKV 33 (327)
T ss_pred ChhHHHHhCCcHHHHHHHhCCCCCCCHHHHHHH
Confidence 3578889999876 466765434556666544
No 187
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=28.98 E-value=22 Score=14.25 Aligned_cols=6 Identities=50% Similarity=0.983 Sum_probs=4.4
Q ss_pred CcccEE
Q 030793 140 SGVPHF 145 (171)
Q Consensus 140 ~gvPtf 145 (171)
.|+||+
T Consensus 2 ~gTPTM 7 (13)
T PF10555_consen 2 SGTPTM 7 (13)
T ss_pred CCCccc
Confidence 478886
No 188
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=28.84 E-value=1.5e+02 Score=18.58 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh
Q 030793 78 QHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA 114 (171)
Q Consensus 78 ~~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~ 114 (171)
+.++...+.++.-..|...+..+.+..+++..|++.+
T Consensus 2 ~~~~~~piL~~L~~~g~~~~~~ei~~~v~~~~~ls~e 38 (92)
T PF14338_consen 2 YDELMPPILEALKDLGGSASRKEIYERVAERFGLSDE 38 (92)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhCCCHH
Confidence 3566667777765558888889999999999999876
No 189
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=28.25 E-value=87 Score=24.20 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCchh--HhhhcCCCCChHHHHHHH
Q 030793 101 FLVECARKVGVEGA--AEFLDDPNSGLNEVHEEL 132 (171)
Q Consensus 101 ~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~ 132 (171)
.+.+||+.+|++.. ..+++......++.++..
T Consensus 3 ti~dIA~~agVS~sTVSr~Ln~~~~vs~~tr~rV 36 (311)
T TIGR02405 3 TIKDIARLAGVGKSTVSRVLNNEPKVSIETRERV 36 (311)
T ss_pred cHHHHHHHhCCCHHHHHHHhCCCCCCCHHHHHHH
Confidence 47899999999986 567765433445555543
No 190
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=27.81 E-value=1.8e+02 Score=19.07 Aligned_cols=34 Identities=9% Similarity=0.097 Sum_probs=18.7
Q ss_pred HHHHHHhcCCccccCCCCCCcHHHHHHHHHHHhc
Q 030793 40 MTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQ 73 (171)
Q Consensus 40 ~~~~a~~~g~~~~~~~~~~~s~~a~r~~~~a~~~ 73 (171)
..++-+..|+++.+..+..+......+..+.+..
T Consensus 16 a~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 16 AKQWLEEHQIPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred HHHHHHHCCCceEEEecCCCcchHHHHHHHHHHh
Confidence 4455556788887766544433344444455444
No 191
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=27.81 E-value=40 Score=21.79 Aligned_cols=29 Identities=7% Similarity=0.225 Sum_probs=18.0
Q ss_pred hCCCCcccEEEE-C-C-e--eeeccC-CCHHHHHH
Q 030793 136 SANISGVPHFVL-N-G-K--HELSGG-QPPEVYLR 164 (171)
Q Consensus 136 ~~gv~gvPtfvv-~-~-~--~~i~G~-~~~~~~~~ 164 (171)
..|+.++||+++ . | + +...|. .+.+.|..
T Consensus 73 ~~~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 73 ELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLM 107 (109)
T ss_pred hcCCCcCCEEEEEcCCCCCceeccCCCCCHHHHHh
Confidence 489999999985 2 2 1 234563 56665543
No 192
>PF04487 CITED: CITED; InterPro: IPR007576 CITED, CBP/p300-interacting transactivator with ED-rich tail, is characterised by a conserved 32-amino acid sequence at the C terminus. CITED protein does not bind DNA directly and is thought to function as a transcriptional co-activator [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1R8U_A 1P4Q_A.
Probab=27.71 E-value=30 Score=26.02 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=16.5
Q ss_pred CCCCCHHHHHHHHHHcCCchh
Q 030793 94 KYIGDKEFLVECARKVGVEGA 114 (171)
Q Consensus 94 ~~i~~~~~L~~ia~~~Gld~~ 114 (171)
.|.-|+|+|..++.++|||+.
T Consensus 164 ~d~iDEevL~sLv~ElGLdr~ 184 (214)
T PF04487_consen 164 TDLIDEEVLMSLVVELGLDRV 184 (214)
T ss_dssp -SSS-CCHHHHHHHHHTCCC-
T ss_pred ccccCHHHHHHHHHHHCcHHH
Confidence 456789999999999999985
No 193
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=27.51 E-value=2e+02 Score=21.76 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH---hhCCCCcccEEEECCe
Q 030793 97 GDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK---YSANISGVPHFVLNGK 150 (171)
Q Consensus 97 ~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~---~~~gv~gvPtfvv~~~ 150 (171)
.+-....++++..|++.. .++.++ +...+.+...... ..-++.-||++.|||+
T Consensus 132 ~~~~~~~~C~~~~~~~~~~i~~Ca~s-~~g~~L~~~~~~~T~~~~p~~~~VPwi~vNg~ 189 (220)
T KOG3160|consen 132 QKLSEAEDCLEKYGLNEKKIRECANS-RLGAKLLLKYAQETAALAPPHPWVPWILVNGQ 189 (220)
T ss_pred cchhHHHHHHhhcCCCHHHHHHHhcC-chHHHHHHHHHHhhcccCCCCCCcCeEEECCc
Confidence 344556669999999654 678887 3343333322222 3578899999999997
No 194
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=27.40 E-value=1e+02 Score=16.82 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=16.7
Q ss_pred hhcCCCCCCHHHHHHHHHHcCCc
Q 030793 90 FTQGKYIGDKEFLVECARKVGVE 112 (171)
Q Consensus 90 ~~~g~~i~~~~~L~~ia~~~Gld 112 (171)
|+.|....+.+.+..++..+|++
T Consensus 35 ~e~g~~~~~~~~~~~i~~~lgv~ 57 (58)
T TIGR03070 35 VENGKPTVRLDKVLRVLDALGLE 57 (58)
T ss_pred HHCCCCCCCHHHHHHHHHHcCCC
Confidence 44555445788888899888875
No 195
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=27.30 E-value=1.1e+02 Score=21.34 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEE
Q 030793 98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL 147 (171)
Q Consensus 98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv 147 (171)
+.+.+.++.++.|++.-.-.+.+ .... .....+|+.|+||.++
T Consensus 76 ~~~~~~~f~~~~~~~~~~~p~~~------~~~~-~l~~~y~v~~iPt~vl 118 (146)
T cd03008 76 SEQQQESFLKDMPKKWLFLPFED------EFRR-ELEAQFSVEELPTVVV 118 (146)
T ss_pred CHHHHHHHHHHCCCCceeecccc------hHHH-HHHHHcCCCCCCEEEE
Confidence 34557778888887531000111 1111 1124689999999876
No 196
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=27.25 E-value=2.1e+02 Score=19.72 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=33.8
Q ss_pred HHHHHHHHHHH----hhcCCCCCCHHHHHHHHHHcCCchh-HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCe
Q 030793 79 HNLAEELFLGY----FTQGKYIGDKEFLVECARKVGVEGA-AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGK 150 (171)
Q Consensus 79 ~~~~~~l~~a~----~~~g~~i~~~~~L~~ia~~~Gld~~-~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~ 150 (171)
..+...+++.. ..-|.+. +++.+.+.|.+.+.|.- ...+.. .....+++-.+. .+.|+.+.| ++++|.
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~v-~~e~~v~aa~~~~adiVglS~l~~--~~~~~~~~~~~~l~~~gl~~~~-vivGG~ 91 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVLS-PQEEFIKAAIETKADAILVSSLYG--HGEIDCKGLRQKCDEAGLEGIL-LYVGGN 91 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCCC-CHHHHHHHHHHcCCCEEEEecccc--cCHHHHHHHHHHHHHCCCCCCE-EEecCC
Confidence 34444555542 1124444 35566667777666643 122222 122334443333 567877765 677763
No 197
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=26.94 E-value=1.7e+02 Score=19.39 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=11.3
Q ss_pred HHHHHHhcCCccccCCC
Q 030793 40 MTEVFRGLGLEYNMSGL 56 (171)
Q Consensus 40 ~~~~a~~~g~~~~~~~~ 56 (171)
..+|-+..|++|.+..+
T Consensus 16 A~~~L~~~gi~~~~~d~ 32 (113)
T cd03033 16 QKALLEAAGHEVEVRDL 32 (113)
T ss_pred HHHHHHHcCCCcEEeeh
Confidence 34556667888877665
No 198
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=26.43 E-value=43 Score=24.12 Aligned_cols=16 Identities=13% Similarity=0.420 Sum_probs=13.2
Q ss_pred hhCCCCcccEEEE--CCe
Q 030793 135 YSANISGVPHFVL--NGK 150 (171)
Q Consensus 135 ~~~gv~gvPtfvv--~~~ 150 (171)
.+++|.++|||++ +|+
T Consensus 129 ~~f~v~~vPTlllyk~G~ 146 (175)
T cd02987 129 DEFDTDALPALLVYKGGE 146 (175)
T ss_pred HhCCCCCCCEEEEEECCE
Confidence 4699999999987 565
No 199
>PF11869 DUF3389: Protein of unknown function (DUF3389); InterPro: IPR021811 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=26.36 E-value=69 Score=19.81 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.7
Q ss_pred CCCCCHHHHHHHHHHcCCch
Q 030793 94 KYIGDKEFLVECARKVGVEG 113 (171)
Q Consensus 94 ~~i~~~~~L~~ia~~~Gld~ 113 (171)
..+.+++.|..+++..|++-
T Consensus 55 ikLD~eeQL~~ia~~lGi~i 74 (75)
T PF11869_consen 55 IKLDNEEQLQAIAEELGIDI 74 (75)
T ss_pred EEcCCHHHHHHHHHHhCccc
Confidence 45678999999999999873
No 200
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=26.34 E-value=2.5e+02 Score=23.35 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=31.9
Q ss_pred hhcCCCCC-hHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793 117 FLDDPNSG-LNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 117 ~~~~~~~~-~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~ 169 (171)
.++.++.. .++++.+...+..-..|.|+|+++- ....=+..|+.+..+|..+
T Consensus 261 mvEGPGHvpl~~I~~nv~l~k~~c~~aPfYvLGP-LvTDIApGYDHItsAIGaA 313 (432)
T COG0422 261 MVEGPGHVPLNEIEANVKLQKELCDGAPFYVLGP-LVTDIAPGYDHITSAIGAA 313 (432)
T ss_pred EEECCCcCcHHHHHHHHHHHHHhcCCCCeeeeCC-cccccCCCchHHHHHHHHH
Confidence 44555322 3456666665555678999999953 2223355677777777654
No 201
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=26.26 E-value=63 Score=22.06 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=12.9
Q ss_pred hCCCCcccEEEEC---Ceee-eccCCCHHHHHHHHH
Q 030793 136 SANISGVPHFVLN---GKHE-LSGGQPPEVYLRAFQ 167 (171)
Q Consensus 136 ~~gv~gvPtfvv~---~~~~-i~G~~~~~~~~~~l~ 167 (171)
..|...+|+||+- |+.. ..|.. +....+.+.
T Consensus 92 t~g~~~IP~~I~~d~~~~~lg~wger-P~~~~~~~~ 126 (129)
T PF14595_consen 92 TNGGRSIPTFIFLDKDGKELGRWGER-PKEVQELVD 126 (129)
T ss_dssp T-SS--SSEEEEE-TT--EEEEEESS--HHHH----
T ss_pred hCCCeecCEEEEEcCCCCEeEEEcCC-CHHHhhccc
Confidence 4899999999984 2322 24443 445555444
No 202
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=26.21 E-value=95 Score=24.72 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCchh--HhhhcCCCCChHHHHHHH
Q 030793 101 FLVECARKVGVEGA--AEFLDDPNSGLNEVHEEL 132 (171)
Q Consensus 101 ~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~ 132 (171)
.+.++|+.+|++.. ..+++.....+++.++..
T Consensus 2 TikDVA~~AGVS~sTVSrvln~~~~Vs~eTr~kV 35 (333)
T COG1609 2 TIKDVAKLAGVSKATVSRVLNGSPYVSEETREKV 35 (333)
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHH
Confidence 47889999999986 467776544566665543
No 203
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=25.83 E-value=1.2e+02 Score=16.53 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=22.6
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh
Q 030793 83 EELFLGYFTQGKYIGDKEFLVECARKVGVEGA 114 (171)
Q Consensus 83 ~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~ 114 (171)
..+++..|..+..+ +.+.+..++..+|++..
T Consensus 12 ~~~L~~~f~~~~~P-~~~~~~~la~~~~l~~~ 42 (56)
T smart00389 12 LEELEKEFQKNPYP-SREEREELAAKLGLSER 42 (56)
T ss_pred HHHHHHHHHhCCCC-CHHHHHHHHHHHCcCHH
Confidence 34455556666654 78889999999999865
No 204
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=25.63 E-value=62 Score=22.54 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=20.8
Q ss_pred cccEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793 141 GVPHFVLNGKHELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 141 gvPtfvv~~~~~i~G~~~~~~~~~~l~~~ 169 (171)
-.|.+.|||+ +.+..+.+.+.++|+++
T Consensus 118 ~aP~v~V~~~--~y~~vt~e~v~~il~~l 144 (145)
T PF01257_consen 118 QAPVVMVDGE--WYGNVTPEKVDEILEEL 144 (145)
T ss_dssp GSSEEEECCC--EEESSSCCHHHHHHHHH
T ss_pred CCCEEEECCE--EECCCCHHHHHHHHHhc
Confidence 3799999987 55667778888888765
No 205
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=25.24 E-value=50 Score=21.97 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=11.1
Q ss_pred hhCCCCcccEEEE
Q 030793 135 YSANISGVPHFVL 147 (171)
Q Consensus 135 ~~~gv~gvPtfvv 147 (171)
..+||.++|++++
T Consensus 93 ~~~~v~~~P~~~l 105 (131)
T cd03009 93 RTFKIEGIPTLII 105 (131)
T ss_pred HHcCCCCCCEEEE
Confidence 4689999999876
No 206
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=24.92 E-value=1.2e+02 Score=23.59 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=20.8
Q ss_pred HHHHHHHcCCchh--HhhhcCCC---CChHHHHHHH
Q 030793 102 LVECARKVGVEGA--AEFLDDPN---SGLNEVHEEL 132 (171)
Q Consensus 102 L~~ia~~~Gld~~--~~~~~~~~---~~~~~v~~~~ 132 (171)
+.+||+.+|++.. ..+|+... ...++.++..
T Consensus 2 i~dIA~~aGVS~~TVSrvLn~~~~~~~vs~~tr~rV 37 (327)
T TIGR02417 2 LSDIAKLAGVSKTTASYVINGKAKEYRISQETVERV 37 (327)
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCCCCccCHHHHHHH
Confidence 6789999999886 56776632 2555655543
No 207
>PLN00062 TATA-box-binding protein; Provisional
Probab=24.78 E-value=1.1e+02 Score=22.22 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.1
Q ss_pred CCeeeeccCCCHHHHHHHHHHH
Q 030793 148 NGKHELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 148 ~~~~~i~G~~~~~~~~~~l~~~ 169 (171)
+|+..+.|+.+.+++.++++.+
T Consensus 146 sGkvvitGaks~~~~~~ai~~i 167 (179)
T PLN00062 146 SGKIVITGAKVREEIYTAFENI 167 (179)
T ss_pred CCEEEEEecCCHHHHHHHHHHH
Confidence 5888889999999999988765
No 208
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=24.50 E-value=1.5e+02 Score=17.29 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHcCCchh
Q 030793 97 GDKEFLVECARKVGVEGA 114 (171)
Q Consensus 97 ~~~~~L~~ia~~~Gld~~ 114 (171)
.|.+...++|.++||+..
T Consensus 30 ~~~~~r~~la~~lgl~~~ 47 (58)
T TIGR01565 30 KRREEVREFCEEIGVTRK 47 (58)
T ss_pred CCHHHHHHHHHHhCCCHH
Confidence 356688899999999975
No 209
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=24.41 E-value=1.1e+02 Score=16.70 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=16.5
Q ss_pred hcCCCCCCHHHHHHHHHHcCCchh
Q 030793 91 TQGKYIGDKEFLVECARKVGVEGA 114 (171)
Q Consensus 91 ~~g~~i~~~~~L~~ia~~~Gld~~ 114 (171)
..|....+.+.+..++..+|++.+
T Consensus 30 ~~g~~~~~~~~~~~ia~~l~~~~~ 53 (55)
T PF01381_consen 30 ENGKRNPSLDTLKKIAKALGVSPE 53 (55)
T ss_dssp HTTSSTSBHHHHHHHHHHHTSEHH
T ss_pred hcCCCCCCHHHHHHHHHHHCCCHH
Confidence 345555577788888888887753
No 210
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=24.33 E-value=1.1e+02 Score=23.64 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=21.4
Q ss_pred HHHHHHHHcCCchh--HhhhcCCC---CChHHHHHHH
Q 030793 101 FLVECARKVGVEGA--AEFLDDPN---SGLNEVHEEL 132 (171)
Q Consensus 101 ~L~~ia~~~Gld~~--~~~~~~~~---~~~~~v~~~~ 132 (171)
.+.+||+.+|++.. ..+++... ...++.++..
T Consensus 2 ti~dIA~~aGVS~~TVSrvLn~~~~~~~Vs~~tr~rV 38 (328)
T PRK11303 2 KLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKV 38 (328)
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCCcCHHHHHHH
Confidence 47889999999886 56776632 2555665543
No 211
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=24.11 E-value=2.5e+02 Score=23.49 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=30.2
Q ss_pred hhcCCCCC-hHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793 117 FLDDPNSG-LNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 117 ~~~~~~~~-~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~ 169 (171)
.++.|+.. .++++.+.+.++.=..|.|+|+++- ....=+..|+.+..+|..+
T Consensus 260 MVEGPGHvPl~~I~~nv~lqK~lc~~APfYvLGP-LvTDiApGYDHItsAIGgA 312 (423)
T TIGR00190 260 MVEGPGHVPLDQIEANVRLQKELCDEAPFYVLGP-LVTDIAPGYDHITSAIGAA 312 (423)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhhCCCCeeecCC-cccccCCCchHHHHHHHHH
Confidence 34454322 3456666555444467899999953 2223345677777777654
No 212
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=24.07 E-value=50 Score=23.30 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=9.6
Q ss_pred CCCCcccEEEE--CCe
Q 030793 137 ANISGVPHFVL--NGK 150 (171)
Q Consensus 137 ~gv~gvPtfvv--~~~ 150 (171)
.|+.|+|||++ +|+
T Consensus 104 ~~v~~~PT~ilf~~Gk 119 (152)
T cd02962 104 PLSKQLPTIILFQGGK 119 (152)
T ss_pred CCcCCCCEEEEEECCE
Confidence 45556999987 454
No 213
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=24.04 E-value=71 Score=17.70 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=12.0
Q ss_pred CCCcccEEEECCeeee
Q 030793 138 NISGVPHFVLNGKHEL 153 (171)
Q Consensus 138 gv~gvPtfvv~~~~~i 153 (171)
--.|++..+|||+..+
T Consensus 16 ~~~GI~~V~VNG~~vv 31 (48)
T PF07908_consen 16 PAEGIDYVFVNGQIVV 31 (48)
T ss_dssp --BSEEEEEETTEEEE
T ss_pred cCCCEEEEEECCEEEE
Confidence 3479999999998655
No 214
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=23.97 E-value=3.1e+02 Score=20.48 Aligned_cols=11 Identities=45% Similarity=0.909 Sum_probs=5.7
Q ss_pred CcccEEEECCe
Q 030793 140 SGVPHFVLNGK 150 (171)
Q Consensus 140 ~gvPtfvv~~~ 150 (171)
.|+||++++.+
T Consensus 49 ~gIpt~~~~~k 59 (200)
T COG0299 49 AGIPTVVLDRK 59 (200)
T ss_pred cCCCEEEeccc
Confidence 34566655543
No 215
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=23.82 E-value=1.4e+02 Score=17.57 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=12.4
Q ss_pred HHHHHHHHcCCchh
Q 030793 101 FLVECARKVGVEGA 114 (171)
Q Consensus 101 ~L~~ia~~~Gld~~ 114 (171)
.|.+||+.+|++..
T Consensus 24 ~lkdIA~~Lgvs~~ 37 (60)
T PF10668_consen 24 KLKDIAEKLGVSES 37 (60)
T ss_pred cHHHHHHHHCCCHH
Confidence 58899999999976
No 216
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=23.82 E-value=1.1e+02 Score=20.96 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=18.6
Q ss_pred CcccEEEEC---Cee--eecc----------CCCHHHHHHHHHHHh
Q 030793 140 SGVPHFVLN---GKH--ELSG----------GQPPEVYLRAFQVAA 170 (171)
Q Consensus 140 ~gvPtfvv~---~~~--~i~G----------~~~~~~~~~~l~~~~ 170 (171)
.|+||++|= |+. .+.| ..+.+.+.+.+++|.
T Consensus 78 ~~vPtivFld~~g~vi~~i~Gy~~~~~~~y~~~~~~~~~~~m~~a~ 123 (130)
T cd02960 78 QYVPRIMFVDPSLTVRADITGRYSNRLYTYEPADIPLLIENMKKAL 123 (130)
T ss_pred cccCeEEEECCCCCCcccccccccCccceeCcCcHHHHHHHHHHHH
Confidence 689999872 321 2233 335567777777664
No 217
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=23.74 E-value=62 Score=21.97 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHHHcCCchh
Q 030793 94 KYIGDKEFLVECARKVGVEGA 114 (171)
Q Consensus 94 ~~i~~~~~L~~ia~~~Gld~~ 114 (171)
.++++++.+.++|.++||.-.
T Consensus 91 ~dLss~eRIldiAkk~gLkl~ 111 (120)
T COG4839 91 KDLSSPERILDIAKKAGLKLN 111 (120)
T ss_pred HHhccHHHHHHHHHHccccCC
Confidence 467899999999999999743
No 218
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=23.66 E-value=1.1e+02 Score=17.46 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=17.7
Q ss_pred hhcCCCCCCHHHHHHHHHHcCCchh
Q 030793 90 FTQGKYIGDKEFLVECARKVGVEGA 114 (171)
Q Consensus 90 ~~~g~~i~~~~~L~~ia~~~Gld~~ 114 (171)
|+.|....+...+..+|...|++.+
T Consensus 32 ~e~g~~~~~~~~l~~i~~~~~v~~~ 56 (64)
T PF12844_consen 32 IENGKRKPSVSTLKKIAEALGVSLD 56 (64)
T ss_dssp HHTTSS--BHHHHHHHHHHHTS-HH
T ss_pred HHCCCcCCCHHHHHHHHHHhCCCHH
Confidence 5566655678889999999999876
No 219
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=23.61 E-value=1.5e+02 Score=21.40 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=23.3
Q ss_pred CcccEEEECCeeeeccCCCHHHHHHHHHHHh
Q 030793 140 SGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 140 ~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~~ 170 (171)
.-.|.+.|||+ +.|..+.+.+.++|++..
T Consensus 140 ~~AP~~~Vn~~--~~~~lt~e~v~~il~~~~ 168 (169)
T PRK07571 140 GIAPAVVFDGK--VAGKQTPESVLEKVQGWL 168 (169)
T ss_pred CCCCeEEECCE--EeCCCCHHHHHHHHHHHh
Confidence 44799999997 567788899999888753
No 220
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=23.52 E-value=1.2e+02 Score=21.97 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.2
Q ss_pred CCeeeeccCCCHHHHHHHHHHH
Q 030793 148 NGKHELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 148 ~~~~~i~G~~~~~~~~~~l~~~ 169 (171)
.|+..+.|+.+.++..++++.+
T Consensus 146 sGkvvitGaks~~~~~~a~~~i 167 (174)
T cd04516 146 SGKIVLTGAKSREEIYQAFENI 167 (174)
T ss_pred CCEEEEEecCCHHHHHHHHHHH
Confidence 5888889999999999998765
No 221
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=23.37 E-value=1.2e+02 Score=17.30 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=19.9
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh
Q 030793 82 AEELFLGYFTQGKYIGDKEFLVECARKVGVEGA 114 (171)
Q Consensus 82 ~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~ 114 (171)
..|+-..||..-+.+ .+.++|+.+|++..
T Consensus 10 ~~A~~~GYfd~PR~~----tl~elA~~lgis~s 38 (53)
T PF04967_consen 10 KAAYELGYFDVPRRI----TLEELAEELGISKS 38 (53)
T ss_pred HHHHHcCCCCCCCcC----CHHHHHHHhCCCHH
Confidence 334444566665555 58889999999865
No 222
>PRK00394 transcription factor; Reviewed
Probab=23.30 E-value=1.1e+02 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=19.4
Q ss_pred CCeeeeccCCCHHHHHHHHHHHh
Q 030793 148 NGKHELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 148 ~~~~~i~G~~~~~~~~~~l~~~~ 170 (171)
.|+..+.|+.+.++..++++.+.
T Consensus 147 SGKvvitGaks~~~~~~a~~~i~ 169 (179)
T PRK00394 147 SGKLVITGAKSEEDAEKAVEKIL 169 (179)
T ss_pred CCEEEEEecCCHHHHHHHHHHHH
Confidence 58888899999999998887653
No 223
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=23.22 E-value=1.1e+02 Score=14.75 Aligned_cols=28 Identities=29% Similarity=0.233 Sum_probs=17.2
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHH-HcC
Q 030793 83 EELFLGYFTQGKYIGDKEFLVECAR-KVG 110 (171)
Q Consensus 83 ~~l~~a~~~~g~~i~~~~~L~~ia~-~~G 110 (171)
..+|+.+=.++...-+.+.|..+.. .+|
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 3466666555555556777877777 455
No 224
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=23.10 E-value=57 Score=21.85 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=10.9
Q ss_pred hhCCCCcccEEEE
Q 030793 135 YSANISGVPHFVL 147 (171)
Q Consensus 135 ~~~gv~gvPtfvv 147 (171)
..+||.|+|++++
T Consensus 93 ~~~~v~~iPt~~l 105 (132)
T cd02964 93 KQFKVEGIPTLVV 105 (132)
T ss_pred HHcCCCCCCEEEE
Confidence 3589999999975
No 225
>PF13728 TraF: F plasmid transfer operon protein
Probab=22.99 E-value=1.3e+02 Score=22.48 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHH----hhcCCCCCC---HHHHHHHHHHcCCchh-----HhhhcCCCCChHHHHHHHHHhhCCCCcccE
Q 030793 77 KQHNLAEELFLGY----FTQGKYIGD---KEFLVECARKVGVEGA-----AEFLDDPNSGLNEVHEELKKYSANISGVPH 144 (171)
Q Consensus 77 ~~~~~~~~l~~a~----~~~g~~i~~---~~~L~~ia~~~Gld~~-----~~~~~~~~~~~~~v~~~~~~~~~gv~gvPt 144 (171)
...+++..+.+.+ |-++.+... ..+|..++.+.|+..- ...+.+ ....+.+.-.+..+||.-||+
T Consensus 110 ~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~---fp~~~~~~g~~~~l~v~~~Pa 186 (215)
T PF13728_consen 110 KRDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPS---FPNPRPDPGQAKRLGVKVTPA 186 (215)
T ss_pred HHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcC---CCCCCCCHHHHHHcCCCcCCE
Confidence 4556666666653 455554322 4578889999999753 111111 111111222234799999999
Q ss_pred EEEC---C-ee-ee-ccCCCHHHHHHHH
Q 030793 145 FVLN---G-KH-EL-SGGQPPEVYLRAF 166 (171)
Q Consensus 145 fvv~---~-~~-~i-~G~~~~~~~~~~l 166 (171)
+++- + ++ .| .|..+.++|.+.|
T Consensus 187 l~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 187 LFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 9873 2 33 33 6888998887754
No 226
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=22.83 E-value=1.2e+02 Score=26.84 Aligned_cols=44 Identities=25% Similarity=0.436 Sum_probs=33.6
Q ss_pred HHHHHHH-HH-hhCCCCcccEEEE-C------CeeeeccCCCHHHHHHHHHHH
Q 030793 126 NEVHEEL-KK-YSANISGVPHFVL-N------GKHELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 126 ~~v~~~~-~~-~~~gv~gvPtfvv-~------~~~~i~G~~~~~~~~~~l~~~ 169 (171)
.+...+. +. .+.|+..+.|+|+ | |+|.++|..+...|++++++.
T Consensus 48 pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl~~~~ 100 (649)
T KOG0496|consen 48 PEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKLIHKA 100 (649)
T ss_pred hhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHHHHHC
Confidence 3444443 33 6899999999998 2 678889999999999988764
No 227
>PLN02309 5'-adenylylsulfate reductase
Probab=22.80 E-value=1.3e+02 Score=25.52 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=23.7
Q ss_pred hCCCCcccEEEEC--Ce---eeec-cCCCHHHHHHHHHHH
Q 030793 136 SANISGVPHFVLN--GK---HELS-GGQPPEVYLRAFQVA 169 (171)
Q Consensus 136 ~~gv~gvPtfvv~--~~---~~i~-G~~~~~~~~~~l~~~ 169 (171)
+++|.++|||++= |. .... |..+.+.|..-|++.
T Consensus 417 ~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 417 ELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred hCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 5899999999872 22 1233 467888888877654
No 228
>COG2922 Smg Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.77 E-value=2.3e+02 Score=19.98 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhcCCCC-CCHHHHHHHHHHcCCchh
Q 030793 80 NLAEELFLGYFTQGKYI-GDKEFLVECARKVGVEGA 114 (171)
Q Consensus 80 ~~~~~l~~a~~~~g~~i-~~~~~L~~ia~~~Gld~~ 114 (171)
++.--||+.|+....++ -|.+.|..-..++|++..
T Consensus 3 dvl~YLfE~y~h~ea~l~vd~d~L~~~L~~aGF~~~ 38 (157)
T COG2922 3 DVLMYLFETYIHNEAELPVDQDSLENDLEDAGFDRE 38 (157)
T ss_pred HHHHHHHHHHhccCCCCCcCHHHHHhHHHHcCCCHH
Confidence 34556889988776665 489999999999999975
No 229
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=22.76 E-value=1.1e+02 Score=22.11 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=19.5
Q ss_pred CCeeeeccCCCHHHHHHHHHHHh
Q 030793 148 NGKHELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 148 ~~~~~i~G~~~~~~~~~~l~~~~ 170 (171)
.|+..+.|+.+.++..++++.+.
T Consensus 146 SGKvvitGaks~~~~~~a~~~i~ 168 (174)
T cd04518 146 SGKMVITGAKSEEDAKRAVEKLL 168 (174)
T ss_pred CCEEEEEecCCHHHHHHHHHHHH
Confidence 58888899999999999887653
No 230
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=22.68 E-value=2.1e+02 Score=18.72 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=18.1
Q ss_pred HHHHHHhcCCccccCCCCCCcHHHHHHHHHHHhcC
Q 030793 40 MTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 74 (171)
Q Consensus 40 ~~~~a~~~g~~~~~~~~~~~s~~a~r~~~~a~~~g 74 (171)
..+|-+..|++|.+..+.........+..+.+..|
T Consensus 15 A~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~ 49 (112)
T cd03034 15 ALALLEEAGIEPEIVEYLKTPPTAAELRELLAKLG 49 (112)
T ss_pred HHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHcC
Confidence 34566667777777655333333333444444444
No 231
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=22.30 E-value=1.1e+02 Score=22.04 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=19.4
Q ss_pred CCeeeeccCCCHHHHHHHHHHHh
Q 030793 148 NGKHELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 148 ~~~~~i~G~~~~~~~~~~l~~~~ 170 (171)
+|+..+.|+.+.++...+++++.
T Consensus 55 sGKivitGaks~~~~~~a~~~~~ 77 (174)
T cd00652 55 SGKMVITGAKSEEDAKLAARKYA 77 (174)
T ss_pred CCEEEEEecCCHHHHHHHHHHHH
Confidence 68988899999999988887653
No 232
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=21.61 E-value=4.1e+02 Score=22.05 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=20.9
Q ss_pred hhCCCCcccEEEEC---Ceee--eccCCCHHHHHHH
Q 030793 135 YSANISGVPHFVLN---GKHE--LSGGQPPEVYLRA 165 (171)
Q Consensus 135 ~~~gv~gvPtfvv~---~~~~--i~G~~~~~~~~~~ 165 (171)
.++||.--|+.||- |.|- |--..+.+++..+
T Consensus 250 ~eYgI~e~PfViVKADaGTYGMGImtv~~~~ev~~L 285 (403)
T TIGR02049 250 EEYGIHTQPYVIVKADAGTYGMGIMTATSGEEVLGL 285 (403)
T ss_pred HHcCCCCCCeEEEEcCCCCCCceEEEecCHHHHHHh
Confidence 58999999999993 5552 2234566666554
No 233
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=21.53 E-value=73 Score=24.49 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=22.9
Q ss_pred hCCCCc--ccEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793 136 SANISG--VPHFVLNGKHELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 136 ~~gv~g--vPtfvv~~~~~i~G~~~~~~~~~~l~~~ 169 (171)
.+|..| ||-.||||+....|+. ...+..+|...
T Consensus 106 a~g~~~vyTPQavvnGr~~~~Gad-~~~i~~~i~a~ 140 (261)
T COG5429 106 AFGARGVYTPQAVVNGRVHANGAD-PGAIEDAIAAM 140 (261)
T ss_pred hhccCCCCCchheeechhhhcCCC-HHHHHHHHHHh
Confidence 344444 5778999998888875 56666666654
No 234
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=21.50 E-value=1.3e+02 Score=23.46 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCchh--HhhhcCCCC--ChHHHHHHH
Q 030793 101 FLVECARKVGVEGA--AEFLDDPNS--GLNEVHEEL 132 (171)
Q Consensus 101 ~L~~ia~~~Gld~~--~~~~~~~~~--~~~~v~~~~ 132 (171)
.+.+||+.+|++.. ..+++.... ..++.++..
T Consensus 3 ti~dIA~~agVS~~TVSrvln~~~~~~vs~~tr~rV 38 (327)
T PRK10339 3 TLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRI 38 (327)
T ss_pred CHHHHHHHhCCCHHhhhhhhcCCCCCCcCHHHHHHH
Confidence 47899999999986 467765321 456666544
No 235
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=20.85 E-value=2.7e+02 Score=23.35 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=29.6
Q ss_pred hhcCCCCC-hHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793 117 FLDDPNSG-LNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 117 ~~~~~~~~-~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~ 169 (171)
.++.|+.. ..++..+.+.++.=..|.|+|+++- ....=+..|+.+..+|..+
T Consensus 263 MVEGPGHvPl~~I~~nv~l~K~lc~~APfYvLGP-LvTDiApGYDHIt~AIGgA 315 (431)
T PRK13352 263 MVEGPGHVPLDQIEANVKLQKRLCHGAPFYVLGP-LVTDIAPGYDHITSAIGGA 315 (431)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhCCCCceecCc-cccccCCCchHHHHHHHHH
Confidence 34454322 3455555555444468899999953 2223345677777777654
No 236
>PRK09726 antitoxin HipB; Provisional
Probab=20.81 E-value=1.6e+02 Score=18.29 Aligned_cols=25 Identities=4% Similarity=-0.011 Sum_probs=19.8
Q ss_pred hhcCCCCCCHHHHHHHHHHcCCchh
Q 030793 90 FTQGKYIGDKEFLVECARKVGVEGA 114 (171)
Q Consensus 90 ~~~g~~i~~~~~L~~ia~~~Gld~~ 114 (171)
|..|....+.+.|..++..+|++.+
T Consensus 45 ~e~g~~~ps~~~l~~ia~~lgv~~~ 69 (88)
T PRK09726 45 FENNPDNTTLTTFFKILQSLELSMT 69 (88)
T ss_pred HHCCCCCCCHHHHHHHHHHcCCCcc
Confidence 4556655688899999999999876
No 237
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=20.81 E-value=1.3e+02 Score=21.76 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=18.8
Q ss_pred CCeeeeccCCCHHHHHHHHHHHh
Q 030793 148 NGKHELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 148 ~~~~~i~G~~~~~~~~~~l~~~~ 170 (171)
+||..+.|+.+.++...+++++.
T Consensus 55 SGKiviTGaks~e~a~~a~~~i~ 77 (174)
T cd04516 55 SGKMVCTGAKSEDDSKLAARKYA 77 (174)
T ss_pred CCeEEEEecCCHHHHHHHHHHHH
Confidence 68988899999998888777653
No 238
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=20.75 E-value=1.3e+02 Score=21.80 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=19.1
Q ss_pred CCeeeeccCCCHHHHHHHHHHHh
Q 030793 148 NGKHELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 148 ~~~~~i~G~~~~~~~~~~l~~~~ 170 (171)
+||..+.|+.+.++...+++++.
T Consensus 55 SGKiv~tGaks~~~a~~a~~~~~ 77 (174)
T cd04518 55 SGKMVCTGAKSVEDLHRAVKEII 77 (174)
T ss_pred CCeEEEEccCCHHHHHHHHHHHH
Confidence 68888899999998888877653
No 239
>PLN00062 TATA-box-binding protein; Provisional
Probab=20.59 E-value=1.3e+02 Score=21.94 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=18.9
Q ss_pred CCeeeeccCCCHHHHHHHHHHHh
Q 030793 148 NGKHELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 148 ~~~~~i~G~~~~~~~~~~l~~~~ 170 (171)
.||..+.|+.+.++...++++..
T Consensus 55 SGKiviTGaks~e~a~~a~~~~~ 77 (179)
T PLN00062 55 SGKMVCTGAKSEHDSKLAARKYA 77 (179)
T ss_pred CCeEEEEecCCHHHHHHHHHHHH
Confidence 68988899999998888777653
No 240
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=20.50 E-value=66 Score=21.70 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=10.9
Q ss_pred hhCCCC-cccEEEE
Q 030793 135 YSANIS-GVPHFVL 147 (171)
Q Consensus 135 ~~~gv~-gvPtfvv 147 (171)
.+.+|. |+|||++
T Consensus 83 ~~~~I~~~iPT~~~ 96 (119)
T cd02952 83 TDPKLTTGVPTLLR 96 (119)
T ss_pred hccCcccCCCEEEE
Confidence 368888 9999987
No 241
>PRK00394 transcription factor; Reviewed
Probab=20.38 E-value=1.4e+02 Score=21.80 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=19.4
Q ss_pred CCeeeeccCCCHHHHHHHHHHHh
Q 030793 148 NGKHELSGGQPPEVYLRAFQVAA 170 (171)
Q Consensus 148 ~~~~~i~G~~~~~~~~~~l~~~~ 170 (171)
+|+..+.|+.+.++...+++++.
T Consensus 54 sGKiv~tGa~S~~~a~~a~~~~~ 76 (179)
T PRK00394 54 SGKVVCTGAKSVEDLHEAVKIII 76 (179)
T ss_pred CCcEEEEccCCHHHHHHHHHHHH
Confidence 68988899999999988887653
No 242
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=20.37 E-value=2.8e+02 Score=24.22 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=32.2
Q ss_pred hhcCCCCC-hHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793 117 FLDDPNSG-LNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 169 (171)
Q Consensus 117 ~~~~~~~~-~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~ 169 (171)
.++.++.. ..+|+.+.+.+..=+.+.|+|+++- ....=+..|+.+..+|..+
T Consensus 413 MIEGPGHVPl~~I~~N~~lqk~lc~~APfYvLGP-LvTDIApGYDHItsAIGaA 465 (607)
T PRK09284 413 MIEGPGHVPMHLIKENMDKQLEHCHEAPFYTLGP-LTTDIAPGYDHITSAIGAA 465 (607)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhhCCCCeeecCC-cccccCCCchHHHHHHHHH
Confidence 44555322 3567776666555578999999953 2223345677778777654
No 243
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=20.20 E-value=2.1e+02 Score=16.96 Aligned_cols=32 Identities=19% Similarity=0.115 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCc
Q 030793 77 KQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVE 112 (171)
Q Consensus 77 ~~~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld 112 (171)
++.++.+.|-+.+-..|.. ..+++|++.+|+.
T Consensus 7 rQ~~vL~~I~~~~~~~G~~----Pt~rEIa~~~g~~ 38 (65)
T PF01726_consen 7 RQKEVLEFIREYIEENGYP----PTVREIAEALGLK 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHSS-------HHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHcCCC----CCHHHHHHHhCCC
Confidence 5566676666655556664 3688999999986
No 244
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.19 E-value=2.7e+02 Score=18.33 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh
Q 030793 81 LAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA 114 (171)
Q Consensus 81 ~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~ 114 (171)
....+|+.+|..+ .++..+...-+|..+||+.+
T Consensus 65 ~ah~~fd~lw~~~-~~~R~~aY~wLA~~lgi~~~ 97 (102)
T PF11672_consen 65 AAHRAFDPLWQSG-HMSRSDAYRWLAKKLGIPVE 97 (102)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHcCCChH
Confidence 3456777777754 35677888889999999865
No 245
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=20.12 E-value=1.3e+02 Score=20.25 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=9.1
Q ss_pred HHHHHHHHHcCCch
Q 030793 100 EFLVECARKVGVEG 113 (171)
Q Consensus 100 ~~L~~ia~~~Gld~ 113 (171)
..+.+++++.|++-
T Consensus 74 ~~~~~~~~~~~~~~ 87 (146)
T PF08534_consen 74 PPVREFLKKYGINF 87 (146)
T ss_dssp HHHHHHHHHTTTTS
T ss_pred HHHHHHHHhhCCCc
Confidence 33777777776664
No 246
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=20.04 E-value=1.8e+02 Score=17.74 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=23.7
Q ss_pred hCCCCcccEEEECC------eeeeccCCCHHHHHHHHH
Q 030793 136 SANISGVPHFVLNG------KHELSGGQPPEVYLRAFQ 167 (171)
Q Consensus 136 ~~gv~gvPtfvv~~------~~~i~G~~~~~~~~~~l~ 167 (171)
++| .-+|-+.++| .....+.-+.+.+.+.|+
T Consensus 45 ~Y~-~~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 45 KYG-YRIPVLHIDGIRQFKEQEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp HSC-TSTSEEEETT-GGGCTSEEEESSB-HHHHHHHHH
T ss_pred Hhc-CCCCEEEEcCcccccccceeCCCCCHHHHHHHhC
Confidence 577 4699999999 666778888888888764
Done!