Query 030794
Match_columns 171
No_of_seqs 124 out of 1172
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:40:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 2E-46 4.3E-51 280.7 15.8 142 1-155 1-152 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 1.1E-45 2.3E-50 271.7 12.9 136 6-155 2-147 (148)
3 KOG0425 Ubiquitin-protein liga 100.0 2.1E-43 4.5E-48 260.1 16.1 157 1-157 1-167 (171)
4 KOG0419 Ubiquitin-protein liga 100.0 1.3E-43 2.9E-48 254.3 13.3 136 3-152 2-147 (152)
5 PTZ00390 ubiquitin-conjugating 100.0 2.3E-41 5.1E-46 255.1 16.7 136 6-155 3-148 (152)
6 KOG0426 Ubiquitin-protein liga 100.0 2.2E-41 4.7E-46 243.2 14.1 151 1-152 1-161 (165)
7 PLN00172 ubiquitin conjugating 100.0 4.4E-41 9.5E-46 252.4 16.4 134 7-154 3-146 (147)
8 KOG0418 Ubiquitin-protein liga 100.0 3.4E-38 7.3E-43 238.9 13.5 140 1-156 1-154 (200)
9 KOG0424 Ubiquitin-protein liga 100.0 9.7E-38 2.1E-42 227.1 13.6 142 3-155 2-157 (158)
10 PF00179 UQ_con: Ubiquitin-con 100.0 2.1E-37 4.5E-42 230.4 12.9 129 9-149 1-139 (140)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 7.5E-36 1.6E-40 222.3 14.5 129 8-149 2-140 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 4.2E-35 9.1E-40 219.2 15.2 134 8-153 1-144 (145)
13 KOG0421 Ubiquitin-protein liga 100.0 1.4E-35 3.1E-40 215.9 10.7 135 4-152 28-171 (175)
14 KOG0894 Ubiquitin-protein liga 100.0 3.4E-32 7.4E-37 210.1 14.4 120 1-133 1-120 (244)
15 KOG0422 Ubiquitin-protein liga 100.0 3.5E-32 7.6E-37 197.1 11.9 137 6-155 3-149 (153)
16 KOG0427 Ubiquitin conjugating 100.0 2.2E-30 4.8E-35 186.1 12.6 115 4-133 14-129 (161)
17 KOG0416 Ubiquitin-protein liga 100.0 1.2E-29 2.5E-34 189.7 10.0 137 5-158 3-151 (189)
18 KOG0420 Ubiquitin-protein liga 100.0 6.6E-29 1.4E-33 185.9 10.6 132 4-151 27-171 (184)
19 KOG0423 Ubiquitin-protein liga 100.0 7.3E-29 1.6E-33 185.9 5.9 137 6-156 11-157 (223)
20 KOG0428 Non-canonical ubiquiti 99.9 4.9E-25 1.1E-29 173.5 10.8 115 4-132 10-124 (314)
21 KOG0895 Ubiquitin-conjugating 99.8 6.8E-21 1.5E-25 174.1 6.6 133 6-145 852-986 (1101)
22 KOG0429 Ubiquitin-conjugating 99.8 1.3E-18 2.8E-23 135.3 12.4 137 8-159 22-174 (258)
23 KOG0895 Ubiquitin-conjugating 99.7 2.9E-17 6.2E-22 150.6 10.8 128 5-139 282-413 (1101)
24 KOG0896 Ubiquitin-conjugating 99.6 2.9E-15 6.4E-20 108.5 7.6 122 1-133 1-126 (138)
25 KOG0897 Predicted ubiquitin-co 99.1 9.5E-11 2.1E-15 82.8 4.9 100 55-171 13-115 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.7 8.9E-08 1.9E-12 70.6 7.8 66 51-129 34-105 (133)
27 PF05743 UEV: UEV domain; Int 98.4 5.5E-07 1.2E-11 65.5 4.5 81 35-133 32-120 (121)
28 PF08694 UFC1: Ubiquitin-fold 97.8 9.1E-06 2E-10 60.0 2.1 77 4-94 23-117 (161)
29 KOG2391 Vacuolar sorting prote 97.6 0.0003 6.5E-09 58.9 8.4 81 42-136 55-143 (365)
30 PF14462 Prok-E2_E: Prokaryoti 97.2 0.0057 1.2E-07 44.5 9.5 103 23-129 12-120 (122)
31 KOG3357 Uncharacterized conser 97.2 0.00051 1.1E-08 50.1 3.7 83 5-94 27-120 (167)
32 PF05773 RWD: RWD domain; Int 96.5 0.012 2.6E-07 41.0 6.7 69 8-78 4-74 (113)
33 PF14457 Prok-E2_A: Prokaryoti 95.9 0.011 2.4E-07 45.1 3.9 65 57-133 57-129 (162)
34 smart00591 RWD domain in RING 95.8 0.074 1.6E-06 36.6 7.5 27 51-77 39-65 (107)
35 PF09765 WD-3: WD-repeat regio 87.8 0.82 1.8E-05 38.1 4.2 90 7-133 101-191 (291)
36 KOG4018 Uncharacterized conser 82.4 5.5 0.00012 31.6 6.3 63 8-75 5-71 (215)
37 KOG0309 Conserved WD40 repeat- 80.6 8.8 0.00019 36.2 7.8 68 7-77 422-491 (1081)
38 PF06113 BRE: Brain and reprod 69.7 30 0.00065 29.4 7.7 69 35-128 53-124 (333)
39 TIGR03737 PRTRC_B PRTRC system 59.4 13 0.00029 29.9 3.7 38 76-130 131-172 (228)
40 smart00340 HALZ homeobox assoc 58.3 9.4 0.0002 22.5 1.9 16 6-21 20-35 (44)
41 PF14460 Prok-E2_D: Prokaryoti 58.1 12 0.00026 28.6 3.1 19 76-94 90-111 (175)
42 KOG4445 Uncharacterized conser 48.8 22 0.00049 29.9 3.4 25 53-77 45-69 (368)
43 cd00421 intradiol_dioxygenase 45.0 34 0.00074 25.2 3.7 25 52-76 65-90 (146)
44 cd03457 intradiol_dioxygenase_ 41.9 39 0.00085 26.2 3.7 25 52-76 86-110 (188)
45 PF06113 BRE: Brain and reprod 39.6 39 0.00085 28.8 3.6 24 53-76 306-329 (333)
46 PF03366 YEATS: YEATS family; 38.6 1.1E+02 0.0023 20.5 5.0 42 36-79 2-43 (84)
47 cd03459 3,4-PCD Protocatechuat 33.0 68 0.0015 24.2 3.7 25 52-76 72-101 (158)
48 PRK11700 hypothetical protein; 31.9 2.5E+02 0.0054 21.9 10.5 92 3-94 49-174 (187)
49 KOG3285 Spindle assembly check 31.2 96 0.0021 24.2 4.2 42 5-47 119-160 (203)
50 PF04363 DUF496: Protein of un 29.2 1.4E+02 0.0031 20.5 4.3 41 109-160 43-83 (95)
51 PF09606 Med15: ARC105 or Med1 29.0 18 0.0004 34.3 0.0 25 54-78 715-739 (799)
52 PF14455 Metal_CEHH: Predicted 27.9 2.8E+02 0.006 21.2 6.5 67 6-77 6-76 (177)
53 COG0544 Tig FKBP-type peptidyl 27.2 1.3E+02 0.0028 26.6 4.9 15 53-67 209-223 (441)
54 PF13950 Epimerase_Csub: UDP-g 27.1 67 0.0014 20.2 2.4 18 110-127 37-54 (62)
55 PF00779 BTK: BTK motif; Inte 24.8 25 0.00054 19.4 0.0 17 78-94 2-19 (32)
56 PRK05423 hypothetical protein; 24.2 2.2E+02 0.0048 19.8 4.6 41 109-160 50-90 (104)
57 cd05845 Ig2_L1-CAM_like Second 23.5 2.1E+02 0.0045 19.5 4.5 26 50-77 16-41 (95)
58 TIGR02423 protocat_alph protoc 22.7 1.2E+02 0.0027 23.6 3.6 24 52-75 96-124 (193)
59 PF12065 DUF3545: Protein of u 21.5 70 0.0015 20.2 1.6 12 7-18 36-47 (59)
60 KOG1047 Bifunctional leukotrie 20.7 99 0.0021 28.4 2.9 28 49-77 249-279 (613)
61 cd05511 Bromo_TFIID Bromodomai 20.3 63 0.0014 22.7 1.4 38 114-152 54-92 (112)
62 KOG1814 Predicted E3 ubiquitin 20.2 95 0.0021 27.3 2.6 20 56-75 77-97 (445)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-46 Score=280.74 Aligned_cols=142 Identities=42% Similarity=0.786 Sum_probs=134.0
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794 1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80 (171)
Q Consensus 1 Ma~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 80 (171)
|++..|.+||++|+++|++++++++++.+.+++|+++|+++|.||++||||||+|++.|.||++||++||+|+|+++|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 67666999999999999999999999999866699999999999999999999999999999999999999999999999
Q ss_pred CccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHH
Q 030794 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCF 150 (171)
Q Consensus 81 pnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~ 150 (171)
|||+.+|.|||++|+ ++|+|+++|++||++|+++|.+ ++.++.++..+|.+++++++
T Consensus 81 PNV~~~G~vCLdIL~-------------~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~ 147 (153)
T COG5078 81 PNVDPSGNVCLDILK-------------DRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWV 147 (153)
T ss_pred CCcCCCCCChhHHHh-------------CCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHH
Confidence 999999999999997 9999999999999999999977 44489999999999999999
Q ss_pred Hhhhh
Q 030794 151 LSVHS 155 (171)
Q Consensus 151 ~~~~~ 155 (171)
+.++.
T Consensus 148 ~~~~~ 152 (153)
T COG5078 148 KKYAE 152 (153)
T ss_pred HHhcc
Confidence 98764
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-45 Score=271.66 Aligned_cols=136 Identities=35% Similarity=0.703 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCC
Q 030794 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP 85 (171)
Q Consensus 6 a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 85 (171)
+.+||+||+++|.+++++|+++.+. ++|++.|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+.
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~-~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPV-GDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCC-CCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 3569999999999999999999985 999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCc----------HHHhhccchhhHHHHHHHHHhhhh
Q 030794 86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY----------AWFLMNAGYEYGNTLHSCFLSVHS 155 (171)
Q Consensus 86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 155 (171)
.|+||+++|+ +.|+|+++|++||++|+++|.++ +.++..+..+|.++||++++++|.
T Consensus 81 ~G~IclDILk-------------~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 81 NGRICLDILK-------------DQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred cccchHHhhh-------------ccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 9999999998 88999999999999999999873 337888999999999999999885
No 3
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-43 Score=260.14 Aligned_cols=157 Identities=59% Similarity=1.049 Sum_probs=148.4
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794 1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80 (171)
Q Consensus 1 Ma~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 80 (171)
|+++++..-|+++|++|++++..|+++...|++|+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.|.+||
T Consensus 1 m~~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH 80 (171)
T KOG0425|consen 1 MTSSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH 80 (171)
T ss_pred CccchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence 78888999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHH
Q 030794 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCF 150 (171)
Q Consensus 81 pnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~ 150 (171)
||||++|++|+++|.+++.++++.+.-++.|+|.+|+++||++|.+||.+ ++..++++..+|.++++.|+
T Consensus 81 PNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~v 160 (171)
T KOG0425|consen 81 PNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCV 160 (171)
T ss_pred CCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999955 44578899999999999999
Q ss_pred Hhhhhhh
Q 030794 151 LSVHSVA 157 (171)
Q Consensus 151 ~~~~~~~ 157 (171)
......+
T Consensus 161 r~s~e~~ 167 (171)
T KOG0425|consen 161 RRSQEEA 167 (171)
T ss_pred HHHHHhh
Confidence 8765443
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-43 Score=254.33 Aligned_cols=136 Identities=38% Similarity=0.732 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794 3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82 (171)
Q Consensus 3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 82 (171)
+++|.+||.+|+++|+++++.||+..|. ++|+++|.+.|+||.+|||+||.|++.|+|.++||.+||.|+|++.+||||
T Consensus 2 stpArrrLmrDfkrlqedpp~gisa~P~-~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 2 STPARRRLMRDFKRLQEDPPAGISAAPV-ENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CchHHHHHHHHHHHhhcCCCCCccCCCC-ccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 4899999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794 83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLS 152 (171)
Q Consensus 83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~ 152 (171)
||.+|.+|+++|. .+|+|.|++.+||.+||+||.+ ++.+++++..+|.+++++.+.+
T Consensus 81 vya~G~iClDiLq-------------NrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veq 147 (152)
T KOG0419|consen 81 VYADGSICLDILQ-------------NRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQ 147 (152)
T ss_pred cCCCCcchHHHHh-------------cCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHH
Confidence 9999999999997 8999999999999999999966 5558999999999999988765
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=2.3e-41 Score=255.08 Aligned_cols=136 Identities=26% Similarity=0.518 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCC
Q 030794 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP 85 (171)
Q Consensus 6 a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 85 (171)
+.+||++|+++|.+++++|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~-~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~ 81 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPD-PGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 81 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEC-CCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC
Confidence 5799999999999999999999986 789999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhhhh
Q 030794 86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSVHS 155 (171)
Q Consensus 86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (171)
+|.||+++|. ++|+|++||.+||++|+++|.+ ++.++.++..+|.++++++++++|.
T Consensus 82 ~G~iCl~iL~-------------~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 82 LGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred CCeEECccCc-------------ccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 9999999996 8999999999999999999976 4447888999999999999998876
No 6
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-41 Score=243.17 Aligned_cols=151 Identities=45% Similarity=0.829 Sum_probs=141.0
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794 1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80 (171)
Q Consensus 1 Ma~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 80 (171)
|| ..|.|||.+||++|..++++||.+.|.+++|+++|.+.|.||++|+|+||+|..++.||.|||.+||+++|.-.+||
T Consensus 1 m~-~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fH 79 (165)
T KOG0426|consen 1 MA-GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFH 79 (165)
T ss_pred Cc-hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeeccccc
Confidence 55 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHH
Q 030794 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCF 150 (171)
Q Consensus 81 pnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~ 150 (171)
||||++|++|+++|..++.+|++++.+.+.|+|.++++.||+++.++|.. +.-+-++++.+|.+.++..+
T Consensus 80 PNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lv 159 (165)
T KOG0426|consen 80 PNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLV 159 (165)
T ss_pred CcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999966 33367777888888777766
Q ss_pred Hh
Q 030794 151 LS 152 (171)
Q Consensus 151 ~~ 152 (171)
.+
T Consensus 160 rK 161 (165)
T KOG0426|consen 160 RK 161 (165)
T ss_pred HH
Confidence 54
No 7
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=4.4e-41 Score=252.41 Aligned_cols=134 Identities=36% Similarity=0.700 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCCC
Q 030794 7 SLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPD 86 (171)
Q Consensus 7 ~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 86 (171)
.+||++|+++|++++++++++.+. ++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.+
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~-~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~ 81 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPS-DENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN 81 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEC-CCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence 589999999999999999999986 8899999999999999999999999999999999999999999999999999999
Q ss_pred CceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhhh
Q 030794 87 GKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSVH 154 (171)
Q Consensus 87 G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 154 (171)
|.||+++|. ++|+|+++|++||.+|+++|.+ ++.++.++..+|.++++++++++|
T Consensus 82 G~iCl~il~-------------~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 82 GSICLDILR-------------DQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CEEEcccCc-------------CCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 999999996 8999999999999999999976 344788899999999999998765
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-38 Score=238.91 Aligned_cols=140 Identities=29% Similarity=0.517 Sum_probs=130.1
Q ss_pred CchHHHHHHHHHHHHHHhhCC---CCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC
Q 030794 1 MAKSQASLLLQKQLKDLCKNP---VDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (171)
Q Consensus 1 Ma~~~a~~Rl~~El~~l~~~~---~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 77 (171)
|+ + +.+||++|.+++.+++ ..||.++.. .+|+.+..+.|.||++||||||.|.++|++|++||++||+|+|.|+
T Consensus 1 m~-~-~~~ri~~e~k~v~~~~eisq~~I~ve~v-n~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~Tk 77 (200)
T KOG0418|consen 1 MS-N-AFKRINREQKEVLDDPEISQAGIIVEMV-NENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITK 77 (200)
T ss_pred Cc-c-HHHHHHHHHHHhccChhhhhcceEEEEc-cCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeee
Confidence 55 4 9999999999999998 689999998 7899999999999999999999999999999999999999999999
Q ss_pred CccCccCC-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH----------HhhccchhhHHHH
Q 030794 78 MWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW----------FLMNAGYEYGNTL 146 (171)
Q Consensus 78 i~HpnV~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~----------~~~~~~~~~~~~~ 146 (171)
||||||++ +|.|||++|. +.|++++||+++|++||++|.++++ ++.++..-|.+++
T Consensus 78 IwHPnVSs~tGaICLDilk-------------d~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TA 144 (200)
T KOG0418|consen 78 IWHPNVSSQTGAICLDILK-------------DQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTA 144 (200)
T ss_pred eecCCCCcccccchhhhhh-------------cccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHH
Confidence 99999988 9999999997 9999999999999999999977444 6777888899999
Q ss_pred HHHHHhhhhh
Q 030794 147 HSCFLSVHSV 156 (171)
Q Consensus 147 ~~~~~~~~~~ 156 (171)
+.|...+|..
T Consensus 145 r~WT~~fA~~ 154 (200)
T KOG0418|consen 145 RYWTTEFAGG 154 (200)
T ss_pred HHHHHHHhCC
Confidence 9999998874
No 9
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-38 Score=227.11 Aligned_cols=142 Identities=30% Similarity=0.536 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCeEEEecCC----CCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCC
Q 030794 3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDE----SNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78 (171)
Q Consensus 3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~----~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 78 (171)
|+.+..||++|-+.+.++.+-|+++.|... .|++.|.|.|.|+++|+||||.|.+.+.||++||.+||+++|.+++
T Consensus 2 s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl 81 (158)
T KOG0424|consen 2 SGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPL 81 (158)
T ss_pred cchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCC
Confidence 477899999999999999999999998733 4799999999999999999999999999999999999999999999
Q ss_pred ccCccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH----------HhhccchhhHHHHHH
Q 030794 79 WHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW----------FLMNAGYEYGNTLHS 148 (171)
Q Consensus 79 ~HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~----------~~~~~~~~~~~~~~~ 148 (171)
||||||+.|.|||++|.. ..+|+|+.||.+||..||+||.+++. .|..+..+|.+++|+
T Consensus 82 ~HPNVypsgtVcLsiL~e-----------~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~ 150 (158)
T KOG0424|consen 82 FHPNVYPSGTVCLSILNE-----------EKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRA 150 (158)
T ss_pred cCCCcCCCCcEehhhhcc-----------ccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHH
Confidence 999999999999999973 24599999999999999999966322 688899999999999
Q ss_pred HHHhhhh
Q 030794 149 CFLSVHS 155 (171)
Q Consensus 149 ~~~~~~~ 155 (171)
+++.++.
T Consensus 151 qak~~a~ 157 (158)
T KOG0424|consen 151 QAKEYAK 157 (158)
T ss_pred HHHHhcc
Confidence 9988764
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2.1e-37 Score=230.36 Aligned_cols=129 Identities=40% Similarity=0.771 Sum_probs=112.7
Q ss_pred HHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCCCCc
Q 030794 9 LLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGK 88 (171)
Q Consensus 9 Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~ 88 (171)
||++|+++|+++++.|+.+.+.+++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+|+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999984459999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHH
Q 030794 89 VCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSC 149 (171)
Q Consensus 89 iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~ 149 (171)
||+++|. .+.|+|+++|.+||.+|+++|.+ ++.++.++..+|.+++++|
T Consensus 81 icl~~l~------------~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~ 139 (140)
T PF00179_consen 81 ICLDILN------------PESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREW 139 (140)
T ss_dssp BGHGGGT------------TTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred chhhhhh------------cccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHc
Confidence 9999997 25699999999999999999965 3336777777788777776
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=7.5e-36 Score=222.33 Aligned_cols=129 Identities=43% Similarity=0.748 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCCCC
Q 030794 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDG 87 (171)
Q Consensus 8 ~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G 87 (171)
+||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+.+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~-~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPV-EENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEEC-CCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence 79999999999999999999996 77999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCc----------HHHhhccchhhHHHHHHH
Q 030794 88 KVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY----------AWFLMNAGYEYGNTLHSC 149 (171)
Q Consensus 88 ~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~----------~~~~~~~~~~~~~~~~~~ 149 (171)
.||+++|.. ++|+|+++|.+||.+|+++|.++ +.++.++..+|.+++++|
T Consensus 81 ~icl~~l~~------------~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~ 140 (141)
T cd00195 81 KICLSILKT------------HGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREW 140 (141)
T ss_pred CCchhhcCC------------CCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHh
Confidence 999999971 35999999999999999999762 224555555555555554
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=4.2e-35 Score=219.23 Aligned_cols=134 Identities=37% Similarity=0.708 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCCCC
Q 030794 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDG 87 (171)
Q Consensus 8 ~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G 87 (171)
+||++|++++++++++|+.+.+.+++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 59999999999999999999987445999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhh
Q 030794 88 KVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSV 153 (171)
Q Consensus 88 ~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~ 153 (171)
.||++.|. .++|+|+++|.+||.+|+++|.+ ++.++.++...|.++++.+++++
T Consensus 81 ~icl~~l~------------~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~ 144 (145)
T smart00212 81 EICLDILK------------QEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKY 144 (145)
T ss_pred CEehhhcC------------CCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 99999995 26899999999999999999966 34477888888989998888764
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-35 Score=215.88 Aligned_cols=135 Identities=33% Similarity=0.572 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCcc
Q 030794 4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV 83 (171)
Q Consensus 4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 83 (171)
....|||++||..|+....+||++.|. .+|++.|..+|.||++|+|+|..|++.+.||.+||++||.|.|+|+.|||||
T Consensus 28 ~~V~KRLq~ELm~Lmms~~~gISAFP~-~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 28 HSVTKRLQSELMGLMMSNTPGISAFPE-SDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred chHHHHHHHHHHHHHhcCCCCcccCcC-cCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 457899999999999999999999996 8899999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCc---------HHHhhccchhhHHHHHHHHHh
Q 030794 84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY---------AWFLMNAGYEYGNTLHSCFLS 152 (171)
Q Consensus 84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~---------~~~~~~~~~~~~~~~~~~~~~ 152 (171)
+..|.|||++|. +.|+..|.+++||++||++|-++ +..+-.+..+|.+.+.++.++
T Consensus 107 D~~GnIcLDILk-------------dKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 107 DLSGNICLDILK-------------DKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWSDQEEYKKYLEALYKE 171 (175)
T ss_pred cccccchHHHHH-------------HHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhcCHHHHHHHHHHHhhc
Confidence 999999999997 99999999999999999999442 224555778898888887765
No 14
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-32 Score=210.12 Aligned_cols=120 Identities=28% Similarity=0.574 Sum_probs=111.1
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794 1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80 (171)
Q Consensus 1 Ma~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 80 (171)
||+..|.+||+|||+.|+++|+++|.+.|. ++|+.+||.+|.||++|||+||.|+.++.||++||++||.|++.||-
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~-p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN-- 77 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPN-PNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN-- 77 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCC-ccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC--
Confidence 899999999999999999999999999997 99999999999999999999999999999999999999999999982
Q ss_pred CccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW 133 (171)
Q Consensus 81 pnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~ 133 (171)
..+-.+-++||++.+ +|.+.|+|+++|.+||..|.++|.+..+
T Consensus 78 GRFktntRLCLSiSD----------fHPdsWNP~WsVStILtGLlSFM~e~~p 120 (244)
T KOG0894|consen 78 GRFKTNTRLCLSISD----------FHPDSWNPGWSVSTILTGLLSFMTEDSP 120 (244)
T ss_pred CceecCceEEEeccc----------cCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence 344456799999987 7889999999999999999999977433
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.5e-32 Score=197.14 Aligned_cols=137 Identities=28% Similarity=0.530 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCC
Q 030794 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP 85 (171)
Q Consensus 6 a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 85 (171)
+.+||+|||.+|+++....+.-...+++|++.|++.|. |++-||..|.|.++|.||.+|||+||+|.|.|.||||||++
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 78999999999999998766554456889999999999 89999999999999999999999999999999999999999
Q ss_pred CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcH----------HHhhccchhhHHHHHHHHHhhhh
Q 030794 86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYA----------WFLMNAGYEYGNTLHSCFLSVHS 155 (171)
Q Consensus 86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 155 (171)
.|.+|+.++. .+.|.|+.+.++||++|.+++-+++ ..|.++.-.|.+++.+++++++.
T Consensus 82 ~gqvClPiis------------~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 82 KGQVCLPIIS------------AENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CCceeeeeee------------cccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 9999999997 4999999999999999999996633 36888888899999999888753
No 16
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-30 Score=186.11 Aligned_cols=115 Identities=30% Similarity=0.645 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCC-ccCc
Q 030794 4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM-WHPN 82 (171)
Q Consensus 4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpn 82 (171)
..|++||||||.+++.+++.|+.... .+|+..|.+-+.|.+||.|+|..|.++++||+.||++.|.|.|+.++ .||+
T Consensus 14 ~~at~RLqKEl~e~q~~pP~G~~~~v--~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPH 91 (161)
T KOG0427|consen 14 KIATNRLQKELSEWQNNPPTGFKHRV--TDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPH 91 (161)
T ss_pred HHHHHHHHHHHHHHhcCCCCcceeec--ccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCc
Confidence 57899999999999999999999984 68999999999999999999999999999999999999999999996 8999
Q ss_pred cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794 83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW 133 (171)
Q Consensus 83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~ 133 (171)
||+||-|||++|. +.|+|+.++.+|+++|.+||.+-..
T Consensus 92 iYSNGHICL~iL~-------------d~WsPAmsv~SvClSIlSMLSSs~e 129 (161)
T KOG0427|consen 92 IYSNGHICLDILY-------------DSWSPAMSVQSVCLSILSMLSSSKE 129 (161)
T ss_pred eecCCeEEEEeec-------------ccCCcchhhHHHHHHHHHHHccCcc
Confidence 9999999999997 9999999999999999999977444
No 17
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-29 Score=189.65 Aligned_cols=137 Identities=22% Similarity=0.566 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccC
Q 030794 5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVY 84 (171)
Q Consensus 5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 84 (171)
...||+..|+..|... +..+... ++++.++++.+.||.+|||+||+++++|.+|++||++.|.|.|+++||||||+
T Consensus 3 ~~~rRid~Dv~KL~~s---~yeV~~i-nd~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNID 78 (189)
T KOG0416|consen 3 SGKRRIDTDVMKLLMS---DYEVTII-NDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNID 78 (189)
T ss_pred CcccchhhHHHHHHhc---CCeEEEe-cCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCch
Confidence 5679999999988754 3556665 77899999999999999999999999999999999999999999999999999
Q ss_pred C-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC-----------cHHHhhccchhhHHHHHHHHHh
Q 030794 85 P-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN-----------YAWFLMNAGYEYGNTLHSCFLS 152 (171)
Q Consensus 85 ~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~-----------~~~~~~~~~~~~~~~~~~~~~~ 152 (171)
. +|.|||++++ ..|+|.|.|..|+....-.|+. ++.++..+..+|.+++++|+++
T Consensus 79 e~SGsVCLDViN-------------QtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~k 145 (189)
T KOG0416|consen 79 EASGSVCLDVIN-------------QTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKK 145 (189)
T ss_pred hccCccHHHHHh-------------hhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHH
Confidence 8 9999999998 8899999999999888777755 5558888999999999999999
Q ss_pred hhhhhh
Q 030794 153 VHSVAC 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
+|....
T Consensus 146 YA~~~~ 151 (189)
T KOG0416|consen 146 YATPEA 151 (189)
T ss_pred hcChhh
Confidence 998764
No 18
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.6e-29 Score=185.90 Aligned_cols=132 Identities=31% Similarity=0.537 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecC-CCCce--EEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794 4 SQASLLLQKQLKDLCKNPVDGFSAGLVD-ESNVF--EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80 (171)
Q Consensus 4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~-~~n~~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 80 (171)
+.+..||++|+.++ +.+++++....+ .++.. +..++|. |+++.|+||.|.|.+.+|+.||+.||+|.|+|+|||
T Consensus 27 s~a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~H 103 (184)
T KOG0420|consen 27 SAALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYH 103 (184)
T ss_pred cHHHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecccc
Confidence 56888999998888 556666543222 33443 5999998 999999999999999999999999999999999999
Q ss_pred CccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHH
Q 030794 81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCF 150 (171)
Q Consensus 81 pnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~ 150 (171)
|||+.+|.|||++|+ ++|+|+.+|.+|+..|+.+|.+ |+.++..+...|..++|...
T Consensus 104 PNId~~GnVCLnILR-------------edW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m 170 (184)
T KOG0420|consen 104 PNIDLDGNVCLNILR-------------EDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAM 170 (184)
T ss_pred CCcCCcchHHHHHHH-------------hcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHH
Confidence 999999999999998 8899999999999999999976 44466677777777777654
Q ss_pred H
Q 030794 151 L 151 (171)
Q Consensus 151 ~ 151 (171)
.
T Consensus 171 ~ 171 (184)
T KOG0420|consen 171 S 171 (184)
T ss_pred h
Confidence 3
No 19
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.3e-29 Score=185.89 Aligned_cols=137 Identities=25% Similarity=0.436 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCC
Q 030794 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP 85 (171)
Q Consensus 6 a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 85 (171)
.++.+.+|++.+...+++||.+.+. +.|.....+.|-||.+|||++|+|++.+.+..|||++||+-.|+|+||||||-.
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~N-eeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaa 89 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVN-EEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAA 89 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecC-hHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCccc
Confidence 5788999999999999999999985 889999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH----------HhhccchhhHHHHHHHHHhhhh
Q 030794 86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW----------FLMNAGYEYGNTLHSCFLSVHS 155 (171)
Q Consensus 86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 155 (171)
||.||...|. .+|+|+..|+.||..|+.+|..+.+ ++.++-++|.+++|.+..-+++
T Consensus 90 NGEICVNtLK-------------kDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~ 156 (223)
T KOG0423|consen 90 NGEICVNTLK-------------KDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAK 156 (223)
T ss_pred Cceehhhhhh-------------cccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 9999999997 8999999999999999999977444 5667778888888888887776
Q ss_pred h
Q 030794 156 V 156 (171)
Q Consensus 156 ~ 156 (171)
.
T Consensus 157 p 157 (223)
T KOG0423|consen 157 P 157 (223)
T ss_pred C
Confidence 5
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.9e-25 Score=173.54 Aligned_cols=115 Identities=30% Similarity=0.588 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCcc
Q 030794 4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV 83 (171)
Q Consensus 4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 83 (171)
+++.|||.||.++|+ +|.+.+.+.|. ++|+|+|+++|.||.+|-|+||+||.+|.||.+||++||.+-.+|+ +..+
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~pl-EdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRF 85 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPL-EDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRF 85 (314)
T ss_pred CHHHHHHHHHHHHhc-Cchhhhhhccc-hhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCce
Confidence 789999999999998 88888889998 9999999999999999999999999999999999999999999988 2445
Q ss_pred CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcH
Q 030794 84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYA 132 (171)
Q Consensus 84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~ 132 (171)
.-|-+|||++.+ +|.+.|.|+++|++.|+.|..+|-+.+
T Consensus 86 E~nkKiCLSISg----------yHPEtWqPSWSiRTALlAlIgFmPt~p 124 (314)
T KOG0428|consen 86 EVNKKICLSISG----------YHPETWQPSWSIRTALLALIGFMPTKP 124 (314)
T ss_pred eeCceEEEEecC----------CCccccCcchhHHHHHHHHHccccCCC
Confidence 557789999986 778999999999999999999996533
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=6.8e-21 Score=174.07 Aligned_cols=133 Identities=32% Similarity=0.475 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC--CccCcc
Q 030794 6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE--MWHPNV 83 (171)
Q Consensus 6 a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HpnV 83 (171)
..+..+.|++.|..+.+.||.+... ++.|....+.|.||++|||.+|+|.|++.||++||..||.|...+. .++||.
T Consensus 852 ~~~~~~~~~~~~~~~~~~~~~vr~~-e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl 930 (1101)
T KOG0895|consen 852 WAKKVQTEWKILPLSLPSGIFVRAY-EDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL 930 (1101)
T ss_pred HHHHHHHHHHhhhccCCCceEEEec-hHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc
Confidence 3455667888888899999999985 9999999999999999999999999999999999999999999987 689999
Q ss_pred CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHHHhhccchhhHHH
Q 030794 84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLMNAGYEYGNT 145 (171)
Q Consensus 84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~~~~~~~~~~~~~ 145 (171)
|.+|++|+++|+.+.+-+. +.|+|+-++.+||.+||.|++.+.+.||+.|++-.+.
T Consensus 931 y~~g~vc~s~l~tw~g~~~------e~w~~~s~~lq~l~s~q~l~l~~~py~ne~gy~~~~g 986 (1101)
T KOG0895|consen 931 YEDGKVCLSLLNTWHGRGN------EVWNPSSSILQVLVSIQGLVLNEEPYFNEAGYEKQRG 986 (1101)
T ss_pred ccccceehhhhccccCCCc------cccCcchhHHHHHHHhhhhhcccccccCccccccccc
Confidence 9999999999987766555 8999999999999999999999999899988765443
No 22
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.3e-18 Score=135.33 Aligned_cols=137 Identities=20% Similarity=0.367 Sum_probs=121.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCC--CCCeeEEecCCccCccCC
Q 030794 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPV--SPPTVRFTSEMWHPNVYP 85 (171)
Q Consensus 8 ~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~HpnV~~ 85 (171)
.-|..|+..+.+.+.+||++.|. ..|-+.|.++|+ ...+.|.||+|+|+|.+|++||. .-|+|.|.++++||+|.+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPS-yan~l~WFGViF-vr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp 99 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPS-YANKLLWFGVIF-VRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICP 99 (258)
T ss_pred HHHHHHHHHHHhccCCceEEccc-ccccceEEEEEE-EecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCC
Confidence 35677888889999999999997 889999999999 57889999999999999999994 679999999999999988
Q ss_pred -CCceeeccCCCCCCCCCCCCCCCCCCCccC-cHHHHHHHHHHhhcC------------cHHHhhccchhhHHHHHHHHH
Q 030794 86 -DGKVCISILHPPGDDPNGYELATERWTPVH-TAASVWRSLSPGVLN------------YAWFLMNAGYEYGNTLHSCFL 151 (171)
Q Consensus 86 -~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~-~l~~il~~i~~ll~~------------~~~~~~~~~~~~~~~~~~~~~ 151 (171)
++.+|+.-.. ..|+-.. .|..||..||..|.+ ++.++.++..+|.+++++|++
T Consensus 100 ~skeLdl~raf-------------~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk 166 (258)
T KOG0429|consen 100 KSKELDLNRAF-------------PEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVK 166 (258)
T ss_pred CccceeHhhhh-------------hhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHH
Confidence 8999998765 4599966 999999999999965 556899999999999999999
Q ss_pred hhhhhhhh
Q 030794 152 SVHSVACH 159 (171)
Q Consensus 152 ~~~~~~~~ 159 (171)
...+.-++
T Consensus 167 ~sr~~iyD 174 (258)
T KOG0429|consen 167 ASRSMIYD 174 (258)
T ss_pred HHHHHhcC
Confidence 87775544
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.9e-17 Score=150.56 Aligned_cols=128 Identities=34% Similarity=0.530 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC---CccC
Q 030794 5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE---MWHP 81 (171)
Q Consensus 5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~Hp 81 (171)
-..+|+++|++.+.++.++|+.+.+. +.+|...++.|.||.++||++|+|.|+|.||..||..||.|.+++. .+.|
T Consensus 282 ~~skrv~ke~~llskdlpEgifvrp~-e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nP 360 (1101)
T KOG0895|consen 282 NWSKKVAKELKLLSKDLPEGIFVRPD-EGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNP 360 (1101)
T ss_pred hhHHHHHHHhhhhcccCCCCcccccc-ccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecC
Confidence 45789999999999999999999986 9999999999999999999999999999999999999999999998 5899
Q ss_pred ccCCCCceeeccCCCCCCCCCCCCCCCCCCCcc-CcHHHHHHHHHHhhcCcHHHhhccc
Q 030794 82 NVYPDGKVCISILHPPGDDPNGYELATERWTPV-HTAASVWRSLSPGVLNYAWFLMNAG 139 (171)
Q Consensus 82 nV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~-~~l~~il~~i~~ll~~~~~~~~~~~ 139 (171)
|.|.+|+||+++|..+.+-.+ +.|+|. .+|.++|..||.++....+.+++.+
T Consensus 361 NlYn~GKVcLslLgTwtg~~~------e~wtp~~~sl~qvL~sIQ~Li~~e~Py~ne~g 413 (1101)
T KOG0895|consen 361 NLYNDGKVCLSLLGTWTGSRR------EKWTPNGSSLLQVLESIQGLILNEEPYFNEPG 413 (1101)
T ss_pred CcccCceEEeeeeeecccccc------cCCCccccchhhhhhhhhhhhcccCccccccc
Confidence 999999999999976654433 899998 7999999999999987644444443
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.9e-15 Score=108.46 Aligned_cols=122 Identities=29% Similarity=0.452 Sum_probs=98.8
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCC-eEEEecCCCCce--EEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC
Q 030794 1 MAKSQASLLLQKQLKDLCKNPVDG-FSAGLVDESNVF--EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (171)
Q Consensus 1 Ma~~~a~~Rl~~El~~l~~~~~~~-i~~~~~~~~n~~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 77 (171)
|+..++..||.+|+.+=++...++ ++....|.+|+. .|..+|.||+.|+||+.+|.++|...++||..||+|+|.++
T Consensus 1 ~~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk 80 (138)
T KOG0896|consen 1 MVKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK 80 (138)
T ss_pred CCccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE
Confidence 555678899999999877766655 555554455544 89999999999999999999999999999999999999999
Q ss_pred CccCccCC-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794 78 MWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW 133 (171)
Q Consensus 78 i~HpnV~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~ 133 (171)
+--+-|.. +|.+.-..+.. ..+|+-.|+++.+|..++..++...+
T Consensus 81 inm~gvn~~~g~Vd~~~i~~-----------L~~W~~~y~~~~vl~~lr~~m~~~eN 126 (138)
T KOG0896|consen 81 INMNGVNSSNGVVDPRDITV-----------LARWQRSYSIKMVLGQLRKEMMSKEN 126 (138)
T ss_pred eeecccccCCCccCccccch-----------hhcccccchhhHHHHhhhHHHHHHHh
Confidence 97777766 67764433221 27999999999999999988776555
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=9.5e-11 Score=82.82 Aligned_cols=100 Identities=16% Similarity=0.302 Sum_probs=76.6
Q ss_pred EEEEEEcCCCCCCCCCeeEEecCCc-cCccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794 55 FNAIMTFPDNYPVSPPTVRFTSEMW-HPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW 133 (171)
Q Consensus 55 f~~~i~fp~~YP~~pP~v~f~t~i~-HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~ 133 (171)
.-+.+.|+++||+.||++|.+.|+- ..-|-.+|.||+.+|+. ++|+.+|+|+.++++|-..+.....
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~------------qgwssay~Ve~vi~qiaatlVkG~~ 80 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTK------------QGWSSAYEVERVIMQIAATLVKGGA 80 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHcc------------ccccchhhHHHHHHHHHHHhhccce
Confidence 3567789999999999999998853 34566789999999984 8999999999999999999865332
Q ss_pred HhhccchhhHH--HHHHHHHhhhhhhhhhHHHHhcccCCC
Q 030794 134 FLMNAGYEYGN--TLHSCFLSVHSVACHLMAVVIGSESWW 171 (171)
Q Consensus 134 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~ 171 (171)
+.++.. ....+..+.|...+..+.-.++..+|.
T Consensus 81 -----ri~~~a~k~sk~~s~~qa~~sfksLv~~heksg~~ 115 (122)
T KOG0897|consen 81 -----RIEFPAEKSSKLYSHSQAQQSFKSLVQIHEKSGWV 115 (122)
T ss_pred -----eEecCcchhhhHhhHHHHHHHHHHHHHHHHhcCCc
Confidence 222222 222666667777788888888888874
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.69 E-value=8.9e-08 Score=70.62 Aligned_cols=66 Identities=29% Similarity=0.583 Sum_probs=59.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEecCC---ccCccCCCCceee---ccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHH
Q 030794 51 EGGFFNAIMTFPDNYPVSPPTVRFTSEM---WHPNVYPDGKVCI---SILHPPGDDPNGYELATERWTPVHTAASVWRSL 124 (171)
Q Consensus 51 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HpnV~~~G~iCl---~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i 124 (171)
.|+.+.+.|.||++||..||.|....+. +=|||+.+|.+|+ +.. .+.|+|.-++.++|...
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~-------------~D~~~P~~~~~~~l~~a 100 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELV-------------LDPWDPEGIIADCLERA 100 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcc-------------cCccCHHHHHHHHHHHH
Confidence 6899999999999999999999998764 6799999999999 444 38999999999999999
Q ss_pred HHhhc
Q 030794 125 SPGVL 129 (171)
Q Consensus 125 ~~ll~ 129 (171)
+.+|.
T Consensus 101 ~~lL~ 105 (133)
T PF14461_consen 101 IRLLE 105 (133)
T ss_pred HHHHH
Confidence 99987
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.36 E-value=5.5e-07 Score=65.46 Aligned_cols=81 Identities=23% Similarity=0.389 Sum_probs=55.6
Q ss_pred ceEEEEEEECCCCCCCCCcEEEEE--EEcCCCCCCCCCeeEEecCC-----ccCccCCCCceeeccCCCCCCCCCCCCCC
Q 030794 35 VFEWSVSIIGPPDTLYEGGFFNAI--MTFPDNYPVSPPTVRFTSEM-----WHPNVYPDGKVCISILHPPGDDPNGYELA 107 (171)
Q Consensus 35 ~~~w~~~i~Gp~~tpy~gg~f~~~--i~fp~~YP~~pP~v~f~t~i-----~HpnV~~~G~iCl~~l~~~~~~~~~~~~~ 107 (171)
+....++|. -.|+|..|.+- |-+|.+||.+||.|...... -+.+|+.+|+|.+..|
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL------------- 94 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL------------- 94 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-------------
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-------------
Confidence 445555553 36888888654 55799999999999775442 3459999999999999
Q ss_pred CCCCCc-cCcHHHHHHHHHHhhcCcHH
Q 030794 108 TERWTP-VHTAASVWRSLSPGVLNYAW 133 (171)
Q Consensus 108 ~~~W~p-~~~l~~il~~i~~ll~~~~~ 133 (171)
+.|++ ..+|.+++..++..|...++
T Consensus 95 -~~W~~~~s~L~~lv~~l~~~F~~~pP 120 (121)
T PF05743_consen 95 -QNWNPPSSNLVDLVQELQAVFSEEPP 120 (121)
T ss_dssp -HT--TTTS-HHHHHHHHHHCCCHS-S
T ss_pred -ccCCCCCCCHHHHHHHHHHHHhHcCC
Confidence 68999 77999999999988765543
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.84 E-value=9.1e-06 Score=59.97 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhh-------CCCCCeEEEecCCCCceEEEEEEECCCCCCCCCc----------EEEEEEEcCCCCC
Q 030794 4 SQASLLLQKQLKDLCK-------NPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGG----------FFNAIMTFPDNYP 66 (171)
Q Consensus 4 ~~a~~Rl~~El~~l~~-------~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP 66 (171)
....+||++||+.|-+ +..+-+.++. -++||-|.|. .|.+++.+|..||
T Consensus 23 ~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~les--------------n~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP 88 (161)
T PF08694_consen 23 DLWVQRLKEEYQALIKYVENNKENDNDWFRLES--------------NKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYP 88 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT---EEEEE---------------TTSSEEEEEEEEEETTEEEEEEEEEE--TTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCeEEecc--------------CCCCCccccEEEEEeeeeeEEEeeecCCCccCC
Confidence 3467899999998743 2223344442 2444444442 3556677799999
Q ss_pred CCCCeeEEecC-CccCccCCCCceeeccC
Q 030794 67 VSPPTVRFTSE-MWHPNVYPDGKVCISIL 94 (171)
Q Consensus 67 ~~pP~v~f~t~-i~HpnV~~~G~iCl~~l 94 (171)
..||.|....- --..-.|.+|+|||+.-
T Consensus 89 ~t~pEi~lPeLdGKTaKMYRGGkIClt~H 117 (161)
T PF08694_consen 89 TTAPEIALPELDGKTAKMYRGGKICLTDH 117 (161)
T ss_dssp TS----B-GGGTTT-SSBCCCCBB---TT
T ss_pred CCCcceeccccCCchhhhhcCceEeeecc
Confidence 99999987543 13345678999999864
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.0003 Score=58.87 Aligned_cols=81 Identities=23% Similarity=0.396 Sum_probs=63.9
Q ss_pred EECCCCCCCCCcEEEEEEE--cCCCCCCCCCeeEEecC-----CccCccCCCCceeeccCCCCCCCCCCCCCCCCCCCc-
Q 030794 42 IIGPPDTLYEGGFFNAIMT--FPDNYPVSPPTVRFTSE-----MWHPNVYPDGKVCISILHPPGDDPNGYELATERWTP- 113 (171)
Q Consensus 42 i~Gp~~tpy~gg~f~~~i~--fp~~YP~~pP~v~f~t~-----i~HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p- 113 (171)
+.|---.+|.|..|.+-|. +.+.||..||.+..... -.|-+|+.+|+|.|..| ..|.+
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL--------------h~W~~p 120 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL--------------HNWDPP 120 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh--------------ccCCCc
Confidence 3343335889988887665 59999999999966433 14899999999999999 57998
Q ss_pred cCcHHHHHHHHHHhhcCcHHHhh
Q 030794 114 VHTAASVWRSLSPGVLNYAWFLM 136 (171)
Q Consensus 114 ~~~l~~il~~i~~ll~~~~~~~~ 136 (171)
+..|..++..|.+.|.+.++.+.
T Consensus 121 ssdLv~Liq~l~a~f~~~pP~ys 143 (365)
T KOG2391|consen 121 SSDLVGLIQELIAAFSEDPPVYS 143 (365)
T ss_pred cchHHHHHHHHHHHhcCCCcccc
Confidence 66899999999999887776554
No 30
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=97.19 E-value=0.0057 Score=44.47 Aligned_cols=103 Identities=16% Similarity=0.275 Sum_probs=69.5
Q ss_pred CCeEEEecCCCCceEEEEEEEC--CCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCCCCce--eeccC-CCC
Q 030794 23 DGFSAGLVDESNVFEWSVSIIG--PPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKV--CISIL-HPP 97 (171)
Q Consensus 23 ~~i~~~~~~~~n~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~i--Cl~~l-~~~ 97 (171)
.|+..+-+.+ .-..|.+ |.| .+.+.|....-.+.|.+|+.||..+|.+.+..|-.... .+|.+ |-+.. ...
T Consensus 12 ~g~~~E~v~e-g~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~ 87 (122)
T PF14462_consen 12 RGLRWETVTE-GGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFD 87 (122)
T ss_pred cCceEEEEEe-CCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcC
Confidence 3566666523 3334544 544 67778999999999999999999999998887732211 12223 33222 222
Q ss_pred CCCCCCCCCCCCCCCccC-cHHHHHHHHHHhhc
Q 030794 98 GDDPNGYELATERWTPVH-TAASVWRSLSPGVL 129 (171)
Q Consensus 98 ~~~~~~~~~~~~~W~p~~-~l~~il~~i~~ll~ 129 (171)
|..=+.|+-|...|+|.. +|.+.|..|...|.
T Consensus 88 G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 88 GRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred CeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 344456777788999987 89999998887764
No 31
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.00051 Score=50.10 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCc----------EEEEEEEcCCCCCCCCCeeEE
Q 030794 5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGG----------FFNAIMTFPDNYPVSPPTVRF 74 (171)
Q Consensus 5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f 74 (171)
...+||++||+.|-.-. + .+.++-..|.-.-.-+++|-|-|. .|.+++.+|-.||..+|.|..
T Consensus 27 ~wvqrlkeey~sli~yv------q-nnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial 99 (167)
T KOG3357|consen 27 LWVQRLKEEYQSLIAYV------Q-NNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL 99 (167)
T ss_pred HHHHHHHHHHHHHHHHH------H-hCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc
Confidence 46789999999874311 1 111222223222234677777663 355666779999999999975
Q ss_pred ecCC-ccCccCCCCceeeccC
Q 030794 75 TSEM-WHPNVYPDGKVCISIL 94 (171)
Q Consensus 75 ~t~i-~HpnV~~~G~iCl~~l 94 (171)
..-- -.--.|.+|+||+..-
T Consensus 100 peldgktakmyrggkiclt~h 120 (167)
T KOG3357|consen 100 PELDGKTAKMYRGGKICLTDH 120 (167)
T ss_pred cccCchhhhhhcCceEeeccc
Confidence 4321 1224567899999654
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.54 E-value=0.012 Score=40.97 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEEC--CCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCC
Q 030794 8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIG--PPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78 (171)
Q Consensus 8 ~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 78 (171)
.+.+.|+..|+.--+..+ ... ...+...+.+.+.+ ...+.-....+++.+.||++||..+|.|.+.++.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEI-ESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSS-TSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-ccc-ccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 467788888887666555 111 23445556666632 2334445578999999999999999999876553
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.89 E-value=0.011 Score=45.08 Aligned_cols=65 Identities=20% Similarity=0.317 Sum_probs=52.1
Q ss_pred EEEEcCCCCCCCCCeeEEecCCc---cCccCCC-----CceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhh
Q 030794 57 AIMTFPDNYPVSPPTVRFTSEMW---HPNVYPD-----GKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGV 128 (171)
Q Consensus 57 ~~i~fp~~YP~~pP~v~f~t~i~---HpnV~~~-----G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll 128 (171)
+.|.|+.+||..+|.|.++.+.| +||++.. ..+|+-.-. ...|.++.+++.+|..|..-|
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~------------~~e~~~~~g~~~~l~rl~~Wl 124 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP------------WSEWRPSWGPEGFLDRLFDWL 124 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC------------HHHhhhccCHHHHHHHHHHHH
Confidence 56889999999999888877643 5777665 679997654 278999999999999999998
Q ss_pred cCcHH
Q 030794 129 LNYAW 133 (171)
Q Consensus 129 ~~~~~ 133 (171)
..++.
T Consensus 125 ~~aA~ 129 (162)
T PF14457_consen 125 RDAAQ 129 (162)
T ss_pred HHHhh
Confidence 66443
No 34
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.77 E-value=0.074 Score=36.64 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=22.5
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEecC
Q 030794 51 EGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (171)
Q Consensus 51 ~gg~f~~~i~fp~~YP~~pP~v~f~t~ 77 (171)
....+.+.+.||++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 446688999999999999999977653
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=87.77 E-value=0.82 Score=38.06 Aligned_cols=90 Identities=13% Similarity=0.296 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCCC
Q 030794 7 SLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPD 86 (171)
Q Consensus 7 ~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 86 (171)
.++|.+|+.++..+.. +.+.. ++++....+++..- .....++|.+|.+||.++|.+...-|+
T Consensus 101 ys~ll~EIe~IGW~kl--~~i~~--d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P~-------- 162 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKL--VQIQF--DDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLPI-------- 162 (291)
T ss_dssp C-CHHHHHHHHHCGCC--EEEEE---CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TTS--------
T ss_pred HHHHHHHHHHhccccc--eEEec--CCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCCc--------
Confidence 4578888888876654 33322 45777888888621 256779999999999999976433222
Q ss_pred CceeeccCCCCCCCCCCCCCCCCCCCc-cCcHHHHHHHHHHhhcCcHH
Q 030794 87 GKVCISILHPPGDDPNGYELATERWTP-VHTAASVWRSLSPGVLNYAW 133 (171)
Q Consensus 87 G~iCl~~l~~~~~~~~~~~~~~~~W~p-~~~l~~il~~i~~ll~~~~~ 133 (171)
.. ...|.+ ..+|.+++...+..+..-..
T Consensus 163 -----~~--------------~~~w~~~~ssL~~v~~qF~~~le~lq~ 191 (291)
T PF09765_consen 163 -----PF--------------SLSWSPSQSSLKDVVQQFQEALESLQE 191 (291)
T ss_dssp ------H--------------HHHHHCHT-SHHHHHHHHHHHHHHTHH
T ss_pred -----ch--------------hhhhcccccCHHHHHHHHHHHHHHHHH
Confidence 11 156999 66999999999888765444
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=82.42 E-value=5.5 Score=31.64 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhCCCCCe-EEEecCCCCceEEEEEEECCCCCC---CCCcEEEEEEEcCCCCCCCCCeeEEe
Q 030794 8 LLLQKQLKDLCKNPVDGF-SAGLVDESNVFEWSVSIIGPPDTL---YEGGFFNAIMTFPDNYPVSPPTVRFT 75 (171)
Q Consensus 8 ~Rl~~El~~l~~~~~~~i-~~~~~~~~n~~~w~~~i~Gp~~tp---y~gg~f~~~i~fp~~YP~~pP~v~f~ 75 (171)
.-..+|+.-|....+..+ .+. ..++..+.++|. ...+- |.| .+.+.+.++++||..+|.|.+.
T Consensus 5 EeQe~E~EaLeSIY~de~~~i~---~~~~~~f~v~iq-~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 5 EEQEEELEALESIYPDEFKHIN---SEDPPIFEVTIQ-YEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHHHHhccchhhhhh---ccCCccceeeee-cccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence 345567777776665554 332 223333556665 33322 333 7889999999999999999443
No 37
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=80.63 E-value=8.8 Score=36.16 Aligned_cols=68 Identities=19% Similarity=0.370 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCc-EEEEEEEcCCCCCC-CCCeeEEecC
Q 030794 7 SLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGG-FFNAIMTFPDNYPV-SPPTVRFTSE 77 (171)
Q Consensus 7 ~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg-~f~~~i~fp~~YP~-~pP~v~f~t~ 77 (171)
.+-|.+|+.-|-.. .+.+.++..|-. -.+-.+++-||-.-. .|- ..++.|.||.+||. .+|.++|..+
T Consensus 422 pQnLgeE~S~Ig~k-~~nV~fEkidva-~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 422 PQNLGEEFSLIGVK-IRNVNFEKIDVA-DRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhHHhHHhHhhcc-ccccceEeeccc-cceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 34566777766433 234555544222 224455555543322 343 44788999999997 6799999876
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=69.70 E-value=30 Score=29.45 Aligned_cols=69 Identities=20% Similarity=0.379 Sum_probs=50.0
Q ss_pred ceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC-CccCccCCCCceeeccCCCCCCCCCCCCCCCCCCCc
Q 030794 35 VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE-MWHPNVYPDGKVCISILHPPGDDPNGYELATERWTP 113 (171)
Q Consensus 35 ~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~-i~HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p 113 (171)
...+.+.| ||.|-..+-+|.|-..||..||.+.|-.. -|+|..+. +..| ..|++
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~-----l~~L--------------~~Wd~ 107 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK-----LPSL--------------VNWDP 107 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh-----cchh--------------hcCCC
Confidence 44666666 89999999999999999999999999643 47774321 2333 57888
Q ss_pred cC--cHHHHHHHHHHhh
Q 030794 114 VH--TAASVWRSLSPGV 128 (171)
Q Consensus 114 ~~--~l~~il~~i~~ll 128 (171)
.- .+..++..|..+-
T Consensus 108 ~dp~~Ll~li~EL~~~Y 124 (333)
T PF06113_consen 108 SDPNCLLNLISELRQLY 124 (333)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 55 6667777776543
No 39
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=59.39 E-value=13 Score=29.86 Aligned_cols=38 Identities=21% Similarity=0.518 Sum_probs=25.6
Q ss_pred cCCccC---ccCCCCceeeccCCCCCCCCCCCCCCCCCCCccC-cHHHHHHHHHHhhcC
Q 030794 76 SEMWHP---NVYPDGKVCISILHPPGDDPNGYELATERWTPVH-TAASVWRSLSPGVLN 130 (171)
Q Consensus 76 t~i~Hp---nV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~-~l~~il~~i~~ll~~ 130 (171)
|++||. ||+.+|+||+... . .|.. ++.+ +......|++
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~---------------~-~P~~~~~~~-i~~we~~FF~ 172 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNA---------------R-LPDRPTVAN-ISAWEDAFFS 172 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCC---------------c-CCCCcCHHH-HHHHHHHHhC
Confidence 335663 9999999999643 1 5544 6666 7777777644
No 40
>smart00340 HALZ homeobox associated leucin zipper.
Probab=58.34 E-value=9.4 Score=22.47 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhCC
Q 030794 6 ASLLLQKQLKDLCKNP 21 (171)
Q Consensus 6 a~~Rl~~El~~l~~~~ 21 (171)
-.+||++|+++|....
T Consensus 20 eNrRL~ke~~eLralk 35 (44)
T smart00340 20 ENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4689999999987643
No 41
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=58.07 E-value=12 Score=28.59 Aligned_cols=19 Identities=37% Similarity=0.739 Sum_probs=14.6
Q ss_pred cCCcc---CccCCCCceeeccC
Q 030794 76 SEMWH---PNVYPDGKVCISIL 94 (171)
Q Consensus 76 t~i~H---pnV~~~G~iCl~~l 94 (171)
|++|| +||+.+|+||+...
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~ 111 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNN 111 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCC
Confidence 44555 49999999999764
No 42
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=48.77 E-value=22 Score=29.90 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=23.0
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEecC
Q 030794 53 GFFNAIMTFPDNYPVSPPTVRFTSE 77 (171)
Q Consensus 53 g~f~~~i~fp~~YP~~pP~v~f~t~ 77 (171)
-.+.+.+..++.||...|.|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5788999999999999999999987
No 43
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=45.03 E-value=34 Score=25.23 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=22.1
Q ss_pred CcEEEEEEEcCCCCC-CCCCeeEEec
Q 030794 52 GGFFNAIMTFPDNYP-VSPPTVRFTS 76 (171)
Q Consensus 52 gg~f~~~i~fp~~YP-~~pP~v~f~t 76 (171)
.|.|.|.-.+|--|| .+||.|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 489999999999999 9999997753
No 44
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=41.91 E-value=39 Score=26.25 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=22.3
Q ss_pred CcEEEEEEEcCCCCCCCCCeeEEec
Q 030794 52 GGFFNAIMTFPDNYPVSPPTVRFTS 76 (171)
Q Consensus 52 gg~f~~~i~fp~~YP~~pP~v~f~t 76 (171)
.|.|.|.-.+|--||.++|.|.|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 4889999999999999999998764
No 45
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=39.56 E-value=39 Score=28.76 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=20.5
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEec
Q 030794 53 GFFNAIMTFPDNYPVSPPTVRFTS 76 (171)
Q Consensus 53 g~f~~~i~fp~~YP~~pP~v~f~t 76 (171)
=.|-++|.+|..||...|.++|.+
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe
Confidence 346777888999999999999875
No 46
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=38.64 E-value=1.1e+02 Score=20.54 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=27.6
Q ss_pred eEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCc
Q 030794 36 FEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79 (171)
Q Consensus 36 ~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 79 (171)
..|.+.|.|+.+.....-+=++...+-+.|+. |...+..|.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 57999999888765555666788888888876 6665555533
No 47
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=33.01 E-value=68 Score=24.16 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=21.8
Q ss_pred CcEEEEEEEcCCCCC-----CCCCeeEEec
Q 030794 52 GGFFNAIMTFPDNYP-----VSPPTVRFTS 76 (171)
Q Consensus 52 gg~f~~~i~fp~~YP-----~~pP~v~f~t 76 (171)
.|.|.|.-.+|--|| .+||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 388999999999999 8999997753
No 48
>PRK11700 hypothetical protein; Provisional
Probab=31.89 E-value=2.5e+02 Score=21.95 Aligned_cols=92 Identities=17% Similarity=0.378 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHH----hhCCCCC--eEEEec-CCCCceEEEEEEE---CCCCCCC-CCcEEEEEEEcC---------
Q 030794 3 KSQASLLLQKQLKDL----CKNPVDG--FSAGLV-DESNVFEWSVSII---GPPDTLY-EGGFFNAIMTFP--------- 62 (171)
Q Consensus 3 ~~~a~~Rl~~El~~l----~~~~~~~--i~~~~~-~~~n~~~w~~~i~---Gp~~tpy-~gg~f~~~i~fp--------- 62 (171)
+..+.+|+++.+.+. ..+...| |++.-. .+=..-.|.+.+. -|.+.-| ..|+=|+++.+|
T Consensus 49 ~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~ 128 (187)
T PRK11700 49 QNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDAR 128 (187)
T ss_pred CHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHH
Confidence 345677888877764 3344444 433322 1223345655443 2545555 457889999987
Q ss_pred -----CCCCCCCCeeEEec--C------CccCccC-CCCceeeccC
Q 030794 63 -----DNYPVSPPTVRFTS--E------MWHPNVY-PDGKVCISIL 94 (171)
Q Consensus 63 -----~~YP~~pP~v~f~t--~------i~HpnV~-~~G~iCl~~l 94 (171)
++.|..++-|++.. | ..+|-|- ++|.+|+..-
T Consensus 129 ~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~~~vcIK~H 174 (187)
T PRK11700 129 ALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTDGGICIKFH 174 (187)
T ss_pred HHHhccccccccCCcEEEecCCCccCccCCCCcEEEeeCCEEEEEc
Confidence 34555666666554 3 5677664 4899999754
No 49
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.15 E-value=96 Score=24.20 Aligned_cols=42 Identities=10% Similarity=0.125 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCC
Q 030794 5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPD 47 (171)
Q Consensus 5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~ 47 (171)
...+||++|++.+.++....++.-|. -+....+.+.+.--++
T Consensus 119 k~~~~iq~EIraviRQItasVtfLP~-Le~~ctFdvLiyTdkD 160 (203)
T KOG3285|consen 119 KDLKRIQNEIRAVIRQITASVTFLPL-LEEICTFDVLIYTDKD 160 (203)
T ss_pred hHHHHHHHHHHHHHHHHhhheeeccc-ccceeEEEEEEEeCCC
Confidence 35789999999999988888887776 4455667777764443
No 50
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=29.21 E-value=1.4e+02 Score=20.46 Aligned_cols=41 Identities=5% Similarity=0.099 Sum_probs=29.9
Q ss_pred CCCCccCcHHHHHHHHHHhhcCcHHHhhccchhhHHHHHHHHHhhhhhhhhh
Q 030794 109 ERWTPVHTAASVWRSLSPGVLNYAWFLMNAGYEYGNTLHSCFLSVHSVACHL 160 (171)
Q Consensus 109 ~~W~p~~~l~~il~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (171)
+-=+|.+|+++|..-|.++ ..+|..++.++....|..++..
T Consensus 43 ~YI~~~Ms~edi~~II~nM-----------r~DYEdRVDDyiIknAElsKeR 83 (95)
T PF04363_consen 43 DYIKPDMSIEDIRAIIENM-----------RSDYEDRVDDYIIKNAELSKER 83 (95)
T ss_pred HHccCCCCHHHHHHHHHHH-----------HhHHHHhHHHHHHhhHHHhHHH
Confidence 3446778888888777766 6678888888888877766554
No 51
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=29.04 E-value=18 Score=34.30 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=0.0
Q ss_pred EEEEEEEcCCCCCCCCCeeEEecCC
Q 030794 54 FFNAIMTFPDNYPVSPPTVRFTSEM 78 (171)
Q Consensus 54 ~f~~~i~fp~~YP~~pP~v~f~t~i 78 (171)
+=-+.|.+|.|||..+|.+.+.+.-
T Consensus 715 VPPl~l~vP~~YP~~sp~~~~~~~~ 739 (799)
T PF09606_consen 715 VPPLRLTVPADYPRQSPQCSVDRDE 739 (799)
T ss_dssp -------------------------
T ss_pred CCCeeEeCCCCCCccCCcCcccHHH
Confidence 3357889999999999998775553
No 52
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=27.87 E-value=2.8e+02 Score=21.17 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhCCC----CCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC
Q 030794 6 ASLLLQKQLKDLCKNPV----DGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (171)
Q Consensus 6 a~~Rl~~El~~l~~~~~----~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 77 (171)
+.+..-+|++.+..... .|+.+. +.+.-...+.+..|+-.|-. -...+++.| .||-..||.|.|+.+
T Consensus 6 SrakFdR~V~~~~~~~~a~r~rgwfLi---qa~fP~~~~iF~~~kvaP~~-~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 6 SRAKFDRQVGRFRPRADAYRMRGWFLI---QASFPTADVIFAAPKVAPRS-IGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred hHHHHHHHHhhhhhhhhHhhhcCeEEE---EccCceEEEEeeCCccCccc-cceEEEEec-cccCcCCCceEEecc
Confidence 44455677777755441 354443 22344444555446666631 123556666 799999999999988
No 53
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=27.16 E-value=1.3e+02 Score=26.64 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=12.2
Q ss_pred cEEEEEEEcCCCCCC
Q 030794 53 GFFNAIMTFPDNYPV 67 (171)
Q Consensus 53 g~f~~~i~fp~~YP~ 67 (171)
-...+.++||.+|+.
T Consensus 209 e~k~i~vtFP~dy~a 223 (441)
T COG0544 209 EEKDIKVTFPEDYHA 223 (441)
T ss_pred CeeEEEEEcccccch
Confidence 345688999999996
No 54
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=27.09 E-value=67 Score=20.15 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=12.1
Q ss_pred CCCccCcHHHHHHHHHHh
Q 030794 110 RWTPVHTAASVWRSLSPG 127 (171)
Q Consensus 110 ~W~p~~~l~~il~~i~~l 127 (171)
+|.|.++|++++...-..
T Consensus 37 gW~p~~~L~~~i~~~w~W 54 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNW 54 (62)
T ss_dssp ----SSSHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHH
Confidence 799999999999887765
No 55
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=24.84 E-value=25 Score=19.35 Aligned_cols=17 Identities=29% Similarity=0.765 Sum_probs=10.1
Q ss_pred CccCccCCCCc-eeeccC
Q 030794 78 MWHPNVYPDGK-VCISIL 94 (171)
Q Consensus 78 i~HpnV~~~G~-iCl~~l 94 (171)
.|||.++.+|+ .|....
T Consensus 2 ~yHPg~~~~g~W~CC~q~ 19 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCKQT 19 (32)
T ss_dssp EE-SS-EETTCESSSS-S
T ss_pred CcCCCcccCCcCcCCCCc
Confidence 48999999877 566543
No 56
>PRK05423 hypothetical protein; Provisional
Probab=24.22 E-value=2.2e+02 Score=19.81 Aligned_cols=41 Identities=5% Similarity=0.088 Sum_probs=30.0
Q ss_pred CCCCccCcHHHHHHHHHHhhcCcHHHhhccchhhHHHHHHHHHhhhhhhhhh
Q 030794 109 ERWTPVHTAASVWRSLSPGVLNYAWFLMNAGYEYGNTLHSCFLSVHSVACHL 160 (171)
Q Consensus 109 ~~W~p~~~l~~il~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (171)
+-=.|.+|+++|..-|.+| ..+|..++.++....|..++..
T Consensus 50 ~YIk~~Ms~e~i~~II~nM-----------r~DYEdRVDDyiIknAElSKeR 90 (104)
T PRK05423 50 DYIKPGMSIEEIQGIIANM-----------KSDYEDRVDDYIIKNAELSKER 90 (104)
T ss_pred HHcCCCCCHHHHHHHHHHH-----------HhhHHHhhHHHHHhhHHhhHHH
Confidence 4456788888887777766 5678888888888777766554
No 57
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=23.45 E-value=2.1e+02 Score=19.52 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=19.9
Q ss_pred CCCcEEEEEEEcCCCCCCCCCeeEEecC
Q 030794 50 YEGGFFNAIMTFPDNYPVSPPTVRFTSE 77 (171)
Q Consensus 50 y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 77 (171)
-+|.-+.|.-.-|..|| +|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 35667778877888998 588888865
No 58
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=22.66 E-value=1.2e+02 Score=23.61 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=20.3
Q ss_pred CcEEEEEEEcCCCCCC-----CCCeeEEe
Q 030794 52 GGFFNAIMTFPDNYPV-----SPPTVRFT 75 (171)
Q Consensus 52 gg~f~~~i~fp~~YP~-----~pP~v~f~ 75 (171)
.|.|.|.-..|-.||. +||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4889999999999998 88887664
No 59
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=21.53 E-value=70 Score=20.20 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHh
Q 030794 7 SLLLQKQLKDLC 18 (171)
Q Consensus 7 ~~Rl~~El~~l~ 18 (171)
.+||++||+++-
T Consensus 36 r~rL~kEL~d~D 47 (59)
T PF12065_consen 36 RQRLRKELQDMD 47 (59)
T ss_pred HHHHHHHHHHcc
Confidence 579999999883
No 60
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=20.71 E-value=99 Score=28.37 Aligned_cols=28 Identities=21% Similarity=0.602 Sum_probs=21.7
Q ss_pred CCCCcEEEEEEEcCCCCCC---CCCeeEEecC
Q 030794 49 LYEGGFFNAIMTFPDNYPV---SPPTVRFTSE 77 (171)
Q Consensus 49 py~gg~f~~~i~fp~~YP~---~pP~v~f~t~ 77 (171)
||.=|.|.+ +.+|+.||+ +-|-++|+||
T Consensus 249 pY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 249 PYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CcccccceE-EEecCCCCcccccCcceeeecc
Confidence 555566655 346999997 7799999998
No 61
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=20.33 E-value=63 Score=22.72 Aligned_cols=38 Identities=8% Similarity=-0.062 Sum_probs=25.6
Q ss_pred cC-cHHHHHHHHHHhhcCcHHHhhccchhhHHHHHHHHHh
Q 030794 114 VH-TAASVWRSLSPGVLNYAWFLMNAGYEYGNTLHSCFLS 152 (171)
Q Consensus 114 ~~-~l~~il~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 152 (171)
.| ++.++..-+..++.++ ..|+..+....+.++...+.
T Consensus 54 ~Y~s~~ef~~Dv~li~~Na-~~yN~~~s~i~~~A~~l~~~ 92 (112)
T cd05511 54 KYQSREEFLEDIELIVDNS-VLYNGPDSVYTKKAKEMLEL 92 (112)
T ss_pred CCCCHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHH
Confidence 45 7888888888776665 44888776666555554443
No 62
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.20 E-value=95 Score=27.32 Aligned_cols=20 Identities=30% Similarity=0.738 Sum_probs=14.0
Q ss_pred EEEEEcCCCCCC-CCCeeEEe
Q 030794 56 NAIMTFPDNYPV-SPPTVRFT 75 (171)
Q Consensus 56 ~~~i~fp~~YP~-~pP~v~f~ 75 (171)
.+...+|++||. +||.+...
T Consensus 77 vlkf~LP~~YPs~spP~f~l~ 97 (445)
T KOG1814|consen 77 VLKFHLPNDYPSVSPPKFELK 97 (445)
T ss_pred eeeeecCCccccCCCCceeee
Confidence 356678999996 66666444
Done!