Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>030795
MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQQVDVSKESRGTDG
RRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYT
VQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030795
        (171 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2164371 - symbol:PSAN species:3702 "Arabidopsi...   400  3.0e-37   1


>TAIR|locus:2164371 [details] [associations]
            symbol:PSAN species:3702 "Arabidopsis thaliana"
            [GO:0005516 "calmodulin binding" evidence=IEA;TAS;IPI] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009522 "photosystem I"
            evidence=IEA;TAS] [GO:0009773 "photosynthetic electron transport in
            photosystem I" evidence=RCA;TAS] [GO:0015979 "photosynthesis"
            evidence=IEA] [GO:0042651 "thylakoid membrane" evidence=IEA]
            [GO:0030093 "chloroplast photosystem I" evidence=IPI] [GO:0009543
            "chloroplast thylakoid lumen" evidence=IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0019344
            "cysteine biosynthetic process" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0035304
            "regulation of protein dephosphorylation" evidence=RCA]
            InterPro:IPR008796 Pfam:PF05479 EMBL:CP002688 GO:GO:0009535
            GO:GO:0015979 GO:GO:0009522 IPI:IPI00657428 RefSeq:NP_001032133.2
            UniGene:At.21476 ProteinModelPortal:F4KC80 SMR:F4KC80 PRIDE:F4KC80
            EnsemblPlants:AT5G64040.2 GeneID:836525 KEGG:ath:AT5G64040
            KO:K02701 OMA:SCKFPEN Uniprot:F4KC80
        Length = 181

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 88/146 (60%), Positives = 101/146 (69%)

Query:     1 MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESR 56
             MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  
Sbjct:     1 MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVD 58

Query:    57 GTDGRRXXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSKANKELNDQKRLATSGANFA 116
             G++GRR                        GVIDEYLERSK NKELND+KRLATSGANFA
Sbjct:    59 GSNGRRSAMVFLAATLFSTAAVSASANA--GVIDEYLERSKTNKELNDKKRLATSGANFA 116

Query:   117 RAYTVQFGTCKFPENFTGCQDLAKQK 142
             RA+TVQFG+CKFPENFTGCQDLAKQK
Sbjct:   117 RAFTVQFGSCKFPENFTGCQDLAKQK 142


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      171       147   0.00091  103 3  11 22  0.49    31
                                                     30  0.50    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  139 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.69u 0.09s 12.78t   Elapsed:  00:00:01
  Total cpu time:  12.69u 0.09s 12.78t   Elapsed:  00:00:01
  Start:  Mon May 20 18:59:14 2013   End:  Mon May 20 18:59:15 2013

Back to top