BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030795
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49107|PSAN_ARATH Photosystem I reaction center subunit N, chloroplastic
OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2
Length = 171
Score = 254 bits (650), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 128/175 (73%), Positives = 147/175 (84%), Gaps = 8/175 (4%)
Query: 1 MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESR 56
MAAMNSSVL C+YAI+GS GS ELN K+ V++ G K MPVI+AQ+V V +
Sbjct: 1 MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVD 58
Query: 57 GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFA 116
G++GRR+AM LA TLF+TA A S+SANAGVIDEYLERSK NKELND+KRLATSGANFA
Sbjct: 59 GSNGRRSAMVFLAATLFSTA--AVSASANAGVIDEYLERSKTNKELNDKKRLATSGANFA 116
Query: 117 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
RA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC+GKDKYKCGSNVFWKW
Sbjct: 117 RAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171
>sp|O65107|PSAN_MAIZE Photosystem I reaction center subunit N, chloroplastic (Fragment)
OS=Zea mays GN=PSAN PE=3 SV=1
Length = 112
Score = 170 bits (430), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 75/91 (82%), Positives = 86/91 (94%)
Query: 81 SSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAK 140
+ SA A + DEYLE+SKANKELND+KRLATSGANFARAYTV+FG+C+FP NFTGCQDLAK
Sbjct: 22 TGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAK 81
Query: 141 QKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
QKKVPFISDDLE+EC+GK+K+KCGSNVFWKW
Sbjct: 82 QKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112
>sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N, chloroplastic OS=Hordeum
vulgare GN=PSAN PE=2 SV=1
Length = 145
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 82/106 (77%), Positives = 93/106 (87%)
Query: 66 ALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGT 125
ALL + ATAA++ SA A V DEYLE+SK NKELND+KR ATSGANFARAYTVQFG+
Sbjct: 40 ALLGLAAVFAATAASAGSARASVFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGS 99
Query: 126 CKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
CKFP NFTGCQDLAKQKKVPFI+DDLE+EC+GK+K+KCGSNVFWKW
Sbjct: 100 CKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145
>sp|Q9SBN5|PSAN_VOLCA Photosystem I reaction center subunit N, chloroplastic OS=Volvox
carteri GN=PSAN PE=2 SV=1
Length = 139
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 61/78 (78%)
Query: 88 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFI 147
V+++ L +S ANK LN++KRLATS AN AR+ TV GTC+FPENF GC++LA K V +I
Sbjct: 55 VVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYI 114
Query: 148 SDDLELECKGKDKYKCGS 165
++DL++EC+GKD CGS
Sbjct: 115 AEDLKIECEGKDAKSCGS 132
>sp|Q6BIV1|ISN1_DEBHA IMP-specific 5'-nucleotidase 1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=ISN1 PE=3 SV=2
Length = 485
Score = 36.6 bits (83), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 65 MALLAVTLFTTATAAASSSANAGVIDEY------LERSKANKELNDQKR---LATSG-AN 114
+ LL++ LF AA +GV Y ++R + ELND +R L G +N
Sbjct: 203 IKLLSMNLFIGVVTAAGYPGQSGVPQYYERLKGLIDRIRTTPELNDHQRENLLVMGGESN 262
Query: 115 FARAYTVQFGTCKFPE 130
+ Y +FG KF E
Sbjct: 263 YLFRYDNEFGNLKFIE 278
>sp|C1CNA5|ILVD_STRZP Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae (strain
P1031) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|C1CU32|ILVD_STRZT Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae (strain
Taiwan19F-14) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|C1CH59|ILVD_STRZJ Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae (strain JJA)
GN=ilvD PE=3 SV=1
Length = 567
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|P65160|ILVD_STRR6 Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|P65159|ILVD_STRPN Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|B8ZPQ2|ILVD_STRPJ Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae (strain ATCC
700669 / Spain 23F-1) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|B1I9U2|ILVD_STRPI Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae (strain
Hungary19A-6) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|C1CAX1|ILVD_STRP7 Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae (strain
70585) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|B5E3D3|ILVD_STRP4 Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae serotype 19F
(strain G54) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|Q04I44|ILVD_STRP2 Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae serotype 2
(strain D39 / NCTC 7466) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|B2IN52|ILVD_STRPS Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae (strain
CGSP14) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|Q8DRT7|ILVD_STRMU Dihydroxy-acid dehydratase OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=ilvD PE=3 SV=1
Length = 571
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 45 GVISTWAENTPCNIHLHDFGKLAKVGVKEAGAWPVQFGTI 84
>sp|Q63135|CR1L_RAT Complement component receptor 1-like protein OS=Rattus norvegicus
GN=Cr1l PE=1 SV=1
Length = 559
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 126 CKFPENFTGCQDLAKQKKVPFISDDLELEC------KGKDKYKCGSNVFW 169
CK P++ +G Q + KK + D++ LEC +G + +C S+ W
Sbjct: 357 CKLPQDMSGFQKGLQMKKDYYYGDNVALECEDGYTLEGSSQSQCQSDASW 406
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 126 CKFPENFTGCQDLAKQKKVPFISDDLELEC------KGKDKYKCGSNVFW 169
CK P++ +G Q + KK + D++ LEC +G + +C S+ W
Sbjct: 419 CKLPQDMSGFQKGLQMKKDYYYGDNVALECEDGYTLEGSSQSQCQSDASW 468
>sp|A4VXL9|ILVD_STRSY Dihydroxy-acid dehydratase OS=Streptococcus suis (strain 05ZYH33)
GN=ilvD PE=3 SV=1
Length = 571
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGT 125
GVI + E + N L+D +LA G A A+ VQ+GT
Sbjct: 45 GVISTWAENTPCNIHLHDFGKLAKEGVKEAGAWPVQYGT 83
>sp|A4W3W3|ILVD_STRS2 Dihydroxy-acid dehydratase OS=Streptococcus suis (strain 98HAH33)
GN=ilvD PE=3 SV=1
Length = 571
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGT 125
GVI + E + N L+D +LA G A A+ VQ+GT
Sbjct: 45 GVISTWAENTPCNIHLHDFGKLAKEGVKEAGAWPVQYGT 83
>sp|Q7WCL8|ATKA_BORBR Potassium-transporting ATPase A chain OS=Bordetella bronchiseptica
(strain ATCC BAA-588 / NCTC 13252 / RB50) GN=kdpA PE=3
SV=1
Length = 594
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 30 SVSTPAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVI 89
S S P +R + + + +G+ A + A LF T T AAS A G+
Sbjct: 328 SASAAYFEQQPTPALRQAEAALLADGGNLEGKEARFGVAATALFATVTTAASCGAVNGMH 387
Query: 90 DEY 92
D +
Sbjct: 388 DSF 390
>sp|A2BID7|PRD10_DANRE PR domain zinc finger protein 10 OS=Danio rerio GN=prdm10 PE=3 SV=2
Length = 1121
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 2 AAMNSS-VLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPV 43
AA+NSS V +Y IS G +EL+ K VSV + A GH P+
Sbjct: 1049 AAVNSSQVKTTHYVISD--GQTELDGKQVSVPSTATQGHPDPL 1089
>sp|Q7VVZ9|ATKA_BORPE Potassium-transporting ATPase A chain OS=Bordetella pertussis
(strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=kdpA
PE=3 SV=1
Length = 594
Score = 30.4 bits (67), Expect = 6.3, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 42 PVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEY 92
P +R + + + +G+ A + A LF T T AAS A G+ D +
Sbjct: 340 PALRQAEAALLADGGNLEGKEARFGVAATALFATVTTAASCGAVNGMHDSF 390
>sp|Q7W536|ATKA_BORPA Potassium-transporting ATPase A chain OS=Bordetella parapertussis
(strain 12822 / ATCC BAA-587 / NCTC 13253) GN=kdpA PE=3
SV=1
Length = 594
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 42 PVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEY 92
P +R + + + +G+ A + A LF T T AAS A G+ D +
Sbjct: 340 PALRQAEAALLADGGNLEGKEARFGVAATALFATVTTAASCGAVNGMHDSF 390
>sp|A7ENU3|CLU_SCLS1 Clustered mitochondria protein homolog OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=clu1 PE=3 SV=1
Length = 1311
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Query: 20 GSSELNAKIVSVSTPAVHGHKMPVIRAQQVDV---SKESRGTDG----RRAAMALLAVTL 72
G++ + K V++ + + H+M VIR + V+ K +G +R A + T
Sbjct: 583 GTALDSPKEADVASESAYPHRMTVIRPELVEAYWKVKMREWVNGELERKRQAQKTIEPTA 642
Query: 73 FTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKF---P 129
A + ++ A DE E + K+ ++ + A A + G KF P
Sbjct: 643 EEKEPGAVAEASEASKSDEPTENGELAKKADESDKDAEPSKPAADQERIDIGDFKFALNP 702
Query: 130 ENFTGCQDLAKQKKVPFISDDLEL 153
+ F+G Q ++K F D+ ++
Sbjct: 703 DAFSGQQPQTDEEKAEFAEDEQQV 726
>sp|P42053|PSAN_CUCSA Photosystem I reaction center subunit N (Fragment) OS=Cucumis
sativus GN=PSAN PE=1 SV=1
Length = 24
Score = 29.6 bits (65), Expect = 9.1, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 88 VIDEYLERSKANKELNDQKRLAT 110
V ++YLE+SKAN ELND+K T
Sbjct: 2 VXEDYLEKSKANLELNDKKXXXT 24
>sp|A3CR42|ILVD_STRSV Dihydroxy-acid dehydratase OS=Streptococcus sanguinis (strain SK36)
GN=ilvD PE=3 SV=1
Length = 572
Score = 29.6 bits (65), Expect = 9.4, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGT 125
GVI + E + N L+D +LA G A+ VQ+GT
Sbjct: 46 GVISTWAENTPCNIHLHDLGKLAKEGIKAEGAWPVQYGT 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.126 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,504,367
Number of Sequences: 539616
Number of extensions: 1941303
Number of successful extensions: 4875
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4845
Number of HSP's gapped (non-prelim): 35
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)