Query 030795
Match_columns 171
No_of_seqs 30 out of 32
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 04:41:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00054 photosystem I reactio 100.0 5.1E-73 1.1E-77 446.8 9.1 136 34-171 1-138 (139)
2 PF05479 PsaN: Photosystem I r 100.0 5.5E-73 1.2E-77 446.4 -1.7 131 38-171 8-138 (138)
3 PLN00078 photosystem I reactio 99.7 1E-17 2.2E-22 130.7 2.6 72 52-130 27-99 (122)
4 KOG3381 Uncharacterized conser 80.5 0.59 1.3E-05 38.8 0.3 17 96-112 128-144 (161)
5 COG5133 Uncharacterized conser 69.0 2.1 4.5E-05 36.1 0.7 18 95-112 147-164 (181)
6 PF07172 GRP: Glycine rich pro 58.1 6.1 0.00013 29.4 1.4 13 94-106 32-44 (95)
7 PLN00064 photosystem II protei 45.9 29 0.00063 29.1 3.6 41 53-94 28-68 (166)
8 TIGR02811 formate_TAT formate 41.2 36 0.00078 23.9 3.1 15 56-70 6-20 (66)
9 PLN00042 photosystem II oxygen 41.2 38 0.00083 29.9 3.8 52 43-102 39-92 (260)
10 PF01425 Amidase: Amidase; In 41.1 22 0.00047 28.8 2.2 67 87-168 1-73 (441)
11 PF05757 PsbQ: Oxygen evolving 37.2 11 0.00024 31.6 0.0 26 41-70 15-40 (202)
12 PF03002 Somatostatin: Somatos 36.5 13 0.00029 21.4 0.2 6 165-170 8-13 (18)
13 PF10399 UCR_Fe-S_N: Ubiquitin 31.5 46 0.001 21.7 2.2 19 57-75 7-25 (41)
14 PF14107 DUF4280: Domain of un 31.3 19 0.00041 25.9 0.4 35 104-138 29-66 (108)
15 PF01160 Opiods_neuropep: Vert 29.0 23 0.00049 24.0 0.4 10 151-160 25-34 (48)
16 PF15240 Pro-rich: Proline-ric 28.5 35 0.00075 28.7 1.5 25 64-91 2-26 (179)
17 PF14285 DUF4367: Domain of un 28.3 78 0.0017 23.1 3.2 30 61-90 3-32 (168)
18 TIGR03044 PS_II_psb27 photosys 27.0 76 0.0017 25.7 3.2 32 63-97 11-42 (135)
19 PF12650 DUF3784: Domain of un 26.8 23 0.00051 25.0 0.2 25 85-109 19-43 (97)
20 TIGR03725 bact_YeaZ universal 25.4 46 0.001 26.2 1.7 45 88-149 40-91 (202)
21 PLN00092 photosystem I reactio 25.1 67 0.0015 26.4 2.5 8 40-47 33-40 (137)
22 PRK07474 sulfur oxidation prot 24.6 1.1E+02 0.0024 24.8 3.7 36 59-94 8-43 (154)
23 PLN00077 photosystem II reacti 24.5 59 0.0013 26.5 2.1 7 40-46 24-30 (128)
24 PF11022 DUF2611: Protein of u 24.1 1.4E+02 0.0031 21.7 3.8 16 86-101 54-69 (71)
25 PF03962 Mnd1: Mnd1 family; I 23.0 31 0.00067 28.0 0.3 20 147-171 39-59 (188)
26 PF12071 DUF3551: Protein of u 22.1 99 0.0022 22.6 2.7 17 122-139 41-57 (82)
27 PF12318 FAD-SLDH: Membrane bo 20.5 1.4E+02 0.003 23.9 3.5 15 84-98 34-48 (168)
28 PRK09133 hypothetical protein; 20.3 72 0.0016 27.7 2.0 22 65-86 12-33 (472)
29 TIGR02659 TTQ_MADH_Lt methylam 20.1 83 0.0018 26.9 2.2 34 58-91 21-54 (186)
30 PRK14139 heat shock protein Gr 20.1 44 0.00096 27.6 0.6 27 91-117 40-67 (185)
No 1
>PLN00054 photosystem I reaction center subunit N; Provisional
Probab=100.00 E-value=5.1e-73 Score=446.83 Aligned_cols=136 Identities=73% Similarity=1.079 Sum_probs=130.8
Q ss_pred CccccCCcceeeeccccc--cccccCcchhHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHhhhhhhhhhhhhhhcc
Q 030795 34 PAVHGHKMPVIRAQQVDV--SKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATS 111 (171)
Q Consensus 34 p~~~~~~lpvi~aq~~~~--~~~~~~~~gRR~al~~LAa~l~~tAa~a~a~~A~Agvi~dyL~KSkaNKelNDKkRlaTS 111 (171)
+.+++.++|+|++|++.. ....++++|||++|++||++||++| +.+++||||||+|||+|||+|||||||||||||
T Consensus 1 ~~~s~~~~~~ika~r~~~A~~~~~~~~~grraa~~~Laa~l~~~a--a~~~~AnAgv~~d~L~kS~aNKeLNDKKRlATS 78 (139)
T PLN00054 1 GAVSQMKMPVIKAQRVVRATGAVVDASDGRRAALVGLAATLFSTA--AAAASANAGVISDLLAKSKANKELNDKKRLATS 78 (139)
T ss_pred CccccccccccccccccccccchhccccchHHHHHHHHHHHHHHH--hcccccchhHHHHHHHHhhhhhhhhhHHhhhhc
Confidence 456788999999999884 7778899999999999999999998 889999999999999999999999999999999
Q ss_pred cccchhheeeeecccccCCCccchhhHhhcCCCcccccCccceecccccccccCcceecC
Q 030795 112 GANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171 (171)
Q Consensus 112 ~aNfaRaytv~fG~ckfP~Nf~GCq~lA~~k~V~FlsdDl~lECeGk~~~kCgSnvfwkw 171 (171)
++||+|+||||||+|+||||||||||||+||+||||||||+|||||+|+|+||||+||||
T Consensus 79 ~ANfaRa~TV~~G~C~FP~Nf~GCqdlA~~k~V~flsdDl~iECEGkd~~~CgS~~~~~~ 138 (139)
T PLN00054 79 GANFARSRTVQDGTCKFPENFTGCEDLAKQKKVPFISEDLALECEGKDKKKCGSKVFWKW 138 (139)
T ss_pred chhhhhheeeecccccCCcccccHHHHHhcCCCCccccccceeecCCccceecccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999
No 2
>PF05479 PsaN: Photosystem I reaction centre subunit N (PSAN or PSI-N); InterPro: IPR008796 This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins. The protein has no known function although it is localised in the thylakoid lumen []. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin.; GO: 0005516 calmodulin binding, 0015979 photosynthesis, 0009522 photosystem I, 0042651 thylakoid membrane; PDB: 2WSE_N 2WSC_N 2WSF_N 2O01_N.
Probab=100.00 E-value=5.5e-73 Score=446.36 Aligned_cols=131 Identities=73% Similarity=1.139 Sum_probs=69.0
Q ss_pred cCCcceeeeccccccccccCcchhHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHhhhhhhhhhhhhhhcccccchh
Q 030795 38 GHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFAR 117 (171)
Q Consensus 38 ~~~lpvi~aq~~~~~~~~~~~~gRR~al~~LAa~l~~tAa~a~a~~A~Agvi~dyL~KSkaNKelNDKkRlaTS~aNfaR 117 (171)
..++|+|++++... ...+++++||++|++|+++|++|| +.+++||+|||+|||+|||+||||||||||+|||+||+|
T Consensus 8 sa~~qai~~~ka~~-~~~~~~~~~Raall~Laa~l~~tA--a~a~~A~A~l~~dyL~KSkaNKelNDKkRlaTs~aNfaR 84 (138)
T PF05479_consen 8 SAKVQAIRAAKAKR-VVVRASDGRRAALLGLAAVLAATA--ASASSARAGLLEDYLEKSKANKELNDKKRLATSYANFAR 84 (138)
T ss_dssp ---------------------------------------------------SSSSS-SSHSSSSSTTTSS-TSSSSSSTS
T ss_pred hcccchhhhccCCC-cccccCccchHHHHHHHHHHHHHh--hcCcchhhHHHHHHHHHhHhhhhhhhHHHhhhhhhhhhh
Confidence 34889999998774 456778899999999999999887 678999999999999999999999999999999999999
Q ss_pred heeeeecccccCCCccchhhHhhcCCCcccccCccceecccccccccCcceecC
Q 030795 118 AYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171 (171)
Q Consensus 118 aytv~fG~ckfP~Nf~GCq~lA~~k~V~FlsdDl~lECeGk~~~kCgSnvfwkw 171 (171)
+||||||+|+||+|||||||||+||+||||||||+|||||||+|||||||||||
T Consensus 85 ~~tv~fg~c~fP~n~~gc~~la~~~~v~f~sdd~~lecegkd~~kc~s~~~~k~ 138 (138)
T PF05479_consen 85 AYTVQFGTCKFPENFTGCQDLAKQKKVPFLSDDLKLECEGKDKYKCGSNVFWKW 138 (138)
T ss_dssp GTT--TSTSSSSS-SSSSSSS-STT-TTSS--SSSSS-TTTSSS-SSSS-SS--
T ss_pred heeeecccccCCccchhhHHHHHcCCCceecccceeeecCccccccccceeecC
Confidence 999999999999999999999999999999999999999999999999999999
No 3
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=99.68 E-value=1e-17 Score=130.73 Aligned_cols=72 Identities=33% Similarity=0.503 Sum_probs=67.0
Q ss_pred cccccCcchhHHHHHHHHHHHHHhhhhc-cccccchhhHHHHHHHhhhhhhhhhhhhhhcccccchhheeeeecccccCC
Q 030795 52 SKESRGTDGRRAAMALLAVTLFTTATAA-ASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPE 130 (171)
Q Consensus 52 ~~~~~~~~gRR~al~~LAa~l~~tAa~a-~a~~A~Agvi~dyL~KSkaNKelNDKkRlaTS~aNfaRaytv~fG~ckfP~ 130 (171)
...+||+.+||++|++|.+ ||+|+ .++.++..+||+||+||++|||.|||+||+ ++|+|+|++||++.+++-
T Consensus 27 ~~a~rng~srr~llt~l~s----taaip~~~~~Sr~~liq~llkkSeeNKakndkERLD---dYYKRNykDYF~fveG~~ 99 (122)
T PLN00078 27 MLAQRNGISRRCLLTFLTS----TAAIPEAGSESRKALLQEYLKKSEENKEKNDKERLD---DYYKRNYKDYFGLIEGPA 99 (122)
T ss_pred HHHHhcchhHHHHHHHHHh----hccCCCCcCchHHHHHHHHHHHhHHhHHHhHHHHHH---HHHHHhHHHHHHHhcccc
Confidence 4578999999999999998 78888 788999999999999999999999999999 999999999999998874
No 4
>KOG3381 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.50 E-value=0.59 Score=38.83 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=13.5
Q ss_pred hhhhhhhhhhhhhhccc
Q 030795 96 SKANKELNDQKRLATSG 112 (171)
Q Consensus 96 SkaNKelNDKkRlaTS~ 112 (171)
..-||.||||+|.|..-
T Consensus 128 ~~vNKQLnDKERVaAA~ 144 (161)
T KOG3381|consen 128 EAVNKQLNDKERVAAAL 144 (161)
T ss_pred HHHHhhhccHHHHHHHh
Confidence 34699999999998443
No 5
>COG5133 Uncharacterized conserved protein [Function unknown]
Probab=68.95 E-value=2.1 Score=36.07 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=14.5
Q ss_pred Hhhhhhhhhhhhhhhccc
Q 030795 95 RSKANKELNDQKRLATSG 112 (171)
Q Consensus 95 KSkaNKelNDKkRlaTS~ 112 (171)
.+.-||.||||+|.|..-
T Consensus 147 e~qvNKQLnDKeRVaAAc 164 (181)
T COG5133 147 ERQVNKQLNDKERVAAAC 164 (181)
T ss_pred HHHHhhhhchHHHHHHhh
Confidence 356799999999998543
No 6
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=58.07 E-value=6.1 Score=29.42 Aligned_cols=13 Identities=31% Similarity=0.624 Sum_probs=7.5
Q ss_pred HHhhhhhhhhhhh
Q 030795 94 ERSKANKELNDQK 106 (171)
Q Consensus 94 ~KSkaNKelNDKk 106 (171)
++..+.++.+|.|
T Consensus 32 ~~~~~~~~v~~~~ 44 (95)
T PF07172_consen 32 EKEEEENEVQDDK 44 (95)
T ss_pred cccccCCCCCccc
Confidence 5555556666654
No 7
>PLN00064 photosystem II protein Psb27; Provisional
Probab=45.88 E-value=29 Score=29.14 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=23.5
Q ss_pred ccccCcchhHHHHHHHHHHHHHhhhhccccccchhhHHHHHH
Q 030795 53 KESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLE 94 (171)
Q Consensus 53 ~~~~~~~gRR~al~~LAa~l~~tAa~a~a~~A~Agvi~dyL~ 94 (171)
..+++..+||.+|.+.++++.... ..+..++.++-..||.+
T Consensus 28 ~~~~~~~~rr~~~~~~~~~~~~~~-~~~~~~a~a~~~g~Y~~ 68 (166)
T PLN00064 28 PPRRNHLLRREFLSLATTILTSAA-LLPVAPAFAASDEEYVK 68 (166)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHH-hccCcchhhccCCChHH
Confidence 344566799999987666544333 33344455555555544
No 8
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=41.24 E-value=36 Score=23.93 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=10.7
Q ss_pred cCcchhHHHHHHHHH
Q 030795 56 RGTDGRRAAMALLAV 70 (171)
Q Consensus 56 ~~~~gRR~al~~LAa 70 (171)
..+.+||-+|-+|+.
T Consensus 6 ~~~~sRR~Flk~lg~ 20 (66)
T TIGR02811 6 KADPSRRDLLKGLGV 20 (66)
T ss_pred cCCccHHHHHHHHHH
Confidence 445689998876555
No 9
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=41.16 E-value=38 Score=29.91 Aligned_cols=52 Identities=38% Similarity=0.390 Sum_probs=29.4
Q ss_pred eeeeccccccccccCcchhHHHHHHHHHHHHHhhhhccccccchhhHHH--HHHHhhhhhhh
Q 030795 43 VIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDE--YLERSKANKEL 102 (171)
Q Consensus 43 vi~aq~~~~~~~~~~~~gRR~al~~LAa~l~~tAa~a~a~~A~Agvi~d--yL~KSkaNKel 102 (171)
+.|+|... ....+||.+|++++.++... +...+|++..=|+ -.-|.|.++.-
T Consensus 39 ~~~~~~~~-----~~~~srr~~l~~~~ga~a~~---~~~~pa~aay~~~anvfg~~k~~~gF 92 (260)
T PLN00042 39 VCRAQEED-----NSAVSRRAALALLAGAAAAG---AKVSPANAAYGESANVFGKPKTNTGF 92 (260)
T ss_pred eeeccccc-----cccccHHHHHHHHHHHHHhh---cccCchhhhhcchhhccCCCCCCCCC
Confidence 55665332 23468999988888753322 5666777655443 23345544443
No 10
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=41.06 E-value=22 Score=28.78 Aligned_cols=67 Identities=24% Similarity=0.366 Sum_probs=43.1
Q ss_pred hhHHHHHHHhhh-hhhhh-----hhhhhhcccccchhheeeeecccccCCCccchhhHhhcCCCcccccCccceeccccc
Q 030795 87 GVIDEYLERSKA-NKELN-----DQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDK 160 (171)
Q Consensus 87 gvi~dyL~KSka-NKelN-----DKkRlaTS~aNfaRaytv~fG~ckfP~Nf~GCq~lA~~k~V~FlsdDl~lECeGk~~ 160 (171)
.|++.||++-++ |.++| +.++....-+...+.+. -|....| =.||||.-.|. +..+|..
T Consensus 1 e~~~~~~~ri~~~~~~~na~~~~~~~~a~~~A~~~d~~~~--~~~~~~p-----------L~Gip~~vKD~-~~~~g~~- 65 (441)
T PF01425_consen 1 ELVEAYLARIEAYNPELNAFVEVDFDEALAQARELDARRA--RGKPRGP-----------LHGIPISVKDN-IDVAGLP- 65 (441)
T ss_dssp HHHHHHHHHHHHHHHHH--EEEEEHHHHHHHHHHHHHHHH--TTSSSST-----------TTT-EEEEETT-BSBTTSB-
T ss_pred CHHHHHHHHHHHhCcccCEEEEECcHHHHHHHHHHHHHHh--hcCCCCC-----------CCCCceecccc-ccccccc-
Confidence 478999999887 99999 55554433344444443 5666666 25899988887 5677654
Q ss_pred ccccCcce
Q 030795 161 YKCGSNVF 168 (171)
Q Consensus 161 ~kCgSnvf 168 (171)
-.|||..|
T Consensus 66 tt~G~~~~ 73 (441)
T PF01425_consen 66 TTAGSPAL 73 (441)
T ss_dssp B-TTSGGG
T ss_pred cccccccc
Confidence 56777654
No 11
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=37.16 E-value=11 Score=31.63 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=0.0
Q ss_pred cceeeeccccccccccCcchhHHHHHHHHH
Q 030795 41 MPVIRAQQVDVSKESRGTDGRRAAMALLAV 70 (171)
Q Consensus 41 lpvi~aq~~~~~~~~~~~~gRR~al~~LAa 70 (171)
-+++|+|| .......+||++|.+|++
T Consensus 15 ~~~vra~~----~~~~~~~~RRa~l~~l~a 40 (202)
T PF05757_consen 15 GVVVRASQ----SPAQQQTSRRAVLGSLLA 40 (202)
T ss_dssp ------------------------------
T ss_pred cceecccc----CcccccccHHHHHHHHHH
Confidence 35688886 223345789999884443
No 12
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=36.49 E-value=13 Score=21.40 Aligned_cols=6 Identities=67% Similarity=1.575 Sum_probs=4.9
Q ss_pred Ccceec
Q 030795 165 SNVFWK 170 (171)
Q Consensus 165 Snvfwk 170 (171)
-|+|||
T Consensus 8 knffWK 13 (18)
T PF03002_consen 8 KNFFWK 13 (18)
T ss_pred cceeec
Confidence 489998
No 13
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=31.52 E-value=46 Score=21.73 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=10.2
Q ss_pred CcchhHHHHHHHHHHHHHh
Q 030795 57 GTDGRRAAMALLAVTLFTT 75 (171)
Q Consensus 57 ~~~gRR~al~~LAa~l~~t 75 (171)
...+||-.|.+.+++++..
T Consensus 7 ~~~~RRdFL~~at~~~gav 25 (41)
T PF10399_consen 7 VDPTRRDFLTIATSAVGAV 25 (41)
T ss_dssp ---HHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHH
Confidence 3467888776665555443
No 14
>PF14107 DUF4280: Domain of unknown function (DUF4280)
Probab=31.34 E-value=19 Score=25.88 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=26.8
Q ss_pred hhhhhhcccccchhheeeeecccccCCCccc---hhhH
Q 030795 104 DQKRLATSGANFARAYTVQFGTCKFPENFTG---CQDL 138 (171)
Q Consensus 104 DKkRlaTS~aNfaRaytv~fG~ckfP~Nf~G---Cq~l 138 (171)
+.|.++|..|+..=.---.||.|+.+.|... |.-.
T Consensus 29 ~~k~~at~~D~~~~~ni~~FG~C~~~~~~~~~~~C~p~ 66 (108)
T PF14107_consen 29 NGKPVATIKDKVPGVNIPPFGMCKSPKNPSVNSACKPA 66 (108)
T ss_pred CCEEEeECcCcCcccCCcccccccCCCCCCcCCcceeC
Confidence 3388899888877555568999999988765 7654
No 15
>PF01160 Opiods_neuropep: Vertebrate endogenous opioids neuropeptide; InterPro: IPR006024 Vertebrate endogenous opioid neuropeptides are released by post-translational proteolytic cleavage of precursor proteins. The precursors consist of the following components: a signal sequence that precedes a conserved region of about 50 residues; a variable-length region; and the sequence of the neuropeptide itself. Three types of precursor are known: preproenkephalin A (gene PENK), which is processed to produce 6 copies of Met-enkephalin, plus Leu-enkephalin; preproenkephalin B (gene PDYN), which is processed to produce neoendorphin, dynorphin, leumorphin, rimorphin and Leu-enkephalin; and prepronocipeptin (gene PNOC), whose processing produces nociceptin (orphanin FQ) and two other potential neuropeptides. Sequence analysis reveals that the conserved N-terminal region of the precursors contains 6 cysteines, which are probably involved in disulphide bond formation. It is speculated that this region might be important for neuropeptide processing [].; GO: 0007218 neuropeptide signaling pathway
Probab=28.96 E-value=23 Score=23.95 Aligned_cols=10 Identities=50% Similarity=0.820 Sum_probs=7.6
Q ss_pred ccceeccccc
Q 030795 151 LELECKGKDK 160 (171)
Q Consensus 151 l~lECeGk~~ 160 (171)
=-|||||+-.
T Consensus 25 C~LECEg~l~ 34 (48)
T PF01160_consen 25 CTLECEGKLS 34 (48)
T ss_pred heeeeCCCCC
Confidence 4689999854
No 16
>PF15240 Pro-rich: Proline-rich
Probab=28.49 E-value=35 Score=28.70 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhhhccccccchhhHHH
Q 030795 64 AMALLAVTLFTTATAAASSSANAGVIDE 91 (171)
Q Consensus 64 al~~LAa~l~~tAa~a~a~~A~Agvi~d 91 (171)
||+||.+||++- .+|-..+-+|..|
T Consensus 2 LlVLLSvALLAL---SSAQ~~dEdv~~e 26 (179)
T PF15240_consen 2 LLVLLSVALLAL---SSAQSTDEDVSQE 26 (179)
T ss_pred hhHHHHHHHHHh---hhccccccccccc
Confidence 677777767644 5666666666553
No 17
>PF14285 DUF4367: Domain of unknown function (DUF4367)
Probab=28.28 E-value=78 Score=23.06 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHhhhhccccccchhhHH
Q 030795 61 RRAAMALLAVTLFTTATAAASSSANAGVID 90 (171)
Q Consensus 61 RR~al~~LAa~l~~tAa~a~a~~A~Agvi~ 90 (171)
||.+++++|+.+++.++..++...+..+++
T Consensus 3 ~r~a~~~~a~~i~~~~~~~t~~a~~~~~~~ 32 (168)
T PF14285_consen 3 KRAAVAAAAVIILVFAASMTVQAVREKVYN 32 (168)
T ss_pred HHHHHHHHHHHHHHHhHhEEehHHhHHHHh
Confidence 566666655555544434444433455554
No 18
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=27.01 E-value=76 Score=25.73 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhhhccccccchhhHHHHHHHhh
Q 030795 63 AAMALLAVTLFTTATAAASSSANAGVIDEYLERSK 97 (171)
Q Consensus 63 ~al~~LAa~l~~tAa~a~a~~A~Agvi~dyL~KSk 97 (171)
++.++|..+|+.++ .++++..+|..+|.+.+.
T Consensus 11 ~lal~L~~~l~l~~---c~~~~~~~Ltg~Y~~DT~ 42 (135)
T TIGR03044 11 ALALVLGLCLLLTA---CSGAAKTRLTGDYVEDTL 42 (135)
T ss_pred HHHHHHHHHHHHhc---ccCCCcccccchHHHHHH
Confidence 35566666677663 455678899999987654
No 19
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=26.78 E-value=23 Score=25.01 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=22.2
Q ss_pred chhhHHHHHHHhhhhhhhhhhhhhh
Q 030795 85 NAGVIDEYLERSKANKELNDQKRLA 109 (171)
Q Consensus 85 ~Agvi~dyL~KSkaNKelNDKkRla 109 (171)
..-++..|=-.||+.||+=|+|+|.
T Consensus 19 ~~~LIaGyntms~eEk~~~D~~~l~ 43 (97)
T PF12650_consen 19 GYFLIAGYNTMSKEEKEKYDKKKLC 43 (97)
T ss_pred cccchhhcccCCHHHHHHhhHHHHH
Confidence 3468888999999999999999998
No 20
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=25.39 E-value=46 Score=26.25 Aligned_cols=45 Identities=29% Similarity=0.413 Sum_probs=31.4
Q ss_pred hHHHHHHHhhhhhhhhhhhhhhcccccchhheeeeecccccCCCccch-------hhHhhcCCCccccc
Q 030795 88 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGC-------QDLAKQKKVPFISD 149 (171)
Q Consensus 88 vi~dyL~KSkaNKelNDKkRlaTS~aNfaRaytv~fG~ckfP~Nf~GC-------q~lA~~k~V~Flsd 149 (171)
.|++.|++ +|-+++|=++ +....+|..|||- +-||...++|++.=
T Consensus 40 ~i~~~l~~--~~~~~~~i~~---------------iav~~GPGSfTGlRig~~~akgla~~~~~p~~~v 91 (202)
T TIGR03725 40 MIEELLAE--AGLSLQDLDA---------------IAVGVGPGSFTGLRIGLATAKGLALALGIPLVGV 91 (202)
T ss_pred HHHHHHHH--cCCCHHHCCE---------------EEEecCCChHHhHHHHHHHHHHHHHHhCCCEEec
Confidence 36777775 3455555444 4477899999995 56777888888753
No 21
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=25.12 E-value=67 Score=26.38 Aligned_cols=8 Identities=13% Similarity=0.517 Sum_probs=5.8
Q ss_pred Ccceeeec
Q 030795 40 KMPVIRAQ 47 (171)
Q Consensus 40 ~lpvi~aq 47 (171)
-||.++..
T Consensus 33 GLPam~~~ 40 (137)
T PLN00092 33 GLPAMAKK 40 (137)
T ss_pred CCchhccc
Confidence 56888765
No 22
>PRK07474 sulfur oxidation protein SoxY; Provisional
Probab=24.64 E-value=1.1e+02 Score=24.75 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=18.3
Q ss_pred chhHHHHHHHHHHHHHhhhhccccccchhhHHHHHH
Q 030795 59 DGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLE 94 (171)
Q Consensus 59 ~gRR~al~~LAa~l~~tAa~a~a~~A~Agvi~dyL~ 94 (171)
-+||.+|.+.++.+..++..+....+.+.-++|.++
T Consensus 8 ~~rr~~l~~~~~~~~~~~~~~~~~~a~~~~~~~a~~ 43 (154)
T PRK07474 8 LSRRQALALGGGALAAAVLPPRAAPARAAAVDAAIR 43 (154)
T ss_pred cCHHHHHHHHHHHHHHHhccccccccchhhHHHHHH
Confidence 578888877665544444322223444333344444
No 23
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=24.51 E-value=59 Score=26.45 Aligned_cols=7 Identities=43% Similarity=0.843 Sum_probs=5.5
Q ss_pred Ccceeee
Q 030795 40 KMPVIRA 46 (171)
Q Consensus 40 ~lpvi~a 46 (171)
-||.+++
T Consensus 24 GLP~l~~ 30 (128)
T PLN00077 24 GLPQLRA 30 (128)
T ss_pred Cchhhhc
Confidence 5698887
No 24
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=24.11 E-value=1.4e+02 Score=21.67 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=11.5
Q ss_pred hhhHHHHHHHhhhhhh
Q 030795 86 AGVIDEYLERSKANKE 101 (171)
Q Consensus 86 Agvi~dyL~KSkaNKe 101 (171)
...|+|||++..+-++
T Consensus 54 E~fIk~fl~~~~~e~~ 69 (71)
T PF11022_consen 54 EKFIKEFLKEHEKEEK 69 (71)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4689999988765433
No 25
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.95 E-value=31 Score=27.96 Aligned_cols=20 Identities=35% Similarity=0.733 Sum_probs=12.5
Q ss_pred cccCccceeccccccccc-CcceecC
Q 030795 147 ISDDLELECKGKDKYKCG-SNVFWKW 171 (171)
Q Consensus 147 lsdDl~lECeGk~~~kCg-Snvfwkw 171 (171)
|-||=-|.|| ||| ||+||-+
T Consensus 39 LvDDglV~~E-----KiGssn~YWsF 59 (188)
T PF03962_consen 39 LVDDGLVHVE-----KIGSSNYYWSF 59 (188)
T ss_pred Hhccccchhh-----hccCeeEEEec
Confidence 4455445544 787 5999964
No 26
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=22.10 E-value=99 Score=22.61 Aligned_cols=17 Identities=24% Similarity=0.700 Sum_probs=9.0
Q ss_pred eecccccCCCccchhhHh
Q 030795 122 QFGTCKFPENFTGCQDLA 139 (171)
Q Consensus 122 ~fG~ckfP~Nf~GCq~lA 139 (171)
+.|.|.|+ .|--|+-.|
T Consensus 41 ~~g~C~y~-t~~QC~asA 57 (82)
T PF12071_consen 41 YPGDCSYS-TYEQCRASA 57 (82)
T ss_pred CCccCCcC-CHHHHHHHh
Confidence 33667665 355555444
No 27
>PF12318 FAD-SLDH: Membrane bound FAD containing D-sorbitol dehydrogenase ; InterPro: IPR024651 There are two types of membrane-bound D-sorbitol dehydrogenase: PQQ-SLDH (pyrroloquinoline quinone sorbitol dehydrogenase) and FAD-SLDH (FAD-containing sorbitol dehydrogenase). FAD-SLDH is involved in oxidation of D-sorbitol to L-sorbose and consists of a large, small and cytochrome c subunits []. This entry represents the small subunit of the FAD-containing D-sorbitol dehydrogenase. This family of proteins is found in bacteria and contains a conserved ALM sequence motif. The role of the small subunit is unknown. Gluconate dehydrogenases and fructose dehydrogenases are also included in this entry.
Probab=20.49 E-value=1.4e+02 Score=23.88 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=10.5
Q ss_pred cchhhHHHHHHHhhh
Q 030795 84 ANAGVIDEYLERSKA 98 (171)
Q Consensus 84 A~Agvi~dyL~KSka 98 (171)
+...-++++|.=|..
T Consensus 34 ~~~~~~~~Fm~lS~~ 48 (168)
T PF12318_consen 34 ASSADLDDFMALSQL 48 (168)
T ss_pred CCcccHHHHHHHHHH
Confidence 344557899988865
No 28
>PRK09133 hypothetical protein; Provisional
Probab=20.35 E-value=72 Score=27.74 Aligned_cols=22 Identities=45% Similarity=0.442 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhhhccccccch
Q 030795 65 MALLAVTLFTTATAAASSSANA 86 (171)
Q Consensus 65 l~~LAa~l~~tAa~a~a~~A~A 86 (171)
|.+|+++..+.|+++.++.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~ 33 (472)
T PRK09133 12 LALLAAAAATGAAAAAAPAAPT 33 (472)
T ss_pred HHHhhccchhhhhhhcCCCCcc
Confidence 3444444444444444444443
No 29
>TIGR02659 TTQ_MADH_Lt methylamine dehydrogenase light chain. This family consists of the light chain of methylamine dehydrogenase light chain, a periplasmic enzyme. This subunit contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from Trp-114 and Trp-165 of the precursor, numbered according to the sequence from Paracoccus denitrificans. The enzyme forms a complex with the type I blue copper protein amicyanin and cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=20.13 E-value=83 Score=26.87 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=28.2
Q ss_pred cchhHHHHHHHHHHHHHhhhhccccccchhhHHH
Q 030795 58 TDGRRAAMALLAVTLFTTATAAASSSANAGVIDE 91 (171)
Q Consensus 58 ~~gRR~al~~LAa~l~~tAa~a~a~~A~Agvi~d 91 (171)
..+||.+|.-|..+|..+++++.-+.+|++-..+
T Consensus 21 ~tsRRs~l~~lG~~l~g~a~~PlLPv~R~~~~~~ 54 (186)
T TIGR02659 21 KTSRRGFIGRLGTALAGSALVPLLPVDRRGRVSR 54 (186)
T ss_pred ccchHHHHHHHHHHHhhhhhccccccchhhcccc
Confidence 4689999999999888888888888888876543
No 30
>PRK14139 heat shock protein GrpE; Provisional
Probab=20.08 E-value=44 Score=27.63 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=12.5
Q ss_pred HHHHHhhhhhhhhhh-hhhhcccccchh
Q 030795 91 EYLERSKANKELNDQ-KRLATSGANFAR 117 (171)
Q Consensus 91 dyL~KSkaNKelNDK-kRlaTS~aNfaR 117 (171)
++-+.-++.+|+.|+ .|+..-..||.|
T Consensus 40 ~l~~le~e~~elkd~~lR~~AefeN~rK 67 (185)
T PRK14139 40 ELAEAEAKAAELQDSFLRAKAETENVRR 67 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455555444 355544455544
Done!