Query 030795
Match_columns 171
No_of_seqs 30 out of 32
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 07:00:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_N PSAN, PSI-N, photosyste 100.0 1.4E-93 4.7E-98 575.2 -3.0 167 1-171 1-170 (170)
2 3lw5_N Photosystem I-N subunit 100.0 7.7E-62 2.6E-66 357.8 -2.7 85 87-171 1-85 (85)
3 3ux2_A MIP18 family protein FA 87.3 0.11 3.9E-06 39.7 -0.0 14 97-110 101-114 (130)
4 2dii_A TFIIH basal transcripti 20.4 12 0.00041 25.7 -1.2 27 95-121 9-35 (61)
5 1gr0_A Inositol-3-phosphate sy 16.9 41 0.0014 29.5 1.0 24 129-152 173-199 (367)
6 3drq_C GP41 peptide epitope; H 15.8 83 0.0028 18.8 1.9 23 87-109 4-26 (35)
7 2be6_D Voltage-dependent L-typ 14.4 86 0.0029 19.9 1.7 15 88-102 16-30 (37)
8 4g9e_A AHL-lactonase, alpha/be 12.8 71 0.0024 21.5 1.1 24 83-106 256-279 (279)
9 2f3y_B Voltage-dependent L-typ 12.1 1.1E+02 0.0038 18.2 1.6 16 88-103 7-22 (26)
10 1bpo_A Protein (clathrin); cla 11.2 51 0.0018 30.2 -0.0 5 167-171 109-113 (494)
No 1
>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N*
Probab=100.00 E-value=1.4e-93 Score=575.23 Aligned_cols=167 Identities=73% Similarity=1.192 Sum_probs=84.9
Q ss_pred CccccccccccceecccCCCCcccccceeeccC---CccccCCcceeeeccccccccccCcchhHHHHHHHHHHHHHhhh
Q 030795 1 MAAMNSSVLACNYAISGSAGSSELNAKIVSVST---PAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTAT 77 (171)
Q Consensus 1 maamnssvlac~yaisg~~~~~el~~k~~s~~s---p~~~~~~lpvi~aq~~~~~~~~~~~~gRR~al~~LAa~l~~tAa 77 (171)
||+|||||||||||||| ++|||+|++|||| |.++|+|||+||+||+.. .+....++||++|++||++|+++|+
T Consensus 1 ma~mnssvlac~yaisg---~sel~~k~~s~~s~~~~~~~~~klp~~ka~~~~~-~~~~~~~~rRaAl~~LaA~l~~~aa 76 (170)
T 2wsc_N 1 MSAMNSTVLACNYARSG---CSDLNAKLTSMPSVASPQLSALKLPLIKAHQAKV-TESKSDQGRRSALVYLAATLFTAAA 76 (170)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccccchhhhhhhhcC---chhhhhhhccCcccccccccccccCcceeeeeec-ccccccchhHHHHHHHHHHHHHHhh
Confidence 99999999999999999 7999999999999 889999999999999774 4445568999999999999999998
Q ss_pred hccccccchhhHHHHHHHhhhhhhhhhhhhhhcccccchhheeeeecccccCCCccchhhHhhcCCCcccccCccceecc
Q 030795 78 AAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKG 157 (171)
Q Consensus 78 ~a~a~~A~Agvi~dyL~KSkaNKelNDKkRlaTS~aNfaRaytv~fG~ckfP~Nf~GCq~lA~~k~V~FlsdDl~lECeG 157 (171)
++++++||||||+|||+||++|||||||||||||++||+|+||||||+|+||||||||||||+||+||||||||+|||||
T Consensus 77 ~~~~~sA~Agv~~d~L~kS~aNKeLNDKKRlATS~ANfaRa~TV~~GtCkFP~Nf~GCqdlAk~k~V~FlsdDl~lECEG 156 (170)
T 2wsc_N 77 AASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEG 156 (170)
T ss_dssp ---------CCCCSCSCSSCSCSSSCCCSSCCSSSSSSCSCTTCCCSCSSCCSCCSCSSSCCCTTCTTSSCCSCCCSCTT
T ss_pred cccccccccchHHHHHHHhhhhhhhhhhHhhhhcccchhheeeeecccccCCccccchHHHHhcCCCceecccceeeecc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcceecC
Q 030795 158 KDKYKCGSNVFWKW 171 (171)
Q Consensus 158 k~~~kCgSnvfwkw 171 (171)
||+|||||||||||
T Consensus 157 kd~~kCgSnvfwkw 170 (170)
T 2wsc_N 157 KDKYKCGSNVFWKW 170 (170)
T ss_dssp CCCCCSSCSCCCCC
T ss_pred ccCccccccceecC
Confidence 99999999999999
No 2
>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N*
Probab=100.00 E-value=7.7e-62 Score=357.78 Aligned_cols=85 Identities=88% Similarity=1.533 Sum_probs=84.3
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhcccccchhheeeeecccccCCCccchhhHhhcCCCcccccCccceecccccccccCc
Q 030795 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSN 166 (171)
Q Consensus 87 gvi~dyL~KSkaNKelNDKkRlaTS~aNfaRaytv~fG~ckfP~Nf~GCq~lA~~k~V~FlsdDl~lECeGk~~~kCgSn 166 (171)
|||+|||+||++|||||||||||||+|||+|+|||+||+|+||+|||||||+|++++||||||||+|||||||+||||||
T Consensus 1 gv~~dllaks~aNKeLnDkKRlaTS~ANfaRs~TV~~G~C~FP~Nf~GCq~~a~~~~V~FlsdD~~lECeGkd~~kcgsn 80 (85)
T 3lw5_N 1 GVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGKDKYKCGSN 80 (85)
T ss_dssp CCCCSCSCSSCCCSTTCCCSSCCSSSSSSTTTSSCCCSCSSCCSCCSCSSSCCCTTBTTBSCCSCCCSCCSCCCCCSSTT
T ss_pred CcHHHHHHHhhhhhhhhhHHHhhhcccchhheeEeecccccCCccccchHHHHhcCCCceecccceeeecCccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecC
Q 030795 167 VFWKW 171 (171)
Q Consensus 167 vfwkw 171 (171)
|||||
T Consensus 81 vfwkw 85 (85)
T 3lw5_N 81 VFWKW 85 (85)
T ss_dssp TCCCC
T ss_pred ceecC
Confidence 99999
No 3
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=87.25 E-value=0.11 Score=39.72 Aligned_cols=14 Identities=43% Similarity=0.760 Sum_probs=12.3
Q ss_pred hhhhhhhhhhhhhc
Q 030795 97 KANKELNDQKRLAT 110 (171)
Q Consensus 97 kaNKelNDKkRlaT 110 (171)
.-||.||||+|.|.
T Consensus 101 ~vnKQl~DKERvaA 114 (130)
T 3ux2_A 101 DINKQINDKERVAA 114 (130)
T ss_dssp CHHHHHHCHHHHHH
T ss_pred HHHHhhhhHHHHHH
Confidence 46999999999984
No 4
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=20.45 E-value=12 Score=25.72 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=22.5
Q ss_pred Hhhhhhhhhhhhhhhcccccchhheee
Q 030795 95 RSKANKELNDQKRLATSGANFARAYTV 121 (171)
Q Consensus 95 KSkaNKelNDKkRlaTS~aNfaRaytv 121 (171)
|-|+||||..|+||..+..+..+-|+.
T Consensus 9 k~k~n~ELe~k~rlL~eN~~L~qLyk~ 35 (61)
T 2dii_A 9 KRKANKELEEKNRMLQEDPVLFQLYKD 35 (61)
T ss_dssp CCCSCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHhccHhHHHHHHHHHhCHHHHHHHHH
Confidence 467899999999999888888777763
No 5
>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3
Probab=16.91 E-value=41 Score=29.50 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.6
Q ss_pred CCCcc---chhhHhhcCCCcccccCcc
Q 030795 129 PENFT---GCQDLAKQKKVPFISDDLE 152 (171)
Q Consensus 129 P~Nf~---GCq~lA~~k~V~FlsdDl~ 152 (171)
|.+.+ +.++++++++||.+-||++
T Consensus 173 P~~~~~~P~~~el~~~~g~pi~GdD~K 199 (367)
T 1gr0_A 173 PVFIASDPVWAKKFTDARVPIVGDDIK 199 (367)
T ss_dssp SCCSTTSHHHHHHHHHHTCEEEESSBC
T ss_pred CccccCCHHHHHHHHHcCCCEeccccc
Confidence 66666 8999999999999999987
No 6
>3drq_C GP41 peptide epitope; HIV-1, 2F5, NMAB, immune system; 2.00A {Homo sapiens} PDB: 3d0l_C 3drt_C 3egs_C
Probab=15.76 E-value=83 Score=18.82 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=18.9
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhh
Q 030795 87 GVIDEYLERSKANKELNDQKRLA 109 (171)
Q Consensus 87 gvi~dyL~KSkaNKelNDKkRla 109 (171)
+.|-.+|++|..-.|.|.|+=|.
T Consensus 4 ~~Iy~lLe~sq~qqekNek~Ll~ 26 (35)
T 3drq_C 4 ALFLGFLGAAGSKKXKNEQELLE 26 (35)
T ss_pred hHHHHHHHHHHhhHHhhHHHHHH
Confidence 56888999999999999886543
No 7
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=14.42 E-value=86 Score=19.95 Aligned_cols=15 Identities=40% Similarity=0.638 Sum_probs=13.2
Q ss_pred hHHHHHHHhhhhhhh
Q 030795 88 VIDEYLERSKANKEL 102 (171)
Q Consensus 88 vi~dyL~KSkaNKel 102 (171)
|||||..|-|.-||.
T Consensus 16 LIQdyFRkfkkrke~ 30 (37)
T 2be6_D 16 LIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 799999998888876
No 8
>4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A
Probab=12.79 E-value=71 Score=21.55 Aligned_cols=24 Identities=0% Similarity=0.115 Sum_probs=15.7
Q ss_pred ccchhhHHHHHHHhhhhhhhhhhh
Q 030795 83 SANAGVIDEYLERSKANKELNDQK 106 (171)
Q Consensus 83 ~A~Agvi~dyL~KSkaNKelNDKk 106 (171)
..-+..|.++|++.+.+++-|+|+
T Consensus 256 ~~~~~~i~~fl~~~~~~~~~~~~~ 279 (279)
T 4g9e_A 256 AEFDAYLARFIRDCTQLEHHHHHH 279 (279)
T ss_dssp HHHHHHHHHHHHHHHSSCCCC---
T ss_pred HHHHHHHHHHHHHhhhhhhhhccC
Confidence 344567888998888887777653
No 9
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=12.05 E-value=1.1e+02 Score=18.19 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=13.1
Q ss_pred hHHHHHHHhhhhhhhh
Q 030795 88 VIDEYLERSKANKELN 103 (171)
Q Consensus 88 vi~dyL~KSkaNKelN 103 (171)
||+||..|-|.-||..
T Consensus 7 LIqdyfRkfkkrke~~ 22 (26)
T 2f3y_B 7 LIQEYFRKFKKRKEQX 22 (26)
T ss_pred hHHHHHHHHHHhHHhh
Confidence 7999999988877753
No 10
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=11.23 E-value=51 Score=30.15 Aligned_cols=5 Identities=80% Similarity=2.567 Sum_probs=0.0
Q ss_pred ceecC
Q 030795 167 VFWKW 171 (171)
Q Consensus 167 vfwkw 171 (171)
|||||
T Consensus 109 vfWkW 113 (494)
T 1bpo_A 109 TFWKW 113 (494)
T ss_dssp CEEEE
T ss_pred eEEEe
Done!