BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030796
         (171 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q60492|SGMR1_CAVPO Sigma non-opioid intracellular receptor 1 OS=Cavia porcellus
           GN=SIGMAR1 PE=1 SV=1
          Length = 223

 Score = 31.2 bits (69), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 46  RWSCGKVWYWVKLAFFLTSVGLLAAVFIKWVGP---FFMDKEVIPIINWETTTFSTPVLA 102
           +W+ G+ W WV  A FL +V +L  +   W+G     F  +E+  +             +
Sbjct: 2   QWAVGRRWLWV--ALFLAAVAVLTQIVWLWLGTQNFVFQREEIAQLARQYAGLDHELAFS 59

Query: 103 VLVFASVALFPTLLLPSSPSMWV 125
            L+     L P  +LP     WV
Sbjct: 60  KLIVELRRLHPVHVLPDEELQWV 82


>sp|O14975|S27A2_HUMAN Very long-chain acyl-CoA synthetase OS=Homo sapiens GN=SLC27A2 PE=1
           SV=2
          Length = 620

 Score = 30.4 bits (67), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 13/95 (13%)

Query: 80  FMDK------EVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYG 133
           F+DK      E IP       TFSTP L +    +  L P   + +   +W     +G G
Sbjct: 194 FLDKVDEVSTEPIPESWRSEVTFSTPALYIYTSGTTGL-PKAAMITHQRIW-----YGTG 247

Query: 134 FGFLLIMSAVAV-GISLPYFIGSHFLHRIQVCIIA 167
             F+  + A  V  I+LP++  +  L  I  CI+A
Sbjct: 248 LTFVSGLKADDVIYITLPFYHSAALLIGIHGCIVA 282


>sp|Q6BQJ1|TVP38_DEBHA Golgi apparatus membrane protein TVP38 OS=Debaryomyces hansenii
           (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
           IGC 2968) GN=TVP38 PE=3 SV=1
          Length = 383

 Score = 30.4 bits (67), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 91  WETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLP 150
           W    F   +L  LVF  +  FP LL  S+ SM +AGM +G+  G++L+  A   G    
Sbjct: 92  WHGLKFGQGLLFTLVF--MVGFPPLLGFSALSM-LAGMVYGFVHGWILLACASISGSFCS 148

Query: 151 YFIGSHFLH 159
           + +  + LH
Sbjct: 149 FLVFRYLLH 157


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.143    0.460 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,172,106
Number of Sequences: 539616
Number of extensions: 3043454
Number of successful extensions: 9707
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 9698
Number of HSP's gapped (non-prelim): 25
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)