Query 030796
Match_columns 171
No_of_seqs 44 out of 46
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 04:42:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09335 SNARE_assoc: SNARE as 98.2 3.5E-06 7.5E-11 60.5 5.2 49 117-165 1-50 (123)
2 COG0398 Uncharacterized conser 97.8 6E-05 1.3E-09 63.1 7.4 93 68-162 18-112 (223)
3 PRK10847 hypothetical protein; 95.3 0.028 6.1E-07 46.3 4.7 61 101-161 33-100 (219)
4 COG0586 DedA Uncharacterized m 92.7 0.13 2.9E-06 42.2 3.7 66 95-160 14-84 (208)
5 KOG3140 Predicted membrane pro 80.0 0.6 1.3E-05 41.2 0.2 60 106-168 101-161 (275)
6 PF09335 SNARE_assoc: SNARE as 71.9 15 0.00032 26.1 5.6 48 121-169 2-50 (123)
7 TIGR02121 Na_Pro_sym sodium/pr 67.8 39 0.00086 30.6 8.6 67 97-170 35-115 (487)
8 PRK01844 hypothetical protein; 58.4 19 0.00041 26.7 4.0 27 132-158 3-30 (72)
9 TIGR02711 symport_actP cation/ 55.5 27 0.00059 32.5 5.5 71 97-170 66-141 (549)
10 PF02592 DUF165: Uncharacteriz 51.0 34 0.00074 26.5 4.6 53 111-169 44-96 (145)
11 PRK00523 hypothetical protein; 50.3 30 0.00066 25.6 3.9 26 133-158 5-31 (72)
12 PF02674 Colicin_V: Colicin V 49.4 55 0.0012 24.3 5.3 44 125-169 10-53 (146)
13 PF11808 DUF3329: Domain of un 48.2 40 0.00086 24.6 4.3 37 125-168 21-58 (90)
14 PF07178 TraL: TraL protein; 47.1 21 0.00045 26.2 2.7 40 125-166 27-66 (95)
15 COG2945 Predicted hydrolase of 44.9 14 0.0003 32.2 1.7 25 117-141 99-123 (210)
16 PRK12488 acetate permease; Pro 44.1 50 0.0011 30.8 5.3 49 122-170 88-141 (549)
17 PF14004 DUF4227: Protein of u 43.4 44 0.00095 24.4 3.9 26 50-75 1-26 (71)
18 PF01102 Glycophorin_A: Glycop 42.5 33 0.00071 27.2 3.4 17 125-141 66-82 (122)
19 TIGR02359 thiW thiW protein. L 40.1 80 0.0017 25.8 5.4 51 118-168 33-88 (160)
20 PF08006 DUF1700: Protein of u 38.9 57 0.0012 25.8 4.2 58 111-169 119-179 (181)
21 PF02447 GntP_permease: GntP f 38.9 36 0.00079 31.7 3.6 81 76-159 109-195 (441)
22 PF10507 DUF2453: Protein of u 38.3 70 0.0015 25.3 4.6 45 122-167 17-65 (111)
23 TIGR03648 Na_symport_lg probab 36.8 78 0.0017 29.4 5.4 48 123-170 54-106 (552)
24 PF04246 RseC_MucC: Positive r 36.3 78 0.0017 24.0 4.5 38 125-162 83-122 (135)
25 PF05915 DUF872: Eukaryotic pr 36.3 68 0.0015 24.9 4.2 49 56-113 41-89 (115)
26 TIGR02831 spo_II_M stage II sp 36.0 59 0.0013 26.8 4.0 33 122-154 79-113 (200)
27 PRK09395 actP acetate permease 35.7 78 0.0017 29.4 5.2 50 121-170 89-143 (551)
28 TIGR00813 sss transporter, SSS 34.4 73 0.0016 27.8 4.6 50 121-170 23-77 (407)
29 COG1238 Predicted membrane pro 34.4 25 0.00054 28.8 1.6 67 94-165 15-85 (161)
30 PF14012 DUF4229: Protein of u 33.9 1.4E+02 0.0031 21.1 5.2 33 137-169 34-66 (69)
31 PF01944 DUF95: Integral membr 33.6 66 0.0014 24.5 3.7 20 117-136 71-90 (173)
32 PRK15419 proline:sodium sympor 32.8 96 0.0021 28.4 5.2 45 126-170 65-119 (502)
33 PF14494 DUF4436: Domain of un 32.7 2E+02 0.0043 25.2 6.9 50 82-149 196-248 (256)
34 PF03672 UPF0154: Uncharacteri 32.2 52 0.0011 23.8 2.7 23 137-159 1-24 (64)
35 PRK03612 spermidine synthase; 32.1 68 0.0015 30.0 4.2 22 135-156 114-135 (521)
36 PF07960 CBP4: CBP4; InterPro 31.5 12 0.00027 30.1 -0.6 27 53-79 6-32 (128)
37 COG1280 RhtB Putative threonin 31.4 1.3E+02 0.0029 24.5 5.4 33 109-141 132-164 (208)
38 PRK13872 conjugal transfer pro 31.0 51 0.0011 27.4 2.9 33 54-89 40-72 (228)
39 KOG2262 Sexual differentiation 30.2 78 0.0017 32.2 4.5 21 127-147 175-195 (761)
40 PF06695 Sm_multidrug_ex: Puta 29.5 1E+02 0.0022 23.7 4.1 32 138-169 18-49 (121)
41 COG0785 CcdA Cytochrome c biog 29.1 88 0.0019 26.5 4.1 32 137-168 165-200 (220)
42 KOG0662 Cyclin-dependent kinas 28.8 28 0.00062 31.0 1.1 40 92-131 147-193 (292)
43 PRK15003 cytochrome d ubiquino 28.5 97 0.0021 28.7 4.5 55 106-162 305-367 (379)
44 cd02434 Nodulin-21_like_3 Nodu 27.2 59 0.0013 27.4 2.7 22 136-157 203-224 (225)
45 PRK10520 rhtB homoserine/homos 27.2 1.8E+02 0.0039 23.1 5.4 24 95-121 119-142 (205)
46 TIGR03017 EpsF chain length de 26.7 1.1E+02 0.0025 26.9 4.5 24 80-104 420-443 (444)
47 PF13807 GNVR: G-rich domain o 26.4 70 0.0015 22.4 2.6 32 107-140 44-78 (82)
48 PF12730 ABC2_membrane_4: ABC- 26.2 1.1E+02 0.0025 22.2 3.7 24 47-70 86-109 (232)
49 COG2995 PqiA Uncharacterized p 25.7 55 0.0012 31.1 2.5 122 26-165 14-153 (418)
50 PF07155 ECF-ribofla_trS: ECF- 25.6 2.5E+02 0.0053 21.6 5.7 29 118-146 37-65 (169)
51 PF14138 COX16: Cytochrome c o 24.9 19 0.0004 26.4 -0.6 17 96-112 3-19 (80)
52 PF02683 DsbD: Cytochrome C bi 23.3 4E+02 0.0086 21.4 8.8 24 139-162 158-181 (211)
53 PF04116 FA_hydroxylase: Fatty 23.2 36 0.00077 23.7 0.6 42 97-138 46-87 (114)
54 PF06341 DUF1056: Protein of u 22.8 2.7E+02 0.0059 20.2 5.0 38 121-158 16-53 (63)
55 PRK13717 conjugal transfer pro 22.2 1.5E+02 0.0032 24.2 4.0 35 45-79 10-46 (128)
56 COG1289 Predicted membrane pro 22.0 2.5E+02 0.0053 26.9 6.0 59 97-162 449-507 (674)
57 COG1294 AppB Cytochrome bd-typ 21.8 2.4E+02 0.0052 25.9 5.7 57 105-162 280-339 (346)
58 TIGR00909 2A0306 amino acid tr 21.6 1.8E+02 0.004 25.1 4.7 28 82-111 310-340 (429)
59 TIGR03428 ureacarb_perm permea 21.0 78 0.0017 28.3 2.4 71 82-164 329-404 (475)
60 PRK01766 multidrug efflux prot 20.8 1E+02 0.0023 26.8 3.1 48 121-168 396-445 (456)
61 PRK10862 SoxR reducing system 20.7 1.6E+02 0.0035 23.5 3.9 39 125-163 90-130 (154)
62 PRK15028 cytochrome bd-II oxid 20.5 49 0.0011 30.4 1.1 54 104-163 302-367 (378)
No 1
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=98.18 E-value=3.5e-06 Score=60.45 Aligned_cols=49 Identities=31% Similarity=0.533 Sum_probs=44.0
Q ss_pred cCCChhHHHHhhHhhhhhHHHHHHHHhhhhchhhHHHHHHhH-HHHHHHH
Q 030796 117 LPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFL-HRIQVCI 165 (171)
Q Consensus 117 lPSsPsMWlAGm~FGYg~GFLiIm~g~~IGmsLPyfIG~lF~-~rI~~WL 165 (171)
+|+++.+..+|..||.+.|+++...|+++|-.+.|++|+.++ ++.++.+
T Consensus 1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~ 50 (123)
T PF09335_consen 1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKL 50 (123)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 699999999999999999999999999999999999999887 4444444
No 2
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=6e-05 Score=63.14 Aligned_cols=93 Identities=14% Similarity=0.253 Sum_probs=64.3
Q ss_pred HHHHHHHhhcceecccchhhhhhhhhhccCcceeehh-hhhhhcccceeccCCChhHHHHhhHhhhhhHHHHHHHHhhhh
Q 030796 68 LAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVL-VFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVG 146 (171)
Q Consensus 68 l~~v~~kW~~P~~~~KvliPim~Wea~tF~~pvla~v-l~aS~AlFP~~LlPSsPsMWlAGm~FGYg~GFLiIm~g~~IG 146 (171)
+...+..+...+...-..--+.+|- ++.|. -.+++ +++-++...+..+|.++..-.+|.+||-..|+++.+.|+++|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~~i-~~~g~-~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~g 95 (223)
T COG0398 18 GVIIGIIYLGLLVLLLDPETLREWI-QAYGA-LGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAG 95 (223)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHH-HHcCc-hHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344444544444444444556665 33332 22233 444555566678899999999999999999999999999999
Q ss_pred chhhHHHHH-HhHHHHH
Q 030796 147 ISLPYFIGS-HFLHRIQ 162 (171)
Q Consensus 147 msLPyfIG~-lF~~rI~ 162 (171)
-.+.|++++ +.|++.+
T Consensus 96 s~~~Fll~R~~gr~~~~ 112 (223)
T COG0398 96 STLAFLLARYLGRDWVL 112 (223)
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 999999999 4444443
No 3
>PRK10847 hypothetical protein; Provisional
Probab=95.34 E-value=0.028 Score=46.28 Aligned_cols=61 Identities=28% Similarity=0.444 Sum_probs=46.2
Q ss_pred eehhhhhhhcccceeccCCChhHHHHhhHhh-------hhhHHHHHHHHhhhhchhhHHHHHHhHHHH
Q 030796 101 LAVLVFASVALFPTLLLPSSPSMWVAGMTFG-------YGFGFLLIMSAVAVGISLPYFIGSHFLHRI 161 (171)
Q Consensus 101 la~vl~aS~AlFP~~LlPSsPsMWlAGm~FG-------Yg~GFLiIm~g~~IGmsLPyfIG~lF~~rI 161 (171)
+.++.+..-.+.+...+|+...+-++|...+ +...++..+.|+.+|-.+-|++|+.+.+|+
T Consensus 33 lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~G~~~ 100 (219)
T PRK10847 33 LFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLFGEKL 100 (219)
T ss_pred HHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 3444444444456677899999999998866 335688889999999999999999875443
No 4
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=92.75 E-value=0.13 Score=42.19 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=54.0
Q ss_pred ccCcceeehhhhhhhcccceeccCCChhHHHHhhHhhhh-----hHHHHHHHHhhhhchhhHHHHHHhHHH
Q 030796 95 TFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYG-----FGFLLIMSAVAVGISLPYFIGSHFLHR 160 (171)
Q Consensus 95 tF~~pvla~vl~aS~AlFP~~LlPSsPsMWlAGm~FGYg-----~GFLiIm~g~~IGmsLPyfIG~lF~~r 160 (171)
.++-+.+.++.+.=..++....+|+-.-|-+||+.=+-+ .-++..+.|+.+|..+-|++|+.+.++
T Consensus 14 ~~~~~~~f~~~f~e~~l~~~~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~ 84 (208)
T COG0586 14 SLGYLGVFLILFLESGLLVGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRK 84 (208)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHH
Confidence 456666677777777888889999999999999985544 667778889999999999999988633
No 5
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=80.03 E-value=0.6 Score=41.19 Aligned_cols=60 Identities=27% Similarity=0.365 Sum_probs=48.0
Q ss_pred hhhhcccceeccC-CChhHHHHhhHhhhhhHHHHHHHHhhhhchhhHHHHHHhHHHHHHHHHhh
Q 030796 106 FASVALFPTLLLP-SSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQVCIIAK 168 (171)
Q Consensus 106 ~aS~AlFP~~LlP-SsPsMWlAGm~FGYg~GFLiIm~g~~IGmsLPyfIG~lF~~rI~~WL~~~ 168 (171)
+|....-=++-+| |..-.-.||..||-+-|.+++...++.|.++-|++.++|. |.|+.+.
T Consensus 101 ~~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~---r~~v~~l 161 (275)
T KOG3140|consen 101 IAAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFG---RPLVLKL 161 (275)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHh---HHHHHHH
Confidence 3444444566778 7788889999999999999999999999999999998887 4444443
No 6
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=71.93 E-value=15 Score=26.09 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=28.6
Q ss_pred hhHHHHhhHhhhhhHHHHHHHHhhhhchhhHHHHHHhHHHHH-HHHHhhc
Q 030796 121 PSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQ-VCIIAKI 169 (171)
Q Consensus 121 PsMWlAGm~FGYg~GFLiIm~g~~IGmsLPyfIG~lF~~rI~-~WL~~~~ 169 (171)
|+.-+. +.-|+-+|+......+++|..+--.+...+-++.. ++++++.
T Consensus 2 P~~~~~-~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~ 50 (123)
T PF09335_consen 2 PGSILL-IAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKL 50 (123)
T ss_pred ChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 444444 55666666666666666666666666666665554 4555443
No 7
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=67.84 E-value=39 Score=30.64 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=41.3
Q ss_pred CcceeehhhhhhhcccceeccCCChhHH----HHhhHhhhhhHHHHHHHHhhhhchh-hHHHHHHhHHH---------HH
Q 030796 97 STPVLAVLVFASVALFPTLLLPSSPSMW----VAGMTFGYGFGFLLIMSAVAVGISL-PYFIGSHFLHR---------IQ 162 (171)
Q Consensus 97 ~~pvla~vl~aS~AlFP~~LlPSsPsMW----lAGm~FGYg~GFLiIm~g~~IGmsL-PyfIG~lF~~r---------I~ 162 (171)
||-+-..+...|++- +.-|.| .+|..|.||++...+..|..+|.-+ -++.+..+|+. +-
T Consensus 35 gr~~~~~~~~~s~~A-------t~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~ 107 (487)
T TIGR02121 35 GRSLGPFVTALSAGA-------SDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLP 107 (487)
T ss_pred CCcccHHHHHHHHHH-------HHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHH
Confidence 666666665555531 233444 6788988888877666676666543 34455555532 45
Q ss_pred HHHHhhcC
Q 030796 163 VCIIAKID 170 (171)
Q Consensus 163 ~WL~~~~~ 170 (171)
+++++|++
T Consensus 108 e~l~~Ryg 115 (487)
T TIGR02121 108 DFFENRFN 115 (487)
T ss_pred HHHHHHhC
Confidence 78888875
No 8
>PRK01844 hypothetical protein; Provisional
Probab=58.43 E-value=19 Score=26.65 Aligned_cols=27 Identities=26% Similarity=0.531 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHhhhhchhhHHHHH-HhH
Q 030796 132 YGFGFLLIMSAVAVGISLPYFIGS-HFL 158 (171)
Q Consensus 132 Yg~GFLiIm~g~~IGmsLPyfIG~-lF~ 158 (171)
.|+..+++++|..+|..+-||+++ .|.
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~ 30 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMM 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888899999999999987 444
No 9
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=55.51 E-value=27 Score=32.50 Aligned_cols=71 Identities=8% Similarity=0.165 Sum_probs=44.0
Q ss_pred CcceeehhhhhhhcccceeccCCChhHHHHhhHhhhhhHHHHHHHHhhhhc-hhhHHHHHHhHH----HHHHHHHhhcC
Q 030796 97 STPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGI-SLPYFIGSHFLH----RIQVCIIAKID 170 (171)
Q Consensus 97 ~~pvla~vl~aS~AlFP~~LlPSsPsMWlAGm~FGYg~GFLiIm~g~~IGm-sLPyfIG~lF~~----rI~~WL~~~~~ 170 (171)
||-+-..+.-.|++ =+ .+-..-.+..+|+++-||+..+....|..+|. .+.|+++.-+|+ -+-+++++|++
T Consensus 66 Gr~~~~~~~g~si~--at-~~SaasflG~~G~~y~~G~~~~~~~~g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~ 141 (549)
T TIGR02711 66 GGNITGFQNGLAIA--GD-YMSAASFLGISALVYTSGYDGLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLK 141 (549)
T ss_pred CCCccHHHHHHHHH--HH-HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcC
Confidence 66555544332222 11 22333467899999999988877777777776 445666776653 34567777764
No 10
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=50.98 E-value=34 Score=26.54 Aligned_cols=53 Identities=23% Similarity=0.416 Sum_probs=35.6
Q ss_pred ccceeccCCChhHHHHhhHhhhhhHHHHHHHHhhhhchhhHHHHHHhHHHHHHHHHhhc
Q 030796 111 LFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQVCIIAKI 169 (171)
Q Consensus 111 lFP~~LlPSsPsMWlAGm~FGYg~GFLiIm~g~~IGmsLPyfIG~lF~~rI~~WL~~~~ 169 (171)
+.-+..+|+.| .| ...|---+|. .....++-.+.|++|...--.+-.++|++.
T Consensus 44 ~~~~~~lp~~~-~~--~~~~~~vf~~---~~ri~~aS~~a~lisq~~d~~if~~lk~~~ 96 (145)
T PF02592_consen 44 IWIVILLPPAP-FW--QEAFESVFGP---TPRIALASLIAFLISQLLDVYIFSKLKRKT 96 (145)
T ss_pred HHHHHHcCCCh-hh--HHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455788888 55 4344333433 344556667889999988888888888874
No 11
>PRK00523 hypothetical protein; Provisional
Probab=50.28 E-value=30 Score=25.58 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=20.1
Q ss_pred hhHHHHHHHHhhhhchhhHHHHH-HhH
Q 030796 133 GFGFLLIMSAVAVGISLPYFIGS-HFL 158 (171)
Q Consensus 133 g~GFLiIm~g~~IGmsLPyfIG~-lF~ 158 (171)
|+..++++.+..+|..+-||+++ .|.
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark~~~ 31 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKKMFK 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778889999999999987 444
No 12
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=49.38 E-value=55 Score=24.29 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=35.7
Q ss_pred HHhhHhhhhhHHHHHHHHhhhhchhhHHHHHHhHHHHHHHHHhhc
Q 030796 125 VAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQVCIIAKI 169 (171)
Q Consensus 125 lAGm~FGYg~GFLiIm~g~~IGmsLPyfIG~lF~~rI~~WL~~~~ 169 (171)
+.++..||--||.--. ...+|..+.++++..+.+.+.+|+++.+
T Consensus 10 l~~~~~G~~rG~~~~~-~~l~~~i~a~~~a~~~~~~~~~~l~~~~ 53 (146)
T PF02674_consen 10 LIFAIKGYRRGFIREL-FSLIGLIVALFVAFLFYPPLAPFLSNYF 53 (146)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678899999988766 4556888888999999999999988743
No 13
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=48.22 E-value=40 Score=24.58 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=23.1
Q ss_pred HHhhHhhhhhHHHHHHHHhhhhchhhHHHHH-HhHHHHHHHHHhh
Q 030796 125 VAGMTFGYGFGFLLIMSAVAVGISLPYFIGS-HFLHRIQVCIIAK 168 (171)
Q Consensus 125 lAGm~FGYg~GFLiIm~g~~IGmsLPyfIG~-lF~~rI~~WL~~~ 168 (171)
+.|+.||+..+.+.+.. +.|++-+ .--.|+++||.+.
T Consensus 21 lvG~~~g~~~~~l~~~l-------~~~l~wh~~~l~rL~~WL~~~ 58 (90)
T PF11808_consen 21 LVGWLFGHLWWALLLGL-------LLYLFWHLYQLYRLERWLRNP 58 (90)
T ss_pred HHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhCC
Confidence 46888888876655432 2333333 3456899999864
No 14
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=47.12 E-value=21 Score=26.23 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=28.3
Q ss_pred HHhhHhhhhhHHHHHHHHhhhhchhhHHHHHHhHHHHHHHHH
Q 030796 125 VAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQVCII 166 (171)
Q Consensus 125 lAGm~FGYg~GFLiIm~g~~IGmsLPyfIG~lF~~rI~~WL~ 166 (171)
++++.+|...|.. +.|..+|..+.+...++-+.|-++|+.
T Consensus 27 ~~~~~~gi~~~~~--~~g~i~g~~~~~~~~k~K~~~~~g~l~ 66 (95)
T PF07178_consen 27 LILFVIGILSGHF--LIGLILGIVLWWGYRKFKKGRGRGFLL 66 (95)
T ss_pred HHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHccCCccHHH
Confidence 3455566666663 357778888888888888877777764
No 15
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=44.88 E-value=14 Score=32.18 Aligned_cols=25 Identities=40% Similarity=0.724 Sum_probs=21.6
Q ss_pred cCCChhHHHHhhHhhhhhHHHHHHH
Q 030796 117 LPSSPSMWVAGMTFGYGFGFLLIMS 141 (171)
Q Consensus 117 lPSsPsMWlAGm~FGYg~GFLiIm~ 141 (171)
=|-+|+.|++|..||-+.+-.+-|-
T Consensus 99 hp~s~~~~l~GfSFGa~Ia~~la~r 123 (210)
T COG2945 99 HPDSASCWLAGFSFGAYIAMQLAMR 123 (210)
T ss_pred CCCchhhhhcccchHHHHHHHHHHh
Confidence 3788999999999999998887764
No 16
>PRK12488 acetate permease; Provisional
Probab=44.09 E-value=50 Score=30.79 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=35.4
Q ss_pred hHHHHhhHhhhhhHHHHHHHHhhhhchh-hHHHHHHhHH----HHHHHHHhhcC
Q 030796 122 SMWVAGMTFGYGFGFLLIMSAVAVGISL-PYFIGSHFLH----RIQVCIIAKID 170 (171)
Q Consensus 122 sMWlAGm~FGYg~GFLiIm~g~~IGmsL-PyfIG~lF~~----rI~~WL~~~~~ 170 (171)
.+-.+|..+.+|+..+....|..+|..+ .++++..+|+ -+-+++++|++
T Consensus 88 flG~~G~~y~~G~~~~~~~~g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~ 141 (549)
T PRK12488 88 FLGISAMMFMNGYDGLLYALGVLAGWPIILFLIAERLRNLGKYTFADVVSYRLA 141 (549)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcC
Confidence 4567889999988877777787777655 4567776663 46678888874
No 17
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=43.44 E-value=44 Score=24.38 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHh
Q 030796 50 GKVWYWVKLAFFLTSVGLLAAVFIKW 75 (171)
Q Consensus 50 ~~~~~W~K~~~~~~~l~~l~~v~~kW 75 (171)
|..+-|+|+.++++.++++.+-.+.|
T Consensus 1 r~~~~~ik~~~LF~~~T~lfYy~~~w 26 (71)
T PF14004_consen 1 RRWLDMIKFFLLFTGCTLLFYYAILW 26 (71)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999988888
No 18
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.50 E-value=33 Score=27.17 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=13.2
Q ss_pred HHhhHhhhhhHHHHHHH
Q 030796 125 VAGMTFGYGFGFLLIMS 141 (171)
Q Consensus 125 lAGm~FGYg~GFLiIm~ 141 (171)
++|++||--.|.+.+|.
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 48889998888877663
No 19
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=40.11 E-value=80 Score=25.82 Aligned_cols=51 Identities=12% Similarity=-0.004 Sum_probs=37.3
Q ss_pred CCChhHHHHhhHhhhhhHHHHHHHHhhhhchhh-----HHHHHHhHHHHHHHHHhh
Q 030796 118 PSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLP-----YFIGSHFLHRIQVCIIAK 168 (171)
Q Consensus 118 PSsPsMWlAGm~FGYg~GFLiIm~g~~IGmsLP-----yfIG~lF~~rI~~WL~~~ 168 (171)
++.-..-++|+.||=++|.+.-..+..+++.++ +|.|+.+--=+-+.+-||
T Consensus 33 ~~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~~g~~~afpg~~~~a~laGliyrk 88 (160)
T TIGR02359 33 VQHFVNVIAGVLLGPWYALAVAFIIGLLRNTLGLGTVLAFPGGMPGALLAGLLYRF 88 (160)
T ss_pred hhHHHHHHHHHHHchHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 345567789999999999998888887777665 677776665555555444
No 20
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=38.94 E-value=57 Score=25.83 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=29.1
Q ss_pred ccceeccCCChhHHHHhhHhhhhhHHHHHHHHhhhhchhhHHHHHHhH---HHHHHHHHhhc
Q 030796 111 LFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFL---HRIQVCIIAKI 169 (171)
Q Consensus 111 lFP~~LlPSsPsMWlAGm~FGYg~GFLiIm~g~~IGmsLPyfIG~lF~---~rI~~WL~~~~ 169 (171)
+-|++++-++...-...+.++.+.|..+...|..+.+. .+.+.+.+- -|.-+|..|.-
T Consensus 119 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~glGlll~~~-~~~l~k~~~~~~~~y~kw~~~~v 179 (181)
T PF08006_consen 119 LSGIILLISGIFGGFFSIFFSLFFGIGLFGLGLLLIVI-TFYLTKLFIKLTVRYLKWNIKMV 179 (181)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444444444445555555555555543 344555333 35556666543
No 21
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=38.87 E-value=36 Score=31.73 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=58.8
Q ss_pred hcceeccc---chhhhhhhhhhccCcceeehhhhhhhcccce-eccCCChhHHHHhhHhhhhhHHHHHHHHhhhhchhhH
Q 030796 76 VGPFFMDK---EVIPIINWETTTFSTPVLAVLVFASVALFPT-LLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPY 151 (171)
Q Consensus 76 ~~P~~~~K---vliPim~Wea~tF~~pvla~vl~aS~AlFP~-~LlPSsPsMWlAGm~FGYg~GFLiIm~g~~IGmsLPy 151 (171)
+.|.++|- .+.|+.+=-++.-++|.+.+.+-.+..+.-+ .++|-+|..-.+--.+|--+|-.++. |..++ +|-
T Consensus 109 ~IPvF~dv~~viL~Pl~~~la~~~~~s~~~~~~~l~~gl~~~h~lvPPtPgpla~a~~lg~dlG~~il~-Gl~va--ip~ 185 (441)
T PF02447_consen 109 GIPVFFDVGFVILAPLAFSLARKTGKSLLYLALPLAAGLSVTHALVPPTPGPLAAAGALGADLGLVILY-GLIVA--IPA 185 (441)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHhCCChhHHHHH-hHHHH--HHH
Confidence 55666664 4679999999999999988877666666553 68899999999988999999987664 55544 552
Q ss_pred H-H-HHHhHH
Q 030796 152 F-I-GSHFLH 159 (171)
Q Consensus 152 f-I-G~lF~~ 159 (171)
. + |.++.+
T Consensus 186 ~~iag~~~~~ 195 (441)
T PF02447_consen 186 MLIAGPLYGR 195 (441)
T ss_pred HHHHHHHHHH
Confidence 2 4 445543
No 22
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=38.31 E-value=70 Score=25.25 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=36.6
Q ss_pred hHHHHh----hHhhhhhHHHHHHHHhhhhchhhHHHHHHhHHHHHHHHHh
Q 030796 122 SMWVAG----MTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQVCIIA 167 (171)
Q Consensus 122 sMWlAG----m~FGYg~GFLiIm~g~~IGmsLPyfIG~lF~~rI~~WL~~ 167 (171)
-|.+|| .+||-.+|. =.|+++++|-..+=..|--+++.|+++.+|
T Consensus 17 iMI~AGd~Id~~lg~~~gi-StmAAAalGN~vSDv~Gi~~~~~vE~~~~r 65 (111)
T PF10507_consen 17 IMIIAGDYIDNTLGVTFGI-STMAAAALGNLVSDVAGIGLGGYVERLAQR 65 (111)
T ss_pred HHHHcchHHHHHHHHHHhH-HHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 366777 456666663 478899999999999999999999999876
No 23
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=36.80 E-value=78 Score=29.38 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=32.3
Q ss_pred HHHHhhHhhhhhHHHHHHHHhhhhch-hhHHHHHHhHHH----HHHHHHhhcC
Q 030796 123 MWVAGMTFGYGFGFLLIMSAVAVGIS-LPYFIGSHFLHR----IQVCIIAKID 170 (171)
Q Consensus 123 MWlAGm~FGYg~GFLiIm~g~~IGms-LPyfIG~lF~~r----I~~WL~~~~~ 170 (171)
+-.+|..|-+|+..+....|..+|.. +.|+++..+|+. +-++|++|++
T Consensus 54 lG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~~T~~e~l~~Rf~ 106 (552)
T TIGR03648 54 ISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGKYTVPDFIGDRYY 106 (552)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHhC
Confidence 45667788888877777777776654 456667666532 4578888774
No 24
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=36.28 E-value=78 Score=24.00 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=24.9
Q ss_pred HHhhHhhhhhHH--HHHHHHhhhhchhhHHHHHHhHHHHH
Q 030796 125 VAGMTFGYGFGF--LLIMSAVAVGISLPYFIGSHFLHRIQ 162 (171)
Q Consensus 125 lAGm~FGYg~GF--LiIm~g~~IGmsLPyfIG~lF~~rI~ 162 (171)
++|...|+.++. +..+.+..+|..+.|++-+.|++|..
T Consensus 83 i~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~~~ 122 (135)
T PF04246_consen 83 IAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDRRLK 122 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 556666666664 44455666777777888887776654
No 25
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=36.27 E-value=68 Score=24.93 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcceecccchhhhhhhhhhccCcceeehhhhhhhcccc
Q 030796 56 VKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFP 113 (171)
Q Consensus 56 ~K~~~~~~~l~~l~~v~~kW~~P~~~~KvliPim~Wea~tF~~pvla~vl~aS~AlFP 113 (171)
.|.+++.++|.+++.+++..+.=...++ ++ .-+.-..++++.+.+.+.|
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~~-----i~----~~~~~~~~llilG~L~fIP 89 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFGH-----ID----GDRDRGWALLILGILCFIP 89 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cC----CCCcccchHHHHHHHHHhc
Confidence 3666666666666666655543333332 12 1233445667777666555
No 26
>TIGR02831 spo_II_M stage II sporulation protein M. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This predicted integral membrane protein is designated stage II sporulation protein M.
Probab=36.01 E-value=59 Score=26.78 Aligned_cols=33 Identities=18% Similarity=0.611 Sum_probs=20.0
Q ss_pred hHHHHhhH-hhhhhHHH-HHHHHhhhhchhhHHHH
Q 030796 122 SMWVAGMT-FGYGFGFL-LIMSAVAVGISLPYFIG 154 (171)
Q Consensus 122 sMWlAGm~-FGYg~GFL-iIm~g~~IGmsLPyfIG 154 (171)
.||+.|++ ||--.=++ +.+=|..+|.+.-+++.
T Consensus 79 li~~lGl~~~Gip~i~~~l~~nGf~~Gf~v~~~v~ 113 (200)
T TIGR02831 79 LMWILGLSIIGLPIILILDFLKGFVVGFTVGFLVN 113 (200)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777775 66655555 55556666666655543
No 27
>PRK09395 actP acetate permease; Provisional
Probab=35.74 E-value=78 Score=29.44 Aligned_cols=50 Identities=12% Similarity=0.256 Sum_probs=33.3
Q ss_pred hhHHHHhhHhhhhhHHHHHHHHhhhhchh-hHHHHHHhHH----HHHHHHHhhcC
Q 030796 121 PSMWVAGMTFGYGFGFLLIMSAVAVGISL-PYFIGSHFLH----RIQVCIIAKID 170 (171)
Q Consensus 121 PsMWlAGm~FGYg~GFLiIm~g~~IGmsL-PyfIG~lF~~----rI~~WL~~~~~ 170 (171)
-.+..+|+.+.+|+..+....|..+|.-+ .+++++.+|+ -+-+++++|++
T Consensus 89 tfiG~~g~~y~~G~~~~~~~~~~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Ryg 143 (551)
T PRK09395 89 SFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLK 143 (551)
T ss_pred HHHHhhHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcC
Confidence 45677888888888776666677676544 5556665553 25577777774
No 28
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=34.45 E-value=73 Score=27.80 Aligned_cols=50 Identities=14% Similarity=0.285 Sum_probs=29.9
Q ss_pred hhHHHHhhHhhhhhHHHHHHHHhhhhch-hhHHHHHHhHH----HHHHHHHhhcC
Q 030796 121 PSMWVAGMTFGYGFGFLLIMSAVAVGIS-LPYFIGSHFLH----RIQVCIIAKID 170 (171)
Q Consensus 121 PsMWlAGm~FGYg~GFLiIm~g~~IGms-LPyfIG~lF~~----rI~~WL~~~~~ 170 (171)
-.+..+|+.+-||++.+....|..+++- ..++....+|+ -+-+++++|++
T Consensus 23 t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg 77 (407)
T TIGR00813 23 QFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNGAYTMPEYLEKRFG 77 (407)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHhC
Confidence 3456778888888777666666555533 23444444332 14578888775
No 29
>COG1238 Predicted membrane protein [Function unknown]
Probab=34.43 E-value=25 Score=28.83 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=43.4
Q ss_pred hccCcceeehhhhhhhcccceeccCCCh---hHHHHhhHhhhhhHHHHHHHHhhhhchhhHHHHHHhHHHHHH-HH
Q 030796 94 TTFSTPVLAVLVFASVALFPTLLLPSSP---SMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQV-CI 165 (171)
Q Consensus 94 ~tF~~pvla~vl~aS~AlFP~~LlPSsP---sMWlAGm~FGYg~GFLiIm~g~~IGmsLPyfIG~lF~~rI~~-WL 165 (171)
+..+-+-|.++.|.|-.++|+ ||-+ +|-++| .--+.=.++-..|.+.|...-|++|+...+++++ |.
T Consensus 15 ~~~a~~~Lf~vaF~eat~lP~---~sE~~l~~m~~~~--~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~~~ 85 (161)
T COG1238 15 QAYAYAGLFIVAFLEATLLPV---PSEVLLAPMLLLG--LNAWILALVATLGSVLGGLVNYALGRFLPEFIARRWF 85 (161)
T ss_pred HHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHcC--CchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHHhh
Confidence 334555677777777777764 4432 334444 3445555666778889999999999966555555 55
No 30
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=33.95 E-value=1.4e+02 Score=21.11 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=26.9
Q ss_pred HHHHHHhhhhchhhHHHHHHhHHHHHHHHHhhc
Q 030796 137 LLIMSAVAVGISLPYFIGSHFLHRIQVCIIAKI 169 (171)
Q Consensus 137 LiIm~g~~IGmsLPyfIG~lF~~rI~~WL~~~~ 169 (171)
+..+.|.-+++.++|+.=+-.|+|..+.+.++-
T Consensus 34 ~~~l~A~vis~~lS~~ll~~~R~~~~~~ia~~~ 66 (69)
T PF14012_consen 34 VAALLALVISMPLSYVLLRRLRDRASADIAARD 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345668888999999999999999988877653
No 31
>PF01944 DUF95: Integral membrane protein DUF95; InterPro: IPR002798 Many members of this family have no known function and are predicted to be integral membrane proteins. Q9V182 from SWISSPROT is annotated as "Stage II sporulation protein M related"; and weakly related to other proteins with similar annotation.
Probab=33.64 E-value=66 Score=24.46 Aligned_cols=20 Identities=30% Similarity=0.733 Sum_probs=11.9
Q ss_pred cCCChhHHHHhhHhhhhhHH
Q 030796 117 LPSSPSMWVAGMTFGYGFGF 136 (171)
Q Consensus 117 lPSsPsMWlAGm~FGYg~GF 136 (171)
+|+--.+..-|.++|+-.++
T Consensus 71 i~~~~~l~~nG~~lG~~~~~ 90 (173)
T PF01944_consen 71 IPSIFILFFNGFILGFVIGF 90 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666666663
No 32
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=32.82 E-value=96 Score=28.38 Aligned_cols=45 Identities=13% Similarity=0.264 Sum_probs=23.8
Q ss_pred HhhHhhhhhHHHHHHHHhhhhchhh-HHHHHHhH-HH--------HHHHHHhhcC
Q 030796 126 AGMTFGYGFGFLLIMSAVAVGISLP-YFIGSHFL-HR--------IQVCIIAKID 170 (171)
Q Consensus 126 AGm~FGYg~GFLiIm~g~~IGmsLP-yfIG~lF~-~r--------I~~WL~~~~~ 170 (171)
+|..+-+|++...+..|..+|.-+. ++++..+| .+ +-+++++|++
T Consensus 65 ~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~ 119 (502)
T PRK15419 65 PGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFE 119 (502)
T ss_pred hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhC
Confidence 5666666666555555555553222 22233222 21 2289999985
No 33
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=32.67 E-value=2e+02 Score=25.23 Aligned_cols=50 Identities=30% Similarity=0.560 Sum_probs=34.7
Q ss_pred ccchhhhhhhhhhccCcceeehhhhhhhcccceeccCCChhHHHHhhHhhhhh---HHHHHHHHhhhhchh
Q 030796 82 DKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGF---GFLLIMSAVAVGISL 149 (171)
Q Consensus 82 ~KvliPim~Wea~tF~~pvla~vl~aS~AlFP~~LlPSsPsMWlAGm~FGYg~---GFLiIm~g~~IGmsL 149 (171)
.|..-|..-|- |..|||-.+++= .+|-+|+ ||.+. ||+-++.+.++.|++
T Consensus 196 r~~~~~~l~w~---------aA~LFAlp~lRN--~lPGaPP-------~G~~iD~~~vlW~~i~l~~~m~~ 248 (256)
T PF14494_consen 196 RKFEPPMLTWM---------AAMLFALPPLRN--ILPGAPP-------IGSWIDFAGVLWVLIALVASMVL 248 (256)
T ss_pred cccccchHHHH---------HHHHHhhhhHhc--cCCCCCC-------CcceEeeeehHHHHHHHHHHHHH
Confidence 55666666664 456777777664 5899998 67764 777777777777665
No 34
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=32.16 E-value=52 Score=23.75 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=17.6
Q ss_pred HHHHHHhhhhchhhHHHHH-HhHH
Q 030796 137 LLIMSAVAVGISLPYFIGS-HFLH 159 (171)
Q Consensus 137 LiIm~g~~IGmsLPyfIG~-lF~~ 159 (171)
|+++.+..+|..+-||+++ .|.+
T Consensus 1 l~iilali~G~~~Gff~ar~~~~k 24 (64)
T PF03672_consen 1 LLIILALIVGAVIGFFIARKYMEK 24 (64)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788889999999987 5543
No 35
>PRK03612 spermidine synthase; Provisional
Probab=32.09 E-value=68 Score=29.98 Aligned_cols=22 Identities=14% Similarity=0.446 Sum_probs=16.5
Q ss_pred HHHHHHHHhhhhchhhHHHHHH
Q 030796 135 GFLLIMSAVAVGISLPYFIGSH 156 (171)
Q Consensus 135 GFLiIm~g~~IGmsLPyfIG~l 156 (171)
-.++...|..+|+++|++....
T Consensus 114 ~~~~~~~~~l~G~~~Pl~~~~~ 135 (521)
T PRK03612 114 YVLVLLIGLLIGMEIPLLMRIL 135 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567899999999987643
No 36
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=31.46 E-value=12 Score=30.05 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcce
Q 030796 53 WYWVKLAFFLTSVGLLAAVFIKWVGPF 79 (171)
Q Consensus 53 ~~W~K~~~~~~~l~~l~~v~~kW~~P~ 79 (171)
+.|.|+.+.+.++.+.+.++++|.-|-
T Consensus 6 ~~W~K~~~~G~~ii~~G~~l~~y~tPT 32 (128)
T PF07960_consen 6 RRWAKMLVAGAVIIGGGPALVKYTTPT 32 (128)
T ss_pred HHHHHHHHhcceeEeechHHheecCCC
Confidence 469999999999999999999998883
No 37
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=31.38 E-value=1.3e+02 Score=24.51 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=21.1
Q ss_pred hcccceeccCCChhHHHHhhHhhhhhHHHHHHH
Q 030796 109 VALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMS 141 (171)
Q Consensus 109 ~AlFP~~LlPSsPsMWlAGm~FGYg~GFLiIm~ 141 (171)
++++|.++=|+++.-+..-++.|-.+..+....
T Consensus 132 la~~pqfv~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (208)
T COG1280 132 LAFLPQFVDPGAGLVLLQALILGLVFILVGFVV 164 (208)
T ss_pred HHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 578999999999885444444544444444433
No 38
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=31.00 E-value=51 Score=27.37 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcceecccchhhhh
Q 030796 54 YWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPII 89 (171)
Q Consensus 54 ~W~K~~~~~~~l~~l~~v~~kW~~P~~~~KvliPim 89 (171)
.|..+++.++++++++++.+.+.+|+ |.+.|.+
T Consensus 40 ~w~~va~~~l~i~~~~v~av~~l~pl---k~v~Pyv 72 (228)
T PRK13872 40 NWRLMAFGCLALSAGLAGGLVWQSAR---GTVVPWV 72 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc---CcEEEEE
Confidence 45555667777777777778888885 6777854
No 39
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=30.19 E-value=78 Score=32.20 Aligned_cols=21 Identities=24% Similarity=0.721 Sum_probs=15.4
Q ss_pred hhHhhhhhHHHHHHHHhhhhc
Q 030796 127 GMTFGYGFGFLLIMSAVAVGI 147 (171)
Q Consensus 127 Gm~FGYg~GFLiIm~g~~IGm 147 (171)
+.-++++++||++++--.+|-
T Consensus 175 ~~~l~f~~~~ll~lttQ~lGy 195 (761)
T KOG2262|consen 175 KRNLSFGYAFLLVLTTQLLGY 195 (761)
T ss_pred hccccHHHHHHHHHHHHHhcc
Confidence 345788888999887766664
No 40
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=29.50 E-value=1e+02 Score=23.67 Aligned_cols=32 Identities=22% Similarity=0.106 Sum_probs=23.4
Q ss_pred HHHHHhhhhchhhHHHHHHhHHHHHHHHHhhc
Q 030796 138 LIMSAVAVGISLPYFIGSHFLHRIQVCIIAKI 169 (171)
Q Consensus 138 iIm~g~~IGmsLPyfIG~lF~~rI~~WL~~~~ 169 (171)
....-+.+|-.+|...=.+|-+++.+|++|+.
T Consensus 18 ~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~ 49 (121)
T PF06695_consen 18 EAFLLAFLGNILPVPFILLFLDKILKWLKRKP 49 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33334457888888777888889999987754
No 41
>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.06 E-value=88 Score=26.47 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=24.6
Q ss_pred HHHHHHhhhhchhhHHHHHHhHHHHHH----HHHhh
Q 030796 137 LLIMSAVAVGISLPYFIGSHFLHRIQV----CIIAK 168 (171)
Q Consensus 137 LiIm~g~~IGmsLPyfIG~lF~~rI~~----WL~~~ 168 (171)
.+.|..-+.|+.+||+.-.+|-+|..+ |++|+
T Consensus 165 ~~ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~ 200 (220)
T COG0785 165 ALLLAAYALGLALPFLLLALLSGRALKAFSRKLRRH 200 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667789999999998888777766 66654
No 42
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=28.79 E-value=28 Score=30.99 Aligned_cols=40 Identities=30% Similarity=0.502 Sum_probs=25.9
Q ss_pred hhhccCcceeeh-hhhhhh------cccceeccCCChhHHHHhhHhh
Q 030796 92 ETTTFSTPVLAV-LVFASV------ALFPTLLLPSSPSMWVAGMTFG 131 (171)
Q Consensus 92 ea~tF~~pvla~-vl~aS~------AlFP~~LlPSsPsMWlAGm~FG 131 (171)
.+++||.||-.. .=+..+ .+|-.=|--.|.-||-||-+|.
T Consensus 147 larafgipvrcysaevvtlwyrppdvlfgakly~tsidmwsagcifa 193 (292)
T KOG0662|consen 147 LARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFA 193 (292)
T ss_pred hhhhcCCceEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHH
Confidence 368999998443 101111 2334456678899999999985
No 43
>PRK15003 cytochrome d ubiquinol oxidase subunit 2; Provisional
Probab=28.53 E-value=97 Score=28.73 Aligned_cols=55 Identities=31% Similarity=0.495 Sum_probs=28.8
Q ss_pred hhhhcccceeccCCC------hhHHHHhhHhhhhhHHHHHHHHhhhhchhhHHHHH--HhHHHHH
Q 030796 106 FASVALFPTLLLPSS------PSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGS--HFLHRIQ 162 (171)
Q Consensus 106 ~aS~AlFP~~LlPSs------PsMWlAGm~FGYg~GFLiIm~g~~IGmsLPyfIG~--lF~~rI~ 162 (171)
-...++|| .++||+ -..|=|.-. -|-+-++.+.+...+=..|-|.+=. .||.|++
T Consensus 305 ~~~~~lfP-~lvps~~~p~~sLTi~~AAss-~~tL~~ml~~a~i~~Pivl~Y~~~~Y~vFrgkv~ 367 (379)
T PRK15003 305 TAGIAMFP-FVMPSSTMMNASLTMWDATSS-QLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRIT 367 (379)
T ss_pred HHHHHhCC-ceeCCCCCCCcCeehhHhcCC-HhHHHHHHHHHHHHHHHHHHHHHhheeEeecccC
Confidence 34578999 899988 445544321 2334444444333332333333221 6887765
No 44
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=27.23 E-value=59 Score=27.37 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=14.9
Q ss_pred HHHHHHHhhhhchhhHHHHHHh
Q 030796 136 FLLIMSAVAVGISLPYFIGSHF 157 (171)
Q Consensus 136 FLiIm~g~~IGmsLPyfIG~lF 157 (171)
-+-......+.+.+.|++|++|
T Consensus 203 ~l~~~~~G~~aa~~ty~iG~l~ 224 (225)
T cd02434 203 GIIMLINGAASGGVSFFLGVLF 224 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3444445556677889999887
No 45
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=27.15 E-value=1.8e+02 Score=23.10 Aligned_cols=24 Identities=29% Similarity=0.771 Sum_probs=14.7
Q ss_pred ccCcceeehhhhhhhcccceeccCCCh
Q 030796 95 TFSTPVLAVLVFASVALFPTLLLPSSP 121 (171)
Q Consensus 95 tF~~pvla~vl~aS~AlFP~~LlPSsP 121 (171)
++.+|-- ++. -.++||.++-|..|
T Consensus 119 ~l~NPKa-ilf--~~a~~p~f~~~~~~ 142 (205)
T PRK10520 119 NLTNPKS-IVF--LAALFPQFIMPQQP 142 (205)
T ss_pred HhhCcHH-HHH--HHHHcccccCCCCc
Confidence 3477762 222 34789998766565
No 46
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=26.65 E-value=1.1e+02 Score=26.89 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=14.8
Q ss_pred ecccchhhhhhhhhhccCcceeehh
Q 030796 80 FMDKEVIPIINWETTTFSTPVLAVL 104 (171)
Q Consensus 80 ~~~KvliPim~Wea~tF~~pvla~v 104 (171)
.+|+.+--.=+=| +.+|.||||.+
T Consensus 420 ~ld~~i~s~~~v~-~~lglpvLg~I 443 (444)
T TIGR03017 420 LMDRRVRSADDII-EALDVPVLATI 443 (444)
T ss_pred HHhccCCCHHHHH-HHcCCCeeeeC
Confidence 3455554444444 46799999865
No 47
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=26.38 E-value=70 Score=22.39 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=19.6
Q ss_pred hhhcccceeccCCChhHH---HHhhHhhhhhHHHHHH
Q 030796 107 ASVALFPTLLLPSSPSMW---VAGMTFGYGFGFLLIM 140 (171)
Q Consensus 107 aS~AlFP~~LlPSsPsMW---lAGm~FGYg~GFLiIm 140 (171)
.+-|.-|.- |++|... ++|+.+|-.+|..++.
T Consensus 44 vd~A~~P~~--P~~P~~~lil~l~~~~Gl~lgi~~~~ 78 (82)
T PF13807_consen 44 VDPAIVPDK--PVSPKRALILALGLFLGLILGIGLAF 78 (82)
T ss_pred ccccccCCC--CCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 344555655 7777654 4566777766666554
No 48
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=26.16 E-value=1.1e+02 Score=22.20 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=15.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHH
Q 030796 47 WSCGKVWYWVKLAFFLTSVGLLAA 70 (171)
Q Consensus 47 ~~~~~~~~W~K~~~~~~~l~~l~~ 70 (171)
+..|.-..+.|++...+...+..+
T Consensus 86 ~~~r~~~~~~K~~~~~~~~~~~~~ 109 (232)
T PF12730_consen 86 PISRKKIFLAKFIVILIIILLLFL 109 (232)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHH
Confidence 334566789999877666554433
No 49
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=25.70 E-value=55 Score=31.12 Aligned_cols=122 Identities=22% Similarity=0.215 Sum_probs=79.9
Q ss_pred CCCCeeeecccCCC-------CCCCCCCCCCC----chhHHHHHHHHHHHHHHHHHHHHHhhcceecccc-------hhh
Q 030796 26 NKGDYLKLREYEEG-------EPGSPRRWSCG----KVWYWVKLAFFLTSVGLLAAVFIKWVGPFFMDKE-------VIP 87 (171)
Q Consensus 26 ~~geYvrL~~~~e~-------~~~~~~~~~~~----~~~~W~K~~~~~~~l~~l~~v~~kW~~P~~~~Kv-------liP 87 (171)
-.+++++-+++|-. ..+.+.++||. +-+.|-.-.....-++.|....+.|+-||+-=.+ =+|
T Consensus 14 ~~~~~~~C~eCd~~~~~P~l~~~q~A~CPRC~~~l~~~~~~sl~r~~a~A~s~LiLm~fa~~fp~i~i~l~G~~i~asl~ 93 (418)
T COG2995 14 PPGHLILCPECDMLVSLPRLDSGQSAYCPRCGHTLTRGGDWSLQRPAAYALAALILMPFALGFPLLSIRLLGVTIDASLL 93 (418)
T ss_pred CccceecCCCCCceeccccCCCCCcccCCCCCCccccCCCCCccchHHHHHHHHHHHHHHcCCceeEeeecceeeechHH
Confidence 56777777666541 23334666665 4455655555555556666677788899864322 245
Q ss_pred hhhhhhhccCcceeehhhhhhhcccceeccCCChhHHHHhhHhhhhhHHHHHHHHhhhhchhhHHHHHHhHHHHHHHH
Q 030796 88 IINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQVCI 165 (171)
Q Consensus 88 im~Wea~tF~~pvla~vl~aS~AlFP~~LlPSsPsMWlAGm~FGYg~GFLiIm~g~~IGmsLPyfIG~lF~~rI~~WL 165 (171)
=+-|....+|-+.+|.++|--..+.|++++=|--..|++ ...++-++-. .++.+|++.|.
T Consensus 94 ~g~~~m~~~gy~~~A~lvf~cv~~~P~~~~~~il~l~~~----------------~~~~~~~~~~--l~~l~~lk~Wv 153 (418)
T COG2995 94 EGIWVMTSQGYASLATLVFFCVQLAPALLLLSILYLWLA----------------ARLPVNLRPV--LLMLFRLKPWV 153 (418)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhccccchHH--HHHHHHhhhhh
Confidence 567999999999999999999999999987666655543 3333333333 55666677774
No 50
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=25.59 E-value=2.5e+02 Score=21.58 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=18.5
Q ss_pred CCChhHHHHhhHhhhhhHHHHHHHHhhhh
Q 030796 118 PSSPSMWVAGMTFGYGFGFLLIMSAVAVG 146 (171)
Q Consensus 118 PSsPsMWlAGm~FGYg~GFLiIm~g~~IG 146 (171)
|.+-..-++|+.||...|++.=..|..++
T Consensus 37 ~~~~~i~l~~~l~Gp~~G~ivg~ig~~l~ 65 (169)
T PF07155_consen 37 LGSIPIILAGLLFGPKYGAIVGAIGDLLS 65 (169)
T ss_pred hhhHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 34445567777888887777655555544
No 51
>PF14138 COX16: Cytochrome c oxidase assembly protein COX16
Probab=24.88 E-value=19 Score=26.35 Aligned_cols=17 Identities=35% Similarity=0.469 Sum_probs=8.8
Q ss_pred cCcceeehhhhhhhccc
Q 030796 96 FSTPVLAVLVFASVALF 112 (171)
Q Consensus 96 F~~pvla~vl~aS~AlF 112 (171)
||-|.+++++.||++|-
T Consensus 3 ~GlPf~~liV~GS~gL~ 19 (80)
T PF14138_consen 3 FGLPFLLLIVGGSFGLS 19 (80)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 45555555555555443
No 52
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=23.26 E-value=4e+02 Score=21.39 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=15.6
Q ss_pred HHHHhhhhchhhHHHHHHhHHHHH
Q 030796 139 IMSAVAVGISLPYFIGSHFLHRIQ 162 (171)
Q Consensus 139 Im~g~~IGmsLPyfIG~lF~~rI~ 162 (171)
.+..-++|+++|+.+-.++-++.+
T Consensus 158 ll~~y~lG~~lPll~~~~~~~~~~ 181 (211)
T PF02683_consen 158 LLLAYGLGFGLPLLLIGLFSGSLL 181 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888877666555433
No 53
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=23.17 E-value=36 Score=23.72 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=27.4
Q ss_pred CcceeehhhhhhhcccceeccCCChhHHHHhhHhhhhhHHHH
Q 030796 97 STPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLL 138 (171)
Q Consensus 97 ~~pvla~vl~aS~AlFP~~LlPSsPsMWlAGm~FGYg~GFLi 138 (171)
..|+-+++......+.+.++.|..+..-.+|+++++..+.+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (114)
T PF04116_consen 46 FHPLEALLLALLPLLLPLLLLPFHALAFLLGIALFYLWYIFI 87 (114)
T ss_pred cChHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHh
Confidence 344444444444444667778888888888888888776553
No 54
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=22.81 E-value=2.7e+02 Score=20.15 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=31.4
Q ss_pred hhHHHHhhHhhhhhHHHHHHHHhhhhchhhHHHHHHhH
Q 030796 121 PSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFL 158 (171)
Q Consensus 121 PsMWlAGm~FGYg~GFLiIm~g~~IGmsLPyfIG~lF~ 158 (171)
.-|+++||+|.-.-.|++--.+.-+++++.++.--+.-
T Consensus 16 Ii~Fila~i~i~it~F~~n~~~g~i~i~I~l~l~G~is 53 (63)
T PF06341_consen 16 IILFILAMIFINITAFLINQIAGLISIGITLFLAGLIS 53 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999988888888887654444
No 55
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=22.24 E-value=1.5e+02 Score=24.15 Aligned_cols=35 Identities=9% Similarity=0.217 Sum_probs=25.7
Q ss_pred CCCCCCchhHHHHHHHHHHHHH--HHHHHHHHhhcce
Q 030796 45 RRWSCGKVWYWVKLAFFLTSVG--LLAAVFIKWVGPF 79 (171)
Q Consensus 45 ~~~~~~~~~~W~K~~~~~~~l~--~l~~v~~kW~~P~ 79 (171)
..++++.-++|++-+++++++. ..++++.+|--|-
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~a~~s~~~~~~~~P~ 46 (128)
T PRK13717 10 VTAPRRSHWWWTVPGCLAMVLLNAAVSYGIVRLNAPV 46 (128)
T ss_pred ccccchhcchHHHHHHHHHHHHHHHHHHHHhhcCCCe
Confidence 4566667789998887777666 6667888887773
No 56
>COG1289 Predicted membrane protein [Function unknown]
Probab=21.95 E-value=2.5e+02 Score=26.95 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=34.3
Q ss_pred CcceeehhhhhhhcccceeccCCChhHHHHhhHhhhhhHHHHHHHHhhhhchhhHHHHHHhHHHHH
Q 030796 97 STPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQ 162 (171)
Q Consensus 97 ~~pvla~vl~aS~AlFP~~LlPSsPsMWlAGm~FGYg~GFLiIm~g~~IGmsLPyfIG~lF~~rI~ 162 (171)
++|-.|.+.++-.+.|...+.|+.+.-.... = |+=...|+.||+.+.+++-...+.|-.
T Consensus 449 ~~~~~a~~~i~l~v~~~~~l~~~~~~~~~~~------r-~~d~~iG~lIa~~~a~~v~~~~~~~~l 507 (674)
T COG1289 449 AKYRLATLGITLLVLFLVGLLGSNGPDYDLP------R-FLDTLLGSLIALALAFLVWPLWRPRRL 507 (674)
T ss_pred cchhHHHHHHHHHHHHHHHHcccchhhhhHH------H-HHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 5566666666666666666666543322221 1 445566788888887777665544333
No 57
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=21.76 E-value=2.4e+02 Score=25.93 Aligned_cols=57 Identities=28% Similarity=0.423 Sum_probs=29.1
Q ss_pred hhhhhcccceeccCCC-hhHHHHhhHhhhhhHHHHHHHHhhhhchhhHHHHH--HhHHHHH
Q 030796 105 VFASVALFPTLLLPSS-PSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGS--HFLHRIQ 162 (171)
Q Consensus 105 l~aS~AlFP~~LlPSs-PsMWlAGm~FGYg~GFLiIm~g~~IGmsLPyfIG~--lF~~rI~ 162 (171)
.-+..++||-++-||. -.+|=|- +=-|-+.++++.+...+=..|+|.+=. +||.|++
T Consensus 280 ~~~g~s~fP~v~p~~~~lTi~~Aa-ss~~tl~~m~i~~lv~lPivL~Y~~~~Y~vF~gk~~ 339 (346)
T COG1294 280 LGLGISLFPYVLPSSVSLTIWDAA-SSPLTLSVMLVVALVFLPIVLAYTIWSYRVFRGKIT 339 (346)
T ss_pred HHHHHHhCCcccCCcCceeeeccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3456789998877772 2222221 011223333443333334455666544 7887765
No 58
>TIGR00909 2A0306 amino acid transporter.
Probab=21.64 E-value=1.8e+02 Score=25.14 Aligned_cols=28 Identities=18% Similarity=0.406 Sum_probs=19.4
Q ss_pred ccchhhhhhhhhh---ccCcceeehhhhhhhcc
Q 030796 82 DKEVIPIINWETT---TFSTPVLAVLVFASVAL 111 (171)
Q Consensus 82 ~KvliPim~Wea~---tF~~pvla~vl~aS~Al 111 (171)
++..+| +|-++ +++.|+-|+++.+.+++
T Consensus 310 ~dg~lP--~~~~~~~~~~~~P~~a~~~~~~i~~ 340 (429)
T TIGR00909 310 RDGLLP--GSLSKVHPKTGTPHMSIIIFSLTAA 340 (429)
T ss_pred cCCCCc--HHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 455566 45433 78999999888776654
No 59
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=20.99 E-value=78 Score=28.31 Aligned_cols=71 Identities=21% Similarity=0.286 Sum_probs=43.8
Q ss_pred ccchhhh---hhhhhhccCcceeehhhhhhhcccceeccCCChhHHHHhhHhhhhhHHHHHHHHhhhhchhhHHHH--HH
Q 030796 82 DKEVIPI---INWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIG--SH 156 (171)
Q Consensus 82 ~KvliPi---m~Wea~tF~~pvla~vl~aS~AlFP~~LlPSsPsMWlAGm~FGYg~GFLiIm~g~~IGmsLPyfIG--~l 156 (171)
++..+|- ......+++.|+-|+++.+.+++.= .++..+. --.|-.+++-++++.-++|.+- ..
T Consensus 329 rdg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~-~~i~~~~-----------~~af~~l~s~~~~~~~~~Y~~~~~~~ 396 (475)
T TIGR03428 329 RDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGI-LLINVGN-----------SALFATLASVCIVLIYLAYLLVTVPL 396 (475)
T ss_pred hcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHH-HHHhcCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556774 4444457999999988887776422 2222111 1244556677888888999882 34
Q ss_pred hHHHHHHH
Q 030796 157 FLHRIQVC 164 (171)
Q Consensus 157 F~~rI~~W 164 (171)
+.+|+++|
T Consensus 397 l~~~~~~~ 404 (475)
T TIGR03428 397 LLRRLRGW 404 (475)
T ss_pred HHHHHhcc
Confidence 45555655
No 60
>PRK01766 multidrug efflux protein; Reviewed
Probab=20.81 E-value=1e+02 Score=26.80 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=27.3
Q ss_pred hhHHHHhhHhhhhhHHH--HHHHHhhhhchhhHHHHHHhHHHHHHHHHhh
Q 030796 121 PSMWVAGMTFGYGFGFL--LIMSAVAVGISLPYFIGSHFLHRIQVCIIAK 168 (171)
Q Consensus 121 PsMWlAGm~FGYg~GFL--iIm~g~~IGmsLPyfIG~lF~~rI~~WL~~~ 168 (171)
-++|+.++.+.|.+++. +=..|..+|+.+-.++...+.-+.-.+++||
T Consensus 396 ~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (456)
T PRK01766 396 IAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQ 445 (456)
T ss_pred HHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666665555443 2234666667766666665444445556655
No 61
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=20.71 E-value=1.6e+02 Score=23.50 Aligned_cols=39 Identities=8% Similarity=0.033 Sum_probs=23.9
Q ss_pred HHhhHhhhhhHH--HHHHHHhhhhchhhHHHHHHhHHHHHH
Q 030796 125 VAGMTFGYGFGF--LLIMSAVAVGISLPYFIGSHFLHRIQV 163 (171)
Q Consensus 125 lAGm~FGYg~GF--LiIm~g~~IGmsLPyfIG~lF~~rI~~ 163 (171)
++|...|+.++. +..+.+..+|..+.|++.+.+.+|..+
T Consensus 90 i~ga~l~~~~~~~e~~~~~~~~~g~~~g~~~~r~~~~~~~~ 130 (154)
T PRK10862 90 FLGAALFQLLFGSDLAALCGALLGGVGGFLLARGLSRKLAA 130 (154)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444444332 344567777888888888877766543
No 62
>PRK15028 cytochrome bd-II oxidase subunit 2; Provisional
Probab=20.47 E-value=49 Score=30.45 Aligned_cols=54 Identities=22% Similarity=0.525 Sum_probs=30.6
Q ss_pred hhhhhhcccceeccCCC------hhHHHHhhHhhhhhHHHHHHHHhhhhchhhHHHHH------HhHHHHHH
Q 030796 104 LVFASVALFPTLLLPSS------PSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGS------HFLHRIQV 163 (171)
Q Consensus 104 vl~aS~AlFP~~LlPSs------PsMWlAGm~FGYg~GFLiIm~g~~IGmsLPyfIG~------lF~~rI~~ 163 (171)
++-...++|| .++||+ -..|=|.-. -|-+.++++.+... +|..+++ .||.|++.
T Consensus 302 ~~~~~~~lfP-~ilps~~~p~~SLTi~~Aass-~~tL~~ml~~~~i~----lPivl~Y~~~~Y~vFrgkv~~ 367 (378)
T PRK15028 302 IFTAGITLFP-FVMPSSVSPISSLTLWDSTSS-QLTLSIMLVIVLIF----LPIVLLYTLWSYYKMWGRMTT 367 (378)
T ss_pred HHHHHHHhCC-ceeCCCCCCCCCeehHHhcCC-HHHHHHHHHHHHHH----HHHHHHhhhhheeEeecccCc
Confidence 3445678999 999987 445544321 23444444443333 3555544 68888753
Done!