Query 030796
Match_columns 171
No_of_seqs 44 out of 46
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 07:01:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gx0_A TRKA domain protein; me 18.6 4.5E+02 0.015 22.6 8.0 27 49-75 14-40 (565)
2 2zy9_A Mg2+ transporter MGTE; 16.5 2.9E+02 0.01 23.9 6.3 17 137-153 419-435 (473)
3 4dve_A Biotin transporter BIOY 14.1 4.6E+02 0.016 20.9 6.4 32 108-139 78-109 (198)
4 1v54_L VIIIA, cytochrome C oxi 13.4 1.4E+02 0.0049 19.1 2.6 14 142-155 28-41 (47)
5 4ev6_A Magnesium transport pro 10.3 59 0.002 26.8 0.0 28 125-152 298-331 (339)
6 4dve_A Biotin transporter BIOY 10.0 2.5E+02 0.0086 22.4 3.6 12 144-155 137-148 (198)
7 3fhk_A UPF0403 protein YPHP; d 9.4 61 0.0021 25.8 -0.2 8 118-125 105-112 (147)
8 2zqe_A MUTS2 protein; alpha/be 8.6 1.5E+02 0.005 20.3 1.5 15 156-170 46-60 (83)
9 2h3o_A MERF; membrane protein, 8.6 2.4E+02 0.0081 19.4 2.5 19 147-168 38-56 (61)
10 2l34_A TYRO protein tyrosine k 8.4 2.9E+02 0.0099 16.5 2.6 19 125-143 9-27 (33)
No 1
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=18.62 E-value=4.5e+02 Score=22.57 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=14.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHh
Q 030796 49 CGKVWYWVKLAFFLTSVGLLAAVFIKW 75 (171)
Q Consensus 49 ~~~~~~W~K~~~~~~~l~~l~~v~~kW 75 (171)
.++...+...+++.+++.++..+++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (565)
T 4gx0_A 14 RQNLKVLLLYCAFLLVMLLAYASIFRY 40 (565)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666665555555555555544
No 2
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=16.49 E-value=2.9e+02 Score=23.88 Aligned_cols=17 Identities=35% Similarity=0.725 Sum_probs=10.8
Q ss_pred HHHHHHhhhhchhhHHH
Q 030796 137 LLIMSAVAVGISLPYFI 153 (171)
Q Consensus 137 LiIm~g~~IGmsLPyfI 153 (171)
+.++.|+.+|..+|++.
T Consensus 419 ~~~~~a~~~g~~~p~~~ 435 (473)
T 2zy9_A 419 LIVFFANLVGAMLPFLL 435 (473)
T ss_dssp HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445777777777764
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=14.14 E-value=4.6e+02 Score=20.86 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=22.1
Q ss_pred hhcccceeccCCChhHHHHhhHhhhhhHHHHH
Q 030796 108 SVALFPTLLLPSSPSMWVAGMTFGYGFGFLLI 139 (171)
Q Consensus 108 S~AlFP~~LlPSsPsMWlAGm~FGYg~GFLiI 139 (171)
..+=+|++==-++=.-.+.|=|+||-+||++-
T Consensus 78 G~~GlPVFagg~gG~~~l~gPTgGYLiGF~~a 109 (198)
T 4dve_A 78 ALIGLPVLTGGNGGAASFLGPSGGYRIAWLFT 109 (198)
T ss_dssp HHHTCCCBTTTBCCSGGGGSTTHHHHHHHHHH
T ss_pred HHHcCccccCCCCchhHHhcchhHHHHHHHHH
Confidence 34447777544344566788999999999863
No 4
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=13.42 E-value=1.4e+02 Score=19.11 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=10.3
Q ss_pred HhhhhchhhHHHHH
Q 030796 142 AVAVGISLPYFIGS 155 (171)
Q Consensus 142 g~~IGmsLPyfIG~ 155 (171)
-..+|.++||+|.+
T Consensus 28 f~g~GF~~PF~i~~ 41 (47)
T 1v54_L 28 FFGSGFAAPFFIVR 41 (47)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHH
Confidence 45678888988765
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=10.29 E-value=59 Score=26.81 Aligned_cols=28 Identities=36% Similarity=0.640 Sum_probs=14.7
Q ss_pred HHhhHhhh------hhHHHHHHHHhhhhchhhHH
Q 030796 125 VAGMTFGY------GFGFLLIMSAVAVGISLPYF 152 (171)
Q Consensus 125 lAGm~FGY------g~GFLiIm~g~~IGmsLPyf 152 (171)
+-||-|.+ -+||.+++..+.+-+.++|+
T Consensus 298 iyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~~~ 331 (339)
T 4ev6_A 298 IYGMNFSYLPLANNPQGFWLVMALMVVIIMIFVY 331 (339)
T ss_dssp HTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHHHH
T ss_pred hccCcCCCCCCccCchHHHHHHHHHHHHHHHHHH
Confidence 44677763 35666665444444444443
No 6
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=9.98 E-value=2.5e+02 Score=22.42 Aligned_cols=12 Identities=25% Similarity=0.611 Sum_probs=4.9
Q ss_pred hhhchhhHHHHH
Q 030796 144 AVGISLPYFIGS 155 (171)
Q Consensus 144 ~IGmsLPyfIG~ 155 (171)
.+|+.+-|.+|.
T Consensus 137 l~G~~~iy~~G~ 148 (198)
T 4dve_A 137 LFGVIFVDFVGA 148 (198)
T ss_dssp HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 7
>3fhk_A UPF0403 protein YPHP; disulfide isomerase, thioredoxin superfamily, CXC motif, structural genomics, surface entropy reduction, Ser, PSI-2; 2.30A {Bacillus subtilis}
Probab=9.43 E-value=61 Score=25.79 Aligned_cols=8 Identities=75% Similarity=1.011 Sum_probs=5.7
Q ss_pred CCChhHHH
Q 030796 118 PSSPSMWV 125 (171)
Q Consensus 118 PSsPsMWl 125 (171)
||||||-|
T Consensus 105 PSSPS~AL 112 (147)
T 3fhk_A 105 PSSPSMAL 112 (147)
T ss_dssp CCSSEEEE
T ss_pred CCCchhee
Confidence 78888743
No 8
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=8.61 E-value=1.5e+02 Score=20.26 Aligned_cols=15 Identities=7% Similarity=0.038 Sum_probs=12.7
Q ss_pred HhHHHHHHHHHhhcC
Q 030796 156 HFLHRIQVCIIAKID 170 (171)
Q Consensus 156 lF~~rI~~WL~~~~~ 170 (171)
..|+.+++||++.+.
T Consensus 46 vLr~~V~~~L~~~~~ 60 (83)
T 2zqe_A 46 ALRQAIREALRRDKR 60 (83)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCc
Confidence 689999999998764
No 9
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=8.58 E-value=2.4e+02 Score=19.36 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=12.4
Q ss_pred chhhHHHHHHhHHHHHHHHHhh
Q 030796 147 ISLPYFIGSHFLHRIQVCIIAK 168 (171)
Q Consensus 147 msLPyfIG~lF~~rI~~WL~~~ 168 (171)
-.+|||||..+- +.|-+||
T Consensus 38 P~l~~figl~~Y---~~~r~~~ 56 (61)
T 2h3o_A 38 PALAIFIGLTIY---AIQRKRQ 56 (61)
T ss_dssp TTHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHH---HHHhhhh
Confidence 457899988776 4444444
No 10
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=8.45 E-value=2.9e+02 Score=16.47 Aligned_cols=19 Identities=37% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHhhHhhhhhHHHHHHHHh
Q 030796 125 VAGMTFGYGFGFLLIMSAV 143 (171)
Q Consensus 125 lAGm~FGYg~GFLiIm~g~ 143 (171)
+||+++|--.+.+++..+.
T Consensus 9 IaGIVvgdi~~t~~i~~~v 27 (33)
T 2l34_A 9 LAGIVVGDLVLTVLIALAV 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred EEeEeHHHHHHHHHHHHHH
Done!