Query 030796
Match_columns 171
No_of_seqs 44 out of 46
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 07:01:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030796.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030796hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nr9a1 f.51.1.1 (A:4-192) Glp 23.7 24 0.0018 24.8 2.7 10 27-36 44-53 (189)
2 d1tw9a1 a.45.1.1 (A:78-206) Cl 14.4 29 0.0021 21.8 1.2 12 159-170 115-126 (129)
3 d1m0ua1 a.45.1.1 (A:123-249) C 13.6 31 0.0023 21.9 1.2 12 159-170 113-124 (127)
4 d1okta1 a.45.1.1 (A:86-211) Pf 11.8 38 0.0028 21.7 1.2 12 159-170 112-123 (126)
5 d1l1la_ c.7.1.4 (A:) B12-depen 10.7 27 0.002 30.0 0.1 18 132-149 147-164 (721)
6 d2cvda1 a.45.1.1 (A:76-199) Cl 10.7 44 0.0032 20.6 1.2 13 158-170 109-121 (124)
7 d1pv7a_ f.38.1.2 (A:) Lactose 10.7 86 0.0063 21.2 2.8 52 88-139 278-331 (417)
8 d1knya2 d.218.1.1 (A:1-125) Ka 8.0 35 0.0025 23.3 -0.3 26 85-110 16-41 (125)
9 d2gsqa1 a.45.1.1 (A:76-202) Cl 6.7 83 0.006 19.1 1.2 11 160-170 114-124 (127)
10 d2vv5a3 f.34.1.1 (A:27-112) Me 5.4 3.2E+02 0.024 16.3 3.6 20 149-168 14-33 (86)
No 1
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=23.72 E-value=24 Score=24.77 Aligned_cols=10 Identities=0% Similarity=0.006 Sum_probs=5.2
Q ss_pred CCCeeeeccc
Q 030796 27 KGDYLKLREY 36 (171)
Q Consensus 27 ~geYvrL~~~ 36 (171)
++||-|+...
T Consensus 44 ~~~~wrl~T~ 53 (189)
T d2nr9a1 44 DSEVWRYISH 53 (189)
T ss_dssp GGCTTHHHHG
T ss_pred cCchHHhHHH
Confidence 4566665433
No 2
>d1tw9a1 a.45.1.1 (A:78-206) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]}
Probab=14.45 E-value=29 Score=21.77 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=8.9
Q ss_pred HHHHHHHHhhcC
Q 030796 159 HRIQVCIIAKID 170 (171)
Q Consensus 159 ~rI~~WL~~~~~ 170 (171)
-+|++|+++|++
T Consensus 115 P~ik~yl~~rp~ 126 (129)
T d1tw9a1 115 PRIKKWIETRPE 126 (129)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHHCcC
Confidence 347788888875
No 3
>d1m0ua1 a.45.1.1 (A:123-249) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=13.60 E-value=31 Score=21.91 Aligned_cols=12 Identities=17% Similarity=0.063 Sum_probs=9.3
Q ss_pred HHHHHHHHhhcC
Q 030796 159 HRIQVCIIAKID 170 (171)
Q Consensus 159 ~rI~~WL~~~~~ 170 (171)
-+|+.||++||+
T Consensus 113 P~ik~yl~~Rp~ 124 (127)
T d1m0ua1 113 EPIKAWIEKRPV 124 (127)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHHCCC
Confidence 457889998886
No 4
>d1okta1 a.45.1.1 (A:86-211) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=11.83 E-value=38 Score=21.66 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=8.7
Q ss_pred HHHHHHHHhhcC
Q 030796 159 HRIQVCIIAKID 170 (171)
Q Consensus 159 ~rI~~WL~~~~~ 170 (171)
.+|++||++|++
T Consensus 112 P~ik~yl~~r~~ 123 (126)
T d1okta1 112 PNIKNYITNRKE 123 (126)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHhCCC
Confidence 357788888875
No 5
>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide reductase {Lactobacillus leichmannii [TaxId: 28039]}
Probab=10.75 E-value=27 Score=29.97 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHhhhhchh
Q 030796 132 YGFGFLLIMSAVAVGISL 149 (171)
Q Consensus 132 Yg~GFLiIm~g~~IGmsL 149 (171)
+.+.+-+.|.|+.+|.|.
T Consensus 147 f~~~~~~lm~G~GvGf~v 164 (721)
T d1l1la_ 147 FSFLFDELMKGGGVGFSV 164 (721)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHhccCCCcceec
Confidence 334455578898888774
No 6
>d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.72 E-value=44 Score=20.58 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhcC
Q 030796 158 LHRIQVCIIAKID 170 (171)
Q Consensus 158 ~~rI~~WL~~~~~ 170 (171)
|..|++||++||+
T Consensus 109 ~P~vk~yl~~rp~ 121 (124)
T d2cvda1 109 IPAVANWIKRRPQ 121 (124)
T ss_dssp SHHHHHHHHHSCC
T ss_pred CHHHHHHHHHCcC
Confidence 4456778888875
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=10.68 E-value=86 Score=21.21 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=28.9
Q ss_pred hhhhhhhccCcceeehh--hhhhhcccceeccCCChhHHHHhhHhhhhhHHHHH
Q 030796 88 IINWETTTFSTPVLAVL--VFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLI 139 (171)
Q Consensus 88 im~Wea~tF~~pvla~v--l~aS~AlFP~~LlPSsPsMWlAGm~FGYg~GFLiI 139 (171)
+..|-.+.+++.-..++ +..++..+-..+.|+.+.++++.+.+|.+.|+...
T Consensus 278 ~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 331 (417)
T d1pv7a_ 278 FAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLV 331 (417)
T ss_dssp THHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 34445555555433222 22333344445567777777777777877776543
No 8
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=7.98 E-value=35 Score=23.30 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=20.0
Q ss_pred hhhhhhhhhhccCcceeehhhhhhhc
Q 030796 85 VIPIINWETTTFSTPVLAVLVFASVA 110 (171)
Q Consensus 85 liPim~Wea~tF~~pvla~vl~aS~A 110 (171)
+--+-+.-.+.|+.-|+++++++|.|
T Consensus 16 ~~~~~~~i~~~~~~~v~~i~L~GS~a 41 (125)
T d1knya2 16 VHEIKERILDKYGDDVKAIGVYGSLG 41 (125)
T ss_dssp HHHHHHHHHHHHGGGEEEEEEEHHHH
T ss_pred HHHHHHHHHHHhCcceEEEEEECccc
Confidence 33444556677888999999999987
No 9
>d2gsqa1 a.45.1.1 (A:76-202) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]}
Probab=6.66 E-value=83 Score=19.11 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=6.1
Q ss_pred HHHHHHHhhcC
Q 030796 160 RIQVCIIAKID 170 (171)
Q Consensus 160 rI~~WL~~~~~ 170 (171)
.|++|+++||+
T Consensus 114 ~vk~yl~~rp~ 124 (127)
T d2gsqa1 114 KIAAYLKKRPV 124 (127)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHHCCC
Confidence 34566666653
No 10
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=5.45 E-value=3.2e+02 Score=16.28 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=14.3
Q ss_pred hhHHHHHHhHHHHHHHHHhh
Q 030796 149 LPYFIGSHFLHRIQVCIIAK 168 (171)
Q Consensus 149 LPyfIG~lF~~rI~~WL~~~ 168 (171)
+-+++.+..++.++++++|+
T Consensus 14 i~~~i~~~i~~~~~~~~~~~ 33 (86)
T d2vv5a3 14 VGLIIARMISNAVNRLMISR 33 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45677777777777777764
Done!