BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030798
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DQS|A Chain A, Crystal Structure Of Dehydroquinate Synthase (Dhqs)
Complexed With Carbaphosphonate, Nad+ And Zn2+
pdb|1DQS|B Chain B, Crystal Structure Of Dehydroquinate Synthase (Dhqs)
Complexed With Carbaphosphonate, Nad+ And Zn2+
pdb|1NR5|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+, Nad And Carbaphosphonate
pdb|1NR5|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+, Nad And Carbaphosphonate
pdb|1NRX|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NRX|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NUA|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+
pdb|1NUA|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+
pdb|1NVA|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Adp
pdb|1NVA|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Adp
pdb|1NVB|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVB|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVD|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVD|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVE|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVE|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVE|C Chain C, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVE|D Chain D, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVF|A Chain A, Crystal Structure Of 3-dehydroquinate Synthase (dhqs) In
Complex With Zn2+, Adp And Carbaphosphonate
pdb|1NVF|B Chain B, Crystal Structure Of 3-dehydroquinate Synthase (dhqs) In
Complex With Zn2+, Adp And Carbaphosphonate
pdb|1NVF|C Chain C, Crystal Structure Of 3-dehydroquinate Synthase (dhqs) In
Complex With Zn2+, Adp And Carbaphosphonate
pdb|1SG6|A Chain A, Crystal Structure Of Aspergillus Nidulans 3-Dehydroquinate
Synthase (Andhqs) In Complex With Zn2+ And Nad+, At 1.7d
pdb|1SG6|B Chain B, Crystal Structure Of Aspergillus Nidulans 3-Dehydroquinate
Synthase (Andhqs) In Complex With Zn2+ And Nad+, At 1.7d
Length = 393
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 74 VWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYER 125
V + C T + LVT I ++ ++R +TP P + IY R
Sbjct: 26 VAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNR 77
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 28.5 bits (62), Expect = 2.1, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 69 ILPSGVWLPFMQW----CGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYE 124
+ P+ VW + + C R LF + +I Q+ V ST + + T KP +S
Sbjct: 568 VFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPC 627
Query: 125 REKYLCK 131
+ +C+
Sbjct: 628 KNNGMCR 634
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 28.5 bits (62), Expect = 2.1, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 69 ILPSGVWLPFMQW----CGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYE 124
+ P+ VW + + C R LF + +I Q+ V ST + + T KP +S
Sbjct: 568 VFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPC 627
Query: 125 REKYLCK 131
+ +C+
Sbjct: 628 KNNGMCR 634
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 28.5 bits (62), Expect = 2.1, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 69 ILPSGVWLPFMQW----CGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYE 124
+ P+ VW + + C R LF + +I Q+ V ST + + T KP +S
Sbjct: 343 VFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPC 402
Query: 125 REKYLCK 131
+ +C+
Sbjct: 403 KNNGMCR 409
>pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
Length = 287
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 68 GILPSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHS----TISYRSTWGNVTPKPSISIY 123
G LPS +P +Q C F VT + +Q HY + + + ++ G S +Y
Sbjct: 203 GRLPS---IPXVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQAIALQSEEVY 259
Query: 124 ER-EKYL 129
ER KYL
Sbjct: 260 ERYXKYL 266
>pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KP9|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KPH|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
Length = 287
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 68 GILPSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHS----TISYRSTWGNVTPKPSISIY 123
G LPS +P +Q C F VT + +Q HY + + + ++ G S +Y
Sbjct: 203 GRLPS---IPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQAIALQSEEVY 259
Query: 124 ER-EKYL 129
ER KYL
Sbjct: 260 ERYMKYL 266
>pdb|4ES4|A Chain A, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|C Chain C, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|E Chain E, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|G Chain G, Crystal Structure Of Ydiv And Flhd Complex
Length = 237
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 111 WGNVTPKPSISIYEREKYLCKFLCWPPFQLL 141
W N+TP+ + + ER+ Y + L +P +LL
Sbjct: 83 WLNLTPQVATLLLERDNYAGELLKYPFIELL 113
>pdb|3TLQ|A Chain A, Crystal Structure Of Eal-Like Domain Protein Ydiv
pdb|3TLQ|B Chain B, Crystal Structure Of Eal-Like Domain Protein Ydiv
Length = 242
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 111 WGNVTPKPSISIYEREKYLCKFLCWPPFQLL 141
W N+TP+ + + ER+ Y + L +P +LL
Sbjct: 88 WLNLTPQVATLLLERDNYAGELLKYPFIELL 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.140 0.474
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,899,625
Number of Sequences: 62578
Number of extensions: 177544
Number of successful extensions: 347
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 8
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.1 bits)