Query 030798
Match_columns 171
No_of_seqs 106 out of 371
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 07:04:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wqb_A Aptotoxin VII; spider'S 18.0 42 0.0014 18.9 0.9 15 143-157 18-32 (32)
2 1x5v_A PCFK1; inhibitory cysti 12.5 83 0.0028 18.0 1.2 15 143-157 18-32 (34)
3 3q8j_A Asteropsin A, ABU8-1; c 10.3 69 0.0024 18.6 0.3 13 145-157 1-13 (37)
4 1rmk_A MU-O-conotoxin mrvib; b 8.8 79 0.0027 18.0 0.2 13 142-154 18-30 (31)
5 2a1i_A DNA excision repair pro 6.8 76 0.0026 24.2 -0.7 17 104-121 112-128 (146)
6 2ki9_A Cannabinoid receptor 2; 6.8 71 0.0024 17.2 -0.7 10 132-141 16-25 (33)
7 3fze_A Protein STE5; alpha/bet 5.5 3E+02 0.01 21.9 2.0 17 9-25 35-51 (196)
8 2ll1_A U1-TRTX-SP1A; toxin; NM 5.4 2.3E+02 0.008 15.9 1.0 14 142-155 18-31 (33)
9 1j2r_A Hypothetical isochorism 5.2 1.5E+02 0.0051 22.2 0.1 23 147-170 138-160 (199)
10 2e2f_A Diapausin; Ca-channel b 5.2 1.6E+02 0.0053 17.7 0.2 8 78-85 7-14 (41)
No 1
>1wqb_A Aptotoxin VII; spider'S venom, cystein framework, cystine knot motif; NMR {Synthetic}
Probab=17.95 E-value=42 Score=18.93 Aligned_cols=15 Identities=53% Similarity=1.119 Sum_probs=12.8
Q ss_pred cCCCceeeeeeeehh
Q 030798 143 CCPGCICDVSICLDQ 157 (171)
Q Consensus 143 ~~~g~~~~~~~~~~~ 157 (171)
||.|--|+++-|-.|
T Consensus 18 ccsglkcdgsechpq 32 (32)
T 1wqb_A 18 CCSGLKCDGSECHPQ 32 (32)
T ss_dssp BCTTCEESSSBEECC
T ss_pred cccCccccCcccCCC
Confidence 899999999998654
No 2
>1x5v_A PCFK1; inhibitory cystine knot, toxin; HET: HSL; NMR {Psalmopoeus cambridgei}
Probab=12.49 E-value=83 Score=18.04 Aligned_cols=15 Identities=47% Similarity=1.088 Sum_probs=13.6
Q ss_pred cCCCceeeeeeeehh
Q 030798 143 CCPGCICDVSICLDQ 157 (171)
Q Consensus 143 ~~~g~~~~~~~~~~~ 157 (171)
||.|--|.-+.||-|
T Consensus 18 cc~glqcryg~clvq 32 (34)
T 1x5v_A 18 CCRGLQCRYGKCLVQ 32 (34)
T ss_dssp BCTTEEEETEEEEEC
T ss_pred cceeeeeccCcEEEE
Confidence 899999999999976
No 3
>3q8j_A Asteropsin A, ABU8-1; cystine knot, marine sponge, marine knottin, toxin; HET: PCA; 0.87A {Asteropus}
Probab=10.35 E-value=69 Score=18.59 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=10.7
Q ss_pred CCceeeeeeeehh
Q 030798 145 PGCICDVSICLDQ 157 (171)
Q Consensus 145 ~g~~~~~~~~~~~ 157 (171)
+||-+|.++|--|
T Consensus 1 egcafegescnvq 13 (37)
T 3q8j_A 1 EGCAFEGESCNVQ 13 (37)
T ss_dssp CCCBCTTSEEETT
T ss_pred CCceecCcccceE
Confidence 5899999999765
No 4
>1rmk_A MU-O-conotoxin mrvib; beta sheet, cystine knot; NMR {Conus marmoreus} SCOP: g.3.6.1
Probab=8.84 E-value=79 Score=17.96 Aligned_cols=13 Identities=54% Similarity=1.525 Sum_probs=10.1
Q ss_pred ccCCCceeeeeee
Q 030798 142 QCCPGCICDVSIC 154 (171)
Q Consensus 142 ~~~~g~~~~~~~~ 154 (171)
-+|+|-+|....|
T Consensus 18 ~CC~GLIC~~~~C 30 (31)
T 1rmk_A 18 YCCPGLICGPFVC 30 (31)
T ss_dssp EESTTCCBCSSSB
T ss_pred EecCCceEeeEEe
Confidence 4788888887766
No 5
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=6.78 E-value=76 Score=24.20 Aligned_cols=17 Identities=6% Similarity=0.065 Sum_probs=14.2
Q ss_pred hhhhhhhhhcchhhhhhh
Q 030798 104 TISYRSTWGNVTPKPSIS 121 (171)
Q Consensus 104 ~~~ll~aWSitEpiiRYs 121 (171)
=.++++|||.-| .-||.
T Consensus 112 ~~TLiLawS~eE-aa~Yl 128 (146)
T 2a1i_A 112 DCTLILAWSPEE-AGRYL 128 (146)
T ss_dssp TCEEEEESSHHH-HHHHH
T ss_pred CCEEEEECCHHH-HHHHH
Confidence 456889999999 99984
No 6
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=6.78 E-value=71 Score=17.22 Aligned_cols=10 Identities=40% Similarity=1.185 Sum_probs=7.4
Q ss_pred eecccccccc
Q 030798 132 FLCWPPFQLL 141 (171)
Q Consensus 132 ~l~W~~~~~l 141 (171)
.++|.||+..
T Consensus 16 ~icW~P~~i~ 25 (33)
T 2ki9_A 16 LICWFPVLAL 25 (33)
T ss_dssp TTTSSHHHHH
T ss_pred HHHHhHHHHH
Confidence 4688888765
No 7
>3fze_A Protein STE5; alpha/beta/alpha, VWA-like fold (SCOP), cytoplasm, pheromone response, phosphoprotein, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 4f2h_A
Probab=5.46 E-value=3e+02 Score=21.91 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.7
Q ss_pred hhhHhHHHHHHHHHHHH
Q 030798 9 KLYLFGYNSLQAAGWIV 25 (171)
Q Consensus 9 ~~YL~~YN~~q~~gW~~ 25 (171)
+-|+.+||.+.++-|=+
T Consensus 35 ~~~~~i~NslkAL~~Kf 51 (196)
T 3fze_A 35 DSLIVVYNSLKALTIKF 51 (196)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred CcEEeehHHHHHHHhcc
Confidence 57999999999999854
No 8
>2ll1_A U1-TRTX-SP1A; toxin; NMR {Theraphosidae}
Probab=5.45 E-value=2.3e+02 Score=15.91 Aligned_cols=14 Identities=43% Similarity=1.129 Sum_probs=11.3
Q ss_pred ccCCCceeeeeeee
Q 030798 142 QCCPGCICDVSICL 155 (171)
Q Consensus 142 ~~~~g~~~~~~~~~ 155 (171)
-||+|--|.-+-||
T Consensus 18 tcciglqcrygkcl 31 (33)
T 2ll1_A 18 TCCIGLQCRYGKCL 31 (33)
T ss_dssp SBCTTEEEETTEEE
T ss_pred eeEEeeEeecceEe
Confidence 37889888888876
No 9
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3
Probab=5.22 E-value=1.5e+02 Score=22.21 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=17.7
Q ss_pred ceeeeeeeehhhhhhhHhhhCccC
Q 030798 147 CICDVSICLDQTLLTYAQATGFKT 170 (171)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~ 170 (171)
|+++..+|.++|.+. |...||+.
T Consensus 138 ~G~~T~~CV~~Ta~d-a~~~Gy~v 160 (199)
T 1j2r_A 138 CGISTNIGVESTARN-AWELGFNL 160 (199)
T ss_dssp EEECTTTHHHHHHHH-HHHTTCEE
T ss_pred EeeeccHHHHHHHHH-HHHCCCEE
Confidence 577888999999988 55567763
No 10
>2e2f_A Diapausin; Ca-channel blocker, antifungal peptide, structural genomics, antifungal protein; NMR {Gastrophysa atrocyanea}
Probab=5.18 E-value=1.6e+02 Score=17.66 Aligned_cols=8 Identities=38% Similarity=0.430 Sum_probs=5.6
Q ss_pred hHhhhhce
Q 030798 78 FMQWCGRT 85 (171)
Q Consensus 78 ~~QV~sRl 85 (171)
-=||+||+
T Consensus 7 cdqvcsri 14 (41)
T 2e2f_A 7 CDQVCPRI 14 (41)
T ss_dssp HHHSTTSC
T ss_pred hhhcccCc
Confidence 34888886
Done!