Query 030798
Match_columns 171
No_of_seqs 106 out of 371
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 07:04:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030798.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030798hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dlqa4 g.37.1.1 (A:8-34) GLI- 9.9 70 0.0051 16.1 1.6 16 2-17 6-21 (27)
2 d1emxa_ g.3.6.2 (A:) Heteropda 9.8 37 0.0027 17.7 0.4 8 143-150 16-23 (30)
3 d1iapa_ a.91.1.1 (A:) p115RhoG 8.1 62 0.0045 23.8 1.3 22 149-170 169-190 (190)
4 d1rmka_ g.3.6.1 (A:) Conotoxin 7.9 43 0.0031 17.5 0.2 14 141-154 17-30 (31)
5 d1v7fa_ g.3.6.2 (A:) Phrixotox 7.3 67 0.0049 16.5 0.8 9 142-150 14-22 (29)
6 d2a1ia1 c.52.1.20 (A:99-227) D 6.7 36 0.0026 23.7 -0.7 17 104-121 95-111 (129)
7 d1rzhh2 f.23.10.1 (H:11-35) Ph 6.5 1.8E+02 0.013 14.4 3.0 21 17-37 2-23 (26)
8 d1eysh2 f.23.10.1 (H:7-43) Pho 6.4 1.5E+02 0.011 16.1 2.0 23 16-38 4-27 (37)
9 d1rqja_ a.128.1.1 (A:) Farnesy 5.0 1.6E+02 0.012 21.8 2.3 16 52-67 65-80 (299)
10 d1ftra1 d.58.33.1 (A:1-148) Fo 4.9 99 0.0072 21.8 0.8 10 144-153 47-56 (148)
No 1
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.91 E-value=70 Score=16.15 Aligned_cols=16 Identities=31% Similarity=0.289 Sum_probs=12.7
Q ss_pred CCCCCcchhhHhHHHH
Q 030798 2 AHQRQPIKLYLFGYNS 17 (171)
Q Consensus 2 ~~~~~l~~~YL~~YN~ 17 (171)
-||+-++|-||-..|-
T Consensus 6 c~k~f~skyylkvhnr 21 (27)
T d2dlqa4 6 CHKKFLSKYYLKVHNR 21 (27)
T ss_dssp TCCCCSSHHHHHHHHH
T ss_pred hHHHHHHhHhhhhccc
Confidence 3788888999988873
No 2
>d1emxa_ g.3.6.2 (A:) Heteropdatoxin 2, hptx2 {Giant crab spider (Heteropoda venatoria) [TaxId: 152925]}
Probab=9.80 E-value=37 Score=17.72 Aligned_cols=8 Identities=50% Similarity=1.784 Sum_probs=5.8
Q ss_pred cCCCceee
Q 030798 143 CCPGCICD 150 (171)
Q Consensus 143 ~~~g~~~~ 150 (171)
+|+|.+|.
T Consensus 16 cceg~vcr 23 (30)
T d1emxa_ 16 CCEGYVCR 23 (30)
T ss_dssp CCTTBCCS
T ss_pred hhhhhhhh
Confidence 67887774
No 3
>d1iapa_ a.91.1.1 (A:) p115RhoGEF {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.08 E-value=62 Score=23.84 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=17.0
Q ss_pred eeeeeeehhhhhhhHhhhCccC
Q 030798 149 CDVSICLDQTLLTYAQATGFKT 170 (171)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~ 170 (171)
.|-+.-++..+.||||-.|.||
T Consensus 169 edrs~ai~~al~tymk~~Gvk~ 190 (190)
T d1iapa_ 169 EEKSAAVVNAIGLYMRHLGVRT 190 (190)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC
T ss_pred chhhHHHHHHHHHHHHHhCcCC
Confidence 3445566778899999999887
No 4
>d1rmka_ g.3.6.1 (A:) Conotoxin {Marble cone (Conus marmoreus), mrVIb [TaxId: 42752]}
Probab=7.89 E-value=43 Score=17.46 Aligned_cols=14 Identities=50% Similarity=1.459 Sum_probs=10.2
Q ss_pred cccCCCceeeeeee
Q 030798 141 LQCCPGCICDVSIC 154 (171)
Q Consensus 141 l~~~~g~~~~~~~~ 154 (171)
.-||||-+|.--+|
T Consensus 17 iyccpglicgpfvc 30 (31)
T d1rmka_ 17 VYCCPGLICGPFVC 30 (31)
T ss_dssp CEESTTCCBCSSSB
T ss_pred eeeCCCccccceee
Confidence 34789988876665
No 5
>d1v7fa_ g.3.6.2 (A:) Phrixotoxin 1 (PaTX1) {Chilean copper tarantula (Phrixotrichus auratus) [TaxId: 269635]}
Probab=7.35 E-value=67 Score=16.49 Aligned_cols=9 Identities=44% Similarity=1.604 Sum_probs=6.9
Q ss_pred ccCCCceee
Q 030798 142 QCCPGCICD 150 (171)
Q Consensus 142 ~~~~g~~~~ 150 (171)
-+|+|-.|+
T Consensus 14 kccegl~c~ 22 (29)
T d1v7fa_ 14 KCCEGLVCR 22 (29)
T ss_dssp CBCTTCEES
T ss_pred hhhcccchh
Confidence 378888886
No 6
>d2a1ia1 c.52.1.20 (A:99-227) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.71 E-value=36 Score=23.69 Aligned_cols=17 Identities=6% Similarity=0.065 Sum_probs=14.2
Q ss_pred hhhhhhhhhcchhhhhhh
Q 030798 104 TISYRSTWGNVTPKPSIS 121 (171)
Q Consensus 104 ~~~ll~aWSitEpiiRYs 121 (171)
=.++++|||.-| .-||.
T Consensus 95 ~~TLilaws~eE-aa~Yl 111 (129)
T d2a1ia1 95 DCTLILAWSPEE-AGRYL 111 (129)
T ss_dssp TCEEEEESSHHH-HHHHH
T ss_pred CCEEEEEcCHHH-HHHHH
Confidence 456889999999 99984
No 7
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.52 E-value=1.8e+02 Score=14.42 Aligned_cols=21 Identities=19% Similarity=0.012 Sum_probs=12.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHhc
Q 030798 17 SLQAAGWIV-AIFMLLSNLLST 37 (171)
Q Consensus 17 ~~q~~gW~~-iL~~~i~~~l~~ 37 (171)
.++.+.|++ +++..+..++++
T Consensus 2 laslaiw~fw~ffalli~ylqt 23 (26)
T d1rzhh2 2 LASLAIYSFWIFLAGLIYYLQT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 356677765 566666555553
No 8
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=6.45 E-value=1.5e+02 Score=16.12 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=13.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhcC
Q 030798 16 NSLQAAGWIV-AIFMLLSNLLSTK 38 (171)
Q Consensus 16 N~~q~~gW~~-iL~~~i~~~l~~g 38 (171)
+++|.+.|++ +++..+..+++..
T Consensus 4 D~Aql~ly~Fw~FFagLi~YL~rE 27 (37)
T d1eysh2 4 DAAQITIWAFWLFFFGLIIYLRRE 27 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777766 4555555555543
No 9
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=5.03 E-value=1.6e+02 Score=21.81 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhhhc
Q 030798 52 WILQTAAFLEVVHGAV 67 (171)
Q Consensus 52 ~~~Qt~AvLEIlHsa~ 67 (171)
...+.++.+|.+|++.
T Consensus 65 ~~~~~A~aiEllH~as 80 (299)
T d1rqja_ 65 TLDAPAAAVECIHAYS 80 (299)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4567899999999885
No 10
>d1ftra1 d.58.33.1 (A:1-148) Formylmethanofuran:tetrahydromethanopterin formyltransferase {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=4.95 E-value=99 Score=21.83 Aligned_cols=10 Identities=20% Similarity=0.351 Sum_probs=8.0
Q ss_pred CCCceeeeee
Q 030798 144 CPGCICDVSI 153 (171)
Q Consensus 144 ~~g~~~~~~~ 153 (171)
-+||.||++|
T Consensus 47 VIgC~~EAGI 56 (148)
T d1ftra1 47 VIMCPAEAGI 56 (148)
T ss_dssp TTTSSCEEEE
T ss_pred eeccccccce
Confidence 4689999887
Done!