Your job contains 1 sequence.
>030800
MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP
NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR
QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINEG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030800
(171 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2082309 - symbol:AT3G01800 species:3702 "Arabi... 732 2.0e-72 1
TIGR_CMR|GSU_1918 - symbol:GSU_1918 "ribosome recycling f... 318 1.5e-28 1
TIGR_CMR|CHY_1784 - symbol:CHY_1784 "ribosome recycling f... 317 1.9e-28 1
TIGR_CMR|DET_0374 - symbol:DET_0374 "ribosome recycling f... 309 1.3e-27 1
TIGR_CMR|BA_3962 - symbol:BA_3962 "ribosome recycling fac... 303 5.7e-27 1
UNIPROTKB|P66734 - symbol:frr "Ribosome-recycling factor"... 295 4.0e-26 1
DICTYBASE|DDB_G0268518 - symbol:DDB_G0268518 "Ribosome-re... 289 1.8e-25 1
TIGR_CMR|SO_1632 - symbol:SO_1632 "ribosome recycling fac... 285 4.6e-25 1
TAIR|locus:2077254 - symbol:RRF ""ribosome recycling fact... 278 2.6e-24 1
TIGR_CMR|CJE_0285 - symbol:CJE_0285 "ribosome recycling f... 277 3.3e-24 1
TIGR_CMR|SPO_1664 - symbol:SPO_1664 "ribosome recycling f... 274 6.8e-24 1
TIGR_CMR|CPS_1556 - symbol:CPS_1556 "ribosome recycling f... 269 2.3e-23 1
TIGR_CMR|VC_2257 - symbol:VC_2257 "ribosome recycling fac... 269 2.3e-23 1
UNIPROTKB|P0A805 - symbol:frr "ribosome recycling factor"... 268 2.9e-23 1
TIGR_CMR|CBU_1383 - symbol:CBU_1383 "ribosome recycling f... 251 1.9e-21 1
ZFIN|ZDB-GENE-040704-12 - symbol:mrrf "mitochondrial ribo... 245 8.0e-21 1
UNIPROTKB|E1BQ58 - symbol:MRRF "Uncharacterized protein" ... 238 4.4e-20 1
TIGR_CMR|ECH_0267 - symbol:ECH_0267 "ribosome recycling f... 236 7.2e-20 1
TIGR_CMR|NSE_0945 - symbol:NSE_0945 "ribosome recycling f... 223 1.7e-18 1
MGI|MGI:1915121 - symbol:Mrrf "mitochondrial ribosome rec... 220 3.6e-18 1
UNIPROTKB|Q0VCQ4 - symbol:MRRF "Ribosome-recycling factor... 219 4.6e-18 1
RGD|1305897 - symbol:Mrrf "mitochondrial ribosome recycli... 216 9.5e-18 1
UNIPROTKB|J9P265 - symbol:MRRF "Uncharacterized protein" ... 212 2.5e-17 1
UNIPROTKB|Q96E11 - symbol:MRRF "Ribosome-recycling factor... 211 3.2e-17 1
TIGR_CMR|APH_0112 - symbol:APH_0112 "ribosome recycling f... 208 6.7e-17 1
UNIPROTKB|F1SLQ7 - symbol:LOC100515005 "Uncharacterized p... 207 8.6e-17 1
FB|FBgn0035980 - symbol:CG4447 species:7227 "Drosophila m... 176 1.6e-13 1
UNIPROTKB|Q4TT42 - symbol:MRRFP1 "Protein MRRFP1" species... 156 3.3e-11 1
ASPGD|ASPL0000049715 - symbol:AN10205 species:162425 "Eme... 132 1.7e-08 1
UNIPROTKB|G3X7D8 - symbol:MRRF "Ribosome-recycling factor... 111 1.3e-06 1
SGD|S000001080 - symbol:RRF1 "Mitochondrial ribosome recy... 120 2.3e-06 1
CGD|CAL0005804 - symbol:orf19.477 species:5476 "Candida a... 107 0.00029 1
UNIPROTKB|Q5A6S7 - symbol:RRF1 "Potential mitochondrial r... 107 0.00029 1
>TAIR|locus:2082309 [details] [associations]
symbol:AT3G01800 species:3702 "Arabidopsis thaliana"
[GO:0005739 "mitochondrion" evidence=ISM;IDA] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0006626 "protein targeting to
mitochondrion" evidence=RCA] [GO:0019408 "dolichol biosynthetic
process" evidence=RCA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0005739 EMBL:CP002686 GO:GO:0006412 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982 EMBL:BT010432
EMBL:AK176317 EMBL:AK220929 IPI:IPI00527773 RefSeq:NP_186829.3
UniGene:At.43211 ProteinModelPortal:Q6NQM0 SMR:Q6NQM0 STRING:Q6NQM0
PRIDE:Q6NQM0 EnsemblPlants:AT3G01800.1 GeneID:821076
KEGG:ath:AT3G01800 TAIR:At3g01800 InParanoid:Q6NQM0 OMA:SMKSIEH
PhylomeDB:Q6NQM0 ProtClustDB:CLSN2680816 Genevestigator:Q6NQM0
Uniprot:Q6NQM0
Length = 267
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 141/170 (82%), Positives = 163/170 (95%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
MEAAI ALSR+LTKLRTGRA+PGMLDHI+VETGGVKMPLNHLA+VSVLD KTLS+NPYDP
Sbjct: 97 MEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDP 156
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+T+KELE AIV+SPLGLNP++DGQRL+A+IPALTKEHIQAMCK+V K+SE VKQSIRR+R
Sbjct: 157 DTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRAR 216
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
QKALD +KKAGSSLPKD++KRLEKEVDELTKK+VKSA+D+CK+KEKEI E
Sbjct: 217 QKALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEITE 266
>TIGR_CMR|GSU_1918 [details] [associations]
symbol:GSU_1918 "ribosome recycling factor" species:243231
"Geobacter sulfurreducens PCA" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:AE017180
GenomeReviews:AE017180_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 RefSeq:NP_952967.1 ProteinModelPortal:P61304
GeneID:2685328 KEGG:gsu:GSU1918 PATRIC:22026701
BioCyc:GSUL243231:GH27-1975-MONOMER Uniprot:P61304
Length = 185
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 67/172 (38%), Positives = 108/172 (62%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ +L RE K+RTGRA+ G+LD I V+ G PLN +A ++V + +T++I P++
Sbjct: 13 MEKSVESLRREYQKVRTGRANTGLLDEIRVDFYGNPSPLNQVATLAVPEPRTITIQPWET 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+++ LG P DG+ + ++P LT+E + + K + KT+ED K +IR R
Sbjct: 73 KMIPVIEKAILNANLGFTPSNDGKLIRISLPPLTEERRKEIVKSLKKTAEDAKIAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A+D +KK + +D +KR EKEV ++T YV D+V KEKE+ E
Sbjct: 133 RDAIDGLKKLEKDKKISEDDLKRAEKEVQDVTNVYVAKVDEVLAHKEKEVME 184
>TIGR_CMR|CHY_1784 [details] [associations]
symbol:CHY_1784 "ribosome recycling factor" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006412
"translation" evidence=ISS] [GO:0008135 "translation factor
activity, nucleic acid binding" evidence=ISS] HAMAP:MF_00040
InterPro:IPR002661 Pfam:PF01765 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
RefSeq:YP_360604.1 ProteinModelPortal:Q3AB80 SMR:Q3AB80
STRING:Q3AB80 GeneID:3728266 KEGG:chy:CHY_1784 PATRIC:21276679
BioCyc:CHYD246194:GJCN-1783-MONOMER Uniprot:Q3AB80
Length = 185
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 67/170 (39%), Positives = 104/170 (61%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L +E +R GRA+P +L+ ++VE G +MP+N LA +S + + L I P+D
Sbjct: 13 MQKAIEVLKKEFATMRVGRATPALLEKVVVEYYGTQMPVNQLATISAPEPRLLVIQPWDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI+ S LG+ P DG + AIP LT+E Q + KV K +E+ + +IR R
Sbjct: 73 GALGAIEKAILKSDLGITPTNDGSVIRLAIPPLTQERRQELVKVARKKAEEARVAIRNIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ A D +K + + +D+ KR + EV +LT K++K+ D++ KAKE EI
Sbjct: 133 RDANDRIKDLEKDKVISEDEGKRGQDEVQKLTDKFIKTVDELLKAKEDEI 182
>TIGR_CMR|DET_0374 [details] [associations]
symbol:DET_0374 "ribosome recycling factor" species:243164
"Dehalococcoides ethenogenes 195" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:CP000027
GenomeReviews:CP000027_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 RefSeq:YP_181120.1 ProteinModelPortal:Q3Z9H9
STRING:Q3Z9H9 GeneID:3230312 KEGG:det:DET0374 PATRIC:21607817
BioCyc:DETH243164:GJNF-374-MONOMER Uniprot:Q3Z9H9
Length = 185
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 66/172 (38%), Positives = 107/172 (62%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A++ LS+EL+ +RTGR+SP +++HI VE GV P+NHLA ++ D + ++I P+D
Sbjct: 13 MAASLDVLSQELSGIRTGRSSPALVEHIKVEYAGVPTPINHLASIAAPDPRYITIQPWDR 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LGL P DG + IP L++E Q M K+V+K E+ K ++R R
Sbjct: 73 SCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVSKRLEEDKIAMRNVR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A+D MKK S + +D +KR ++ ++T ++ AD + KE E+ +
Sbjct: 133 RDAMDEMKKLEKSKEISQDDLKRGSDQLQKITDSFIAKADKLGADKETELKQ 184
>TIGR_CMR|BA_3962 [details] [associations]
symbol:BA_3962 "ribosome recycling factor" species:198094
"Bacillus anthracis str. Ames" [GO:0006415 "translational
termination" evidence=ISS] [GO:0008135 "translation factor
activity, nucleic acid binding" evidence=ISS] HAMAP:MF_00040
InterPro:IPR002661 Pfam:PF01765 GO:GO:0005737 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
OMA:VMVEYYG RefSeq:NP_846205.1 RefSeq:YP_020601.1
RefSeq:YP_029926.1 PDB:4GFQ PDBsum:4GFQ ProteinModelPortal:Q81WL1
SMR:Q81WL1 DNASU:1086824 EnsemblBacteria:EBBACT00000008993
EnsemblBacteria:EBBACT00000015628 EnsemblBacteria:EBBACT00000020750
GeneID:1086824 GeneID:2819578 GeneID:2850618 KEGG:ban:BA_3962
KEGG:bar:GBAA_3962 KEGG:bat:BAS3675 ProtClustDB:PRK00083
BioCyc:BANT260799:GJAJ-3733-MONOMER
BioCyc:BANT261594:GJ7F-3850-MONOMER Uniprot:Q81WL1
Length = 185
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 65/172 (37%), Positives = 103/172 (59%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRAS +LD + V+ G P+ LA ++V +++ L I PYD
Sbjct: 13 MEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI+ + LGLNP DG + A PALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ D +KK + +D ++ +++ + T KY+ D++ K KEKEI E
Sbjct: 133 RDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184
>UNIPROTKB|P66734 [details] [associations]
symbol:frr "Ribosome-recycling factor" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0006415
"translational termination" evidence=IDA] [GO:0008079 "translation
termination factor activity" evidence=IDA] [GO:0040007 "growth"
evidence=IMP] HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765
GO:GO:0005886 GO:GO:0005737 GO:GO:0040007 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842581 GO:GO:0008079 eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 PIR:E70924 RefSeq:NP_217398.1
RefSeq:NP_337460.1 RefSeq:YP_006516334.1 PDB:1WQF PDB:1WQG PDB:1WQH
PDBsum:1WQF PDBsum:1WQG PDBsum:1WQH ProteinModelPortal:P66734
SMR:P66734 PRIDE:P66734 EnsemblBacteria:EBMYCT00000002392
EnsemblBacteria:EBMYCT00000072289 GeneID:13317674 GeneID:887464
GeneID:925331 KEGG:mtc:MT2949 KEGG:mtu:Rv2882c KEGG:mtv:RVBD_2882c
PATRIC:18128256 TubercuList:Rv2882c EvolutionaryTrace:P66734
Uniprot:P66734
Length = 185
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 62/173 (35%), Positives = 105/173 (60%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L+ +RTGRA+PGM I ++ G P+ LA ++V +++ + I PY+
Sbjct: 13 MEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEA 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N L+ +E+AI +S LG+NP DG + A+P LT+E + + K E+ K S+R R
Sbjct: 73 NQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+KA++ + +K G + +D++ R EK++D+ T +YV D++ K KE E+ E
Sbjct: 133 RKAMEELHRIRKEGEA-GEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELLE 184
>DICTYBASE|DDB_G0268518 [details] [associations]
symbol:DDB_G0268518 "Ribosome-recycling factor,
mitochondrial" species:44689 "Dictyostelium discoideum" [GO:0006412
"translation" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR002661 dictyBase:DDB_G0268518
Pfam:PF01765 GO:GO:0006412 EMBL:AAFI02000003 eggNOG:COG0233
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
RefSeq:XP_647294.1 ProteinModelPortal:Q55G90 STRING:Q55G90
EnsemblProtists:DDB0216552 GeneID:8616100 KEGG:ddi:DDB_G0268518
InParanoid:Q55G90 OMA:IKQVNTI ProtClustDB:CLSZ2846946
Uniprot:Q55G90
Length = 263
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 65/168 (38%), Positives = 99/168 (58%)
Query: 2 EAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPN 61
+ I +SREL +R GR P +L+ I VET + L H+A++++ DS TL+I YD +
Sbjct: 96 DKTIEYVSRELGNIRFGRVGPELLERINVETPSGNLLLPHMAMITIKDSLTLNITLYDSS 155
Query: 62 TLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQ 121
L +E A+ +S LGLNP+ + ++P T++ Q + K V SED K SIRR R+
Sbjct: 156 LLSNVERALTNSGLGLNPQTFDTTIRVSLPKPTQDLRQKLIKQVNTISEDAKVSIRRHRK 215
Query: 122 KALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEIN 169
+D++K+ L KD K LEK + ++T Y+KS + + K KEIN
Sbjct: 216 DGMDILKRY--KLTKDDEKTLEKNIQKITDDYIKSITKITETKLKEIN 261
>TIGR_CMR|SO_1632 [details] [associations]
symbol:SO_1632 "ribosome recycling factor" species:211586
"Shewanella oneidensis MR-1" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 RefSeq:NP_717243.1 ProteinModelPortal:Q8EGH2
SMR:Q8EGH2 GeneID:1169426 KEGG:son:SO_1632 PATRIC:23522898
Uniprot:Q8EGH2
Length = 185
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 65/172 (37%), Positives = 98/172 (56%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M + A ++ K+RTGRA P +LD I V G PLN +A V V D++TLS+ +D
Sbjct: 13 MGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDARTLSVTVFDR 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++ +E AI+SS LGLNP G L +PALT+E + KVV +E + +IR R
Sbjct: 73 SAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRVAIRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A+ +KK +D ++R E EV + T ++K D++ AKE E+ E
Sbjct: 133 RDAISDVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEILAAKEIELME 184
>TAIR|locus:2077254 [details] [associations]
symbol:RRF ""ribosome recycling factor, chloroplast
precursor"" species:3702 "Arabidopsis thaliana" [GO:0006412
"translation" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0042742
"defense response to bacterium" evidence=IEP] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009817 "defense response to
fungus, incompatible interaction" evidence=IDA] [GO:0005507 "copper
ion binding" evidence=IDA] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0032544 "plastid translation" evidence=IMP] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0009073 "aromatic amino
acid family biosynthetic process" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0016226
"iron-sulfur cluster assembly" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0019408 "dolichol
biosynthetic process" evidence=RCA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0042742
GO:GO:0005507 GO:GO:0009658 GO:GO:0009817 GO:GO:0009790
GO:GO:0009579 GO:GO:0032544 EMBL:AL138648 eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982 EMBL:AF372883
EMBL:AY056778 EMBL:AY092982 EMBL:BT002678 IPI:IPI00545948
RefSeq:NP_567141.1 UniGene:At.19134 ProteinModelPortal:Q9M1X0
SMR:Q9M1X0 STRING:Q9M1X0 PaxDb:Q9M1X0 PRIDE:Q9M1X0 ProMEX:Q9M1X0
EnsemblPlants:AT3G63190.1 GeneID:825494 KEGG:ath:AT3G63190
TAIR:At3g63190 HOGENOM:HOG000040143 InParanoid:Q9M1X0 OMA:TREHRES
PhylomeDB:Q9M1X0 ProtClustDB:CLSN2917503 Genevestigator:Q9M1X0
GermOnline:AT3G63190 TIGRFAMs:TIGR00496 Uniprot:Q9M1X0
Length = 275
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 64/171 (37%), Positives = 99/171 (57%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME I L +RTGR++ MLD I VE G + L +A +S D +L + PYD
Sbjct: 103 MEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDK 162
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
++LK +E AIV+S LG+ P DG + ++P LT + + + KVVAK SE+ K ++IR
Sbjct: 163 SSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIR 222
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
R K+ D ++K L +D +K L ++ +L Y+K +++ K KEKE+
Sbjct: 223 RDALKSYDKLEKE-KKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKEL 272
>TIGR_CMR|CJE_0285 [details] [associations]
symbol:CJE_0285 "ribosome recycling factor" species:195099
"Campylobacter jejuni RM1221" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:CP000025
GenomeReviews:CP000025_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 RefSeq:YP_178307.1 ProteinModelPortal:Q5HWM8
STRING:Q5HWM8 GeneID:3231047 KEGG:cjr:CJE0285 PATRIC:20042268
BioCyc:CJEJ195099:GJC0-290-MONOMER Uniprot:Q5HWM8
Length = 185
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 61/169 (36%), Positives = 95/169 (56%)
Query: 2 EAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPN 61
E ++ AL ++ T LRTG+ + +LDHI V+ G + PLN +A V D+ T+SI P++
Sbjct: 14 EKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLASDASTISITPWEKP 73
Query: 62 TLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQ 121
LK +ESAI ++ +G+NP DG+ + P +T+E + K E K SIR R+
Sbjct: 74 LLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKAMGEKAKVSIRNIRK 133
Query: 122 KALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
A D +KK ++ +D+ K+ EV +LT Y D+ K KE E+
Sbjct: 134 DANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDESVKNKESEL 182
>TIGR_CMR|SPO_1664 [details] [associations]
symbol:SPO_1664 "ribosome recycling factor" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006412 "translation" evidence=ISS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765
GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
OMA:VMVEYYG ProtClustDB:PRK00083 RefSeq:YP_166903.1
ProteinModelPortal:Q5LSV2 GeneID:3193529 KEGG:sil:SPO1664
PATRIC:23376653 Uniprot:Q5LSV2
Length = 187
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 61/169 (36%), Positives = 97/169 (57%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ L E LRTGRAS ML+ I VE G P+N + V+V + + ++IN +D
Sbjct: 16 MDGAMANLKTEFASLRTGRASGSMLEPIQVEAYGQMTPINQIGTVNVPEPRMVTINVWDK 75
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI S LG+NP+++G ++ IP L +E + + KV + +E + +IR R
Sbjct: 76 SMVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELTKVAGQYAEHARVAIRNVR 135
Query: 121 QKALDMMKKA-GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ +D +KKA + +D K E EV ELT K +K D + K+ EI
Sbjct: 136 RDGMDQIKKAKADGISEDDQKFWEAEVQELTDKMIKVVDAALETKQAEI 184
>TIGR_CMR|CPS_1556 [details] [associations]
symbol:CPS_1556 "ribosome recycling factor" species:167879
"Colwellia psychrerythraea 34H" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:CP000083
GenomeReviews:CP000083_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
RefSeq:YP_268298.1 ProteinModelPortal:Q485G7 SMR:Q485G7
STRING:Q485G7 GeneID:3518539 KEGG:cps:CPS_1556 PATRIC:21466319
BioCyc:CPSY167879:GI48-1637-MONOMER Uniprot:Q485G7
Length = 185
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 64/172 (37%), Positives = 97/172 (56%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I AL LTK+RTGRA +LD+I+VE G+ PLN + VSV D++ LSI +D
Sbjct: 13 MGKSIEALKTSLTKIRTGRAHASLLDNIVVEYYGMDTPLNQVGNVSVPDARNLSITVFDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI+ S LGLNP+ +G + +P LT+E + + KVV +E K +IR R
Sbjct: 73 SMISAVEKAIMKSDLGLNPQSNGTLIRIPLPPLTEERRKDLVKVVRGEAEGGKVAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A K + +D + E + ++T +VK D+V KE E+ E
Sbjct: 133 RDANSDFKSLLKEKEISEDDHHQAEDSIQKITDVFVKQVDEVLVKKEAELME 184
>TIGR_CMR|VC_2257 [details] [associations]
symbol:VC_2257 "ribosome recycling factor" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006417 "regulation of
translation" evidence=ISS] [GO:0045182 "translation regulator
activity" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
TIGRFAMs:TIGR00496 OMA:VMVEYYG ProtClustDB:PRK00083 PIR:G82099
RefSeq:NP_231888.1 ProteinModelPortal:Q9KPV5 SMR:Q9KPV5
GeneID:2613179 KEGG:vch:VC2257 PATRIC:20083557 Uniprot:Q9KPV5
Length = 185
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 63/172 (36%), Positives = 99/172 (57%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ AL L+K+RTGRA P +L I V+ G PLN +A V D++TL+I +D
Sbjct: 13 MEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAITVFDR 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++E AI+ S LGLNP G + +P LT+E + + K+V +E + ++R R
Sbjct: 73 ELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRVAVRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A + +K + +D +R ++E+ +LT VK DDV AKEKE+ E
Sbjct: 133 RDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDVLAAKEKELME 184
>UNIPROTKB|P0A805 [details] [associations]
symbol:frr "ribosome recycling factor" species:83333
"Escherichia coli K-12" [GO:0043022 "ribosome binding"
evidence=IDA] [GO:0032790 "ribosome disassembly" evidence=IMP]
[GO:0006412 "translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0043022 EMBL:U70214
GO:GO:0032790 EMBL:D13334 PDB:2RDO PDBsum:2RDO eggNOG:COG0233
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 EMBL:J05113 EMBL:M69029 PIR:A34495
RefSeq:NP_414714.1 RefSeq:YP_488474.1 PDB:1EK8 PDB:1ISE PDB:1ZN0
PDB:1ZN1 PDB:4GAS PDB:4GD1 PDBsum:1EK8 PDBsum:1ISE PDBsum:1ZN0
PDBsum:1ZN1 PDBsum:4GAS PDBsum:4GD1 ProteinModelPortal:P0A805
SMR:P0A805 DIP:DIP-48120N IntAct:P0A805 MINT:MINT-1308979
SWISS-2DPAGE:P0A805 PaxDb:P0A805 PRIDE:P0A805
EnsemblBacteria:EBESCT00000001100 EnsemblBacteria:EBESCT00000016070
GeneID:12930756 GeneID:946122 KEGG:ecj:Y75_p0168 KEGG:eco:b0172
PATRIC:32115453 EchoBASE:EB0331 EcoGene:EG10335
BioCyc:EcoCyc:EG10335-MONOMER BioCyc:ECOL316407:JW0167-MONOMER
EvolutionaryTrace:P0A805 Genevestigator:P0A805 Uniprot:P0A805
Length = 185
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 60/170 (35%), Positives = 96/170 (56%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ + A +++K+RTGRASP +LD I+VE G PL LA V+V DS+TL IN +D
Sbjct: 13 MDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDR 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI++S LGLNP G + +P LT+E + + K+V +E + ++R R
Sbjct: 73 SMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ A D +K + +D +R + +V +LT +K + KE E+
Sbjct: 133 RDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAEL 182
>TIGR_CMR|CBU_1383 [details] [associations]
symbol:CBU_1383 "ribosome recycling factor" species:227377
"Coxiella burnetii RSA 493" [GO:0006412 "translation" evidence=ISS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765
GO:GO:0005737 GO:GO:0006412 EMBL:AE016828 GenomeReviews:AE016828_GR
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
OMA:VMVEYYG ProtClustDB:PRK00083 RefSeq:NP_820372.1
ProteinModelPortal:Q83BV4 SMR:Q83BV4 PRIDE:Q83BV4 GeneID:1209289
KEGG:cbu:CBU_1383 PATRIC:17931511
BioCyc:CBUR227377:GJ7S-1371-MONOMER Uniprot:Q83BV4
Length = 185
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 54/170 (31%), Positives = 99/170 (58%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ +L EL KLRT RA P +L+HI V+ V+ PL+ +A +++ + +TLSI P++
Sbjct: 13 MEKSLGSLKTELAKLRTCRAHPSLLEHIKVDYYNVETPLSQVASIAIENPRTLSITPWEK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + +E AI + LGLNP G + +P LT+E + + +VV + +E + +IR R
Sbjct: 73 NMVGPIEKAIQKADLGLNPATVGMVIRVPLPPLTEERRKELARVVREEAEHARVAIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
++A + +K+ + +D+ +R + + +LT + D + KE ++
Sbjct: 133 REANNDLKELMKEKEISEDEERRAQTAIQKLTDAQIAEVDKMASQKEADL 182
>ZFIN|ZDB-GENE-040704-12 [details] [associations]
symbol:mrrf "mitochondrial ribosome recycling
factor" species:7955 "Danio rerio" [GO:0006412 "translation"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR002661
InterPro:IPR016000 Pfam:PF01765 ZFIN:ZDB-GENE-040704-12
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 CTD:92399 HOGENOM:HOG000007351 HOVERGEN:HBG061516
OrthoDB:EOG4QRH4V PANTHER:PTHR20982:SF4 EMBL:BC074048
IPI:IPI00513547 RefSeq:NP_001002174.1 UniGene:Dr.84906
ProteinModelPortal:Q6GMJ7 SMR:Q6GMJ7 STRING:Q6GMJ7 GeneID:431721
KEGG:dre:431721 InParanoid:Q6GMJ7 NextBio:20830957
ArrayExpress:Q6GMJ7 Uniprot:Q6GMJ7
Length = 257
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 53/169 (31%), Positives = 89/169 (52%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYD- 59
M A + AL + ++ + R SPG LDHI V T K PLN L +S+ + L +N
Sbjct: 87 MAAVLAALKDDFSRNLSVRTSPGALDHITVTTKDGKFPLNQLGQISMKSPQLLVVNMTGF 146
Query: 60 PNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRS 119
P + + A+ S +GLNP V+G + +P +T+EH + + K+ + S K S+RR
Sbjct: 147 PEAMVAVTRALRESSMGLNPEVEGTIIRVPVPKVTREHRENLVKLAKQFSNKSKDSLRRV 206
Query: 120 RQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
R A+ +KK+ ++ D + +EK++ ++T + D K KE+
Sbjct: 207 RSNAISQVKKSKDAVSDDTIHLIEKQIQQMTDSFTADIDKQLATKTKEL 255
>UNIPROTKB|E1BQ58 [details] [associations]
symbol:MRRF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006412 "translation" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR002661 InterPro:IPR016000
Pfam:PF01765 GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40
InterPro:IPR024946 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 OMA:TREHRES CTD:92399
GeneTree:ENSGT00390000005084 PANTHER:PTHR20982:SF4
EMBL:AADN02026362 IPI:IPI00572512 RefSeq:XP_003642346.1
RefSeq:XP_415395.1 UniGene:Gga.7262 Ensembl:ENSGALT00000002038
GeneID:417110 KEGG:gga:417110 NextBio:20820466 Uniprot:E1BQ58
Length = 259
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 52/169 (30%), Positives = 90/169 (53%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYD- 59
M+A + AL + + R S G LDHIIV T K PLN L +S + + +N
Sbjct: 89 MQAVVEALKEDFNRNLNVRTSQGALDHIIVTTKDGKFPLNQLGQISQKSPQLIVVNMTSF 148
Query: 60 PNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRS 119
P + AI S + LNP VDG + +P +T+EH +++ K+ +++ K+++R+
Sbjct: 149 PESTAAAMKAIRESGMNLNPEVDGTLIRVPVPKVTREHRESLAKLAKQSTNKSKEALRKV 208
Query: 120 RQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
R K+++ +KK S + +D + LEK++ ++ D + AK KE+
Sbjct: 209 RSKSVNQVKKFKSKVSEDTIWLLEKQIQQMADSAAAEMDKLLAAKTKEL 257
>TIGR_CMR|ECH_0267 [details] [associations]
symbol:ECH_0267 "ribosome recycling factor" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0008135
"translation factor activity, nucleic acid binding" evidence=ISS]
HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765 GO:GO:0005737
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
ProtClustDB:PRK00083 RefSeq:YP_507088.1 ProteinModelPortal:Q2GHJ5
STRING:Q2GHJ5 GeneID:3927666 KEGG:ech:ECH_0267 PATRIC:20576051
OMA:CEATTIR BioCyc:ECHA205920:GJNR-267-MONOMER Uniprot:Q2GHJ5
Length = 185
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 53/170 (31%), Positives = 98/170 (57%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ ++ +RTGRA +L+ I+VET G ++ LN ++ VSV D+KTL I +D
Sbjct: 13 MEKSLSVYLSDIDGIRTGRARTSVLNGIVVETYGGRVKLNTISSVSVSDNKTLMIKVWDS 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N + +++AI++S LG + + +P +T++ + + K++ K SED + SIR R
Sbjct: 73 NNIGAIKTAIMNSNLGFGISCEATTIRLTVPDMTQDMRKNLVKLLGKISEDCRVSIRNIR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ +D +K S + +D ++ E+ ++T +K +D +KEKE+
Sbjct: 133 RDIMDRLKVMQDSKEISEDDLRVAGVEIQKITDDIMKKVNDAFTSKEKEL 182
>TIGR_CMR|NSE_0945 [details] [associations]
symbol:NSE_0945 "ribosome recycling factor" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0008135
"translation factor activity, nucleic acid binding" evidence=ISS]
HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765 GO:GO:0005737
GO:GO:0006412 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
OMA:VMVEYYG RefSeq:YP_506809.1 ProteinModelPortal:Q2GCI7
STRING:Q2GCI7 PRIDE:Q2GCI7 GeneID:3931454 KEGG:nse:NSE_0945
PATRIC:22681869 ProtClustDB:CLSK2527749
BioCyc:NSEN222891:GHFU-947-MONOMER Uniprot:Q2GCI7
Length = 185
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 54/165 (32%), Positives = 96/165 (58%)
Query: 6 VALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKE 65
V LS +L +R+G S +LD +IV T K+ LN +A +SV+++K LS+ +D +T+
Sbjct: 19 VFLS-DLKGIRSGSLSVSILDGVIVSTHMGKLRLNQVASLSVVNNKMLSVQVWDKSTVGA 77
Query: 66 LESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALD 125
++ AI++S LG+NP V+G L +P LT+E + + KV+ K + K ++R R+ A+
Sbjct: 78 VKDAILTSNLGMNPIVEGSVLRLPVPDLTEERRKELVKVLKKYGDRAKVAVRNIRRDAIS 137
Query: 126 MMK--KAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+K + + ++ M L K++D++ + DD KE +I
Sbjct: 138 RIKVLEKAKEISENDMHALLKKIDKIISEEDARIDDAVSKKETDI 182
>MGI|MGI:1915121 [details] [associations]
symbol:Mrrf "mitochondrial ribosome recycling factor"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006412
"translation" evidence=IEA] [GO:0032790 "ribosome disassembly"
evidence=ISO] InterPro:IPR002661 Pfam:PF01765 MGI:MGI:1915121
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 OMA:TREHRES CTD:92399 HOGENOM:HOG000007351
HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V GeneTree:ENSGT00390000005084
EMBL:AK010018 EMBL:AK032371 EMBL:BX293557 EMBL:BC019787
IPI:IPI00109501 RefSeq:NP_080698.1 UniGene:Mm.378232 PDB:1WIH
PDBsum:1WIH ProteinModelPortal:Q9D6S7 SMR:Q9D6S7 STRING:Q9D6S7
PaxDb:Q9D6S7 PRIDE:Q9D6S7 Ensembl:ENSMUST00000028250 GeneID:67871
KEGG:mmu:67871 UCSC:uc008jlj.2 InParanoid:B1B055
EvolutionaryTrace:Q9D6S7 NextBio:325787 Bgee:Q9D6S7 CleanEx:MM_MRRF
Genevestigator:Q9D6S7 GermOnline:ENSMUSG00000026887 Uniprot:Q9D6S7
Length = 262
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 48/169 (28%), Positives = 86/169 (50%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYD- 59
M++ + AL K R +PG LDHI V T K+ LN + +S+ + + +N
Sbjct: 92 MKSVVEALKDNFNKTLNIRTAPGSLDHITVVTADGKVALNQIGQISMKSPQVILVNMASF 151
Query: 60 PNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRS 119
P AI S + LNP V+G + IP +T+EH + + K+ + + K+++R+
Sbjct: 152 PECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNTNKAKENLRKV 211
Query: 120 RQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
R A++ +KK+ +D ++ +EK++ ++ V D AK KE+
Sbjct: 212 RTNAMNKLKKSKDKTSEDTIRLIEKQISQMADDTVAELDQHLAAKTKEL 260
>UNIPROTKB|Q0VCQ4 [details] [associations]
symbol:MRRF "Ribosome-recycling factor, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002661
Pfam:PF01765 GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40
InterPro:IPR024946 eggNOG:COG0233 KO:K02838 InterPro:IPR023584
SUPFAM:SSF55194 PANTHER:PTHR20982 EMBL:BC120054 IPI:IPI00714526
RefSeq:NP_001069775.1 UniGene:Bt.21335 ProteinModelPortal:Q0VCQ4
SMR:Q0VCQ4 STRING:Q0VCQ4 PRIDE:Q0VCQ4 GeneID:614013 KEGG:bta:614013
CTD:92399 HOGENOM:HOG000007351 HOVERGEN:HBG061516 InParanoid:Q0VCQ4
OrthoDB:EOG4QRH4V NextBio:20898894 Uniprot:Q0VCQ4
Length = 262
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 50/169 (29%), Positives = 86/169 (50%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYD- 59
M++ I AL K R SPG LD+I V T K+PLN ++ +S+ + + +N
Sbjct: 92 MKSVIEALKDNFNKTVNIRTSPGALDNITVVTADGKLPLNQISQISMKSPQLILVNMASF 151
Query: 60 PNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRS 119
P AI S + LNP V+G + IP +T+EH + + K+ + + K S+R+
Sbjct: 152 PECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNTNKAKDSLRKV 211
Query: 120 RQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
R A++ +KK+ +D ++ +EK++ ++ V D K KE+
Sbjct: 212 RTNAINKVKKSKDKASEDTIRLIEKQISQMADDTVAELDRHLAVKTKEL 260
>RGD|1305897 [details] [associations]
symbol:Mrrf "mitochondrial ribosome recycling factor"
species:10116 "Rattus norvegicus" [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006412 "translation" evidence=IEA]
[GO:0032790 "ribosome disassembly" evidence=ISO] InterPro:IPR002661
Pfam:PF01765 RGD:1305897 GO:GO:0005739 GO:GO:0006412
Gene3D:3.30.1360.40 InterPro:IPR024946 eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982 OMA:TREHRES
CTD:92399 HOGENOM:HOG000007351 HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V
GeneTree:ENSGT00390000005084 EMBL:BC085779 IPI:IPI00372124
RefSeq:NP_001008355.1 UniGene:Rn.105234 ProteinModelPortal:Q5RKI9
SMR:Q5RKI9 STRING:Q5RKI9 PhosphoSite:Q5RKI9 PRIDE:Q5RKI9
Ensembl:ENSRNOT00000033047 GeneID:311903 KEGG:rno:311903
UCSC:RGD:1305897 InParanoid:Q5RKI9 NextBio:664438
Genevestigator:Q5RKI9 GermOnline:ENSRNOG00000025997 Uniprot:Q5RKI9
Length = 262
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 48/169 (28%), Positives = 86/169 (50%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYD- 59
M++ + AL K R +PG LDHI V T K+ LN + +S+ + + +N
Sbjct: 92 MKSVMEALKDNFNKTLNIRTAPGSLDHITVVTADGKLALNQIGQISMKSPQLILVNMASF 151
Query: 60 PNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRS 119
P AI S + LNP V+G + IP +T+EH + + K+ + + K+++R+
Sbjct: 152 PECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMLVKLAKQNTNKAKENLRKV 211
Query: 120 RQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
R A++ +KK+ +D ++ +EK++ ++ V D AK KE+
Sbjct: 212 RTNAMNKLKKSKDKTSEDTIRLIEKQISQMADDTVAELDRHLAAKTKEL 260
>UNIPROTKB|J9P265 [details] [associations]
symbol:MRRF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
InterPro:IPR002661 Pfam:PF01765 GO:GO:0006412 Gene3D:3.30.1360.40
InterPro:IPR024946 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 OMA:TREHRES CTD:92399
GeneTree:ENSGT00390000005084 EMBL:AAEX03006907 RefSeq:XP_537859.2
ProteinModelPortal:J9P265 Ensembl:ENSCAFT00000043300 GeneID:480739
KEGG:cfa:480739 Uniprot:J9P265
Length = 262
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 49/169 (28%), Positives = 84/169 (49%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYD- 59
M++ + AL K + R SPG LD I V T K+ LN + +S+ + +N
Sbjct: 92 MKSVMEALKDNFNKTISIRTSPGSLDRITVVTANGKLALNQIGQISMKSPHLILVNMASF 151
Query: 60 PNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRS 119
P AI S + LNP V+G + IP +T+EH + M K+ + + K S+R+
Sbjct: 152 PECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTREHREMMVKLAKQNTNKAKDSLRKV 211
Query: 120 RQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
R A++ +KK+ + +D ++ +EK++ ++ V D K KE+
Sbjct: 212 RTNAMNKLKKSKDKVSEDTIRLIEKQISQMADDTVAELDRHLAVKTKEL 260
>UNIPROTKB|Q96E11 [details] [associations]
symbol:MRRF "Ribosome-recycling factor, mitochondrial"
species:9606 "Homo sapiens" [GO:0006412 "translation" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0032790 "ribosome
disassembly" evidence=IDA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0005739 GO:GO:0006412 EMBL:CH471090 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0032790 EMBL:AL162424 eggNOG:COG0233
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
CTD:92399 HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V EMBL:AK291603
EMBL:AK298046 EMBL:AK291809 EMBL:AK292790 EMBL:AK300718
EMBL:AK316266 EMBL:BC013049 EMBL:BC053604 IPI:IPI00030596
IPI:IPI00061108 IPI:IPI00412392 IPI:IPI00514034 IPI:IPI00555800
IPI:IPI00556454 IPI:IPI00556600 RefSeq:NP_001166983.1
RefSeq:NP_620132.1 RefSeq:NP_954646.1 UniGene:Hs.368011
ProteinModelPortal:Q96E11 SMR:Q96E11 IntAct:Q96E11 STRING:Q96E11
PhosphoSite:Q96E11 DMDM:62901043 PaxDb:Q96E11 PRIDE:Q96E11
DNASU:92399 Ensembl:ENST00000297908 Ensembl:ENST00000344641
Ensembl:ENST00000373723 Ensembl:ENST00000373724
Ensembl:ENST00000373727 Ensembl:ENST00000373728
Ensembl:ENST00000373729 Ensembl:ENST00000373730
Ensembl:ENST00000394315 Ensembl:ENST00000441707
Ensembl:ENST00000467864 Ensembl:ENST00000470366
Ensembl:ENST00000489572 Ensembl:ENST00000546115 GeneID:92399
KEGG:hsa:92399 UCSC:uc010mwa.3 UCSC:uc011lyq.2 UCSC:uc022bmy.1
GeneCards:GC09P125026 HGNC:HGNC:7234 MIM:604602 neXtProt:NX_Q96E11
PharmGKB:PA31029 InParanoid:Q96E11 OMA:VMVEYYG PhylomeDB:Q96E11
GenomeRNAi:92399 NextBio:77750 Bgee:Q96E11 Genevestigator:Q96E11
GermOnline:ENSG00000148187 Uniprot:Q96E11
Length = 262
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 48/169 (28%), Positives = 86/169 (50%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYD- 59
M++ I AL K R SPG LD I V T K+ LN ++ +S+ + + +N
Sbjct: 92 MKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASF 151
Query: 60 PNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRS 119
P AI S + LNP V+G + IP +T+EH + + K+ + + K S+R+
Sbjct: 152 PECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKV 211
Query: 120 RQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
R +++ +KK+ ++ +D ++ +EK++ ++ V D K KE+
Sbjct: 212 RTNSMNKLKKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLAVKTKEL 260
>TIGR_CMR|APH_0112 [details] [associations]
symbol:APH_0112 "ribosome recycling factor" species:212042
"Anaplasma phagocytophilum HZ" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] InterPro:IPR002661 Pfam:PF01765
GO:GO:0006412 EMBL:CP000235 GenomeReviews:CP000235_GR
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
ProtClustDB:PRK00083 OMA:CEATTIR RefSeq:YP_504740.1
ProteinModelPortal:Q2GLL1 STRING:Q2GLL1 GeneID:3930282
KEGG:aph:APH_0112 PATRIC:20948788
BioCyc:APHA212042:GHPM-147-MONOMER Uniprot:Q2GLL1
Length = 184
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 49/170 (28%), Positives = 92/170 (54%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +++ +RTGR S +LD I V G K+ LN ++ +SV + +TL ++ +D
Sbjct: 14 MDKTYAMFLNDISGIRTGRVSASLLDGISVSYYGNKVKLNTVSSISV-NGRTLLVSLWDA 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L E++SAI +S +G + + +P LT + + + K++ K +E+ K SIR R
Sbjct: 73 SILGEVKSAIEASNMGFGMTCESSTVRLVVPELTNDVRKNLVKMLNKLAEESKVSIRNIR 132
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ A++ +K + +D M + E+ ++T ++K D +KE EI
Sbjct: 133 RDAIERLKSLQDNKEISEDDMHGVSAEIQKITDSFIKKIADAYTSKESEI 182
>UNIPROTKB|F1SLQ7 [details] [associations]
symbol:LOC100515005 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
OMA:TREHRES GeneTree:ENSGT00390000005084 EMBL:CU041257
RefSeq:XP_003480647.1 Ensembl:ENSSSCT00000006083 GeneID:100515005
KEGG:ssc:100515005 Uniprot:F1SLQ7
Length = 262
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 48/169 (28%), Positives = 84/169 (49%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYD- 59
M++ I AL K R SPG LD I V T K+ LN + +S+ + + +N
Sbjct: 92 MKSVIEALKDNFNKTVNIRTSPGSLDQITVVTADGKLALNQIGQISMKSPQLILVNMASF 151
Query: 60 PNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRS 119
P AI S + LNP V+G + IP +T+EH + + K+ + + K+S+R+
Sbjct: 152 PECTAAAIKAIRESGMNLNPDVEGTLIRVPIPKVTREHREMLVKLAKQNTNKAKESLRKV 211
Query: 120 RQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
R A++ +KK+ +D ++ +EK++ ++ V + K KE+
Sbjct: 212 RTNAMNKLKKSKDKASEDTLRLIEKQISQMADDTVAELERHLAVKTKEL 260
>FB|FBgn0035980 [details] [associations]
symbol:CG4447 species:7227 "Drosophila melanogaster"
[GO:0006412 "translation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR002661 InterPro:IPR016000 Pfam:PF01765
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
eggNOG:COG0233 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
EMBL:AY069172 ProteinModelPortal:Q8T0M6 SMR:Q8T0M6 STRING:Q8T0M6
PaxDb:Q8T0M6 PRIDE:Q8T0M6 FlyBase:FBgn0035980 InParanoid:Q8T0M6
OrthoDB:EOG4H9W2V ArrayExpress:Q8T0M6 Bgee:Q8T0M6
PANTHER:PTHR20982:SF4 Uniprot:Q8T0M6
Length = 254
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 43/169 (25%), Positives = 85/169 (50%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYD- 59
M+ +++ + + K + ++ G +D + ++ G + L LA +S + KT+ +N
Sbjct: 84 MQKSVMQMKEDFVKHLSLPSTSGAIDTLRIKVDGQEHELQELAQISRKNPKTIIVNMIGF 143
Query: 60 PNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRS 119
P T+ ++ AI S + LNP+ DG L IP +TKEH + + K + +IR
Sbjct: 144 PQTIPDVLKAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRENLSKNAKALFVKYRDAIRGV 203
Query: 120 RQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ + + +KK L KD + +V + +++ AD + +K+KE+
Sbjct: 204 QNEHIRKLKKQ-PELGKDDAFAAQAQVTAIADRFISEADKLLASKQKEL 251
>UNIPROTKB|Q4TT42 [details] [associations]
symbol:MRRFP1 "Protein MRRFP1" species:9606 "Homo sapiens"
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002661
Pfam:PF01765 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
EMBL:Z83848 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000007351 HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V
IPI:IPI00176976 SMR:Q4TT42 STRING:Q4TT42 Ensembl:ENST00000435941
HGNC:HGNC:35238 OMA:IREHREM Uniprot:Q4TT42
Length = 262
Score = 156 (60.0 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 43/169 (25%), Positives = 77/169 (45%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYD- 59
M++ I A K SPG LD I V T K+ LN + +SV + + +N
Sbjct: 92 MKSVIEARKDNFNKTLNIGTSPGSLDKIAVVTADGKLALNQIRQISVKLPQLILVNMASF 151
Query: 60 PNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRS 119
P AI S + LNP V+G + IP + +EH + + K+ + + S+R+
Sbjct: 152 PEFTVAAIKAIRESGMNLNPEVEGTLIRVPIPQVIREHREMLVKLAKQNTNKATYSLRKV 211
Query: 120 RQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
A++ +KK+ ++ + ++ EK++ ++ V K KE+
Sbjct: 212 CTNAMNKLKKSKDTVSEGTIRLTEKQISQMADDTVAELYRHLAVKTKEL 260
>ASPGD|ASPL0000049715 [details] [associations]
symbol:AN10205 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032543 "mitochondrial
translation" evidence=IEA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0006412 EMBL:BN001307 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 EnsemblFungi:CADANIAT00008013
HOGENOM:HOG000157011 OMA:AQVVPKG Uniprot:C8VLW3
Length = 255
Score = 132 (51.5 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 51/173 (29%), Positives = 80/173 (46%)
Query: 4 AIVALSRELTKLRTG-RASPGMLDHIIVETG-GVKMP--LNHLAVVSVLDSKTLSINPYD 59
A+ L ELTKLRTG R P ++ + V+ G K L LA V + +++ +
Sbjct: 79 AVSRLKDELTKLRTGGRLCPETIESLRVQLSKGTKETARLGDLAQVVPKGGRMVAVLVSE 138
Query: 60 PNTLKELESAIVSSPLGLNPRVDGQ---RLIAAIPALTKEHIQAMCKVVAKTSEDVKQSI 116
+ +K + SAI++S L L P+ D +L IP TKE E ++
Sbjct: 139 ESYMKPISSAILASNLSLTPQQDPHNALQLNIPIPPPTKESRDQTVLAAKAAMERAASNV 198
Query: 117 RRSR---QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEK 166
R +R K L M K + P D K +K +++LT+K K D+ + +K
Sbjct: 199 RETRGIVHKRLQEMIKKKIARPDDARKAQDK-MEKLTEKGQKEVKDLFEVAKK 250
>UNIPROTKB|G3X7D8 [details] [associations]
symbol:MRRF "Ribosome-recycling factor, mitochondrial"
species:9913 "Bos taurus" [GO:0006412 "translation" evidence=IEA]
InterPro:IPR002661 Pfam:PF01765 GO:GO:0006412 InterPro:IPR023584
SUPFAM:SSF55194 PANTHER:PTHR20982 GeneTree:ENSGT00390000005084
EMBL:DAAA02032027 Ensembl:ENSBTAT00000024516 Uniprot:G3X7D8
Length = 84
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 20/79 (25%), Positives = 43/79 (54%)
Query: 90 IPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDEL 149
+P +T+EH + + K+ + + K S+R+ R A++ +KK+ +D ++ +EK++ ++
Sbjct: 4 VPGVTREHREMLVKLAKQNTNKAKDSLRKVRTNAINKVKKSKDKASEDTIRLIEKQISQM 63
Query: 150 TKKYVKSADDVCKAKEKEI 168
V D K KE+
Sbjct: 64 ADDTVAELDRHLAVKTKEL 82
>SGD|S000001080 [details] [associations]
symbol:RRF1 "Mitochondrial ribosome recycling factor"
species:4932 "Saccharomyces cerevisiae" [GO:0006412 "translation"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0032543 "mitochondrial translation" evidence=IMP] [GO:0003747
"translation release factor activity" evidence=ISO]
InterPro:IPR002661 InterPro:IPR015999 SGD:S000001080 Pfam:PF01765
GO:GO:0005739 EMBL:BK006934 EMBL:U00062 GO:GO:0032543 GO:GO:0003747
eggNOG:COG0233 KO:K02838 OrthoDB:EOG418FZ7 InterPro:IPR023584
SUPFAM:SSF55194 EMBL:AB016033 PIR:S46737 RefSeq:NP_011903.1
ProteinModelPortal:P38771 SMR:P38771 DIP:DIP-1693N IntAct:P38771
MINT:MINT-407253 STRING:P38771 PaxDb:P38771 EnsemblFungi:YHR038W
GeneID:856433 KEGG:sce:YHR038W CYGD:YHR038w HOGENOM:HOG000094410
OMA:PNNDGEV NextBio:982027 Genevestigator:P38771 GermOnline:YHR038W
PANTHER:PTHR20982 PANTHER:PTHR20982:SF1 Uniprot:P38771
Length = 230
Score = 120 (47.3 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 36/164 (21%), Positives = 78/164 (47%)
Query: 10 RELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESA 69
+++ +++ G +P + + ++ + +A S+ L I +DP +K + S
Sbjct: 68 QKMNEIKQGNFNPKVFNSLVFKNN---RKFTDIATTSLKGKNALLITVFDPKDVKTVISG 124
Query: 70 IVSSPLGLNP-RVDGQ--RLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKAL-- 124
++++ L L P RV +L ++P T E + K + + E+ KQS + +
Sbjct: 125 VLAANLNLTPERVPNNDLQLKVSLPPPTTESRLKVAKDLKRVFEEYKQSSLKDSLGTIRG 184
Query: 125 DMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
++K+ S D +++ E+++++L K YV D + EK I
Sbjct: 185 SILKEFKSFKKDDAVRKAERDLEKLHKDYVNKLHDQFQKVEKSI 228
>CGD|CAL0005804 [details] [associations]
symbol:orf19.477 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0032543 "mitochondrial translation" evidence=IEA]
InterPro:IPR002661 InterPro:IPR015999 CGD:CAL0005804 Pfam:PF01765
GO:GO:0005739 GO:GO:0006412 EMBL:AACQ01000055 EMBL:AACQ01000054
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
HOGENOM:HOG000094410 PANTHER:PTHR20982 PANTHER:PTHR20982:SF1
RefSeq:XP_717340.1 RefSeq:XP_717430.1 STRING:Q5A6S7 GeneID:3640880
GeneID:3640960 KEGG:cal:CaO19.477 KEGG:cal:CaO19.8108
Uniprot:Q5A6S7
Length = 261
Score = 107 (42.7 bits), Expect = 0.00029, P = 0.00029
Identities = 43/173 (24%), Positives = 80/173 (46%)
Query: 9 SRELTKLRTGRASPGMLDHIIVETG--GVK--MPLNHLAVVSVLDSKTLSINPYDPNTLK 64
++ T ++ G+ +P + D++ V G G + +P +A SV + IN +D K
Sbjct: 88 NKAATDIKLGKLNPKIFDNLEVNIGNHGHEELVPFTSVAQTSV-KGRNFIINLFDAGYGK 146
Query: 65 ELESAIVSSPLGLNPRVDGQ---RLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQ 121
+ ++I+ S L ++ +D ++ IP +T E Q K + + E++K + + +
Sbjct: 147 HVINSIIGSGLNMSGTIDPTNKFQIKVPIPNITTETKQENIKQLKEIFENLKNNHKSNSL 206
Query: 122 KAL--DMMKKAGSSLP----KDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ + K SSL D +L K+++ L K YV D K EK I
Sbjct: 207 NYVRSEARNKFQSSLKHNKISDSQHQLLKKLETLHKTYVDKLTDAFKQAEKSI 259
>UNIPROTKB|Q5A6S7 [details] [associations]
symbol:RRF1 "Potential mitochondrial ribosome recycling
factor" species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR002661
InterPro:IPR015999 CGD:CAL0005804 Pfam:PF01765 GO:GO:0005739
GO:GO:0006412 EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0233
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 HOGENOM:HOG000094410
PANTHER:PTHR20982 PANTHER:PTHR20982:SF1 RefSeq:XP_717340.1
RefSeq:XP_717430.1 STRING:Q5A6S7 GeneID:3640880 GeneID:3640960
KEGG:cal:CaO19.477 KEGG:cal:CaO19.8108 Uniprot:Q5A6S7
Length = 261
Score = 107 (42.7 bits), Expect = 0.00029, P = 0.00029
Identities = 43/173 (24%), Positives = 80/173 (46%)
Query: 9 SRELTKLRTGRASPGMLDHIIVETG--GVK--MPLNHLAVVSVLDSKTLSINPYDPNTLK 64
++ T ++ G+ +P + D++ V G G + +P +A SV + IN +D K
Sbjct: 88 NKAATDIKLGKLNPKIFDNLEVNIGNHGHEELVPFTSVAQTSV-KGRNFIINLFDAGYGK 146
Query: 65 ELESAIVSSPLGLNPRVDGQ---RLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQ 121
+ ++I+ S L ++ +D ++ IP +T E Q K + + E++K + + +
Sbjct: 147 HVINSIIGSGLNMSGTIDPTNKFQIKVPIPNITTETKQENIKQLKEIFENLKNNHKSNSL 206
Query: 122 KAL--DMMKKAGSSLP----KDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ + K SSL D +L K+++ L K YV D K EK I
Sbjct: 207 NYVRSEARNKFQSSLKHNKISDSQHQLLKKLETLHKTYVDKLTDAFKQAEKSI 259
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.128 0.341 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 171 171 0.00090 108 3 11 23 0.45 32
31 0.47 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 33
No. of states in DFA: 509 (54 KB)
Total size of DFA: 114 KB (2077 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.73u 0.08s 23.81t Elapsed: 00:00:03
Total cpu time: 23.74u 0.08s 23.82t Elapsed: 00:00:03
Start: Thu May 9 22:01:05 2013 End: Thu May 9 22:01:08 2013