BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030800
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B8DSA1|RRF_DESVM Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain
Miyazaki F / DSM 19637) GN=frr PE=3 SV=1
Length = 186
Score = 133 bits (334), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 111/172 (64%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ +L RE KLRTGRAS ++D+I V+ G P++ LA VSV DS+TL+I P+D
Sbjct: 14 MEKALGSLDREFAKLRTGRASTSLVDNIKVDYYGTPTPISQLASVSVPDSRTLTIQPWDR 73
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + +E AI+ S LGLNP DG+ + +IP LT+E + + KV K +E+ K ++R R
Sbjct: 74 SAFQLVEKAIMKSDLGLNPVNDGKIIRISIPPLTEERRKDLVKVARKYTEEAKVAVRNVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A D +KK G + +D +++ +V +LT ++V +D+ C AKEKEI E
Sbjct: 134 RDANDALKKLEKGKEISEDDVRKSTDDVQKLTDRFVAKSDEKCTAKEKEIME 185
>sp|Q9KA66|RRF_BACHD Ribosome-recycling factor OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=frr PE=3 SV=3
Length = 185
Score = 133 bits (334), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 108/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A AL REL KLR GRA+P MLD I VE G + PLN LA +SV +++ L I P+D
Sbjct: 13 MTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLLVIQPFDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++ ++E AI S LGL P DG + IP LT+E + + K+V K++E+ K ++R R
Sbjct: 73 SSISDIERAIQKSDLGLTPSNDGTVIRITIPPLTEERRRDLTKLVKKSAEEAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A D +KK L +D ++R+ ++V +LT KY++ D +AKEKEI E
Sbjct: 133 RDANDDLKKRQKDGELTEDDLRRVTEDVQKLTDKYIEQIDQKAEAKEKEIME 184
>sp|P81101|RRF_BACSU Ribosome-recycling factor OS=Bacillus subtilis (strain 168) GN=frr
PE=1 SV=2
Length = 185
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI A REL +R GRA+P +LD + VE G + PLN L+ ++V +++ L I PYD
Sbjct: 13 MEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVITPYDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI+ + LGL P DG + AIPALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A D +KK + +D+++ ++V +LT +YV D V K KEKEI E
Sbjct: 133 RDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIME 184
>sp|Q5WFT1|RRF_BACSK Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16)
GN=frr PE=3 SV=1
Length = 185
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI LSREL KLR GRA+P +LD + VE G + PLN LA V+V +++ L I PYD
Sbjct: 13 MDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARLLLITPYDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+ S LGL P DGQ + AIP LT+E + + ++V+KT+E+ K ++R R
Sbjct: 73 TAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSKTAEESKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A D +KK + +D+++ ++ +LT YV D+ K KE+EI E
Sbjct: 133 RDANDELKKLQKDGEMTEDELRSATDDIQKLTDTYVAKIDEKAKQKEQEIIE 184
>sp|Q67PB4|RRF_SYMTH Ribosome-recycling factor OS=Symbiobacterium thermophilum (strain T
/ IAM 14863) GN=frr PE=3 SV=1
Length = 185
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 110/172 (63%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +EL +R RA+P +LD + VE G ++P+N++A + V D +TL I P+D
Sbjct: 13 MKKAVEVFRQELAGMRANRATPALLDKVRVEAYGSEVPVNNVATIEVPDPRTLVIKPWDR 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AI +S LGLNP DGQ + +IP +T+E + + KVVAK +E+ + +IR R
Sbjct: 73 SLIKAIERAINASDLGLNPTNDGQVIRLSIPPMTEERRRELVKVVAKRTEEQRVAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A + +KK ++ +D+ KR + EV +LT KY+K D + AKEKEI E
Sbjct: 133 RDANEQIKKLEKDKAVSEDESKRAQDEVQKLTDKYIKEVDQLMAAKEKEIME 184
>sp|Q895K9|RRF_CLOTE Ribosome-recycling factor OS=Clostridium tetani (strain
Massachusetts / E88) GN=frr PE=3 SV=1
Length = 183
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 103/168 (61%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A++AL ++L L+ GRA+P MLD I E G PL+ LA +SV +++ L I P+D
Sbjct: 13 MSKALLALKKDLASLKAGRANPAMLDKIEAEYYGTMTPLSQLANISVPEARILQIQPWDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++LK +E AI+ S LGLNP DG + IP LT+E + + K V K ED K +IR R
Sbjct: 73 SSLKAIEKAILVSDLGLNPNNDGTIIRLIIPELTEETRRNIVKTVKKYGEDTKIAIRSVR 132
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ D +K S + +D +K+ E+E+ ++T YVK D++ KEKEI
Sbjct: 133 RDGNDKIKDLKSDMSEDDIKKAEEEIQKITDNYVKKVDEMIDIKEKEI 180
>sp|Q97I63|RRF_CLOAB Ribosome-recycling factor OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=frr PE=3 SV=1
Length = 185
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +I AL +ELT ++ GRA+P MLD I V+ G PLN LA +SV +S+ L I P+D
Sbjct: 13 MTKSISALKKELTSMKAGRANPAMLDRIEVDYYGTMTPLNQLANISVPESRVLMIQPWDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K +E AI+ S LGLNP DG + IP LT+E + + K V K ED K ++R R
Sbjct: 73 SAMKSIEKAILISDLGLNPSNDGTTMRLVIPELTEETRKNIVKNVKKAGEDGKVALRAIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ A D +K K +S+ +D+MK E ++ + T YVK D + +AKEKEI
Sbjct: 133 RDANDKVKSLKKDNSITEDEMKSAENDIQKKTDSYVKEIDKMVEAKEKEI 182
>sp|Q3A398|RRF_PELCD Ribosome-recycling factor OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=frr PE=3 SV=1
Length = 185
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ +L +++TK+RTGRAS +LD ++V+ G PLN + ++V + + ++I P++
Sbjct: 13 MDKAVESLKKDMTKVRTGRASTSLLDDVMVDYYGTPTPLNQVGTLAVPEPRLITIQPWEK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L ++E AI + LGLNP DG + IP +T+E + M KVV K ED K +R +R
Sbjct: 73 KLLADIERAIFKADLGLNPTSDGNLIRLVIPPMTEERRKEMGKVVRKMGEDAKVGVRSAR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A D MKK + +D +KR EKE+ ++T YV DD+ KEKEI E
Sbjct: 133 RDANDGMKKLEKNKEISEDDLKRGEKEIQDVTDSYVAKIDDLVSQKEKEIME 184
>sp|A7Z4S3|RRF_BACA2 Ribosome-recycling factor OS=Bacillus amyloliquefaciens (strain
FZB42) GN=frr PE=3 SV=1
Length = 185
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRA+P +LD + VE G + PLN L+ ++V +++ L + PYD
Sbjct: 13 MEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVVTPYDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E AI+ + LG+ P DG + AIPALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ + D +KK + +D+++ ++V +LT +YV D V K KEKEI E
Sbjct: 133 RDSNDDLKKLEKNGDITEDELRASSEDVQKLTDEYVSKIDSVTKDKEKEIME 184
>sp|A4IMC6|RRF_GEOTN Ribosome-recycling factor OS=Geobacillus thermodenitrificans
(strain NG80-2) GN=frr PE=3 SV=1
Length = 185
Score = 127 bits (318), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A SREL +R GRA+ G+L+ + V+ GV P+N LA +SV +++ L I PYD
Sbjct: 13 MDKAVQAFSRELATVRAGRANAGLLEKVTVDYYGVATPINQLATISVPEARMLVIQPYDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +KE+E AI++S LG+ P DG + IP LT+E + + K+V K SE+ K ++R R
Sbjct: 73 SVIKEMEKAILASDLGVTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEEAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A D +KK S + +D+++ EV +LT ++ D + K KEKE+ E
Sbjct: 133 RDANDELKKLEKNSEITEDELRSYTDEVQKLTDSHIAKIDAITKEKEKEVME 184
>sp|Q5L0J9|RRF_GEOKA Ribosome-recycling factor OS=Geobacillus kaustophilus (strain
HTA426) GN=frr PE=3 SV=1
Length = 185
Score = 126 bits (317), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A +REL +R GRA+ G+L+ + V+ GV P+N LA +SV +++ L I PYD
Sbjct: 13 MDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLLVIQPYDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +KE+E AI++S LGL P DG + IP LT+E + + K+V K SED K ++R R
Sbjct: 73 SAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEDAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A D +KK + +D+++ EV +LT ++ D + K KEKE+ E
Sbjct: 133 RDANDELKKLEKNGEITEDELRSYTDEVQKLTDDHIAKIDAITKEKEKEVME 184
>sp|A8FDB6|RRF_BACP2 Ribosome-recycling factor OS=Bacillus pumilus (strain SAFR-032)
GN=frr PE=3 SV=1
Length = 185
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A REL +R GRA+ +LD + V+ G + PLN +A ++V +++ L I PYD
Sbjct: 13 MEKAVQAYGRELATVRAGRANASLLDKVTVDYYGAQTPLNQIASITVPEARMLIITPYDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ ++E +I S LG+ P DG + AIPALT+E + + KVV K SE+ K ++R R
Sbjct: 73 TAIGDIEKSIQKSDLGITPTSDGNVIRIAIPALTEERRKELVKVVRKYSEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A D +KK + +D+++ ++V +LT +YV DDV K KEKEI E
Sbjct: 133 RDANDELKKLEKNGEITEDELRSSTEDVQKLTDEYVAKIDDVMKDKEKEIME 184
>sp|Q313G7|RRF_DESDG Ribosome-recycling factor OS=Desulfovibrio desulfuricans (strain
G20) GN=frr PE=3 SV=1
Length = 184
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ AL RE +LRTGRAS ++D I V+ G P+N LA V+V DS+T++I P+D
Sbjct: 12 MEKAVAALDREFGRLRTGRASTSLVDSIKVDYYGTPTPINQLASVAVPDSRTITIQPWDR 71
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+E AI+ S LGL P DG+ + ++P LT+E + + KV K +ED K ++R R
Sbjct: 72 GAFALVEKAIMQSDLGLTPINDGKIIRISMPPLTEERRKELVKVAKKYTEDAKVAVRNIR 131
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A + +KK ++ +D MKR + EV +LT +V ++ V KEKEI E
Sbjct: 132 RDANEQIKKMEKDKAITEDDMKRGQDEVQKLTDAFVAKSEKVLAKKEKEIME 183
>sp|Q3AB80|RRF_CARHZ Ribosome-recycling factor OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=frr PE=3 SV=1
Length = 185
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 104/170 (61%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI L +E +R GRA+P +L+ ++VE G +MP+N LA +S + + L I P+D
Sbjct: 13 MQKAIEVLKKEFATMRVGRATPALLEKVVVEYYGTQMPVNQLATISAPEPRLLVIQPWDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI+ S LG+ P DG + AIP LT+E Q + KV K +E+ + +IR R
Sbjct: 73 GALGAIEKAILKSDLGITPTNDGSVIRLAIPPLTQERRQELVKVARKKAEEARVAIRNIR 132
Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ A D +K + + +D+ KR + EV +LT K++K+ D++ KAKE EI
Sbjct: 133 RDANDRIKDLEKDKVISEDEGKRGQDEVQKLTDKFIKTVDELLKAKEDEI 182
>sp|A8MHH2|RRF_ALKOO Ribosome-recycling factor OS=Alkaliphilus oremlandii (strain
OhILAs) GN=frr PE=3 SV=1
Length = 185
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I AL EL +R GRA+P MLD I+VE G P+ +A ++ + + +SI PYD
Sbjct: 13 MNKTINALKDELASIRAGRANPAMLDRIVVEYYGSPTPIKQIAAITAPEPRIISIQPYDG 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LG+NP DG+ + +P LT+E + + KV KTSED K +R R
Sbjct: 73 SALSSIEKAILQSDLGVNPSNDGKLIRIIVPQLTEERRKELTKVAKKTSEDAKVVLRNER 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A D +KK + + +D++K + EV ++T K++K D++ + KEK+I E
Sbjct: 133 RNANDRLKKMQKDNEITEDELKTAQDEVQKITDKFIKMVDELTEKKEKDIME 184
>sp|Q2JHW2|RRF_SYNJB Ribosome-recycling factor OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=frr PE=3 SV=1
Length = 182
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ A R +RTGRA+ +LD I VE GV PL LA ++ DS TL I P+DP
Sbjct: 10 MNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSSTLLIQPFDP 69
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+TL +E AIV+S LGL P DG+ + IP LT+E + + K VAK +E+ + SIR R
Sbjct: 70 STLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAKLAEEGRVSIRNIR 129
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ +D ++K L +D+ K L+ ++ +LT +Y+K D++ KEKE+
Sbjct: 130 RDGIDSVRKREKNGELSEDESKSLQDDIQKLTDRYIKKIDELLAEKEKEL 179
>sp|B8FGE3|RRF_DESAA Ribosome-recycling factor OS=Desulfatibacillum alkenivorans (strain
AK-01) GN=frr PE=3 SV=1
Length = 185
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 109/173 (63%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI AL + L ++RTGRAS MLD + ++ G P+N A V++ +S+ ++I P+D
Sbjct: 13 MDKAIAALEKGLLRVRTGRASLSMLDGVKLDYYGTPTPINQAATVAIPESRLITIQPWDA 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++E AI+ S LGLNP DG+ + AIP LT++ + M K+V K SE+ K S+R R
Sbjct: 73 SVIKDIEKAILKSDLGLNPSNDGKIIRIAIPPLTEDRRKEMVKLVNKMSEEGKISVRNIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A + MKK G + +D + + EV ++T +VK DD+C KEKEI E
Sbjct: 133 RDANETIKSMKKDG-DIAEDLAFKGQDEVQKITDDFVKKVDDICAQKEKEILE 184
>sp|Q65JJ6|RRF_BACLD Ribosome-recycling factor OS=Bacillus licheniformis (strain DSM 13
/ ATCC 14580) GN=frr PE=3 SV=1
Length = 185
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ AI A REL +R GRA+P +LD + VE G + PLN +A ++V +++ L I PYD
Sbjct: 13 MQKAISAYQRELATVRAGRANPSLLDKVAVEYYGAQTPLNQIASITVPEARMLVITPYDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L ++E AI + LG+ P DG + IP LT+E + + K+V K SED K ++R R
Sbjct: 73 TALGDIEKAIQKADLGVTPSNDGNIIRITIPPLTEERRKELAKLVKKYSEDAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A D +KK + +D+++ ++V +LT +YV D++ K KEKEI E
Sbjct: 133 RDANDDLKKLEKNGEMTEDELRSSTEDVQKLTDEYVSKIDEITKDKEKEIME 184
>sp|B1MZ62|RRF_LEUCK Ribosome-recycling factor OS=Leuconostoc citreum (strain KM20)
GN=frr PE=3 SV=1
Length = 181
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 103/168 (61%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A AL RELT +RTGRA+P +LD I VE G PLN +A +SV +++ L I P+D
Sbjct: 12 MQGAQDALQRELTSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEARVLLITPFDK 71
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+E+ AI S LGLNP DG + IP +T+E + + K V +E K S+R R
Sbjct: 72 TALEEIIRAINMSDLGLNPSSDGNIVRLMIPQMTEEGRKDLAKQVKAEAEKAKVSVRNVR 131
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ A+D +KK +P+D +++ E ++ +LT +K+ DD+ KEKE+
Sbjct: 132 RDAMDSVKKE-KEMPEDDVRKAENDIQKLTDNNIKAIDDIASEKEKEL 178
>sp|B8FRG2|RRF_DESHD Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain
DCB-2 / DSM 10664) GN=frr PE=3 SV=1
Length = 185
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ AL RE +R GRA+P MLD I VE G + P+N LA +SV + + L+I P+D
Sbjct: 13 MVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLTIQPWDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L +E AI+ S LGLNP DG + IP LT E + K V K +ED + ++R R
Sbjct: 73 SSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSRVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ + D +KK + +D++KR + +V ++T K+VK D + KEKEI E
Sbjct: 133 RDSNDELKKLEKDHTASEDEVKRAQDDVQKMTDKFVKEIDRIMGTKEKEIME 184
>sp|B5EHV8|RRF_GEOBB Ribosome-recycling factor OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=frr PE=3 SV=1
Length = 185
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 110/172 (63%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ +I +L +E K+RTGRAS +LD I V++ G PLN +A +++ +++T++I+P+D
Sbjct: 13 MDKSIESLRKEYQKVRTGRASTSLLDDIKVDSYGTLSPLNQVATLAIPEARTITISPWDS 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI++S LGLNP DG+ + +P LT+E + + K + + +ED K ++R R
Sbjct: 73 KMIAPIEKAIMNSNLGLNPANDGKMIRLTLPPLTEERRKDIVKQLKRDAEDAKVALRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A+D +KK S+ +D+ KR EKEV + T +V D+V KEKE+ E
Sbjct: 133 RDAIDQLKKLEKDKSISEDEQKRAEKEVQDFTNSHVAKVDEVLLHKEKEVME 184
>sp|P61304|RRF_GEOSL Ribosome-recycling factor OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=frr PE=3 SV=1
Length = 185
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 108/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME ++ +L RE K+RTGRA+ G+LD I V+ G PLN +A ++V + +T++I P++
Sbjct: 13 MEKSVESLRREYQKVRTGRANTGLLDEIRVDFYGNPSPLNQVATLAVPEPRTITIQPWET 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +E AI+++ LG P DG+ + ++P LT+E + + K + KT+ED K +IR R
Sbjct: 73 KMIPVIEKAILNANLGFTPSNDGKLIRISLPPLTEERRKEIVKSLKKTAEDAKIAIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A+D +KK + +D +KR EKEV ++T YV D+V KEKE+ E
Sbjct: 133 RDAIDGLKKLEKDKKISEDDLKRAEKEVQDVTNVYVAKVDEVLAHKEKEVME 184
>sp|Q8EQV0|RRF_OCEIH Ribosome-recycling factor OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=frr PE=3 SV=1
Length = 185
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ ALS+ L +R GRA+P +LD + V+ G PLN LA V +++ L+I PYD
Sbjct: 13 MEQAVQALSKNLASVRAGRANPSILDSVFVDYYGASTPLNQLASVGAPEARLLTITPYDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + ++E AI + LGL+P DG + IPALT+E + + KVV K SE+ K IR R
Sbjct: 73 SAIGDIEKAIQKADLGLSPSSDGNIIRINIPALTQERRKDLVKVVGKYSEEAKVQIRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ D +KK L +D ++ + +V T Y+ D + K KE EI E
Sbjct: 133 RDTNDQLKKMEKNGDLTEDDLRGFQDDVQTSTNDYINKIDQLAKNKENEIME 184
>sp|A1VFB2|RRF_DESVV Ribosome-recycling factor OS=Desulfovibrio vulgaris subsp. vulgaris
(strain DP4) GN=frr PE=3 SV=1
Length = 186
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI AL RE ++LRTGRAS ++D I V+ G P++ +A V+V DS+ ++I P+D
Sbjct: 14 MEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAVPDSRCITIQPWDR 73
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N +E AI+ S LGLNP DG+ + IP LT+E + + K+ K +E+ K ++R R
Sbjct: 74 NAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARKYAEEAKVAVRNVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ A + +KK L +D +++ +++V +LT ++V D+ AKEKEI
Sbjct: 134 RDANEQLKKLEKNKELSEDDLRKAQEDVQKLTDRFVAKTDEKAGAKEKEI 183
>sp|Q72DQ9|RRF_DESVH Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=frr PE=3
SV=1
Length = 186
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI AL RE ++LRTGRAS ++D I V+ G P++ +A V+V DS+ ++I P+D
Sbjct: 14 MEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAVPDSRCITIQPWDR 73
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N +E AI+ S LGLNP DG+ + IP LT+E + + K+ K +E+ K ++R R
Sbjct: 74 NAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARKYAEEAKVAVRNVR 133
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ A + +KK L +D +++ +++V +LT ++V D+ AKEKEI
Sbjct: 134 RDANEQLKKLEKNKELSEDDLRKAQEDVQKLTDRFVAKTDEKAGAKEKEI 183
>sp|B1KWM1|RRF_CLOBM Ribosome-recycling factor OS=Clostridium botulinum (strain Loch
Maree / Type A3) GN=frr PE=3 SV=1
Length = 184
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 101/169 (59%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M +IVAL REL ++ GRA+P MLD I E G PLN LA +SV +++ L I P+D
Sbjct: 13 MGKSIVALKRELASMKAGRANPAMLDRIDAEYYGSMTPLNQLANISVPEARVLLIQPWDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+++ +E AI+ S LGLNP DG + IP LT+E + + K V KT E+ K +IR R
Sbjct: 73 SSMGAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEETKVAIRSIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ D +K + +D +K+ E ++ + T KY+K D + AKEKEI
Sbjct: 133 RDCNDDVKNLKKDDVSEDDIKKTEDDIQKKTDKYIKEIDSIISAKEKEI 181
>sp|Q9WX76|RRF_THET8 Ribosome-recycling factor OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=frr PE=1 SV=1
Length = 185
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ L L LRTGRA+P +L H+ VE G +PLN +A V+ D +TL + +D
Sbjct: 14 MQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQ 73
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LK +E AI S LGLNP G L IP LT+E + + + V + +E+ + +IR R
Sbjct: 74 NALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIR 133
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
++ALD +KK L +D+ KR E E+ ++T +++ AD + + KE+EI
Sbjct: 134 REALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQEI 183
>sp|Q72KE0|RRF_THET2 Ribosome-recycling factor OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=frr PE=3 SV=1
Length = 185
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ L L LRTGRA+P +L H+ VE G +PLN +A V+ D +TL + +D
Sbjct: 14 MQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQ 73
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N LK +E AI S LGLNP G L IP LT+E + + + V + +E+ + +IR R
Sbjct: 74 NALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIR 133
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
++ALD +KK L +D+ KR E E+ ++T +++ AD + + KE+EI
Sbjct: 134 REALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQEI 183
>sp|A0LV51|RRF_ACIC1 Ribosome-recycling factor OS=Acidothermus cellulolyticus (strain
ATCC 43068 / 11B) GN=frr PE=3 SV=1
Length = 185
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A +RTGRA+P + I VE G PLN LA +V D++ + I+PYD
Sbjct: 13 MEKATNVARENFAAIRTGRANPALFSKITVEYYGTPTPLNQLASFTVADARLIVIHPYDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
+L+ +E AI S LG+NP DG + AIP LT+E + K+ +E+ + ++IR
Sbjct: 73 GSLRAIEKAIRDSDLGVNPTDDGSVIRVAIPPLTEERRRDYIKMARHEAEEARVAIRNIR 132
Query: 118 RSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
R + ALD ++K G + +D ++R EKE+DELT KYV D++ K KE E+ E
Sbjct: 133 RHAKDALDKLQKDG-EVGEDDVRRAEKELDELTHKYVAHIDEMLKHKEAELLE 184
>sp|A4J5Z0|RRF_DESRM Ribosome-recycling factor OS=Desulfotomaculum reducens (strain
MI-1) GN=frr PE=3 SV=1
Length = 184
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 103/169 (60%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ + RE LR GRA+P +LD + V G PLN LA +SV +++ L I P+D
Sbjct: 13 MKKSVDVVRREFASLRAGRATPSILDKVTVSYYGTPTPLNQLANISVPEARVLVIQPWDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI+ S +G+ P DG + IP LT+E + KV+ K +E+ + ++R R
Sbjct: 73 SVIPEVEKAILKSDVGITPSSDGTVIRLIIPQLTQERRTELVKVIKKKAEEGRVAVRNIR 132
Query: 121 QKALDMMK-KAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ D +K K +P+D+ KR + E+ +LT KYVK D++ KAKE+EI
Sbjct: 133 RDTNDSIKAKQKDGIPEDEAKRGQDELQKLTDKYVKEIDEMVKAKEQEI 181
>sp|Q1IZI9|RRF_DEIGD Ribosome-recycling factor OS=Deinococcus geothermalis (strain DSM
11300) GN=frr PE=3 SV=1
Length = 183
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI AL L+ LRTGRA+PG+L ++VE G MP++ +A ++ D++TL I P+D
Sbjct: 15 MGKAIEALENNLSVLRTGRANPGILKKVMVEYYGSSMPIDQVASITTPDARTLVITPWDR 74
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI S LGLNP G + ++P LT+E + + K +E+ + +IR R
Sbjct: 75 GALNPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEEARVAIRSIR 134
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ ALD +KK + D++KR E EV ++T +Y+K +D KE+EI
Sbjct: 135 KHALDEVKKV-EGVGDDEIKRAEAEVQKITDEYIKRVEDTFHKKEQEI 181
>sp|Q24UG0|RRF_DESHY Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain
Y51) GN=frr PE=3 SV=1
Length = 185
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A+ AL RE +R GRA+P MLD I VE G + P+N LA +SV + + L+I P+D
Sbjct: 13 MVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLTIQPWDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++L +E AI+ S LGLNP DG + IP LT E + K V K +ED + ++R R
Sbjct: 73 SSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSRVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ + D +KK + +D++KR + +V ++T K+VK + + KEKEI E
Sbjct: 133 RDSNDELKKLEKDHTASEDEVKRAQDDVQKMTDKFVKEIERIMGTKEKEIME 184
>sp|A7GRF4|RRF_BACCN Ribosome-recycling factor OS=Bacillus cereus subsp. cytotoxis
(strain NVH 391-98) GN=frr PE=3 SV=1
Length = 185
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRAS +LD + V+ G P+ LA ++V +++ L I PYD
Sbjct: 13 MEKAVAAYSRELATVRAGRASASILDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI+ + LGLNP DG + A PALT+E + + KVV K +ED K +IR R
Sbjct: 73 TSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRRELVKVVKKYAEDAKVAIRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ D +KK + +D ++ +++ + T KY+ D++ K KE+EI E
Sbjct: 133 RDGNDELKKLEKAGEMTEDDLRGYTEDIQKETDKYIAKVDEIAKNKEQEIME 184
>sp|P61303|RRF_CORDI Ribosome-recycling factor OS=Corynebacterium diphtheriae (strain
ATCC 700971 / NCTC 13129 / Biotype gravis) GN=frr PE=3
SV=1
Length = 185
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 99/162 (61%), Gaps = 2/162 (1%)
Query: 11 ELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAI 70
EL +RTGRA+P M + +I + GV P+ +A +SV +++ L I PY+ + + E+E+AI
Sbjct: 23 ELVNIRTGRANPAMFNGVIADYYGVPTPITQMATISVPEARMLLIKPYEMSMMNEIENAI 82
Query: 71 VSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK- 129
+S LG+NP DGQ L IP LT+E + M K+ ED K +IR R+K +D +KK
Sbjct: 83 RNSDLGVNPTNDGQVLRVTIPQLTEERRRDMAKLAKSKGEDGKIAIRNVRRKGMDQLKKI 142
Query: 130 -AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+D+++ EKE+D++T KYV D+V KE E+ E
Sbjct: 143 QKDGDAGEDEVQAAEKELDKVTAKYVAQVDEVVAKKEAELME 184
>sp|Q9RU82|RRF_DEIRA Ribosome-recycling factor OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=frr PE=3 SV=1
Length = 183
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M AI A L+ LRTGRA+PG+L I+V+ G +MP++ +A ++ D +TL I P+D
Sbjct: 15 MNKAIEAFENNLSVLRTGRANPGILKKIVVDYYGSQMPIDQVASITTPDPRTLVITPWDR 74
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L +E AI S LGLNP G + ++P LT+E + + K +ED + ++R R
Sbjct: 75 GALNPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEDARIAVRNLR 134
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ ALD +KK L +D++KR E +V ++T +YV + V + KE+EI
Sbjct: 135 KHALDEVKKV-EGLGEDEIKRGEADVQKITDEYVARVESVFQKKEQEI 181
>sp|Q3Z9H9|RRF_DEHE1 Ribosome-recycling factor OS=Dehalococcoides ethenogenes (strain
195) GN=frr PE=3 SV=1
Length = 185
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M A++ LS+EL+ +RTGR+SP +++HI VE GV P+NHLA ++ D + ++I P+D
Sbjct: 13 MAASLDVLSQELSGIRTGRSSPALVEHIKVEYAGVPTPINHLASIAAPDPRYITIQPWDR 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LGL P DG + IP L++E Q M K+V+K E+ K ++R R
Sbjct: 73 SCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVSKRLEEDKIAMRNVR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A+D MKK S + +D +KR ++ ++T ++ AD + KE E+ +
Sbjct: 133 RDAMDEMKKLEKSKEISQDDLKRGSDQLQKITDSFIAKADKLGADKETELKQ 184
>sp|B1II63|RRF_CLOBK Ribosome-recycling factor OS=Clostridium botulinum (strain Okra /
Type B1) GN=frr PE=3 SV=1
Length = 184
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M IVAL REL ++ GRA+P MLD I E G PLN L +SV +++ L I P+D
Sbjct: 13 MGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LGLNP DG + IP LT+E + + K V KT E+ K +IR R
Sbjct: 73 SALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ D +K + +D +K+ E ++ + T KY+K D + AKEKEI
Sbjct: 133 RDCNDDVKNLKKDDVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEI 181
>sp|C1FSK2|RRF_CLOBJ Ribosome-recycling factor OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=frr PE=3 SV=1
Length = 184
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M IVAL REL ++ GRA+P MLD I E G PLN L +SV +++ L I P+D
Sbjct: 13 MGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LGLNP DG + IP LT+E + + K V KT E+ K +IR R
Sbjct: 73 SALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ D +K + +D +K+ E ++ + T KY+K D + AKEKEI
Sbjct: 133 RDCNDDVKNLKKDDVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEI 181
>sp|C3L0C9|RRF_CLOB6 Ribosome-recycling factor OS=Clostridium botulinum (strain 657 /
Type Ba4) GN=frr PE=3 SV=1
Length = 184
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M IVAL REL ++ GRA+P MLD I E G PLN L +SV +++ L I P+D
Sbjct: 13 MGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LGLNP DG + IP LT+E + + K V KT E+ K +IR R
Sbjct: 73 SALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ D +K + +D +K+ E ++ + T KY+K D + AKEKEI
Sbjct: 133 RDCNDDVKNLKKDDVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEI 181
>sp|A1R4W2|RRF_ARTAT Ribosome-recycling factor OS=Arthrobacter aurescens (strain TC1)
GN=frr PE=3 SV=1
Length = 185
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ + +RTGRA+P + + +IVE G PL LA V D++T+ I PYD
Sbjct: 13 MDKAVEVAKDDFASIRTGRANPALYNKVIVEYYGTPTPLQQLASFGVPDARTILITPYDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+++E A+ S +G NP DG + IP LTKE + K+V ED K SIR R
Sbjct: 73 TALRDIEKALSDSEVGANPSNDGNVIRVTIPELTKERRKEYVKIVKGKGEDAKVSIRSIR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+KA LD + K G + +D+ R EKE+D LTK++V S D++ K KE E+ E
Sbjct: 133 RKAKDSLDKLVKDGEA-GEDEGARAEKELDALTKQHVDSIDELLKRKEAELLE 184
>sp|A7GG20|RRF_CLOBL Ribosome-recycling factor OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=frr PE=3 SV=1
Length = 184
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M IVAL REL ++ GRA+P MLD I E G PLN L +S+ +++ L I P+D
Sbjct: 13 MGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISIPEARVLLIQPWDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ L +E AI+ S LGLNP DG + IP LT+E + + K V KT E+ K +IR R
Sbjct: 73 SALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIR 132
Query: 121 QKALDMMKK-AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ D +K + +D +K+ E ++ + T KY+K D + AKEKEI
Sbjct: 133 RDCNDDVKNLKKDDVSEDDIKKAEDDIQKKTDKYIKEIDSIISAKEKEI 181
>sp|A0LXJ3|RRF_GRAFK Ribosome-recycling factor OS=Gramella forsetii (strain KT0803)
GN=frr PE=3 SV=1
Length = 183
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME AI L ++L+ +R G+ASP ML ++VE G + PL +A V+ D++TLSI P++
Sbjct: 15 MEKAITHLKKQLSNIRAGKASPSMLGSVMVEYYGSQTPLQQVANVNTPDARTLSIQPFEK 74
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E I+ + LG NP +G+ +I +P LT+E + + K +ED K +R R
Sbjct: 75 SLITEIERGIMLANLGFNPMNNGESVIINVPPLTEERRKQLSKQAKAEAEDAKVGVRNDR 134
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
++A+ +KKA + +D +K E EV ELT Y++ D + KE EI
Sbjct: 135 KQAMQELKKA--DISEDLLKSSEDEVQELTNTYIERIDKILTVKETEI 180
>sp|C5D9B8|RRF_GEOSW Ribosome-recycling factor OS=Geobacillus sp. (strain WCH70) GN=frr
PE=3 SV=1
Length = 185
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 105/172 (61%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ A+ A +REL +R GRA+P +L+ + V+ G+ P+ LA +SV +++ L I PYD
Sbjct: 13 MDKAVQAFTRELATIRAGRANPSLLEKVTVDYYGMPTPIIQLASISVPEARLLVIQPYDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ +K++E AI+SS LGL P DG + IP LT+E + + K+V K SED K ++R R
Sbjct: 73 SVIKDIEKAILSSDLGLTPSNDGSVIRITIPPLTEERRRELVKLVKKYSEDAKVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A D +KK + +D+++ +V +LT ++ D + K KEKE+ E
Sbjct: 133 RDANDELKKLEKNGEITEDELRGYTDDVQKLTDDHIAKIDAITKEKEKEVME 184
>sp|Q185S5|RRF_CLOD6 Ribosome-recycling factor OS=Clostridium difficile (strain 630)
GN=frr PE=3 SV=1
Length = 185
Score = 119 bits (299), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M I AL E +R GRA+ MLD I V+ G P+N + +SV + + L I+P+D
Sbjct: 13 MNGTIDALKFEFGTIRAGRANAQMLDKIRVDYYGTPTPINQIGAISVPEPRILMISPWDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+ + E+E AI +S LGLNP DG+ + ++PALT+E + + K +K +E+ K IR R
Sbjct: 73 SAMHEIEKAIANSDLGLNPSNDGEVIRLSVPALTEERRKELAKKASKAAEEFKVRIRNER 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ A + +KK G L +D++K+ + EV ++T K++K D + KEK+I E
Sbjct: 133 RDANEKIKKMEKGGELTEDELKKAQDEVQKMTDKFIKEIDTLLSKKEKDIME 184
>sp|B3WES5|RRF_LACCB Ribosome-recycling factor OS=Lactobacillus casei (strain BL23)
GN=frr PE=3 SV=1
Length = 185
Score = 119 bits (298), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L REL +R GRA+ +L+ I VE G PLN +A +++ + + L ++PYD ++LK +
Sbjct: 19 SLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIPEPRVLQVSPYDKSSLKNI 78
Query: 67 ESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E+A+ +S LG+NP DG + IP LT E + + K V K SE K +IR R++ LD
Sbjct: 79 ETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKYSESAKIAIRNIRREGLDK 138
Query: 127 MKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+K+ + +D + RLEK++ + T K D++ AKEKEI E
Sbjct: 139 LKRQEKDGDITEDDLHRLEKDMQKATDDATKRIDEIAAAKEKEITE 184
>sp|Q038L5|RRF_LACC3 Ribosome-recycling factor OS=Lactobacillus casei (strain ATCC 334)
GN=frr PE=3 SV=1
Length = 185
Score = 119 bits (298), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Query: 7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
+L REL +R GRA+ +L+ I VE G PLN +A +++ + + L ++PYD ++LK +
Sbjct: 19 SLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIPEPRVLQVSPYDKSSLKNI 78
Query: 67 ESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
E+A+ +S LG+NP DG + IP LT E + + K V K SE K +IR R++ LD
Sbjct: 79 ETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGKYSESAKIAIRNIRREGLDK 138
Query: 127 MKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+K+ + +D + RLEK++ + T K D++ AKEKEI E
Sbjct: 139 LKRQEKDGDITEDDLHRLEKDMQKATDDATKRIDEIAAAKEKEITE 184
>sp|B1XJ13|RRF_SYNP2 Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=frr PE=3 SV=1
Length = 182
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ I A R LRTGRAS +LD I VE G + PL LA +S DS T+ I P+D
Sbjct: 10 MQKTIEATQRSFNTLRTGRASASLLDRITVEYYGAETPLKSLASISTPDSSTIMIQPFDR 69
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
+L ++E AI S LGL P DG + IP LTKE Q + K K +E+ K ++R R
Sbjct: 70 GSLSDVERAISMSDLGLTPNNDGTNIRLNIPPLTKERRQELVKTAGKLAEEGKVALRNIR 129
Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
+ A+D ++K S + +D+ + L+ ++ ++T ++ DD+ K KEK+I
Sbjct: 130 RDAIDDVRKQEKNSDISEDESRSLQDDIQKVTDEFTTKIDDLLKIKEKDI 179
>sp|B8HL79|RRF_CYAP4 Ribosome-recycling factor OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=frr PE=3 SV=1
Length = 182
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
M+ ++ A R +RTGRA+ +LD + VE G + PL LA +S DS T++I P+D
Sbjct: 10 MQKSVEATQRAFNTIRTGRANTSLLDRVTVEYYGAETPLRSLANISTPDSSTIAIQPFDR 69
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
N+L +E AI S LGL P DG + IP LT + + + K +K +E+ K SIR R
Sbjct: 70 NSLNLIEKAISMSDLGLTPNNDGTVIRLNIPPLTSDRRKELVKTASKLAEEGKVSIRNVR 129
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEIN 169
+ A+D +KK G + L +D++K L+ ++ +LT KY+ D + KEK+I+
Sbjct: 130 RDAVDSVKKQGKAGELSEDEVKDLQDKIQKLTDKYIAKVDGLLAEKEKDIS 180
>sp|A9VT62|RRF_BACWK Ribosome-recycling factor OS=Bacillus weihenstephanensis (strain
KBAB4) GN=frr PE=3 SV=1
Length = 185
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+ A SREL +R GRAS +LD + V+ G P+ LA ++V +++ L I PYD
Sbjct: 13 MEKAVAAYSRELATVRAGRASSSVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
++ ++E AI+ + LGLNP DG + A PALT+E + + KVV K +E+ K ++R R
Sbjct: 73 TSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+ + D +KK + +D ++ +++ + T KY+ D++ K KEKEI E
Sbjct: 133 RDSNDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184
>sp|O86770|RRF_STRCO Ribosome-recycling factor OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=frr PE=3 SV=1
Length = 185
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 95/173 (54%), Gaps = 4/173 (2%)
Query: 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
ME A+V + +RTGRA P M + I+ E G P+N LA SV + + + P+D
Sbjct: 13 MEKAVVVAKEDFAAIRTGRAHPAMFNKIVAEYYGAPTPINQLASFSVPEPRMAVVTPFDK 72
Query: 61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
L+ +E AI S LG+NP DG + P LT+E + KV ED K SIR R
Sbjct: 73 TALRNIEQAIRDSDLGVNPSNDGNIIRVTFPELTEERRREYIKVAKAKGEDAKVSIRSVR 132
Query: 121 QKA---LDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
+KA +D M K G + +D+ +R EKE+D+ T KYV D++ K KE E+ E
Sbjct: 133 RKAKDSIDKMVKDG-EVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLE 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,279,391
Number of Sequences: 539616
Number of extensions: 2296633
Number of successful extensions: 11233
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 9829
Number of HSP's gapped (non-prelim): 1001
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)