Query 030800
Match_columns 171
No_of_seqs 113 out of 1028
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 07:07:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dd5_A Ribosome recycling fact 100.0 7.4E-66 2.5E-70 408.1 21.1 170 1-170 13-184 (185)
2 1ise_A Ribosome recycling fact 100.0 8.1E-66 2.8E-70 407.8 20.2 170 1-170 13-184 (185)
3 1is1_A Ribosome recycling fact 100.0 1.2E-65 4.2E-70 407.0 21.0 170 1-170 13-184 (185)
4 1wqg_A Ribosome recycling fact 100.0 1.2E-65 4.1E-70 407.1 20.9 170 1-170 13-184 (185)
5 4gfq_A Ribosome-recycling fact 100.0 1.8E-65 6E-70 411.4 19.1 170 1-170 37-208 (209)
6 1eh1_A Ribosome recycling fact 100.0 9.3E-66 3.2E-70 407.5 17.1 170 1-170 14-185 (185)
7 1ge9_A Ribosome recycling fact 100.0 4.2E-65 1.5E-69 403.4 19.9 168 1-170 16-183 (184)
8 1wih_A Mitochondrial ribosome 100.0 1.9E-36 6.5E-41 211.5 4.3 82 18-99 1-83 (84)
9 3lhp_S 4E10_D0_1ISEA_004_N (T9 100.0 1.1E-29 3.7E-34 187.3 8.6 89 81-171 33-123 (123)
10 3lf9_A 4E10_D0_1IS1A_001_C (T1 100.0 3.7E-28 1.3E-32 177.9 13.6 80 91-170 31-112 (121)
11 3onj_A T-snare VTI1; helix, HA 85.8 3.2 0.00011 28.6 6.9 57 90-151 24-94 (97)
12 4hhu_A OR280; engineered prote 76.8 8.3 0.00028 28.1 6.5 67 48-114 79-152 (170)
13 2kl8_A OR15; structural genomi 76.2 2.9 9.9E-05 27.3 3.5 36 78-113 34-69 (85)
14 3lay_A Zinc resistance-associa 76.0 24 0.00081 26.9 11.1 70 92-163 67-139 (175)
15 4e81_A Chaperone protein DNAK; 74.6 28 0.00096 27.1 9.7 77 92-168 118-203 (219)
16 1l6x_B Minimized B-domain of p 72.6 2.2 7.6E-05 24.0 2.0 20 88-107 13-32 (34)
17 2fqm_A Phosphoprotein, P prote 70.6 7.2 0.00025 25.5 4.4 32 82-113 16-48 (75)
18 3fxb_A Trap dicarboxylate tran 70.0 38 0.0013 27.5 10.0 67 92-158 236-307 (326)
19 3tuf_A Stage III sporulation p 69.2 29 0.00098 27.0 8.4 59 106-164 82-144 (197)
20 4hhu_A OR280; engineered prote 66.3 14 0.00047 26.9 5.6 61 54-114 4-71 (170)
21 2pfy_A Putative exported prote 64.3 52 0.0018 26.1 9.8 66 92-157 220-288 (301)
22 3u65_B TP33 protein; tetratric 62.9 39 0.0014 27.5 8.7 66 91-156 238-306 (328)
23 2pfz_A Putative exported prote 56.2 73 0.0025 25.2 11.4 66 92-157 219-287 (301)
24 4b9q_A Chaperone protein DNAK; 52.9 70 0.0024 28.4 9.1 63 91-153 505-576 (605)
25 1zda_A Mini protein A domain, 52.1 3.4 0.00012 23.8 0.2 19 88-106 18-36 (38)
26 1u00_A HSC66, chaperone protei 50.9 83 0.0028 24.3 8.8 60 91-150 114-182 (227)
27 3m20_A 4-oxalocrotonate tautom 50.4 34 0.0011 20.7 4.8 27 85-111 2-28 (62)
28 1vcs_A Vesicle transport throu 49.8 28 0.00097 23.8 4.8 31 91-121 29-59 (102)
29 1ixm_A SPO0B, protein (sporula 49.4 10 0.00036 29.0 2.7 65 92-158 3-67 (192)
30 2vpn_A Periplasmic substrate b 48.5 97 0.0033 24.7 8.6 65 92-156 222-291 (316)
31 2hzl_A Trap-T family sorbitol/ 48.0 1.1E+02 0.0038 24.8 10.5 64 93-156 257-323 (365)
32 2p32_A Heat shock 70 kDa prote 47.0 68 0.0023 22.1 6.8 19 133-151 42-60 (120)
33 1ud0_A HSC70, 70 kDa heat-shoc 45.6 67 0.0023 21.7 7.0 39 113-151 6-46 (113)
34 2kho_A Heat shock protein 70; 44.8 95 0.0033 27.5 8.7 61 91-151 505-574 (605)
35 2xwv_A Sialic acid-binding per 44.3 77 0.0026 25.4 7.4 68 91-158 224-291 (312)
36 2jhe_A Transcription regulator 43.6 50 0.0017 23.3 5.6 58 52-110 2-63 (190)
37 3lof_A Heat shock 70 kDa prote 41.9 79 0.0027 21.4 7.8 41 111-151 9-51 (113)
38 1usp_A Organic hydroperoxide r 39.9 27 0.00093 24.7 3.6 26 85-110 97-122 (139)
39 1in0_A YAJQ protein, HI1034; a 39.1 8.1 0.00028 29.3 0.6 31 59-89 103-133 (163)
40 2bjo_A Organic hydroperoxide r 37.1 31 0.0011 24.2 3.5 26 85-110 95-120 (136)
41 1qwi_A OSMC, osmotically induc 36.9 33 0.0011 24.4 3.6 25 86-110 102-126 (143)
42 3hd7_A Vesicle-associated memb 36.8 81 0.0028 21.0 5.4 28 136-163 4-31 (91)
43 1n2f_A Organic hydroperoxide r 36.5 32 0.0011 24.4 3.5 26 85-110 100-125 (142)
44 2ql8_A Putative redox protein; 35.6 29 0.00099 24.8 3.1 25 86-110 98-122 (143)
45 2zzv_A ABC transporter, solute 34.6 1.8E+02 0.0062 23.5 9.8 63 93-155 264-329 (361)
46 3qwo_C Motavizumab epitope sca 34.1 23 0.00079 22.1 2.0 25 88-112 14-38 (57)
47 2j69_A Bacterial dynamin-like 34.1 1.1E+02 0.0038 27.7 7.4 68 97-167 589-656 (695)
48 1zb9_A OHR, organic hydroperox 33.1 40 0.0014 24.0 3.6 26 86-111 102-127 (143)
49 2hpg_A ABC transporter, peripl 32.1 1.3E+02 0.0044 24.2 7.0 64 92-155 240-307 (327)
50 1nye_A Osmotically inducible p 31.0 45 0.0016 24.4 3.6 25 86-110 121-145 (162)
51 1ytz_I Troponin I; muscle, THI 30.9 1.6E+02 0.0055 22.5 6.8 63 92-162 8-76 (182)
52 2l5g_B Putative uncharacterize 30.5 84 0.0029 18.3 4.9 35 133-168 1-35 (42)
53 1j1e_C Troponin I, TNI; THIN f 29.0 1.9E+02 0.0066 22.0 11.0 50 92-141 10-65 (180)
54 3mc6_A Sphingosine-1-phosphate 28.4 48 0.0017 27.8 3.8 52 62-113 387-438 (497)
55 1j1d_C Troponin I, TNI; THIN f 28.1 1.7E+02 0.0058 21.1 10.2 50 92-141 10-65 (133)
56 2bzb_A Conserved domain protei 27.9 1.1E+02 0.0039 19.0 5.6 41 113-155 7-47 (62)
57 3m21_A Probable tautomerase HP 27.7 1E+02 0.0036 18.5 4.5 27 85-111 2-32 (67)
58 3ez1_A Aminotransferase MOCR f 27.6 2.3E+02 0.0079 22.7 7.8 51 62-112 356-415 (423)
59 3d2f_A Heat shock protein homo 26.6 3.5E+02 0.012 24.3 9.8 62 90-151 521-592 (675)
60 1ukk_A Osmotically inducible p 26.2 31 0.0011 24.6 1.9 24 86-109 100-123 (142)
61 1zpv_A ACT domain protein; str 25.8 89 0.0031 19.7 4.0 57 53-111 8-72 (91)
62 1njg_A DNA polymerase III subu 25.7 1.8E+02 0.0062 20.6 7.2 19 85-103 177-195 (250)
63 2dkj_A Serine hydroxymethyltra 24.0 1.3E+02 0.0044 23.9 5.5 49 63-111 325-387 (407)
64 3ubw_A 14-3-3E, 14-3-3 protein 23.8 2.8E+02 0.0097 22.2 7.6 71 91-161 62-135 (261)
65 1gs9_A Apolipoprotein E, APOE4 23.7 2.2E+02 0.0076 21.0 9.9 75 86-160 78-155 (165)
66 3cje_A OSMC-like protein; stru 23.3 73 0.0025 23.1 3.6 26 85-110 117-143 (167)
67 2f1f_A Acetolactate synthase i 23.3 2.3E+02 0.0077 20.9 6.5 57 51-108 4-68 (164)
68 3iqu_A 14-3-3 protein sigma; s 23.3 2.8E+02 0.0094 21.9 8.2 71 91-161 39-112 (236)
69 1xw3_A Sulfiredoxin; retroredu 23.0 26 0.00088 24.7 0.9 59 37-106 17-82 (110)
70 2qdq_A Talin-1; dimerisation d 22.9 1.3E+02 0.0046 18.1 4.4 26 96-122 12-37 (50)
71 1lxj_A YBL001C, hypothetical 1 22.9 91 0.0031 21.3 3.7 37 53-89 10-52 (104)
72 2o8p_A 14-3-3 domain containin 22.8 1.6E+02 0.0055 23.2 5.6 68 91-159 41-110 (227)
73 2npm_A 14-3-3 domain containin 22.6 3E+02 0.01 22.0 7.5 72 90-161 61-135 (260)
74 1lxn_A Hypothetical protein MT 22.4 34 0.0012 23.3 1.4 36 53-88 6-47 (99)
75 2hbp_A Cytoskeleton assembly c 21.7 25 0.00087 22.7 0.6 26 81-106 34-59 (68)
76 3g3z_A NMB1585, transcriptiona 21.1 1.6E+02 0.0055 19.8 4.9 94 37-158 46-141 (145)
77 2br9_A 14-3-3E, 14-3-3 protein 21.0 3E+02 0.01 21.5 8.1 71 91-161 36-109 (234)
78 1o9d_A 14-3-3-like protein C; 20.6 3.3E+02 0.011 21.7 7.6 71 91-161 41-114 (260)
79 2c0s_A Conserved domain protei 20.6 1.7E+02 0.0057 18.4 7.4 44 113-158 7-50 (64)
80 3boq_A Transcriptional regulat 20.4 2.1E+02 0.0072 19.5 6.0 92 34-153 60-153 (160)
No 1
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=100.00 E-value=7.4e-66 Score=408.08 Aligned_cols=170 Identities=36% Similarity=0.584 Sum_probs=167.4
Q ss_pred CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR 80 (171)
Q Consensus 1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~ 80 (171)
|++++++|+++|+++|+|||||++||+|+|+|||+++||+|||+|++++||+|+|+|||++++++|++||+.|+||+||+
T Consensus 13 M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~ 92 (185)
T 1dd5_A 13 MKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPI 92 (185)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHHHHHSSSCCCCE
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCcccHHHceeeecCCCCEEEEEecCHhHHHHHHHHHHHcCCCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800 81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD 158 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id 158 (171)
+||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++. +.+|||+.++++++||++||+|+++||
T Consensus 93 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id 172 (185)
T 1dd5_A 93 NDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLD 172 (185)
T ss_dssp ECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 469999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 030800 159 DVCKAKEKEINE 170 (171)
Q Consensus 159 ~l~~~KeKel~~ 170 (171)
+++++||||||+
T Consensus 173 ~~~~~KEkEim~ 184 (185)
T 1dd5_A 173 EVFEIKKEEIME 184 (185)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999997
No 2
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=100.00 E-value=8.1e-66 Score=407.85 Aligned_cols=170 Identities=35% Similarity=0.541 Sum_probs=167.3
Q ss_pred CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR 80 (171)
Q Consensus 1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~ 80 (171)
|++++++|+++|+++|+|||||++||+|+|+|||+++||+|||+|++++||+|+|+|||++++++|++||++|+||+||+
T Consensus 13 M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~ 92 (185)
T 1ise_A 13 MDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPN 92 (185)
T ss_dssp HHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHHHHTTCTTCCCE
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEeccCHhHHHHHHHHHHHcCCCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800 81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD 158 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id 158 (171)
+||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++. +.+|||+.++++++||++||+|+++||
T Consensus 93 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id 172 (185)
T 1ise_A 93 SAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIE 172 (185)
T ss_dssp ESSSEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 469999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 030800 159 DVCKAKEKEINE 170 (171)
Q Consensus 159 ~l~~~KeKel~~ 170 (171)
+++++||||||+
T Consensus 173 ~~~~~KEkEim~ 184 (185)
T 1ise_A 173 AALADKEAELMQ 184 (185)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999996
No 3
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=100.00 E-value=1.2e-65 Score=406.99 Aligned_cols=170 Identities=36% Similarity=0.529 Sum_probs=167.3
Q ss_pred CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR 80 (171)
Q Consensus 1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~ 80 (171)
|++++++|+++|+++|+|||||++||+|+|+|||+++||+|||+|++++||+|+|+|||++++++|++||++|+||+||+
T Consensus 13 M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~ 92 (185)
T 1is1_A 13 MDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPM 92 (185)
T ss_dssp HHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHHHHHTTSSCCCE
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEEecCHhHHHHHHHHHHHcCCCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800 81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD 158 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id 158 (171)
+||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++. +.+|||+.++++++||++||+|+++||
T Consensus 93 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id 172 (185)
T 1is1_A 93 SAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKID 172 (185)
T ss_dssp EETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999973 469999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 030800 159 DVCKAKEKEINE 170 (171)
Q Consensus 159 ~l~~~KeKel~~ 170 (171)
+++++||||||+
T Consensus 173 ~~~~~KEkEim~ 184 (185)
T 1is1_A 173 EVLAAKEKELME 184 (185)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999997
No 4
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=100.00 E-value=1.2e-65 Score=407.06 Aligned_cols=170 Identities=35% Similarity=0.614 Sum_probs=167.3
Q ss_pred CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR 80 (171)
Q Consensus 1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~ 80 (171)
|++++++|+++|+++|+|||||++||+|+|+|||+++||+|||+|++++||+|+|+|||++++++|++||++|+||+||+
T Consensus 13 M~kai~~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~ 92 (185)
T 1wqg_A 13 MEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPT 92 (185)
T ss_dssp HHHHHHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHHHHHSTTCCCCE
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHHHHcCCCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800 81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD 158 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id 158 (171)
+||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++. +.+|||+.++++++||++||+|+++||
T Consensus 93 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id 172 (185)
T 1wqg_A 93 NDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQID 172 (185)
T ss_dssp ECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999973 469999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 030800 159 DVCKAKEKEINE 170 (171)
Q Consensus 159 ~l~~~KeKel~~ 170 (171)
+++++||||||+
T Consensus 173 ~~~~~KEkEim~ 184 (185)
T 1wqg_A 173 ELVKHKEGELLE 184 (185)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999996
No 5
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=100.00 E-value=1.8e-65 Score=411.43 Aligned_cols=170 Identities=38% Similarity=0.620 Sum_probs=167.5
Q ss_pred CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR 80 (171)
Q Consensus 1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~ 80 (171)
|++|+++|+.+|++||+|||||++||+|+|+|||+++||+|||+|++++||+|+|+|||++++++|++||++|+||+||+
T Consensus 37 M~kaie~lk~el~~iRtGRA~p~lLd~I~VdyYG~~tPL~qvA~Isvpe~rtl~I~p~D~s~i~~IekAI~~S~LglnP~ 116 (209)
T 4gfq_A 37 MEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPS 116 (209)
T ss_dssp HHHHHHHHHHHHHTCCSBSCCGGGGTTCEEESSSCEEEGGGGEEEEEEETTEEEEEESSGGGHHHHHHHHHHHTSSCCCE
T ss_pred HHHHHHHHHHHHHhhhcCCCCHHHhCCeEEeeCCCccchhhhheeecCCCCEEEEecCcHhhHHHHHHHHHHcCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800 81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD 158 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id 158 (171)
+||+.|+|+||+||+|+|++|+|.|++.+|+||++|||+|+++++.+|+++ +.+|||+.++++++||++||+|+++||
T Consensus 117 ~dG~~Iri~iP~LTeErRkelvK~ak~~~E~aKvaIRniRrda~~~lKk~~K~~~isEDe~k~~e~eiQklTd~~i~~iD 196 (209)
T 4gfq_A 117 NDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVD 196 (209)
T ss_dssp ECSSCEEEECCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCceeeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 579999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 030800 159 DVCKAKEKEINE 170 (171)
Q Consensus 159 ~l~~~KeKel~~ 170 (171)
+++++||||||+
T Consensus 197 ~~l~~KEkEim~ 208 (209)
T 4gfq_A 197 EIAKNKEKEIME 208 (209)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcc
Confidence 999999999996
No 6
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=100.00 E-value=9.3e-66 Score=407.51 Aligned_cols=170 Identities=39% Similarity=0.617 Sum_probs=167.1
Q ss_pred CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR 80 (171)
Q Consensus 1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~ 80 (171)
|++++++|+++|+++|+|||||++||+|+|+|||+++||+|||+|++++||+|+|+|||++++++|++||+.|+||+||+
T Consensus 14 M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~ 93 (185)
T 1eh1_A 14 MQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPS 93 (185)
T ss_dssp HHHHHHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSSHHHHHHHHHHHSSSTTCCCEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEecCCHhHHHHHHHHHHHcCCCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800 81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD 158 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id 158 (171)
+||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++. +.+|||+.++++++||++||+|+++||
T Consensus 94 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id 173 (185)
T 1eh1_A 94 NKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKAD 173 (185)
T ss_dssp EETTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 469999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 030800 159 DVCKAKEKEINE 170 (171)
Q Consensus 159 ~l~~~KeKel~~ 170 (171)
+++++||||||+
T Consensus 174 ~~~~~KEkEim~ 185 (185)
T 1eh1_A 174 QLAEKKEQEILG 185 (185)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 999999999995
No 7
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=100.00 E-value=4.2e-65 Score=403.44 Aligned_cols=168 Identities=32% Similarity=0.538 Sum_probs=166.3
Q ss_pred CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800 1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR 80 (171)
Q Consensus 1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~ 80 (171)
|++++++|+++|+++|+|||||++||+|+|+|||+++||+|||+|++++||+|+|+|||++++++|++||++ +||+||+
T Consensus 16 M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~tpL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~-dLglnP~ 94 (184)
T 1ge9_A 16 MKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEKAIRE-ELNLNPT 94 (184)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHHHHHH-HHCSCCE
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEecCHHHHHHHHHHHHh-CCCCCcc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 030800 81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDV 160 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~~~iseD~~~~~~~~iq~ltd~~i~~id~l 160 (171)
+||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++.+ +|||+.++++++||++||+|+++||++
T Consensus 95 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~k-iseD~~k~~e~~iQkltd~~i~~id~~ 173 (184)
T 1ge9_A 95 VQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELEG-ISEDEKKRALERLQKLTDKYIDEINKL 173 (184)
T ss_dssp EETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999875 999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 030800 161 CKAKEKEINE 170 (171)
Q Consensus 161 ~~~KeKel~~ 170 (171)
+++||||||+
T Consensus 174 ~~~KEkEim~ 183 (184)
T 1ge9_A 174 MEAKEKEIMS 183 (184)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999999996
No 8
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1
Probab=100.00 E-value=1.9e-36 Score=211.47 Aligned_cols=82 Identities=29% Similarity=0.413 Sum_probs=80.7
Q ss_pred CCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecC-CCcHHHHHHHHhcCCCCCCcccCCCeEEEeCCCCCHH
Q 030800 18 GRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYD-PNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKE 96 (171)
Q Consensus 18 gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d-~~~i~~I~kAI~~s~l~~~p~~dg~~i~v~iP~~T~E 96 (171)
|||||++||+|+|+|||+++||+|+|+|+++++|+|+|+||| ++++++|++||++|+||+||++||+.|||+||++|+|
T Consensus 1 GRa~p~lld~I~V~yyG~~~pL~qvA~isv~~~r~l~I~p~D~~~~~~~IekAI~~S~LglnP~~dG~~Iri~iP~lTeE 80 (84)
T 1wih_A 1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSG 80 (84)
T ss_dssp CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCS
T ss_pred CCCChHHhCCEEEEECCCCccHHHceEEEcCCCCEEEEEecccHHHHHHHHHHHHHCCCCCCcccCCCEEEEeCCCCChh
Confidence 899999999999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred HHH
Q 030800 97 HIQ 99 (171)
Q Consensus 97 ~R~ 99 (171)
+|+
T Consensus 81 rR~ 83 (84)
T 1wih_A 81 PSS 83 (84)
T ss_dssp SCC
T ss_pred ccC
Confidence 996
No 9
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=99.96 E-value=1.1e-29 Score=187.29 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=84.0
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800 81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD 158 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id 158 (171)
..++.|+|+|| |+|+|++|+|.|++++|+||++|||+|+++++.+|++. +.+|||+.++++++||++||+|+++||
T Consensus 33 ~~~~~IRl~iP--TEERRkeLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd~eiSEDe~k~~e~eIQKLTDkyIkkID 110 (123)
T 3lhp_S 33 KFKAAVRKVFP--TEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLTDAAIKKIE 110 (123)
T ss_dssp HHHHHHTTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEeeCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999 99999999999999999999999999999999999983 469999999999999999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030800 159 DVCKAKEKEINEG 171 (171)
Q Consensus 159 ~l~~~KeKel~~~ 171 (171)
+++++||||||+|
T Consensus 111 ~ll~~KEKEIm~~ 123 (123)
T 3lhp_S 111 AALADMEAWLTQG 123 (123)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999998
No 10
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=99.96 E-value=3.7e-28 Score=177.92 Aligned_cols=80 Identities=26% Similarity=0.288 Sum_probs=76.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030800 91 PALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id~l~~~KeKel 168 (171)
.|||+|+|++|+|.|++++|+||++|||+|+++++.+|++. +.+|||+.++++++||++||+|+++||+++++|||||
T Consensus 31 ~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKLTDkyIkkID~ll~~KEKEI 110 (121)
T 3lf9_A 31 GGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTDVAVKKIDEVLAAKEKEL 110 (121)
T ss_dssp SBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999983 4699999999999999999999999999999999999
Q ss_pred hc
Q 030800 169 NE 170 (171)
Q Consensus 169 ~~ 170 (171)
|+
T Consensus 111 ~~ 112 (121)
T 3lf9_A 111 ME 112 (121)
T ss_dssp HC
T ss_pred HH
Confidence 96
No 11
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=85.78 E-value=3.2 Score=28.56 Aligned_cols=57 Identities=11% Similarity=0.212 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHH------HHHHHHHHHhcCCCCChHHHHH-HHHHHHHHHH
Q 030800 90 IPALTKEHIQAMCKVVAKTSEDVKQS-------IRRS------RQKALDMMKKAGSSLPKDQMKR-LEKEVDELTK 151 (171)
Q Consensus 90 iP~~T~E~R~~l~K~ak~~~e~~K~~-------iR~i------R~~~~~~lKk~~~~iseD~~~~-~~~~iq~ltd 151 (171)
+|..+.|.|+..++.+....++|..- +|++ |..++.+|+..+ -++.+ ++.++++++|
T Consensus 24 ~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk-----~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 24 APSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWK-----KTIQSDIKRPLQSLVD 94 (97)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----HHHHHHTHHHHHHHHH
T ss_pred HhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhh
Confidence 45778899999999999888888775 4444 555555665432 24444 5555555554
No 12
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=76.83 E-value=8.3 Score=28.12 Aligned_cols=67 Identities=13% Similarity=0.262 Sum_probs=51.1
Q ss_pred cCCcEEEEeecCCCcHHHHHHHHhcC-----CC--CCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q 030800 48 LDSKTLSINPYDPNTLKELESAIVSS-----PL--GLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQ 114 (171)
Q Consensus 48 ~~~~~l~I~p~d~~~i~~I~kAI~~s-----~l--~~~p~~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~ 114 (171)
.+|.-+++-.|.-..+.+.++|+..- .+ .++-..+|+.+.+.|.-+.+..|++|+|.|..+..++.+
T Consensus 79 gsgsgvm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~efni 152 (170)
T 4hhu_A 79 GSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFNI 152 (170)
T ss_dssp CTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEECSSEEEEEEESCCHHHHHHHHHHHHHHHHHHTC
T ss_pred eCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcce
Confidence 34566777789888888888887542 22 233447999999999999999999999999888766543
No 13
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=76.16 E-value=2.9 Score=27.27 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=30.6
Q ss_pred CcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 030800 78 NPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK 113 (171)
Q Consensus 78 ~p~~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K 113 (171)
+-..||+.+.+.|.-+.+..|++|+|.|..++.+..
T Consensus 34 tytldgndleiritgvpeqvrkelakeaerlakefn 69 (85)
T 2kl8_A 34 TYTLDGNDLEIRITGVPEQVRKELAKEAERLAKEFN 69 (85)
T ss_dssp EEEECSSCEEEEEESCCHHHHHHHHHHHHHHHHHTC
T ss_pred EEEecCCeeEEEEecChHHHHHHHHHHHHHHHHhcC
Confidence 344799999999999999999999999998876653
No 14
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=75.99 E-value=24 Score=26.87 Aligned_cols=70 Identities=19% Similarity=0.163 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030800 92 ALTKEHIQAMCKVVAKTSEDVK---QSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKA 163 (171)
Q Consensus 92 ~~T~E~R~~l~K~ak~~~e~~K---~~iR~iR~~~~~~lKk~~~~iseD~~~~~~~~iq~ltd~~i~~id~l~~~ 163 (171)
.+|+|.++++-+.-.++..+.. ..++..|.+....+-. ...++..++.+.+++.++..+...+--++..+
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a--~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~e 139 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA--SSPDTAKINAVAKEMESLGQKLDEQRVKRDVA 139 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999988766555444333 3444555544444432 45788888889999998888777665554443
No 15
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=74.58 E-value=28 Score=27.06 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030800 92 ALTKEHIQAMCKVVAKTSED---------VKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCK 162 (171)
Q Consensus 92 ~~T~E~R~~l~K~ak~~~e~---------~K~~iR~iR~~~~~~lKk~~~~iseD~~~~~~~~iq~ltd~~i~~id~l~~ 162 (171)
.+|+|--+.+++.+.++.++ +|+.+...--.+.+.++.....+++++...++..++.+.+-.-..=.+.++
T Consensus 118 ~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~~l~~~~~~l~~~~k~~i~~~l~~~~~~L~~~~~~~i~ 197 (219)
T 4e81_A 118 GLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIE 197 (219)
T ss_dssp SCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred cccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 58899999999888776552 222222222233333433334588888888888887775543322223344
Q ss_pred HHHHhh
Q 030800 163 AKEKEI 168 (171)
Q Consensus 163 ~KeKel 168 (171)
+|-++|
T Consensus 198 ~~~~~L 203 (219)
T 4e81_A 198 AKMQEL 203 (219)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 454444
No 16
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=72.63 E-value=2.2 Score=23.99 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=17.3
Q ss_pred EeCCCCCHHHHHHHHHHHHH
Q 030800 88 AAIPALTKEHIQAMCKVVAK 107 (171)
Q Consensus 88 v~iP~~T~E~R~~l~K~ak~ 107 (171)
+.+|-+|+|.|...++.+|.
T Consensus 13 Lh~~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 13 LHDPNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp HHCTTCCHHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHhHHHHHhc
Confidence 45899999999999998875
No 17
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=70.63 E-value=7.2 Score=25.50 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=27.5
Q ss_pred CCCeEEEeCCC-CCHHHHHHHHHHHHHHHHHHH
Q 030800 82 DGQRLIAAIPA-LTKEHIQAMCKVVAKTSEDVK 113 (171)
Q Consensus 82 dg~~i~v~iP~-~T~E~R~~l~K~ak~~~e~~K 113 (171)
.|.++++.+|. +|.|.+.+..+-++..++.+|
T Consensus 16 ~~KsL~Lf~P~gLt~~Q~~QW~~TIeav~qSak 48 (75)
T 2fqm_A 16 HGKTLRLTLPEGLSGEQKSQWMLTIKAVVQSAK 48 (75)
T ss_dssp TEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEeCCCCccHHHHHHHHHHHHHHHhhhc
Confidence 34588888774 899999999999999999887
No 18
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=70.03 E-value=38 Score=27.48 Aligned_cols=67 Identities=13% Similarity=0.206 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C---CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800 92 ALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKA--G---SSLPKDQMKRLEKEVDELTKKYVKSAD 158 (171)
Q Consensus 92 ~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~--~---~~iseD~~~~~~~~iq~ltd~~i~~id 158 (171)
.+++|.|+-+...+.+.....+...+..-.++.+.++.. . ..+|+++.....+..+.+.++|.+++.
T Consensus 236 ~L~~e~q~~i~~aa~~~~~~~~~~~~~~~~~~~~~l~~~~~G~~v~~~~~~~~~~~~~a~~~v~~~~~~~~g 307 (326)
T 3fxb_A 236 GLSAEDQQLVQNAALAAYDHTVVYQQQAADTELAKIMEAKPEMQVTVLTDEQRSCFKEAAAEVEAKFIEMTG 307 (326)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCTTCEEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 678999999999888888888888887777788888743 1 236888999999999999999988764
No 19
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=69.24 E-value=29 Score=27.04 Aligned_cols=59 Identities=8% Similarity=0.115 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 030800 106 AKTSEDVKQSIRRSRQKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYV--KSADDVCKAK 164 (171)
Q Consensus 106 k~~~e~~K~~iR~iR~~~~~~lKk~--~~~iseD~~~~~~~~iq~ltd~~i--~~id~l~~~K 164 (171)
..++.++|...-..|.+.++.|+.. ...+|++....+.+++.+|++..- ..|+.++++|
T Consensus 82 ~~yFae~RL~REq~Rsk~~E~L~eII~n~n~S~eeK~eA~~ql~eLt~~~ekE~~IE~LLKAK 144 (197)
T 3tuf_A 82 DDLFTTYRLDLEDARSKEREELNAIVSSDDATAKEKSEAYDKMTALSEVEGTEKQLETLIKTQ 144 (197)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3588999999999999999999875 245899999999999999998664 4566676654
No 20
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=66.26 E-value=14 Score=26.95 Aligned_cols=61 Identities=15% Similarity=0.303 Sum_probs=45.8
Q ss_pred EEeecCCCcHHHHHHHHhcC-----CC--CCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q 030800 54 SINPYDPNTLKELESAIVSS-----PL--GLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQ 114 (171)
Q Consensus 54 ~I~p~d~~~i~~I~kAI~~s-----~l--~~~p~~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~ 114 (171)
++-.|.-..+.+.++|+..- .+ .++-..+|+.+.+.|.-+.+..|++|+|.|..+..++.+
T Consensus 4 m~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~efni 71 (170)
T 4hhu_A 4 MVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFNI 71 (170)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcce
Confidence 44567677778888876542 22 233447999999999999999999999999988776654
No 21
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=64.26 E-value=52 Score=26.06 Aligned_cols=66 Identities=24% Similarity=0.251 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHH
Q 030800 92 ALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG---SSLPKDQMKRLEKEVDELTKKYVKSA 157 (171)
Q Consensus 92 ~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~---~~iseD~~~~~~~~iq~ltd~~i~~i 157 (171)
.+++|.|+-+...+.+.........+..-.++.+.+++.. ..+++++.....+..+.+.++|.++.
T Consensus 220 ~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~e~~~~~~~~~~~v~~~~~~~~ 288 (301)
T 2pfy_A 220 RLPAEVRQAVLDAGAKAEIRGWQTARAKTRELTDTLARNGMSVEPLPPQLAKELQAIGATMVSDWSKKA 288 (301)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888888888888777777777777777778887643 23677888888888888888887665
No 22
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=62.90 E-value=39 Score=27.53 Aligned_cols=66 Identities=12% Similarity=0.222 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHH
Q 030800 91 PALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG---SSLPKDQMKRLEKEVDELTKKYVKS 156 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~---~~iseD~~~~~~~~iq~ltd~~i~~ 156 (171)
=.+++|.|+-+...+++.........+..-.++.+.+++.. ..+++++.....+..+.+.+.+.++
T Consensus 238 ~~L~~e~q~~i~~a~~e~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~e~~~~~~~~~~~v~~~~~~~ 306 (328)
T 3u65_B 238 ARIPSRYHDAMLQAATRVRQRLANNLETLDRECSNNIQKAGVSIVHLTPQEIQEWRTEFAADVKRIQAR 306 (328)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999888888888888888888888753 3578888888888888877754443
No 23
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=56.22 E-value=73 Score=25.20 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHH
Q 030800 92 ALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG---SSLPKDQMKRLEKEVDELTKKYVKSA 157 (171)
Q Consensus 92 ~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~---~~iseD~~~~~~~~iq~ltd~~i~~i 157 (171)
.+++|.|+-+...+++.........+..-.++.+.+++.. ..+++++.....+..+.+.++|.++.
T Consensus 219 ~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~e~~~~~~~~~~~v~~~~~~~~ 287 (301)
T 2pfz_A 219 ALDPATQQALKKAGAQAEERGWKLSQEKNSWYKEQLAKNGMAIIAPTAELKSGLTEVGKRMLDDWLKKA 287 (301)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788999999888888888888877777777888887653 24688888888888899998887765
No 24
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=52.87 E-value=70 Score=28.36 Aligned_cols=63 Identities=19% Similarity=0.316 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHH
Q 030800 91 PALTKEHIQAMCKVVAKTSED---------VKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKY 153 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~e~---------~K~~iR~iR~~~~~~lKk~~~~iseD~~~~~~~~iq~ltd~~ 153 (171)
..+++|.-+.+++.+.++.++ +|+.+...--.+.+.+......+++++...++..++++.+-.
T Consensus 505 ~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (605)
T 4b9q_A 505 SGLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETAL 576 (605)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999988876654 222232222233333443334588888888888887765543
No 25
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=52.12 E-value=3.4 Score=23.82 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=16.4
Q ss_pred EeCCCCCHHHHHHHHHHHH
Q 030800 88 AAIPALTKEHIQAMCKVVA 106 (171)
Q Consensus 88 v~iP~~T~E~R~~l~K~ak 106 (171)
+.+|-+|+|.|...++.+|
T Consensus 18 Lh~~nLtEeQrn~yI~slk 36 (38)
T 1zda_A 18 LHDPNLNEEQRNAKIKSIR 36 (38)
T ss_dssp HSCSSSCTTHHHHHHHHHS
T ss_pred HcCCCCCHHHHHhHHHHhh
Confidence 5689999999999998765
No 26
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=50.91 E-value=83 Score=24.25 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 030800 91 PALTKEHIQAMCKVVAKTSEDVK---------QSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELT 150 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~e~~K---------~~iR~iR~~~~~~lKk~~~~iseD~~~~~~~~iq~lt 150 (171)
+.+|.|.-+.+++.+.++.++=+ +.+-..=-.+.+.+......+++++...++..++.+-
T Consensus 114 ~~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l~~~~~~~~~~~k~~i~~~l~~~~ 182 (227)
T 1u00_A 114 YGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLS 182 (227)
T ss_dssp SCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHH
Confidence 45899888888888877665322 2111111122222222223467777777766666554
No 27
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=50.38 E-value=34 Score=20.66 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=21.2
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 030800 85 RLIAAIPALTKEHIQAMCKVVAKTSED 111 (171)
Q Consensus 85 ~i~v~iP~~T~E~R~~l~K~ak~~~e~ 111 (171)
.|.|.++..|.|.+++|++.+-....+
T Consensus 2 ~I~I~~~grt~eqK~~L~~~it~~~~~ 28 (62)
T 3m20_A 2 VLIVYGPKLDVGKKREFVERLTSVAAE 28 (62)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 467777899999999999977665543
No 28
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=49.76 E-value=28 Score=23.82 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030800 91 PALTKEHIQAMCKVVAKTSEDVKQSIRRSRQ 121 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~ 121 (171)
|..+.|.|+..+..+....++|..-|+...-
T Consensus 29 ~~~~geerk~~i~~ie~~l~EA~ell~qMel 59 (102)
T 1vcs_A 29 PRLPPDEKKQMVANVEKQLEEARELLEQMDL 59 (102)
T ss_dssp GGSCTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456688999999999999999988777543
No 29
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=49.43 E-value=10 Score=28.95 Aligned_cols=65 Identities=9% Similarity=0.211 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800 92 ALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSAD 158 (171)
Q Consensus 92 ~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~~~iseD~~~~~~~~iq~ltd~~i~~id 158 (171)
.|++|.|.++... ....+.=..+|..||+++++|.-..+-+.-.....+.+.|+++++.+-....
T Consensus 3 ~~~k~~~~~~~~l--~~~~~~~~~LR~qrHdf~NkLqvI~GLlql~~ydea~~yI~~~~~~~q~~~~ 67 (192)
T 1ixm_A 3 DVSKNQEENISDT--ALTNELIHLLGHSRHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVIDAKHESK 67 (192)
T ss_dssp ----------CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3556666655433 2345666789999999999997542222333566677777777777766553
No 30
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=48.46 E-value=97 Score=24.65 Aligned_cols=65 Identities=12% Similarity=0.303 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcC---CCCChHHHHHHHHHHHHHHHHHHHH
Q 030800 92 ALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMM--KKAG---SSLPKDQMKRLEKEVDELTKKYVKS 156 (171)
Q Consensus 92 ~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~l--Kk~~---~~iseD~~~~~~~~iq~ltd~~i~~ 156 (171)
.+++|.|+-+...+.+.........+..-.++.+.+ ++.. ..+|+++.....+..+.+.++|.++
T Consensus 222 ~L~~~~q~~l~~a~~~a~~~~~~~~~~~~~~~~~~l~~~~~Gv~v~~~~~~~~~~~~~~~~~v~~~~~~~ 291 (316)
T 2vpn_A 222 GLSEEDQQLVQDAADAAYDHTIEHIKGLSEESLEKIKAASDEVTVTRLNDEQIQAFKERAPQVEEKFIEM 291 (316)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCTTCEEEECCHHHHHHHHTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCEEEeCCHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888777777777777776667777877 4432 2368888888888888888888764
No 31
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=48.04 E-value=1.1e+02 Score=24.83 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHH
Q 030800 93 LTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG---SSLPKDQMKRLEKEVDELTKKYVKS 156 (171)
Q Consensus 93 ~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~---~~iseD~~~~~~~~iq~ltd~~i~~ 156 (171)
+++|.|+-+...+.+.....+...+..-.++.+.++... ..+++|+.....+..+.+.++|.++
T Consensus 257 L~~~~q~~l~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~v~~~~~~~ 323 (365)
T 2hzl_A 257 LTPTYQSLLRTACHAADANMLQLYDWKNPTAIKSLVAQGTQLRPFSPEILQACFEAANEVYAEMEAS 323 (365)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHHHHHHHHcc
Confidence 788999888888888777777777777677777777643 1357787888888888888877653
No 32
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=46.97 E-value=68 Score=22.12 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=12.6
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 030800 133 SLPKDQMKRLEKEVDELTK 151 (171)
Q Consensus 133 ~iseD~~~~~~~~iq~ltd 151 (171)
.+++++...++..|+.+-+
T Consensus 42 kl~~eek~~I~~~i~el~~ 60 (120)
T 2p32_A 42 KISPEDKKKIEDKCDEILK 60 (120)
T ss_dssp GSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 4677777777777666554
No 33
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=45.63 E-value=67 Score=21.66 Aligned_cols=39 Identities=5% Similarity=0.154 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHH--hcCCCCChHHHHHHHHHHHHHHH
Q 030800 113 KQSIRRSRQKALDMMK--KAGSSLPKDQMKRLEKEVDELTK 151 (171)
Q Consensus 113 K~~iR~iR~~~~~~lK--k~~~~iseD~~~~~~~~iq~ltd 151 (171)
|+.+-+.-..+.+.|+ .+...+++++...++..|+.+-+
T Consensus 6 rN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~ 46 (113)
T 1ud0_A 6 SHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIIS 46 (113)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHH
Confidence 3333333333444444 34445888888888888877654
No 34
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=44.79 E-value=95 Score=27.48 Aligned_cols=61 Identities=21% Similarity=0.393 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH--HHHHH-------HHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 030800 91 PALTKEHIQAMCKVVAKTSEDVKQS--IRRSR-------QKALDMMKKAGSSLPKDQMKRLEKEVDELTK 151 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~e~~K~~--iR~iR-------~~~~~~lKk~~~~iseD~~~~~~~~iq~ltd 151 (171)
..+++|..+.+++.+.++.++=+.. ....| -.+.+.+......+++++...++..++.+.+
T Consensus 505 ~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 574 (605)
T 2kho_A 505 SGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALET 574 (605)
T ss_dssp SSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHH
Confidence 5689999999998888765543221 11111 1122222222234788888888888877654
No 35
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=44.27 E-value=77 Score=25.40 Aligned_cols=68 Identities=7% Similarity=0.198 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800 91 PALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSAD 158 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~~~iseD~~~~~~~~iq~ltd~~i~~id 158 (171)
-.+++|.|+-+...+.+..+..+...+..-.++.+.+++..-.+.+-+.....+..+.+.++|.++..
T Consensus 224 ~~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~a~~~v~~~~~~~~~ 291 (312)
T 2xwv_A 224 KELPEDLQKVVKDAAENAAKYHTKLFVDGEKDLVTFFEKQGVKITHPDLVPFKESMKPYYAEFVKQTG 291 (312)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCCSHHHHHHTHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEeccCHHHHHHHHHHHHHHHHHhcc
Confidence 47888999988888877777777777766667777777643223333445566667777888776654
No 36
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=43.58 E-value=50 Score=23.28 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=45.6
Q ss_pred EEEEeecC-CCcHHHHHHHHhcCCCCCCcc---cCCCeEEEeCCCCCHHHHHHHHHHHHHHHH
Q 030800 52 TLSINPYD-PNTLKELESAIVSSPLGLNPR---VDGQRLIAAIPALTKEHIQAMCKVVAKTSE 110 (171)
Q Consensus 52 ~l~I~p~d-~~~i~~I~kAI~~s~l~~~p~---~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e 110 (171)
.|.|..+| +.++.+|...|...+.|+.-. .+|. +.+.+|....+.-..+......+..
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~-i~~~~~~~~~~~~~~L~~~l~~i~~ 63 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR-IYLNFAELEFESFSSLMAEIRRIAG 63 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE-EEEEECCCCHHHHHHHHHHHHHSTT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE-EEEEEEeCCHHHHHHHHHHHHcCCC
Confidence 46778887 889999999999998766543 3444 9999999988888888887777553
No 37
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=41.91 E-value=79 Score=21.41 Aligned_cols=41 Identities=7% Similarity=0.155 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHh--cCCCCChHHHHHHHHHHHHHHH
Q 030800 111 DVKQSIRRSRQKALDMMKK--AGSSLPKDQMKRLEKEVDELTK 151 (171)
Q Consensus 111 ~~K~~iR~iR~~~~~~lKk--~~~~iseD~~~~~~~~iq~ltd 151 (171)
++|+.+-..=..+.+.|+. +...+++++...++..++.+.+
T Consensus 9 eakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~ 51 (113)
T 3lof_A 9 SAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVIS 51 (113)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHH
Confidence 4444444443334444443 3345777777777777776643
No 38
>1usp_A Organic hydroperoxide resistance protein; oxidoreductase, 2-Cys peroxidase; 1.9A {Deinococcus radiodurans} SCOP: d.227.1.1 PDB: 1usp_B
Probab=39.89 E-value=27 Score=24.66 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=21.5
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHH
Q 030800 85 RLIAAIPALTKEHIQAMCKVVAKTSE 110 (171)
Q Consensus 85 ~i~v~iP~~T~E~R~~l~K~ak~~~e 110 (171)
.+.|.+|.+++|.+++++..|.+.|=
T Consensus 97 ~~~v~~~~~~~e~~~~l~~~a~~~Cp 122 (139)
T 1usp_A 97 ELEGHFPGLSREQAEGLMHAAHEVCP 122 (139)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHCH
T ss_pred EEEEEECCCCHHHHHHHHHHHHhhCc
Confidence 35677888999999999998887664
No 39
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=39.12 E-value=8.1 Score=29.32 Aligned_cols=31 Identities=10% Similarity=0.336 Sum_probs=29.4
Q ss_pred CCCcHHHHHHHHhcCCCCCCcccCCCeEEEe
Q 030800 59 DPNTLKELESAIVSSPLGLNPRVDGQRLIAA 89 (171)
Q Consensus 59 d~~~i~~I~kAI~~s~l~~~p~~dg~~i~v~ 89 (171)
|....+.|.+.|.+|.+-++++..|+.+||+
T Consensus 103 ~~e~AKkIvK~IKdsklKVqa~IQGd~vRVt 133 (163)
T 1in0_A 103 ETEMAKKITKLVKDSKIKVQTQIQGEQVRVT 133 (163)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHhcCCcceeEecCcEEEEe
Confidence 7889999999999999999999999999985
No 40
>2bjo_A Organic hydroperoxide resistance protein OHRB; heat shock protein, oxidor; 2.10A {Bacillus subtilis}
Probab=37.14 E-value=31 Score=24.22 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=21.3
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHH
Q 030800 85 RLIAAIPALTKEHIQAMCKVVAKTSE 110 (171)
Q Consensus 85 ~i~v~iP~~T~E~R~~l~K~ak~~~e 110 (171)
.+.+.+|.+++|..++++..|.+.|=
T Consensus 95 ~~~v~~~~~~~e~~~~l~~~a~~~Cp 120 (136)
T 2bjo_A 95 TLVVNTKDLDREKAQELVNAAHEFCP 120 (136)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHCH
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHhCc
Confidence 34668999999999999999887664
No 41
>1qwi_A OSMC, osmotically inducible protein; hydroperoxide resistance, hydroperoxide reductase; 1.80A {Escherichia coli} SCOP: d.227.1.1
Probab=36.92 E-value=33 Score=24.41 Aligned_cols=25 Identities=8% Similarity=0.170 Sum_probs=21.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHH
Q 030800 86 LIAAIPALTKEHIQAMCKVVAKTSE 110 (171)
Q Consensus 86 i~v~iP~~T~E~R~~l~K~ak~~~e 110 (171)
+.|.+|.+++|.+++++..|.+.|=
T Consensus 102 ~~v~~~~~~~e~~~~l~~~a~~~Cp 126 (143)
T 1qwi_A 102 SEVAVPGIDASTFDGIIQKAKAGCP 126 (143)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHSH
T ss_pred EEEEeCCCCHHHHHHHHHHHHccCc
Confidence 5667899999999999998887663
No 42
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=36.81 E-value=81 Score=21.01 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030800 136 KDQMKRLEKEVDELTKKYVKSADDVCKA 163 (171)
Q Consensus 136 eD~~~~~~~~iq~ltd~~i~~id~l~~~ 163 (171)
.|-..+++.++++..+-..+.+|+++..
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~R 31 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLER 31 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555555555555555555554443
No 43
>1n2f_A Organic hydroperoxide resistance protein; peroxide reductase, oxidoreductase; 2.01A {Pseudomonas aeruginosa} SCOP: d.227.1.1
Probab=36.47 E-value=32 Score=24.43 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=21.7
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHHHHH
Q 030800 85 RLIAAIPALTKEHIQAMCKVVAKTSE 110 (171)
Q Consensus 85 ~i~v~iP~~T~E~R~~l~K~ak~~~e 110 (171)
.+.|.+|.+++|.+++++..|.+.|=
T Consensus 100 ~~~v~~~~~~~e~~~~l~~~a~~~Cp 125 (142)
T 1n2f_A 100 ELHINLPGMEREAAEALVAAAHQVCP 125 (142)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHCH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHhCc
Confidence 36777899999999999998887664
No 44
>2ql8_A Putative redox protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.50A {Lactobacillus casei}
Probab=35.57 E-value=29 Score=24.76 Aligned_cols=25 Identities=4% Similarity=0.090 Sum_probs=21.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHH
Q 030800 86 LIAAIPALTKEHIQAMCKVVAKTSE 110 (171)
Q Consensus 86 i~v~iP~~T~E~R~~l~K~ak~~~e 110 (171)
+.|.+|.+++|.++.|+..|.+.|=
T Consensus 98 ~~v~~~g~~~e~~~~l~~~a~~~Cp 122 (143)
T 2ql8_A 98 AQVMVKGVDFDTAKAFTNEIENRCP 122 (143)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHCH
T ss_pred EEEEECCCCHHHHHHHHHHHHhcCc
Confidence 6677888999999999998876664
No 45
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=34.63 E-value=1.8e+02 Score=23.48 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHH
Q 030800 93 LTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG---SSLPKDQMKRLEKEVDELTKKYVK 155 (171)
Q Consensus 93 ~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~---~~iseD~~~~~~~~iq~ltd~~i~ 155 (171)
+++|.|+-+...+.+.....+...+..-.++.+.+++.. ..+|+++.....+..+.+.++|.+
T Consensus 264 L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~v~~~~~~ 329 (361)
T 2zzv_A 264 LPKPLQERFIAAVHEYSWIHYAGIQKANLEAWPKYRQAGVEVIRLSNEDVRKFRRLAIPIWFKWAK 329 (361)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 788888888887777777777777766667777776543 236778888888888888887743
No 46
>3qwo_C Motavizumab epitope scaffold; immune complex, immune system; HET: EDO; 1.90A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=34.07 E-value=23 Score=22.06 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=19.4
Q ss_pred EeCCCCCHHHHHHHHHHHHHHHHHH
Q 030800 88 AAIPALTKEHIQAMCKVVAKTSEDV 112 (171)
Q Consensus 88 v~iP~~T~E~R~~l~K~ak~~~e~~ 112 (171)
+.+|-+|+|.|...++.+|.--..+
T Consensus 14 l~lpnLtEeqRn~yI~slkdDPs~S 38 (57)
T 3qwo_C 14 ANLPNLNEEQRSAFLSSINDDPSQS 38 (57)
T ss_dssp HHCTTCCHHHHHHHHHHHHHCGGGH
T ss_pred HcCCCcchhhccchHhhhccCcchh
Confidence 4589999999999998887644443
No 47
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=34.06 E-value=1.1e+02 Score=27.66 Aligned_cols=68 Identities=9% Similarity=0.145 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030800 97 HIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKE 167 (171)
Q Consensus 97 ~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~~~iseD~~~~~~~~iq~ltd~~i~~id~l~~~KeKe 167 (171)
.|+.++|.+ -++....+..+|.+..+.+...-........+.++..++..++.--..++.++..|++.
T Consensus 589 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 656 (695)
T 2j69_A 589 ARRELVKTA---KKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQTR 656 (695)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 588888876 55566677777777774443321001222334577888888888888888888888764
No 48
>1zb9_A OHR, organic hydroperoxide resistance protein; oxidoreductase; HET: PE4; 1.80A {Xylella fastidiosa} PDB: 1zb8_A*
Probab=33.14 E-value=40 Score=23.98 Aligned_cols=26 Identities=12% Similarity=0.232 Sum_probs=21.6
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHH
Q 030800 86 LIAAIPALTKEHIQAMCKVVAKTSED 111 (171)
Q Consensus 86 i~v~iP~~T~E~R~~l~K~ak~~~e~ 111 (171)
+.|.+|.+++|..++++..|.+.|==
T Consensus 102 ~~v~~~~~~~e~~~~l~~~a~~~Cpv 127 (143)
T 1zb9_A 102 LRIAVSGMERSMLQTLVDKAHRVCPY 127 (143)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHCHH
T ss_pred EEEEECCCCHHHHHHHHHHHHhhCcH
Confidence 66778999999999999988876643
No 49
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=32.14 E-value=1.3e+02 Score=24.22 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHH
Q 030800 92 ALTKEHIQAMCKVVAKTSEDVKQSIR-RSRQKALDMMKKAG---SSLPKDQMKRLEKEVDELTKKYVK 155 (171)
Q Consensus 92 ~~T~E~R~~l~K~ak~~~e~~K~~iR-~iR~~~~~~lKk~~---~~iseD~~~~~~~~iq~ltd~~i~ 155 (171)
.+++|.|+-+...+.+.....+...+ ..-.++.+.+++.. ..+|+++.....+..+.+.++|..
T Consensus 240 ~L~~e~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~a~~~v~~~~~~ 307 (327)
T 2hpg_A 240 SLPKEYQKIIEEEMDKAGIEVSLKIMKELEEEYKQKCIEKGMAVIPASEIDKEAFMEKAKQAYKNLGL 307 (327)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCEEECGGGSCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCChhhHHHHHHHHHHHHHHHhc
Confidence 56788888888877777777777777 66666777777643 134577788888888888887744
No 50
>1nye_A Osmotically inducible protein C; OSMC, structural genomics, peroxiredoxin, BSGC structure funded by NIH, protein structure initiative, PSI; 2.40A {Escherichia coli} SCOP: d.227.1.1
Probab=31.00 E-value=45 Score=24.44 Aligned_cols=25 Identities=8% Similarity=0.170 Sum_probs=21.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHH
Q 030800 86 LIAAIPALTKEHIQAMCKVVAKTSE 110 (171)
Q Consensus 86 i~v~iP~~T~E~R~~l~K~ak~~~e 110 (171)
+.|.+|.+++|.+++++..|.+.|=
T Consensus 121 ~~v~~~g~~~e~~~~l~~~A~~~Cp 145 (162)
T 1nye_A 121 SEVAVPGIDASTFDGIIQKAKAGCP 145 (162)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHSH
T ss_pred EEEEECCCCHHHHHHHHHHHHhcCc
Confidence 5667899999999999998887663
No 51
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=30.94 E-value=1.6e+02 Score=22.46 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=36.5
Q ss_pred CCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030800 92 ALTKEHIQAM----CKVVAKTSEDVKQSIRRSRQKALDMMKKA-G-SSLPKDQMKRLEKEVDELTKKYVKSADDVCK 162 (171)
Q Consensus 92 ~~T~E~R~~l----~K~ak~~~e~~K~~iR~iR~~~~~~lKk~-~-~~iseD~~~~~~~~iq~ltd~~i~~id~l~~ 162 (171)
.||+++|..| .+.|....++-...-..-|+.++..=.+. . .+ |+ .+|+.+...+-..|+.+-.
T Consensus 8 kmt~~Rk~~Lk~lll~kA~e~L~~E~e~k~eeKkkiLaER~kPLnid~-se-------~~L~e~ckELh~~I~~LEe 76 (182)
T 1ytz_I 8 RAATARRQHLKSAMLQLAVTEIEKEAAAKEVEKQNYLAEHSPPLSLPG-SM-------QELQELSKKLHAKIDSVDE 76 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCC-SH-------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CH-------HHHHHHHHHHHHHHHHHHH
Confidence 4788887765 45566666666666777777776653332 1 22 43 3455555555555555433
No 52
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.53 E-value=84 Score=18.33 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=21.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030800 133 SLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168 (171)
Q Consensus 133 ~iseD~~~~~~~~iq~ltd~~i~~id~l~~~KeKel 168 (171)
++|+|+.-..-+.|+.-..+.-++|.+ +..|.++|
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~~-lqkKlkeL 35 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQISK-LKKKQQQL 35 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 356677666666666666666666664 44555554
No 53
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=28.96 E-value=1.9e+02 Score=21.99 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=33.0
Q ss_pred CCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CCCChHHHHH
Q 030800 92 ALTKEHIQAM----CKVVAKTSEDVKQSIRRSRQKALDMMKKA-G-SSLPKDQMKR 141 (171)
Q Consensus 92 ~~T~E~R~~l----~K~ak~~~e~~K~~iR~iR~~~~~~lKk~-~-~~iseD~~~~ 141 (171)
.||+++|..| .+.|....++-+.....-|+.++..--+. . .++|+|.+..
T Consensus 10 ~mt~~Rk~~Lk~lll~kA~e~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e 65 (180)
T 1j1e_C 10 KISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQD 65 (180)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 6899998765 55667777777777778888887754332 1 3456665433
No 54
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=28.40 E-value=48 Score=27.79 Aligned_cols=52 Identities=17% Similarity=0.325 Sum_probs=40.9
Q ss_pred cHHHHHHHHhcCCCCCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 030800 62 TLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK 113 (171)
Q Consensus 62 ~i~~I~kAI~~s~l~~~p~~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K 113 (171)
....+.+++.+.++-+++...+..+++.++..|.|.-+.++..+++..+..+
T Consensus 387 ~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~ 438 (497)
T 3mc6_A 387 NIHELSDRLSKKGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQELK 438 (497)
T ss_dssp THHHHHHHHHTTTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 4678888898888777666556678999998999988888888887766543
No 55
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=28.10 E-value=1.7e+02 Score=21.14 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=33.8
Q ss_pred CCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CCCChHHHHH
Q 030800 92 ALTKEHIQAM----CKVVAKTSEDVKQSIRRSRQKALDMMKKA-G-SSLPKDQMKR 141 (171)
Q Consensus 92 ~~T~E~R~~l----~K~ak~~~e~~K~~iR~iR~~~~~~lKk~-~-~~iseD~~~~ 141 (171)
.||.++|..| .+.|....++-+..-..-|+.++..--+. . .++|+|+...
T Consensus 10 ~mt~~Rk~~Lk~lll~kA~e~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e 65 (133)
T 1j1d_C 10 KISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQD 65 (133)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 6899998764 55677777777777778888887754432 2 4567665443
No 56
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=27.92 E-value=1.1e+02 Score=19.04 Aligned_cols=41 Identities=17% Similarity=0.494 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHH
Q 030800 113 KQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVK 155 (171)
Q Consensus 113 K~~iR~iR~~~~~~lKk~~~~iseD~~~~~~~~iq~ltd~~i~ 155 (171)
...|-..|+.....+.+. |++...+=....++|.+...|..
T Consensus 7 ~~~IE~kR~eL~~l~~k~--Gl~~~~vI~~SQeLD~LIn~Y~k 47 (62)
T 2bzb_A 7 KNKIENKKKELIQLVARH--GLDHDKVLLFSRDLDKLINKFMN 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 345666788888877754 68889999999999999999975
No 57
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=27.70 E-value=1e+02 Score=18.52 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=20.2
Q ss_pred eEEEeCCC----CCHHHHHHHHHHHHHHHHH
Q 030800 85 RLIAAIPA----LTKEHIQAMCKVVAKTSED 111 (171)
Q Consensus 85 ~i~v~iP~----~T~E~R~~l~K~ak~~~e~ 111 (171)
.|.|.+.+ .|.|.+++|++.+-+...+
T Consensus 2 ~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~ 32 (67)
T 3m21_A 2 FINIKLVPENGGPTNEQKQQLIEGVSDLMVK 32 (67)
T ss_dssp EEEEEECCBTTBSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46677664 8999999999977665543
No 58
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=27.64 E-value=2.3e+02 Score=22.69 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=37.4
Q ss_pred cHHHHHHHHhcCCCCCCc-c--------cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 030800 62 TLKELESAIVSSPLGLNP-R--------VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDV 112 (171)
Q Consensus 62 ~i~~I~kAI~~s~l~~~p-~--------~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~ 112 (171)
....+...+.+.++-+.| . ..+..||+.++.+|+|.-++.++..++...++
T Consensus 356 ~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 356 VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 356777778888776666 1 23468999998789998888888777766544
No 59
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=26.56 E-value=3.5e+02 Score=24.26 Aligned_cols=62 Identities=5% Similarity=0.032 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHH
Q 030800 90 IPALTKEHIQAMCKVVAKTSEDVKQS---------IRRSRQKALDMMKK-AGSSLPKDQMKRLEKEVDELTK 151 (171)
Q Consensus 90 iP~~T~E~R~~l~K~ak~~~e~~K~~---------iR~iR~~~~~~lKk-~~~~iseD~~~~~~~~iq~ltd 151 (171)
.+.+|+|..+.+++.+.++.++=+.. +-..=-++.+.|.. +...+++++...++..++.+-+
T Consensus 521 ~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 592 (675)
T 3d2f_A 521 TFGLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEE 592 (675)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 35899999999999888776543221 11111112222221 1234788888888888877654
No 60
>1ukk_A Osmotically inducible protein C; peroxidase, cysteinesulfinic acid, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.60A {Thermus thermophilus} SCOP: d.227.1.1
Probab=26.21 E-value=31 Score=24.60 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=20.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHH
Q 030800 86 LIAAIPALTKEHIQAMCKVVAKTS 109 (171)
Q Consensus 86 i~v~iP~~T~E~R~~l~K~ak~~~ 109 (171)
++|.+|.+++|.+++++..|.+.|
T Consensus 100 ~~v~~~~~~~e~~~~l~~~a~~~C 123 (142)
T 1ukk_A 100 TEAEVPGISSEKFLEIAEAAKEGC 123 (142)
T ss_dssp EEEECTTCCHHHHHHHHHHHTTSS
T ss_pred EEEEeCCCCHHHHHHHHHHHHhcC
Confidence 667789999999999998887655
No 61
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=25.82 E-value=89 Score=19.68 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=36.2
Q ss_pred EEEeecC-CCcHHHHHHHHhcCCCCCCc---cc-CCC---eEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 030800 53 LSINPYD-PNTLKELESAIVSSPLGLNP---RV-DGQ---RLIAAIPALTKEHIQAMCKVVAKTSED 111 (171)
Q Consensus 53 l~I~p~d-~~~i~~I~kAI~~s~l~~~p---~~-dg~---~i~v~iP~~T~E~R~~l~K~ak~~~e~ 111 (171)
|.|...| |..+..|...|.+.+.|+.- .. +|. .+.+.+|. .+..+++.+...+++++
T Consensus 8 l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~--~~~l~~l~~~L~~~~~~ 72 (91)
T 1zpv_A 8 ITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE--KQDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS--CCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC--CCCHHHHHHHHHHHHHH
Confidence 4555554 99999999999999876632 22 232 34444554 24566677766666654
No 62
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=25.73 E-value=1.8e+02 Score=20.60 Aligned_cols=19 Identities=26% Similarity=0.210 Sum_probs=15.4
Q ss_pred eEEEeCCCCCHHHHHHHHH
Q 030800 85 RLIAAIPALTKEHIQAMCK 103 (171)
Q Consensus 85 ~i~v~iP~~T~E~R~~l~K 103 (171)
...+.+|+++.+...+++.
T Consensus 177 ~~~i~l~~l~~~e~~~~l~ 195 (250)
T 1njg_A 177 CLQFHLKALDVEQIRHQLE 195 (250)
T ss_dssp SEEEECCCCCHHHHHHHHH
T ss_pred hhhccCCCCCHHHHHHHHH
Confidence 4688999999988777765
No 63
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=24.02 E-value=1.3e+02 Score=23.91 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCCCCCccc---------CCCeEEEeCCC-----CCHHHHHHHHHHHHHHHHH
Q 030800 63 LKELESAIVSSPLGLNPRV---------DGQRLIAAIPA-----LTKEHIQAMCKVVAKTSED 111 (171)
Q Consensus 63 i~~I~kAI~~s~l~~~p~~---------dg~~i~v~iP~-----~T~E~R~~l~K~ak~~~e~ 111 (171)
...+...+.+.++-+.|.. .+..+|+.+|. .|+|.-+.++...++...+
T Consensus 325 ~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 325 GKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp HHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 4567777777776444421 24579999875 7899888888888877765
No 64
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=23.82 E-value=2.8e+02 Score=22.22 Aligned_cols=71 Identities=14% Similarity=0.081 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030800 91 PALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG---SSLPKDQMKRLEKEVDELTKKYVKSADDVC 161 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~---~~iseD~~~~~~~~iq~ltd~~i~~id~l~ 161 (171)
|.+|.|-|.-|.-.-|...-.-|.+.|-+-.--.+.-.+.. ..+-.+-..+++++|..+.+.-+.-+|..+
T Consensus 62 ~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i~~yr~kIe~EL~~iC~dil~lld~~L 135 (261)
T 3ubw_A 62 VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHL 135 (261)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999988888888888888877532222111100 001223344566667777666666666543
No 65
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=23.67 E-value=2.2e+02 Score=20.95 Aligned_cols=75 Identities=15% Similarity=0.251 Sum_probs=44.8
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 030800 86 LIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMM---KKAGSSLPKDQMKRLEKEVDELTKKYVKSADDV 160 (171)
Q Consensus 86 i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~l---Kk~~~~iseD~~~~~~~~iq~ltd~~i~~id~l 160 (171)
++=.|.|+|.|.+..+.+.+..+-++..-.+=.+|....-.+ +..-....++...++.-.++++.......++++
T Consensus 78 l~~~L~P~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~~eeL 155 (165)
T 1gs9_A 78 LEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDL 155 (165)
T ss_dssp HTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 455678999999988888766665555555555554443333 322123455555566666666666655555554
No 66
>3cje_A OSMC-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; HET: MSE; 1.70A {Jannaschia SP}
Probab=23.32 E-value=73 Score=23.12 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=21.0
Q ss_pred eEEEeCCC-CCHHHHHHHHHHHHHHHH
Q 030800 85 RLIAAIPA-LTKEHIQAMCKVVAKTSE 110 (171)
Q Consensus 85 ~i~v~iP~-~T~E~R~~l~K~ak~~~e 110 (171)
.+.|.||. +++|.+++|+..|.+.|=
T Consensus 117 ~~~v~~~~~~~~e~~~~l~~~a~~~Cp 143 (167)
T 3cje_A 117 EIDIILHSPDPIEAQQALIEAAKKGCF 143 (167)
T ss_dssp EEEEECCCCSCHHHHHHHHHHHHHHCH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHcCc
Confidence 46777886 999999999998876653
No 67
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=23.29 E-value=2.3e+02 Score=20.89 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=39.2
Q ss_pred cEEEEeec-CCCcHHHHHHHHhcCCCCCC-----cccCCC--eEEEeCCCCCHHHHHHHHHHHHHH
Q 030800 51 KTLSINPY-DPNTLKELESAIVSSPLGLN-----PRVDGQ--RLIAAIPALTKEHIQAMCKVVAKT 108 (171)
Q Consensus 51 ~~l~I~p~-d~~~i~~I~kAI~~s~l~~~-----p~~dg~--~i~v~iP~~T~E~R~~l~K~ak~~ 108 (171)
++|.|... .|..+..|...+...++|+. |..++. .+.+.+. -+.+..+++.++..++
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~d~~~leqI~kqL~Kl 68 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-GDEKVLEQIEKQLHKL 68 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-SCHHHHHHHHHHHHHS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-ccHHHHHHHHHHHcCC
Confidence 56777766 49999999999999988875 333433 3444553 3466777777776654
No 68
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=23.28 E-value=2.8e+02 Score=21.88 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030800 91 PALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMM-KKAGS--SLPKDQMKRLEKEVDELTKKYVKSADDVC 161 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~l-Kk~~~--~iseD~~~~~~~~iq~ltd~~i~~id~l~ 161 (171)
|.+|.|-|.-|.-.-|...-.-|.+.|-+-.--.+.- +.... .+-++-..+++++|..+.+..+.-+|..+
T Consensus 39 ~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~L 112 (236)
T 3iqu_A 39 EELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHL 112 (236)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred CcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5799999999999888888888888888854222221 11111 23345556677888888888777777654
No 69
>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X*
Probab=22.96 E-value=26 Score=24.68 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=39.4
Q ss_pred ccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCccc-------CCCeEEEeCCCCCHHHHHHHHHHHH
Q 030800 37 MPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPRV-------DGQRLIAAIPALTKEHIQAMCKVVA 106 (171)
Q Consensus 37 ~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~~-------dg~~i~v~iP~~T~E~R~~l~K~ak 106 (171)
+||.+|- .+.++ .||+..+..+..+|...++-++|.. +|..-+. -+.-++|-+..+.+.
T Consensus 17 IPi~~I~---~p~~~-----~~d~~kv~eL~~SI~~~Gl~l~PI~Vr~~~g~~~~~~Y~---li~G~hRl~A~k~Lg 82 (110)
T 1xw3_A 17 VPLSVLI---RPLPS-----VLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFY---SFGGCHRYAAYQQLQ 82 (110)
T ss_dssp EEGGGEE---CCSCC-----CCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEE---CCSCHHHHHHHHHTT
T ss_pred eCHHHcc---CCCCC-----ccCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcEE---EEcchHHHHHHHHcC
Confidence 5555544 45554 7899999999999999988777751 1222222 356778877766543
No 70
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=22.93 E-value=1.3e+02 Score=18.12 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030800 96 EHIQAMCKVVAKTSEDVKQSIRRSRQK 122 (171)
Q Consensus 96 E~R~~l~K~ak~~~e~~K~~iR~iR~~ 122 (171)
+-|+++.+.=+ ..|.||..|..+|+.
T Consensus 12 ~Aqe~iLr~Er-ELEeAr~~La~iR~~ 37 (50)
T 2qdq_A 12 AAQEEMLRKER-ELEEARKKLAQIRQQ 37 (50)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34666666544 489999999999975
No 71
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=22.90 E-value=91 Score=21.34 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=27.6
Q ss_pred EEEeecCC------CcHHHHHHHHhcCCCCCCcccCCCeEEEe
Q 030800 53 LSINPYDP------NTLKELESAIVSSPLGLNPRVDGQRLIAA 89 (171)
Q Consensus 53 l~I~p~d~------~~i~~I~kAI~~s~l~~~p~~dg~~i~v~ 89 (171)
|.|.|... .++..+.+.|.+|+|.+....-|+.|.=.
T Consensus 10 ~sv~Plg~~~~svs~~Va~~i~~i~~sGl~y~~~pm~T~IEGe 52 (104)
T 1lxj_A 10 VCMVPIGTDSASISDFVALIEKKIRESPLKSTLHSAGTTIEGP 52 (104)
T ss_dssp EEEEEESCSCSCCHHHHHHHHHHHHTSSSEEEEETTEEEEEEE
T ss_pred EEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEeCCCccEEEcC
Confidence 55567642 46777788888999998888888888854
No 72
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=22.84 E-value=1.6e+02 Score=23.17 Aligned_cols=68 Identities=9% Similarity=0.158 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 030800 91 PALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSADD 159 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id~ 159 (171)
|.+|.|-|.-|.-.-|-....-|.+.|-+-.--.+. +... ..+-++-..++++++..+.+.-+.-+|.
T Consensus 41 ~eLt~EERnLLSvAYKNvig~rR~swRiissiEqke-k~~~~~~~~i~~yr~kie~EL~~iC~dil~lld~ 110 (227)
T 2o8p_A 41 SEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQ-LNNDELVKICSEYVFSLRKDIKAFLQSFEDCVDR 110 (227)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 468999999999999988888888888886533222 1100 0012223334555555555555555543
No 73
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=22.59 E-value=3e+02 Score=22.02 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030800 90 IPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG---SSLPKDQMKRLEKEVDELTKKYVKSADDVC 161 (171)
Q Consensus 90 iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~---~~iseD~~~~~~~~iq~ltd~~i~~id~l~ 161 (171)
.|.+|.|-|.-|.-.-|...-.-|.+.|-+-.--.+.-.+.. ..+-.+-..+++++|..+.+..+.-||..+
T Consensus 61 ~~eLt~EERnLLSvAyKNvIg~rR~swRiissieqke~~k~~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~L 135 (260)
T 2npm_A 61 SEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRNAEDASKMCGKYRSKVEAELTDICNDILTMLDKHL 135 (260)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 467999999999999999998889988888541111100000 001223444566777777777777666644
No 74
>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein ST initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.48.1
Probab=22.42 E-value=34 Score=23.34 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=26.6
Q ss_pred EEEeecCC------CcHHHHHHHHhcCCCCCCcccCCCeEEE
Q 030800 53 LSINPYDP------NTLKELESAIVSSPLGLNPRVDGQRLIA 88 (171)
Q Consensus 53 l~I~p~d~------~~i~~I~kAI~~s~l~~~p~~dg~~i~v 88 (171)
|.+.|... .++..+.+.|++|+|.+....-|+.|.=
T Consensus 6 ~sv~Plg~~~~svs~~Va~~i~~i~~sgl~y~~~pm~T~iEG 47 (99)
T 1lxn_A 6 LTVIPLGTCSTSLSSYVAAAVEALKKLNVRYEISGMGTLLEA 47 (99)
T ss_dssp EEEEESSCSSSCCHHHHHHHHHHHTTSSCEEEEETTEEEEEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHcCCCeEeCCCeeEEEC
Confidence 55667643 4667777888889998888888887774
No 75
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=21.66 E-value=25 Score=22.75 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=20.8
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHH
Q 030800 81 VDGQRLIAAIPALTKEHIQAMCKVVA 106 (171)
Q Consensus 81 ~dg~~i~v~iP~~T~E~R~~l~K~ak 106 (171)
.+|..|.||+.+|+.|-++-+-+...
T Consensus 34 ~nGv~I~VP~~klS~~D~~yve~~~g 59 (68)
T 2hbp_A 34 ANGVKIAVAADKLSNEDLAYVEKITG 59 (68)
T ss_dssp TTSCEEEEETTSBCHHHHHHHHHHHS
T ss_pred cCCcEEEeEhHHcCHHHHHHHHHHhc
Confidence 47889999999999998876655443
No 76
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=21.12 E-value=1.6e+02 Score=19.80 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=55.3
Q ss_pred ccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCC-CCCcc-cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q 030800 37 MPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPL-GLNPR-VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQ 114 (171)
Q Consensus 37 ~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l-~~~p~-~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~ 114 (171)
.+.++||... -.+++.+..+.+.+.+.++ --.+. .|+....| .+|++-++.+ +.+..
T Consensus 46 ~t~~eLa~~l----------~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~---~LT~~G~~~~--------~~~~~ 104 (145)
T 3g3z_A 46 RTQKHIGEKW----------SLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLL---SLTETGKAYA--------APLTE 104 (145)
T ss_dssp BCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCE---EECHHHHHHH--------HHHHH
T ss_pred CCHHHHHHHH----------CCCHHHHHHHHHHHHHCCCEeeccCCCCCceeee---eEChhHHHHH--------HHHHH
Confidence 5666666542 2467788888888888886 33333 24444444 4577766632 22222
Q ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800 115 SIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSAD 158 (171)
Q Consensus 115 ~iR~iR~~~~~~lKk~~~~iseD~~~~~~~~iq~ltd~~i~~id 158 (171)
.++....... . .+++++...+..-++++.+..-+.++
T Consensus 105 ~~~~~~~~~~---~----~l~~~e~~~l~~~l~~l~~~l~~~~~ 141 (145)
T 3g3z_A 105 SAQEFSDKVF---A----TFGDKRTTRLFADLDALAEVMEKTIS 141 (145)
T ss_dssp HHHHHHHHHH---H----HHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---H----HcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 2 26888888888888888777766655
No 77
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=21.02 E-value=3e+02 Score=21.52 Aligned_cols=71 Identities=14% Similarity=0.081 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030800 91 PALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG---SSLPKDQMKRLEKEVDELTKKYVKSADDVC 161 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~---~~iseD~~~~~~~~iq~ltd~~i~~id~l~ 161 (171)
|.+|.|-|.-|.-.-|...-.-|.+.|-+-.--.+.-.+.. ..+-++-..+++++|..+.+..+.-||..+
T Consensus 36 ~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~~~~~i~~yr~kie~EL~~iC~~il~lld~~L 109 (234)
T 2br9_A 36 VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHL 109 (234)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 56999999999999999998888888887542221110100 012234455567777777777777776654
No 78
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=20.60 E-value=3.3e+02 Score=21.75 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030800 91 PALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMM-KKAG--SSLPKDQMKRLEKEVDELTKKYVKSADDVC 161 (171)
Q Consensus 91 P~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~l-Kk~~--~~iseD~~~~~~~~iq~ltd~~i~~id~l~ 161 (171)
|.+|.|-|.-|.-.-|...-.-|.+.|-+-.--.+.- |... ..+-.+-..+++++|..+.+..+.-||..+
T Consensus 41 ~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~L 114 (260)
T 1o9d_A 41 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVNSIREYRSKIENELSKICDGILKLLDAKL 114 (260)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 5799999999999988888888888888765222110 0000 001223345566777777777766666644
No 79
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=20.59 E-value=1.7e+02 Score=18.36 Aligned_cols=44 Identities=11% Similarity=0.291 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800 113 KQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSAD 158 (171)
Q Consensus 113 K~~iR~iR~~~~~~lKk~~~~iseD~~~~~~~~iq~ltd~~i~~id 158 (171)
...|-..|+...+.+.+ .|++...+=....++|.+...|.....
T Consensus 7 ~~~IE~kR~eL~~l~~k--~Gl~~~~vI~~SQeLD~LIn~Y~k~~~ 50 (64)
T 2c0s_A 7 NDRIEAKKKELIYLVEK--YGFTHHKVISFSQELDRLLNLLIELKT 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHH--TCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888888865 368888999999999999999997654
No 80
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=20.44 E-value=2.1e+02 Score=19.49 Aligned_cols=92 Identities=8% Similarity=0.092 Sum_probs=51.9
Q ss_pred CccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCC-CCCcc-cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 030800 34 GVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPL-GLNPR-VDGQRLIAAIPALTKEHIQAMCKVVAKTSED 111 (171)
Q Consensus 34 g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l-~~~p~-~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~ 111 (171)
+...+..+||... -.+++.+..+.+.+.+.++ --.+. .|+....+ .+|++-++-+.. +..
T Consensus 60 ~~~~~~~ela~~l----------~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~---~lT~~G~~~~~~-~~~---- 121 (160)
T 3boq_A 60 PDGLSMGKLSGAL----------KVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSA---KLTDAGLTTFKQ-ASE---- 121 (160)
T ss_dssp TTCEEHHHHHHHC----------SSCCSCHHHHHHHHHHHTSEEEC--------CEE---EECHHHHHHHHH-HHH----
T ss_pred CCCCCHHHHHHHH----------CCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEE---EEChhHHHHHHH-HHH----
Confidence 3456677777653 2478888888898888876 33332 34555555 467776554432 111
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHH
Q 030800 112 VKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKY 153 (171)
Q Consensus 112 ~K~~iR~iR~~~~~~lKk~~~~iseD~~~~~~~~iq~ltd~~ 153 (171)
.....+...-.++++++...+..-++++.+..
T Consensus 122 ----------~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~l 153 (160)
T 3boq_A 122 ----------AHNRILAELLRAVSDQDMVEASAALRGILESM 153 (160)
T ss_dssp ----------HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 11112222234589999988888888877544
Done!