BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030801
         (171 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
           Complexes From Oryza Sativa
 pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
           Complexes From Oryza Sativa
 pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
           Complexes From Oryza Sativa
 pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
           Complexes From Oryza Sativa
 pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14 Structures
 pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
          Length = 91

 Score = 28.1 bits (61), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 62  CLSYVTEGSNVTVPDKPCCP-----ELAGLVESNPICLCQLLGKNNTYGIK-IDITRALK 115
           CL+Y   G+    P   CC      + A    ++    C  L KN   GIK ++   A  
Sbjct: 13  CLTYARGGAG---PSAACCSGVRSLKAAASTTADRRTACNCL-KNAARGIKGLNAGNAAS 68

Query: 116 LPSVCGVTTP 125
           +PS CGV+ P
Sbjct: 69  IPSKCGVSVP 78


>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
           Resolution
 pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
           With A Galacturonate At 1.00 A Resolution.
 pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
           With Two Galacturonate At 1.15 A Resolution
          Length = 335

 Score = 26.6 bits (57), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 56  VLNMSDCLSYVTEGSNVTVPDKPCCP----ELAGLVESNPICLCQLLGKNNT---YGIKI 108
           V N  DC++ + +G+N+   +  C       +  +     +    + G   T   YG++I
Sbjct: 169 VKNQDDCIA-INDGNNIRFENNQCSGGHGISIGSIATGKHVSNVVIKGNTVTRSMYGVRI 227

Query: 109 DITRALKLPSVCGVTTPPVNLCSLA 133
              R     SV GVT     +  +A
Sbjct: 228 KAQRTATSASVSGVTYDANTISGIA 252


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.140    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,792,036
Number of Sequences: 62578
Number of extensions: 179352
Number of successful extensions: 251
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 11
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)