Query 030801
Match_columns 171
No_of_seqs 154 out of 1054
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:46:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04660 nsLTP_like nsLTP_like: 99.5 4E-15 8.6E-20 103.6 4.3 73 52-130 1-73 (73)
2 PF14368 LTP_2: Probable lipid 99.5 4.5E-15 9.7E-20 106.3 -0.7 78 49-130 19-96 (96)
3 cd01960 nsLTP1 nsLTP1: Non-spe 99.5 3.5E-14 7.6E-19 101.9 3.8 78 51-131 2-89 (89)
4 cd00010 AAI_LTSS AAI_LTSS: Alp 99.3 1.1E-12 2.3E-17 88.0 2.7 62 59-122 1-63 (63)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.3 2.2E-12 4.8E-17 88.7 3.6 61 57-125 4-64 (66)
6 smart00499 AAI Plant lipid tra 99.0 8.2E-10 1.8E-14 74.9 4.5 75 52-130 1-79 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.4 4E-09 8.6E-14 74.9 -5.3 67 57-130 13-90 (90)
8 cd01958 HPS_like HPS_like: Hyd 98.2 9.5E-07 2.1E-11 63.7 3.4 80 50-130 2-85 (85)
9 PF14547 Hydrophob_seed: Hydro 98.1 8.8E-07 1.9E-11 63.9 0.6 80 51-131 1-85 (85)
10 PRK08457 motB flagellar motor 38.9 41 0.00089 28.4 3.7 18 10-27 22-39 (257)
11 cd00261 AAI_SS AAI_SS: Alpha-A 29.3 17 0.00037 26.3 -0.1 65 57-124 13-104 (110)
12 COG4068 Uncharacterized protei 26.0 57 0.0012 22.2 1.9 23 4-26 37-59 (64)
13 TIGR02537 arch_flag_Nterm arch 23.9 1.4E+02 0.0029 16.8 3.0 23 5-27 1-23 (26)
14 PF05617 Prolamin_like: Prolam 23.3 62 0.0014 21.4 1.8 40 54-96 4-46 (70)
No 1
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.55 E-value=4e-15 Score=103.59 Aligned_cols=73 Identities=30% Similarity=0.664 Sum_probs=60.4
Q ss_pred chhhhcccccCHHHhhCCCCCCCCCcchHHHHHhcccCCCceeceeccCCCccccccCHHHHhhhhcccCCCCCCCCCC
Q 030801 52 CLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLC 130 (171)
Q Consensus 52 C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv~~Pp~s~C 130 (171)
|..++..|.+|++|+++++....|+..||++|+++ +..|+|.+++. ..+. .||.++|+.||++||+++++ ++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---~~~C~C~~~~~-~~~~-~i~~~~a~~Lp~~Cgv~~p~-~~C 73 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLCRYKTS-LVLQ-IIDPDKAVYLPAKCGLPLPP-SSC 73 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---CcCCEeeccCC-Cccc-ccCHHHHHHHHHHcCCCCCC-CCC
Confidence 66677889999999998643346899999999985 56699999875 3333 38999999999999999998 877
No 2
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.47 E-value=4.5e-15 Score=106.34 Aligned_cols=78 Identities=44% Similarity=0.933 Sum_probs=49.4
Q ss_pred CCCchhhhcccccCHHHhhCCCCCCCCCcchHHHHHhcccCCCceeceeccCCCccccccCHHHHhhhhcccCCCCCCCC
Q 030801 49 EDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVN 128 (171)
Q Consensus 49 ~~~C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv~~Pp~s 128 (171)
..+|.+++....+|+.|+.++ ..|+..||++++++.+.+..|||..+++....+++||.++++.||++||++.++ +
T Consensus 19 ~~~c~~~l~~c~~~~~~~~~~---~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~~~~-~ 94 (96)
T PF14368_consen 19 CCSCANSLLPCCPCLCYVTGG---PAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGVPVPP-S 94 (96)
T ss_dssp TTB-HCCCCHH--HHHHHCC--------HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS-S---
T ss_pred cchhHHHHhccccchhccCCC---CCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCCCCC-C
Confidence 467866654444458888743 689999999999998889999999998643245678999999999999999987 7
Q ss_pred CC
Q 030801 129 LC 130 (171)
Q Consensus 129 ~C 130 (171)
+|
T Consensus 95 ~C 96 (96)
T PF14368_consen 95 KC 96 (96)
T ss_dssp --
T ss_pred CC
Confidence 76
No 3
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.47 E-value=3.5e-14 Score=101.86 Aligned_cols=78 Identities=32% Similarity=0.658 Sum_probs=59.6
Q ss_pred CchhhhcccccCHHHhhCCCCCCCCCcchHHHHHhcccC-----CCceeceeccCCCccccc-cCHHHHhhhhcccCCCC
Q 030801 51 DCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVES-----NPICLCQLLGKNNTYGIK-IDITRALKLPSVCGVTT 124 (171)
Q Consensus 51 ~C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~-----~~~CLC~~~~~~~~~gi~-in~trA~~LP~~Cgv~~ 124 (171)
+|..++..|.+|++|+++++ ..|++.||++++++++. +..|+|..+++. ..++. ||.+++++||++||+++
T Consensus 2 ~C~~v~~~l~~C~~y~~g~~--~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~-~~~~~~i~~~~a~~LP~~C~v~~ 78 (89)
T cd01960 2 SCGQVTSLLAPCLGYLTGGG--PAPSPACCSGVKSLNGLAKTTADRQAACNCLKSA-AAGISGLNPGRAAGLPGKCGVSI 78 (89)
T ss_pred CHHHHHhhHHhHHHHHhCCC--CCCChHHhhhhHHHhhccCCCCchhhhhhccccc-ccccCCCCHHHHHhChHhcccCC
Confidence 69999999999999999864 67999999999999754 234555444432 22333 89999999999999997
Q ss_pred C----CCCCCC
Q 030801 125 P----PVNLCS 131 (171)
Q Consensus 125 P----p~s~C~ 131 (171)
+ +.+||+
T Consensus 79 ~~~i~~~~dC~ 89 (89)
T cd01960 79 PYPISPSTDCS 89 (89)
T ss_pred CCCCCCCCCCC
Confidence 6 345664
No 4
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.30 E-value=1.1e-12 Score=87.97 Aligned_cols=62 Identities=42% Similarity=0.893 Sum_probs=51.1
Q ss_pred cccCHHHhhCCCCCCCCCcchHHHHHhcccCCCceeceeccCCCcccccc-CHHHHhhhhcccCC
Q 030801 59 MSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKI-DITRALKLPSVCGV 122 (171)
Q Consensus 59 L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~~~~CLC~~~~~~~~~gi~i-n~trA~~LP~~Cgv 122 (171)
|.+|++|+++++ ..|+..||++++++.+.+..|||+.+++.......+ |.++++.||++||+
T Consensus 1 L~~C~~y~~~~~--~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGA--TAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCC--CCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 589999999763 679999999999998888999999998642211123 79999999999996
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.29 E-value=2.2e-12 Score=88.73 Aligned_cols=61 Identities=30% Similarity=0.643 Sum_probs=52.9
Q ss_pred cccccCHHHhhCCCCCCCCCcchHHHHHhcccCCCceeceeccCCCccccccCHHHHhhhhcccCCCCC
Q 030801 57 LNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTP 125 (171)
Q Consensus 57 ~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv~~P 125 (171)
.+|.+|++|++++ ..|+.+||+.|++ +..|||.++++ +.++..||.++|+.|+++||+++|
T Consensus 4 ~~L~~C~~ai~~~---~~Ps~~CC~~Lk~----~~~CLC~y~~~-p~l~~~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILGG---SPPSAACCAKLKE----QQSCLCQYAKN-PSLKQYVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhCC---CCCCHHHHHHHhc----CCCCeeeeecC-ccHHhhcCcHHHHHHHHHcCCCCC
Confidence 5799999999975 5799999999999 45899999975 455556899999999999999986
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=98.96 E-value=8.2e-10 Score=74.89 Aligned_cols=75 Identities=39% Similarity=0.782 Sum_probs=58.7
Q ss_pred chhhhcccccCHHHhhCCCCCCCCCcchHHHHHhcccCCCceeceeccCCCccccc----cCHHHHhhhhcccCCCCCCC
Q 030801 52 CLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIK----IDITRALKLPSVCGVTTPPV 127 (171)
Q Consensus 52 C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~~~~CLC~~~~~~~~~gi~----in~trA~~LP~~Cgv~~Pp~ 127 (171)
|...+..+.+|++|+++......|+..||++|+.+. +..|+|.+++.. ..++. ++..++..||+.||+..+.
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~-~~~~~~~~~~~~~~a~~lp~~C~~~~~~- 76 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAA-VLGILEIPGVNAQNAASLPSACGVPPPY- 76 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcc-cccccchhhhhHHHHHhhHHhcCCCCCC-
Confidence 667777888999999875223578899999999986 788999998753 22222 5899999999999999864
Q ss_pred CCC
Q 030801 128 NLC 130 (171)
Q Consensus 128 s~C 130 (171)
+.|
T Consensus 77 ~~C 79 (79)
T smart00499 77 TDC 79 (79)
T ss_pred CCC
Confidence 444
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.43 E-value=4e-09 Score=74.95 Aligned_cols=67 Identities=34% Similarity=0.793 Sum_probs=53.2
Q ss_pred cccccCHHHhhCCCCCCCCCcchHHHHHhcccCCCceeceeccCCCccc-----------cccCHHHHhhhhcccCCCCC
Q 030801 57 LNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYG-----------IKIDITRALKLPSVCGVTTP 125 (171)
Q Consensus 57 ~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~~~~CLC~~~~~~~~~g-----------i~in~trA~~LP~~Cgv~~P 125 (171)
..|.+|..|++++. ..|+..||++|+++ +..|+|..+... ..+ ..++..+|..||+.||+.++
T Consensus 13 ~~l~~c~~~~~~~~--~~~~~~CC~~L~~l---~~~C~C~~i~~~-~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~ 86 (90)
T PF00234_consen 13 VRLSPCLPYLQGGC--QQPSQQCCQQLRQL---DPQCRCEAIRQM-VRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPP 86 (90)
T ss_dssp SHHHGGHHHHTTSS--SHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred ccccccHHHHhccc--ccchHHHhHHHHHH---hHHhhCHHHHHH-HHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCC
Confidence 34899999999753 46889999999998 889999998743 122 25789999999999999986
Q ss_pred CCCCC
Q 030801 126 PVNLC 130 (171)
Q Consensus 126 p~s~C 130 (171)
. ++|
T Consensus 87 ~-~~C 90 (90)
T PF00234_consen 87 Y-TDC 90 (90)
T ss_dssp S-S-G
T ss_pred C-CCC
Confidence 4 455
No 8
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=98.24 E-value=9.5e-07 Score=63.67 Aligned_cols=80 Identities=33% Similarity=0.676 Sum_probs=63.7
Q ss_pred CCchhhhcccccCHHHhhCCC--CCCCCCcchHHHHHhcccCC-CceeceeccCCCccccccCHHHHhh-hhcccCCCCC
Q 030801 50 DDCLTKVLNMSDCLSYVTEGS--NVTVPDKPCCPELAGLVESN-PICLCQLLGKNNTYGIKIDITRALK-LPSVCGVTTP 125 (171)
Q Consensus 50 ~~C~~~l~~L~pCl~yl~g~~--~~~~Ps~~CC~alk~l~~~~-~~CLC~~~~~~~~~gi~in~trA~~-LP~~Cgv~~P 125 (171)
..|..+..+|..|.+.+.... ....|..+||+.++++.+.+ ..|||..++. +.+|+.+|....++ |-..||...|
T Consensus 2 ~~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaika-n~lgi~~~~pv~l~llln~CGk~~P 80 (85)
T cd01958 2 PTCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKA-NILGISINIPVALSLLLNSCGRNVP 80 (85)
T ss_pred CCCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeec-cccCcccccChhHHHHHHHHcCcCC
Confidence 358888788999999884211 12457789999999998874 6899999985 67888888888888 7778999999
Q ss_pred CCCCC
Q 030801 126 PVNLC 130 (171)
Q Consensus 126 p~s~C 130 (171)
++++|
T Consensus 81 ~gf~C 85 (85)
T cd01958 81 PGFTC 85 (85)
T ss_pred CCCcC
Confidence 88887
No 9
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=98.09 E-value=8.8e-07 Score=63.86 Aligned_cols=80 Identities=31% Similarity=0.681 Sum_probs=61.3
Q ss_pred CchhhhcccccCHHHhh--CCCCCCCCCcchHHHHHhcccCC-CceeceeccCCCccc-cccCHHHHhh-hhcccCCCCC
Q 030801 51 DCLTKVLNMSDCLSYVT--EGSNVTVPDKPCCPELAGLVESN-PICLCQLLGKNNTYG-IKIDITRALK-LPSVCGVTTP 125 (171)
Q Consensus 51 ~C~~~l~~L~pCl~yl~--g~~~~~~Ps~~CC~alk~l~~~~-~~CLC~~~~~~~~~g-i~in~trA~~-LP~~Cgv~~P 125 (171)
+|..+..+|..|.+.+. +......+...||+.++++.+.+ ..|||..++. +.+| +++|....+. |-..||...|
T Consensus 1 ~CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika-~vlg~i~~~ipv~l~~lln~CGk~~p 79 (85)
T PF14547_consen 1 TCPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKA-NVLGLINVNIPVALNLLLNACGKTVP 79 (85)
T ss_pred CCCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhh-hcccccccccccHHHHHHHHhCCcCc
Confidence 36767778999999882 11112346789999999998874 6799999885 5677 6666776776 8888999999
Q ss_pred CCCCCC
Q 030801 126 PVNLCS 131 (171)
Q Consensus 126 p~s~C~ 131 (171)
++++|.
T Consensus 80 ~gf~C~ 85 (85)
T PF14547_consen 80 SGFTCP 85 (85)
T ss_pred CCCcCC
Confidence 999984
No 10
>PRK08457 motB flagellar motor protein MotB; Reviewed
Probab=38.91 E-value=41 Score=28.45 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 030801 10 ATAAAAAAFFLIMVSCIG 27 (171)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~ 27 (171)
=++.++|+|.|+|+++..
T Consensus 22 Dl~TLLL~FFVlL~smS~ 39 (257)
T PRK08457 22 DFLSLLLALFIALYAISA 39 (257)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 467889999999998865
No 11
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=29.32 E-value=17 Score=26.26 Aligned_cols=65 Identities=26% Similarity=0.563 Sum_probs=41.2
Q ss_pred cccccCHHHhhCCC-CCC-----------CCCcchHHHHHhcccCCCceeceeccCC------Cc-------cc--cccC
Q 030801 57 LNMSDCLSYVTEGS-NVT-----------VPDKPCCPELAGLVESNPICLCQLLGKN------NT-------YG--IKID 109 (171)
Q Consensus 57 ~~L~pCl~yl~g~~-~~~-----------~Ps~~CC~alk~l~~~~~~CLC~~~~~~------~~-------~g--i~in 109 (171)
..|.+|..|+.... ... ..-..||.-++.+ ...|.|..+... .. -+ ...-
T Consensus 13 ~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i---~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (110)
T cd00261 13 QPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI---PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERM 89 (110)
T ss_pred ccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhC---cHhhhHHHHHHHHHHHHHhhhccccccCcChHHHH
Confidence 35788999886310 000 1125799999997 678999987532 00 00 1123
Q ss_pred HHHHhhhhcccCCCC
Q 030801 110 ITRALKLPSVCGVTT 124 (171)
Q Consensus 110 ~trA~~LP~~Cgv~~ 124 (171)
...|..||..||+..
T Consensus 90 ~~~a~~Lp~~C~~~~ 104 (110)
T cd00261 90 RQAAQNLPSMCNLYP 104 (110)
T ss_pred HHHHHhhchhcCCCC
Confidence 346778999999986
No 12
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=26.03 E-value=57 Score=22.15 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=17.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHH
Q 030801 4 GNRSAAATAAAAAAFFLIMVSCI 26 (171)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (171)
|+|-..+++-|+++++|+++-++
T Consensus 37 r~R~r~~~~~~~li~aLi~v~vv 59 (64)
T COG4068 37 RKRQRNFMILMFLILALILVMVV 59 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788889999999877665
No 13
>TIGR02537 arch_flag_Nterm archaeal flagellin N-terminal-like domain. This model describes a hydrophobic N-terminal sequence of archaeal flagellins and other archaeal proteins. The sequence is directly analogous to bacterial sequences recognized by TIGR02532, which has cleavage motif resembling G^FxxxE followed by strongly hydrophobic sequence. Such sequences are the recognized for cleavage and methylation, and include pilins and other pilus components and competence and type II secretion secretion proteins. In the present family, the E is not conversed and sequence differs enough that there is no overlap between this family and TIGR02532.
Probab=23.95 E-value=1.4e+02 Score=16.75 Aligned_cols=23 Identities=4% Similarity=0.086 Sum_probs=16.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHh
Q 030801 5 NRSAAATAAAAAAFFLIMVSCIG 27 (171)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ 27 (171)
+|..|-+...++.+++.+.+.+.
T Consensus 1 ~rgis~I~~~iiliai~ivla~~ 23 (26)
T TIGR02537 1 RKGISPIIGTIILIAITIVLAAA 23 (26)
T ss_pred CCcchhHHHHHHHHHHHHHHHHh
Confidence 46677788888888876665554
No 14
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=23.26 E-value=62 Score=21.35 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=23.6
Q ss_pred hhhcccccCHHHhhC---CCCCCCCCcchHHHHHhcccCCCceece
Q 030801 54 TKVLNMSDCLSYVTE---GSNVTVPDKPCCPELAGLVESNPICLCQ 96 (171)
Q Consensus 54 ~~l~~L~pCl~yl~g---~~~~~~Ps~~CC~alk~l~~~~~~CLC~ 96 (171)
.+......|..-+.. .+.....+.+||.++..+ ...|.=.
T Consensus 4 ~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~---g~~C~~~ 46 (70)
T PF05617_consen 4 SSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKM---GKDCHPA 46 (70)
T ss_pred HHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHH---hHhHHHH
Confidence 333344556654431 112357888999999997 5556544
Done!