Query 030802
Match_columns 171
No_of_seqs 150 out of 441
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 07:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wff_A Riken cDNA 2810002D23 p 100.0 1.2E-30 4.2E-35 190.0 -0.7 62 105-166 21-83 (85)
2 1wfh_A Zinc finger (AN1-like) 99.9 1.8E-27 6.2E-32 165.2 0.9 54 104-157 10-63 (64)
3 1wg2_A Zinc finger (AN1-like) 99.9 5.7E-27 1.9E-31 162.7 1.6 53 104-156 10-62 (64)
4 1wfl_A Zinc finger protein 216 99.9 8E-26 2.7E-30 160.8 4.7 52 104-155 20-71 (74)
5 1wfp_A Zinc finger (AN1-like) 99.9 6.1E-26 2.1E-30 161.4 1.6 54 103-156 19-72 (74)
6 1x4w_A Hypothetical protein FL 99.9 3.4E-26 1.2E-30 160.1 -0.4 55 102-156 8-65 (67)
7 2kzy_A ZNF216-A20, zfand5 prot 99.8 1.8E-19 6.1E-24 124.2 5.3 38 11-48 9-46 (62)
8 2c7n_A Rabex-5, GEF 1, RAB gua 99.7 1.4E-18 4.8E-23 123.1 3.4 42 5-46 6-47 (74)
9 3oj3_I Tumor necrosis factor a 99.6 6E-16 2.1E-20 101.7 3.2 28 16-43 19-47 (49)
10 1wfe_A Riken cDNA 2310008M20 p 99.4 1.2E-13 4E-18 100.5 1.2 59 105-171 21-82 (86)
11 1x4v_A Hypothetical protein LO 99.3 4.5E-13 1.5E-17 92.5 2.0 40 105-145 8-50 (63)
12 1wys_A Riken cDNA 2310008M20 p 99.2 2E-12 6.8E-17 92.0 2.4 41 108-149 13-56 (75)
13 2eqe_A Tumor necrosis factor, 97.9 7.8E-06 2.7E-10 53.1 2.9 29 14-42 14-43 (48)
14 1vfy_A Phosphatidylinositol-3- 93.4 0.031 1.1E-06 38.2 1.7 27 110-136 12-41 (73)
15 2yw8_A RUN and FYVE domain-con 93.0 0.052 1.8E-06 37.8 2.4 28 109-136 19-49 (82)
16 1x4u_A Zinc finger, FYVE domai 92.6 0.079 2.7E-06 37.0 2.9 28 109-136 14-44 (84)
17 1wfk_A Zinc finger, FYVE domai 92.5 0.085 2.9E-06 37.5 3.0 28 109-136 9-39 (88)
18 1z2q_A LM5-1; membrane protein 92.3 0.073 2.5E-06 37.2 2.5 29 108-136 20-51 (84)
19 1joc_A EEA1, early endosomal a 92.2 0.059 2E-06 40.6 2.0 28 109-136 69-99 (125)
20 3t7l_A Zinc finger FYVE domain 91.1 0.093 3.2E-06 37.2 2.0 28 109-136 20-50 (90)
21 1dvp_A HRS, hepatocyte growth 91.1 0.091 3.1E-06 42.3 2.1 28 109-136 161-191 (220)
22 3zyq_A Hepatocyte growth facto 90.5 0.15 5E-06 41.6 2.8 28 109-136 164-194 (226)
23 1y02_A CARP2, FYVE-ring finger 88.8 0.16 5.5E-06 38.3 1.7 41 109-149 19-65 (120)
24 2eqf_A Tumor necrosis factor, 84.4 0.51 1.7E-05 30.0 2.0 25 17-41 12-36 (46)
25 2vrw_B P95VAV, VAV1, proto-onc 84.2 0.44 1.5E-05 40.8 2.2 42 107-149 355-400 (406)
26 4b6d_A RAC GTPase-activating p 81.4 0.5 1.7E-05 31.4 1.1 24 108-131 18-44 (61)
27 3mpx_A FYVE, rhogef and PH dom 80.5 0.33 1.1E-05 41.7 0.0 28 109-136 375-405 (434)
28 3c5k_A HD6, histone deacetylas 77.9 1 3.5E-05 33.1 2.0 30 109-142 24-54 (109)
29 2eqg_A Tumor necrosis factor, 71.2 1.9 6.6E-05 27.7 1.7 26 17-42 13-39 (49)
30 1ptq_A Protein kinase C delta 66.9 3.3 0.00011 25.3 2.1 24 108-131 10-37 (50)
31 2enz_A NPKC-theta, protein kin 65.8 7.4 0.00025 25.3 3.8 26 107-132 21-50 (65)
32 2gmg_A Hypothetical protein PF 62.4 3.4 0.00012 30.6 1.8 26 118-145 62-88 (105)
33 2yuu_A NPKC-delta, protein kin 61.7 4.3 0.00015 27.8 2.2 26 107-132 26-55 (83)
34 1kbe_A Kinase suppressor of RA 61.3 3.1 0.0001 26.5 1.2 22 110-132 15-37 (49)
35 1r79_A Diacylglycerol kinase, 60.3 5 0.00017 28.3 2.3 23 109-131 38-65 (84)
36 3ky9_A Proto-oncogene VAV; cal 59.2 4.4 0.00015 36.6 2.3 40 107-147 527-570 (587)
37 3h0g_L DNA-directed RNA polyme 59.0 4.5 0.00015 27.3 1.8 24 107-130 19-46 (63)
38 2fnf_X Putative RAS effector N 58.4 5.1 0.00017 27.1 2.0 25 107-131 33-58 (72)
39 3uej_A NPKC-delta, protein kin 57.4 5.9 0.0002 25.7 2.1 24 108-131 19-46 (65)
40 1wd2_A Ariadne-1 protein homol 56.0 4.9 0.00017 26.4 1.6 30 108-137 5-41 (60)
41 1ef4_A Subunit N, DNA-directed 55.8 3.5 0.00012 27.3 0.8 14 108-121 2-15 (55)
42 1faq_A RAF-1; transferase, ser 54.8 4.3 0.00015 25.0 1.1 24 108-132 13-37 (52)
43 1rfh_A RAS association (ralgds 54.7 4.5 0.00015 26.1 1.2 25 107-131 20-45 (59)
44 1twf_J DNA-directed RNA polyme 53.3 4.5 0.00015 28.0 1.0 14 108-121 3-16 (70)
45 1z60_A TFIIH basal transcripti 53.2 4.3 0.00015 27.0 0.9 35 111-145 17-56 (59)
46 2co8_A NEDD9 interacting prote 50.7 11 0.00038 25.1 2.7 29 110-138 43-73 (82)
47 1y8f_A UNC-13 homolog A, MUNC1 50.1 9 0.00031 25.0 2.1 24 108-131 23-50 (66)
48 2eli_A Protein kinase C alpha 48.5 14 0.00047 25.4 3.0 43 107-149 26-72 (85)
49 2enn_A NPKC-theta, protein kin 46.6 7.3 0.00025 26.3 1.3 26 107-132 32-61 (77)
50 4ayb_N DNA-directed RNA polyme 46.1 5.9 0.0002 27.1 0.7 14 108-121 3-16 (66)
51 2ysl_A Tripartite motif-contai 42.9 29 0.001 21.8 3.8 25 109-134 20-44 (73)
52 2ysj_A Tripartite motif-contai 42.7 30 0.001 21.3 3.7 25 109-134 20-44 (63)
53 3f6q_B LIM and senescent cell 41.7 7.1 0.00024 24.6 0.6 27 110-136 40-66 (72)
54 1x68_A FHL5 protein; four-and- 40.9 14 0.00049 23.9 2.0 29 110-138 36-64 (76)
55 2lce_A B-cell lymphoma 6 prote 40.8 16 0.00055 22.6 2.2 27 108-134 16-57 (74)
56 4gne_A Histone-lysine N-methyl 39.6 13 0.00044 27.2 1.7 26 111-139 60-86 (107)
57 2d8t_A Dactylidin, ring finger 39.6 25 0.00086 22.3 3.0 43 108-151 14-59 (71)
58 4gzn_C ZFP-57, zinc finger pro 39.2 9.3 0.00032 24.3 0.8 27 108-134 3-44 (60)
59 3j21_g 50S ribosomal protein L 37.6 9.9 0.00034 24.6 0.8 24 108-131 13-37 (51)
60 2kwq_A Protein MCM10 homolog; 37.5 12 0.00043 26.9 1.3 20 123-142 48-67 (92)
61 2d8x_A Protein pinch; LIM doma 36.4 10 0.00034 24.2 0.6 27 110-136 32-58 (70)
62 2cot_A Zinc finger protein 435 33.7 51 0.0017 20.3 3.8 27 107-133 16-57 (77)
63 2row_A RHO-associated protein 33.3 12 0.00042 26.3 0.7 42 107-148 33-83 (84)
64 1vd4_A Transcription initiatio 32.7 15 0.00052 22.5 1.0 26 108-133 13-50 (62)
65 1x64_A Alpha-actinin-2 associa 32.7 12 0.00042 25.1 0.6 10 110-119 26-35 (89)
66 1bbo_A Human enhancer-binding 32.6 20 0.00068 20.7 1.5 11 123-133 29-40 (57)
67 2zet_C Melanophilin; complex, 32.3 18 0.00063 27.8 1.7 30 108-137 67-100 (153)
68 1nyp_A Pinch protein; LIM doma 31.6 13 0.00045 23.3 0.6 27 110-136 32-58 (66)
69 2adr_A ADR1; transcription reg 31.6 22 0.00074 20.9 1.6 11 123-133 30-41 (60)
70 2elq_A Zinc finger protein 406 31.6 19 0.00064 18.8 1.2 11 123-133 9-20 (36)
71 1x61_A Thyroid receptor intera 31.5 14 0.00047 23.5 0.7 26 110-135 34-59 (72)
72 3uk3_C Zinc finger protein 217 31.4 20 0.0007 20.7 1.4 11 109-119 4-14 (57)
73 1x4l_A Skeletal muscle LIM-pro 30.9 14 0.00049 23.5 0.7 27 110-136 36-62 (72)
74 2db6_A SH3 and cysteine rich d 30.8 16 0.00054 24.4 0.9 26 107-132 26-55 (74)
75 2ecv_A Tripartite motif-contai 30.7 68 0.0023 20.3 4.1 26 109-135 19-44 (85)
76 2ehe_A Four and A half LIM dom 30.1 27 0.00093 22.7 2.0 29 110-138 44-72 (82)
77 1g47_A Pinch protein; LIM doma 30.0 14 0.00047 23.8 0.5 25 111-135 41-65 (77)
78 2csz_A Synaptotagmin-like prot 29.6 23 0.0008 24.7 1.6 31 108-138 24-58 (76)
79 1zbd_B Rabphilin-3A; G protein 29.4 26 0.0009 26.3 2.1 29 109-137 55-87 (134)
80 1x4k_A Skeletal muscle LIM-pro 29.1 16 0.00055 23.2 0.7 27 110-136 34-60 (72)
81 2ct2_A Tripartite motif protei 29.0 57 0.002 21.0 3.5 26 109-134 15-43 (88)
82 1znf_A 31ST zinc finger from X 28.8 16 0.00053 17.6 0.5 10 124-133 2-12 (27)
83 2uzg_A Ubiquitin carboxyl-term 28.5 32 0.0011 24.3 2.3 31 109-142 25-58 (97)
84 2m0d_A Zinc finger and BTB dom 28.3 17 0.00058 17.6 0.6 10 124-133 4-14 (30)
85 1yop_A KTI11P; zinc finger, me 28.2 15 0.00051 25.9 0.5 14 122-135 22-35 (83)
86 2kvh_A Zinc finger and BTB dom 28.0 17 0.00059 17.6 0.6 10 124-133 4-14 (27)
87 2kvf_A Zinc finger and BTB dom 28.0 18 0.00061 17.6 0.6 11 124-134 4-15 (28)
88 2ecj_A Tripartite motif-contai 28.0 61 0.0021 19.1 3.3 25 109-134 15-39 (58)
89 1ffk_W Ribosomal protein L37AE 27.7 16 0.00055 25.2 0.5 31 105-135 23-58 (73)
90 2ee8_A Protein ODD-skipped-rel 27.7 58 0.002 21.2 3.4 28 107-134 15-57 (106)
91 1x6e_A Zinc finger protein 24; 27.5 24 0.00081 21.8 1.3 12 108-119 13-24 (72)
92 2lv2_A Insulinoma-associated p 27.5 41 0.0014 22.7 2.6 27 108-134 27-68 (85)
93 1ard_A Yeast transcription fac 27.4 16 0.00055 17.7 0.4 10 124-133 3-13 (29)
94 2ayj_A 50S ribosomal protein L 27.2 17 0.00057 24.1 0.5 23 108-130 18-41 (56)
95 2lvu_A Zinc finger and BTB dom 33.2 13 0.00045 17.9 0.0 12 124-135 3-15 (26)
96 2cu8_A Cysteine-rich protein 2 26.8 27 0.00093 22.5 1.5 25 110-134 37-61 (76)
97 1wyh_A SLIM 2, skeletal muscle 26.7 18 0.00063 22.9 0.6 27 110-136 34-60 (72)
98 1x62_A C-terminal LIM domain p 26.5 11 0.00037 24.8 -0.5 24 111-134 43-66 (79)
99 2m0f_A Zinc finger and BTB dom 26.5 18 0.00061 17.4 0.5 10 124-133 3-13 (29)
100 2kvg_A Zinc finger and BTB dom 26.5 18 0.00061 17.8 0.5 10 124-133 4-14 (27)
101 1a7i_A QCRP2 (LIM1); LIM domai 26.5 18 0.00062 23.6 0.6 25 111-135 36-60 (81)
102 2jr7_A DPH3 homolog; DESR1, CS 26.4 17 0.00058 26.0 0.5 12 121-132 21-32 (89)
103 3cc2_Z 50S ribosomal protein L 26.4 16 0.00055 27.4 0.3 32 105-136 56-92 (116)
104 2gqj_A Zinc finger protein KIA 26.2 19 0.00065 23.9 0.7 13 108-120 23-35 (98)
105 2yur_A Retinoblastoma-binding 26.1 60 0.002 20.7 3.2 26 109-135 15-41 (74)
106 2ea6_A Ring finger protein 4; 26.1 40 0.0014 20.6 2.2 26 109-134 15-46 (69)
107 2dar_A PDZ and LIM domain prot 25.8 20 0.00068 24.0 0.7 11 109-119 25-35 (90)
108 2elx_A Zinc finger protein 406 25.5 25 0.00084 18.0 1.0 11 123-133 7-18 (35)
109 2ctd_A Zinc finger protein 512 25.3 25 0.00085 23.8 1.2 11 109-119 34-44 (96)
110 2d8z_A Four and A half LIM dom 25.3 20 0.00069 22.6 0.6 26 110-135 32-57 (70)
111 1x5w_A Zinc finger protein 64, 25.2 35 0.0012 20.8 1.8 12 108-119 8-19 (70)
112 1x63_A Skeletal muscle LIM-pro 25.2 20 0.0007 23.3 0.7 27 110-136 44-70 (82)
113 1klr_A Zinc finger Y-chromosom 24.8 18 0.00062 17.5 0.3 10 124-133 3-13 (30)
114 1jm7_B BARD1, BRCA1-associated 24.6 33 0.0011 24.1 1.7 26 109-135 22-48 (117)
115 2elo_A Zinc finger protein 406 24.6 26 0.00087 18.3 0.9 10 123-132 9-19 (37)
116 2csy_A Zinc finger protein 183 24.6 68 0.0023 20.7 3.2 25 109-134 15-39 (81)
117 1e4u_A Transcriptional repress 24.5 24 0.00083 23.7 1.0 25 110-134 12-39 (78)
118 1paa_A Yeast transcription fac 24.5 19 0.00065 17.7 0.3 11 124-134 3-14 (30)
119 2m0e_A Zinc finger and BTB dom 24.4 19 0.00065 17.3 0.3 11 124-134 3-14 (29)
120 1srk_A Zinc finger protein ZFP 24.3 27 0.00091 18.0 0.9 11 123-133 7-18 (35)
121 1p7a_A BF3, BKLF, kruppel-like 23.9 28 0.00094 18.2 1.0 8 110-117 12-19 (37)
122 1rik_A E6APC1 peptide; E6-bind 23.7 23 0.00079 17.1 0.6 11 124-134 3-14 (29)
123 2djb_A Polycomb group ring fin 23.5 60 0.0021 20.5 2.7 25 109-134 15-40 (72)
124 2d8y_A Eplin protein; LIM doma 23.2 20 0.00067 24.1 0.3 24 111-134 44-67 (91)
125 1wge_A Hypothetical protein 26 23.2 21 0.00071 25.1 0.4 13 121-133 28-40 (83)
126 2ecw_A Tripartite motif-contai 23.2 1.1E+02 0.0037 19.3 4.0 25 109-134 19-43 (85)
127 1wil_A KIAA1045 protein; ring 23.0 49 0.0017 23.7 2.3 25 108-132 14-39 (89)
128 2lvt_A Zinc finger and BTB dom 28.5 18 0.00061 17.8 0.0 11 124-134 3-14 (29)
129 1e0f_I Haemadin, factor IIA; c 22.8 44 0.0015 21.6 1.9 30 120-149 13-42 (57)
130 4ayb_P DNA-directed RNA polyme 22.2 32 0.0011 22.1 1.1 21 110-130 4-31 (48)
131 3l11_A E3 ubiquitin-protein li 21.9 33 0.0011 23.8 1.3 25 109-134 15-39 (115)
132 2elt_A Zinc finger protein 406 21.8 36 0.0012 17.5 1.2 9 124-132 10-19 (36)
133 2ecy_A TNF receptor-associated 21.7 63 0.0021 20.0 2.5 26 109-135 15-40 (66)
134 2elp_A Zinc finger protein 406 21.6 37 0.0013 17.7 1.2 11 123-133 9-20 (37)
135 1twf_L ABC10-alpha, DNA-direct 21.6 26 0.00089 23.8 0.7 23 108-130 27-53 (70)
136 2egq_A FHL1 protein; LIM domai 21.2 25 0.00084 22.6 0.4 27 110-136 47-73 (77)
137 2elv_A Zinc finger protein 406 20.9 34 0.0012 17.7 0.9 11 123-133 9-20 (36)
138 1iml_A CRIP, cysteine rich int 20.7 42 0.0015 21.5 1.6 25 110-134 28-52 (76)
139 2els_A Zinc finger protein 406 20.6 28 0.00095 18.1 0.5 12 123-134 9-21 (36)
140 1x3h_A Leupaxin; paxillin fami 20.3 29 0.00099 22.4 0.6 27 110-136 42-68 (80)
No 1
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=99.95 E-value=1.2e-30 Score=190.02 Aligned_cols=62 Identities=48% Similarity=1.039 Sum_probs=59.0
Q ss_pred CCCCCCcccccccccccc-ceeeecCccccCCCCCCCCCCCCccchHHHHHHHHHhCCccccc
Q 030802 105 AKEGPKRCTTCNKRVGLT-GFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAE 166 (171)
Q Consensus 105 ~~~~~~rC~~C~kkvgl~-gf~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~i~k~Np~v~~~ 166 (171)
+++.++||+.|+|||||+ +|.||||++||+.|||||+|+|+||||++||++|+|+||+|+++
T Consensus 21 ~k~~~~rC~~C~kkvgl~~~f~CrCg~~FC~~HRy~e~H~C~fDyK~~gr~~iak~NPvV~a~ 83 (85)
T 1wff_A 21 KKKIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEANPVSGPS 83 (85)
T ss_dssp CCCCCCBCSSSCCBCSSSSCEECTTCCEECTTTCSTGGGTCCSCCSSSCCCCCCCCCCCCCTT
T ss_pred CcccCccchhhCCeecccCCeEcCCCCEecccCCCccCCCCcchhhHHHHHHHHHHCCeecCC
Confidence 456689999999999996 99999999999999999999999999999999999999999986
No 2
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.93 E-value=1.8e-27 Score=165.16 Aligned_cols=54 Identities=52% Similarity=1.192 Sum_probs=50.6
Q ss_pred CCCCCCCccccccccccccceeeecCccccCCCCCCCCCCCCccchHHHHHHHH
Q 030802 104 KAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIA 157 (171)
Q Consensus 104 ~~~~~~~rC~~C~kkvgl~gf~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~i~ 157 (171)
+++..++||+.|+|||||++|+||||++||+.|||||+|+|+||||++||++|+
T Consensus 10 ~~k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fDyk~~gr~~l~ 63 (64)
T 1wfh_A 10 SPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGSGPSS 63 (64)
T ss_dssp CCCSSCCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCSCCCCSCCC
T ss_pred CCCCcCCcChhhCCccCccCEEeecCCEeccccCCcccCCCCchhhHHHHHHhc
Confidence 456678999999999999999999999999999999999999999999999875
No 3
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.92 E-value=5.7e-27 Score=162.69 Aligned_cols=53 Identities=42% Similarity=1.078 Sum_probs=49.6
Q ss_pred CCCCCCCccccccccccccceeeecCccccCCCCCCCCCCCCccchHHHHHHH
Q 030802 104 KAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAI 156 (171)
Q Consensus 104 ~~~~~~~rC~~C~kkvgl~gf~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~i 156 (171)
.++..++||+.|+|||||++|+||||++||+.|||||+|+|+||||++||++|
T Consensus 10 ~~~~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~~gr~~~ 62 (64)
T 1wg2_A 10 RPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGSGPS 62 (64)
T ss_dssp CCSCCSCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCSCSCCCSC
T ss_pred CCCCcCCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchhHHhHHHh
Confidence 44556899999999999999999999999999999999999999999999876
No 4
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=99.92 E-value=8e-26 Score=160.78 Aligned_cols=52 Identities=60% Similarity=1.299 Sum_probs=48.2
Q ss_pred CCCCCCCccccccccccccceeeecCccccCCCCCCCCCCCCccchHHHHHH
Q 030802 104 KAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREA 155 (171)
Q Consensus 104 ~~~~~~~rC~~C~kkvgl~gf~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~ 155 (171)
+.++.++||+.|+|||||++|.||||++||+.|||+|+|+|+||||++||++
T Consensus 20 ~~k~~~nRC~~CrKkvgL~gf~CrCg~~FCs~HRy~e~H~C~fDyk~~gr~~ 71 (74)
T 1wfl_A 20 LPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEASGP 71 (74)
T ss_dssp CCCSCTTBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCCGGGTSSCC
T ss_pred cCCCcCCcChhhCCcccccCeecCCCCEechhcCCCccCCCcchhhhhchhh
Confidence 3455689999999999999999999999999999999999999999999864
No 5
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.91 E-value=6.1e-26 Score=161.38 Aligned_cols=54 Identities=46% Similarity=1.081 Sum_probs=50.2
Q ss_pred CCCCCCCCccccccccccccceeeecCccccCCCCCCCCCCCCccchHHHHHHH
Q 030802 103 VKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAI 156 (171)
Q Consensus 103 ~~~~~~~~rC~~C~kkvgl~gf~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~i 156 (171)
.++++.++||+.|+|||||++|.||||++||+.|||||+|+|+||||++||++|
T Consensus 19 ~~~k~~~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk~~gr~~~ 72 (74)
T 1wfp_A 19 DPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVASGPS 72 (74)
T ss_dssp CCTTCCCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTSCCCCCC
T ss_pred ccCcccCccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchhHHhHHhh
Confidence 345667899999999999999999999999999999999999999999999876
No 6
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=3.4e-26 Score=160.10 Aligned_cols=55 Identities=29% Similarity=0.746 Sum_probs=49.7
Q ss_pred CCCCCCCCCccccccccccccc---eeeecCccccCCCCCCCCCCCCccchHHHHHHH
Q 030802 102 GVKAKEGPKRCTTCNKRVGLTG---FNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAI 156 (171)
Q Consensus 102 ~~~~~~~~~rC~~C~kkvgl~g---f~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~i 156 (171)
..++++.++||+.|+|||||++ |+||||++||+.|||||+|+|+||||++||+.|
T Consensus 8 ~~~~~~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~HRy~e~H~C~fDyk~~gr~~~ 65 (67)
T 1x4w_A 8 SRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGSGPS 65 (67)
T ss_dssp CCCSCSCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTTTCSTGGGTCSSCSSCSSCCCC
T ss_pred CccCCccCCcchhhCCeecccccCceEecCCCEehhccCCccccCCcccccccccccc
Confidence 3345667899999999999995 999999999999999999999999999999764
No 7
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=99.78 E-value=1.8e-19 Score=124.18 Aligned_cols=38 Identities=39% Similarity=0.919 Sum_probs=34.0
Q ss_pred CCCCccchhcCCCCCCccccCCchhHHHHHHHHHHHHH
Q 030802 11 APEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQA 48 (171)
Q Consensus 11 ~p~~p~lC~n~CGFfGs~at~n~CSkCyr~~~~~~~~~ 48 (171)
+|++|+||+|||||||||+|+||||||||+++.+++++
T Consensus 9 ~~~~~~lC~ngCGFfGnpaT~nlCSkCyr~~~~~~~~~ 46 (62)
T 2kzy_A 9 QTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS 46 (62)
T ss_dssp CCSCCCBCTTCCSSBCCTTTTSCCHHHHHHHHHHHHHH
T ss_pred CCCcccchhhCCCCcCChhhcCcCHHHHHHHHHhhhcc
Confidence 47789999999999999999999999999998766644
No 8
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=99.72 E-value=1.4e-18 Score=123.10 Aligned_cols=42 Identities=26% Similarity=0.722 Sum_probs=27.2
Q ss_pred cccCCCCCCCccchhcCCCCCCccccCCchhHHHHHHHHHHH
Q 030802 5 DETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQE 46 (171)
Q Consensus 5 ~~~~~q~p~~p~lC~n~CGFfGs~at~n~CSkCyr~~~~~~~ 46 (171)
+.++++.|++|+||+|||||||||+|+||||||||+...+..
T Consensus 6 ~~~~~q~pe~~~lC~ngCGFfGnpaT~nlCSkCyrd~~~k~~ 47 (74)
T 2c7n_A 6 ERRGIHVDQSDLLCKKGCGYYGNPAWQGFCSKCWREEYHKAR 47 (74)
T ss_dssp ------------CCTTCSSSCCCGGGTTCCHHHHHHHHHHHH
T ss_pred hhccCCCCCcchhHHhCCCCCCChhhcCccHHHHHHHHHHHH
Confidence 355688899999999999999999999999999999865443
No 9
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=99.58 E-value=6e-16 Score=101.67 Aligned_cols=28 Identities=21% Similarity=0.599 Sum_probs=26.6
Q ss_pred cchh-cCCCCCCccccCCchhHHHHHHHH
Q 030802 16 ILCV-NNCGFFGSAATMNMCSKCHKAMIL 43 (171)
Q Consensus 16 ~lC~-n~CGFfGs~at~n~CSkCyr~~~~ 43 (171)
+||+ |||||||||+|+|||||||||++.
T Consensus 19 ~lC~~ngCGFfG~p~t~n~CSkCyre~~e 47 (49)
T 3oj3_I 19 SKCRKAGCVYFGTPENKGFCTLCFIEYRE 47 (49)
T ss_dssp CBCSSTTCSSBCBGGGTTBCHHHHHHHHH
T ss_pred cccccCCCCCccCcccCCcchHHHHHHHH
Confidence 7999 999999999999999999999864
No 10
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=99.35 E-value=1.2e-13 Score=100.51 Aligned_cols=59 Identities=22% Similarity=0.440 Sum_probs=49.8
Q ss_pred CCCCCCcccc--ccccccccceeee-cCccccCCCCCCCCCCCCccchHHHHHHHHHhCCcccccccccC
Q 030802 105 AKEGPKRCTT--CNKRVGLTGFNCR-CGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAEKLDKI 171 (171)
Q Consensus 105 ~~~~~~rC~~--C~kkvgl~gf~Cr-Cg~~FC~~HRy~e~H~C~fDyk~~~r~~i~k~Np~v~~~Ki~KI 171 (171)
.+..++||.. |+++ +|++|.|+ |+.+||..|||++.|+|+.. .+.+.++...+.++.+|
T Consensus 21 ~~~~~~~C~~~~Ck~~-~~l~f~C~~C~~~FC~~HR~~e~H~C~~~-------~~~k~~~~~~~~l~~~~ 82 (86)
T 1wfe_A 21 DEHKSYSCSFKGCTDV-ELVAVICPYCEKNFCLRHRHQSDHDCEKL-------EVAKPRMAATQKLVRSG 82 (86)
T ss_dssp SCSCCEECCSTTCCCE-ESSCEECTTTCCEECGGGCSTGGGTCSSS-------SCCCSSCCCCCCCSSCS
T ss_pred cCCCCCCCCCcCCCCC-CccceECCCCCcccccccCCccCCCCCCC-------cccccchHHHHHHHHHH
Confidence 3456799998 9998 78999999 99999999999999999975 34677788777777765
No 11
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=4.5e-13 Score=92.48 Aligned_cols=40 Identities=30% Similarity=0.757 Sum_probs=36.8
Q ss_pred CCCCCCcccc--ccccccccceeee-cCccccCCCCCCCCCCCC
Q 030802 105 AKEGPKRCTT--CNKRVGLTGFNCR-CGNLFCAVHRYSDKHGCP 145 (171)
Q Consensus 105 ~~~~~~rC~~--C~kkvgl~gf~Cr-Cg~~FC~~HRy~e~H~C~ 145 (171)
.+...+||.. |+++ +|++|.|+ |+.+||..|||+|+|+|+
T Consensus 8 ~k~~~~~Cs~~~Ck~~-~ll~f~C~~C~~~FC~~HR~~e~H~C~ 50 (63)
T 1x4v_A 8 RKIFTNKCERAGCRQR-EMMKLTCERCSRNFCIKHRHPLDHDCS 50 (63)
T ss_dssp CCTTCCCCCSTTCCCC-CSSCCBCSSSCCBCCHHHHSTTSSCCC
T ss_pred CcccCCCCCccCCCCC-CccceECCCCCcccCcccCCccCCcCC
Confidence 4456799998 9998 89999999 999999999999999997
No 12
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.24 E-value=2e-12 Score=92.01 Aligned_cols=41 Identities=34% Similarity=0.806 Sum_probs=38.2
Q ss_pred CCCcccc--ccccccccceeee-cCccccCCCCCCCCCCCCccch
Q 030802 108 GPKRCTT--CNKRVGLTGFNCR-CGNLFCAVHRYSDKHGCPFDYR 149 (171)
Q Consensus 108 ~~~rC~~--C~kkvgl~gf~Cr-Cg~~FC~~HRy~e~H~C~fDyk 149 (171)
..+||.. |+++ +|++|+|+ |+.+||..|||++.|+|+++++
T Consensus 13 ~g~~Cs~~~C~~~-dflpf~C~~C~~~FC~~HR~~e~H~C~~~~~ 56 (75)
T 1wys_A 13 IGQHCQVQHCRQR-DFLPFVCDGCSGIFCLEHRSKDSHGCSEVNV 56 (75)
T ss_dssp CCCCCSCTTTCCC-SCCCEECTTTCCEECSTTCSSGGGTCCCCSS
T ss_pred cCCCcCcccCCCc-cceeeECcccCcCcCcccCCccccCCCCCcc
Confidence 4689998 9987 79999999 9999999999999999999986
No 13
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=97.87 E-value=7.8e-06 Score=53.09 Aligned_cols=29 Identities=24% Similarity=0.694 Sum_probs=26.3
Q ss_pred Cccchh-cCCCCCCccccCCchhHHHHHHH
Q 030802 14 GPILCV-NNCGFFGSAATMNMCSKCHKAMI 42 (171)
Q Consensus 14 ~p~lC~-n~CGFfGs~at~n~CSkCyr~~~ 42 (171)
+...|. .||-|||+|.+.++|..||-++.
T Consensus 14 gt~kCRk~GC~fFGTpen~GFCTlCf~eyr 43 (48)
T 2eqe_A 14 GTSKCRKAGCVYFGTPENKGFCTLCFIEYS 43 (48)
T ss_dssp CSSBCSSTTCCSBCCTTTTTCCHHHHHHHH
T ss_pred ccchhhhcCCCcccCcccCceeeeehhhhh
Confidence 446897 99999999999999999999985
No 14
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=93.40 E-value=0.031 Score=38.21 Aligned_cols=27 Identities=41% Similarity=1.117 Sum_probs=24.1
Q ss_pred Ccccccccccccc--ceeee-cCccccCCC
Q 030802 110 KRCTTCNKRVGLT--GFNCR-CGNLFCAVH 136 (171)
Q Consensus 110 ~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 136 (171)
..|..|+++.+++ --.|| ||.+||+.+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~C 41 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEH 41 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGG
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccc
Confidence 4799999999987 49999 999999875
No 15
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=92.98 E-value=0.052 Score=37.84 Aligned_cols=28 Identities=32% Similarity=1.050 Sum_probs=24.2
Q ss_pred CCcccccccccccc--ceeee-cCccccCCC
Q 030802 109 PKRCTTCNKRVGLT--GFNCR-CGNLFCAVH 136 (171)
Q Consensus 109 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 136 (171)
...|..|+++.+++ --.|| ||.+||+.+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~C 49 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTC 49 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGG
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHH
Confidence 35799999999987 48999 999999864
No 16
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.56 E-value=0.079 Score=36.98 Aligned_cols=28 Identities=32% Similarity=0.776 Sum_probs=24.4
Q ss_pred CCcccccccccccc--ceeee-cCccccCCC
Q 030802 109 PKRCTTCNKRVGLT--GFNCR-CGNLFCAVH 136 (171)
Q Consensus 109 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 136 (171)
...|..|.++.+|+ --.|| ||.+||+..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C 44 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRC 44 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTT
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhh
Confidence 45899999999987 48999 999999875
No 17
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=92.46 E-value=0.085 Score=37.46 Aligned_cols=28 Identities=32% Similarity=0.898 Sum_probs=24.5
Q ss_pred CCcccccccccccc--ceeee-cCccccCCC
Q 030802 109 PKRCTTCNKRVGLT--GFNCR-CGNLFCAVH 136 (171)
Q Consensus 109 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 136 (171)
...|..|+++.+++ --.|| ||.+||+.+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C 39 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGC 39 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTT
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhH
Confidence 45899999999987 48999 999999874
No 18
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=92.32 E-value=0.073 Score=37.22 Aligned_cols=29 Identities=28% Similarity=0.713 Sum_probs=24.8
Q ss_pred CCCcccccccccccc--ceeee-cCccccCCC
Q 030802 108 GPKRCTTCNKRVGLT--GFNCR-CGNLFCAVH 136 (171)
Q Consensus 108 ~~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 136 (171)
....|..|+++.+++ --.|| ||.+||+.+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~C 51 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDC 51 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGG
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHH
Confidence 346899999999987 48999 999999864
No 19
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=92.21 E-value=0.059 Score=40.56 Aligned_cols=28 Identities=43% Similarity=1.060 Sum_probs=24.1
Q ss_pred CCcccccccccccc--ceeee-cCccccCCC
Q 030802 109 PKRCTTCNKRVGLT--GFNCR-CGNLFCAVH 136 (171)
Q Consensus 109 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 136 (171)
...|..|+++.+++ -..|| ||.+||+.+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~C 99 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAEC 99 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGG
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHH
Confidence 45899999999987 48999 999999864
No 20
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=91.15 E-value=0.093 Score=37.24 Aligned_cols=28 Identities=36% Similarity=1.025 Sum_probs=24.2
Q ss_pred CCcccccccccccc--ceeee-cCccccCCC
Q 030802 109 PKRCTTCNKRVGLT--GFNCR-CGNLFCAVH 136 (171)
Q Consensus 109 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 136 (171)
...|..|.++.+++ -..|| ||.+||+..
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~C 50 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVC 50 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGG
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcc
Confidence 46799999999987 59999 999998763
No 21
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=91.07 E-value=0.091 Score=42.34 Aligned_cols=28 Identities=32% Similarity=0.917 Sum_probs=24.5
Q ss_pred CCcccccccccccc--ceeee-cCccccCCC
Q 030802 109 PKRCTTCNKRVGLT--GFNCR-CGNLFCAVH 136 (171)
Q Consensus 109 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 136 (171)
...|..|+++.+++ --+|| ||.+||+.+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~C 191 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQC 191 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTT
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHH
Confidence 36899999999987 49999 999999864
No 22
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=90.53 E-value=0.15 Score=41.61 Aligned_cols=28 Identities=32% Similarity=1.025 Sum_probs=24.5
Q ss_pred CCcccccccccccc--ceeee-cCccccCCC
Q 030802 109 PKRCTTCNKRVGLT--GFNCR-CGNLFCAVH 136 (171)
Q Consensus 109 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 136 (171)
...|..|+++.+++ -..|| ||.+||+.+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~C 194 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKC 194 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTT
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhh
Confidence 35899999999987 59999 999999864
No 23
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=88.81 E-value=0.16 Score=38.31 Aligned_cols=41 Identities=22% Similarity=0.480 Sum_probs=28.4
Q ss_pred CCcccccccccccc--ceeee-cCccccCC---CCCCCCCCCCccch
Q 030802 109 PKRCTTCNKRVGLT--GFNCR-CGNLFCAV---HRYSDKHGCPFDYR 149 (171)
Q Consensus 109 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~---HRy~e~H~C~fDyk 149 (171)
...|..|+++.+++ --.|| ||.+||+. |+.+..--|..=|.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 36899999999886 58999 99999875 46555555665444
No 24
>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=84.39 E-value=0.51 Score=30.04 Aligned_cols=25 Identities=24% Similarity=0.580 Sum_probs=22.0
Q ss_pred chhcCCCCCCccccCCchhHHHHHH
Q 030802 17 LCVNNCGFFGSAATMNMCSKCHKAM 41 (171)
Q Consensus 17 lC~n~CGFfGs~at~n~CSkCyr~~ 41 (171)
-++.+|..|||..-+++|..||.-.
T Consensus 12 C~apgCdhygN~kc~GyCNeC~~fK 36 (46)
T 2eqf_A 12 CRAPACDHFGNAKCNGYCNECFQFK 36 (46)
T ss_dssp CSSTTCCSCCBGGGTBSCHHHHHHH
T ss_pred ccCcccccccchhhhhhhHHHHhhH
Confidence 4588999999999999999999643
No 25
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=84.23 E-value=0.44 Score=40.84 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=27.8
Q ss_pred CCCCccccccccc-ccc--ceeee-cCccccCCCCCCCCCCCCccch
Q 030802 107 EGPKRCTTCNKRV-GLT--GFNCR-CGNLFCAVHRYSDKHGCPFDYR 149 (171)
Q Consensus 107 ~~~~rC~~C~kkv-gl~--gf~Cr-Cg~~FC~~HRy~e~H~C~fDyk 149 (171)
..+..|..|++.+ |+. |++|| ||.++|..-.-.=. .|.-+.-
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~-~C~~~~~ 400 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP-PCGRHGQ 400 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC-CC-----
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC-CCCCCch
Confidence 4578999999988 674 99999 99999976422111 3876644
No 26
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=81.45 E-value=0.5 Score=31.41 Aligned_cols=24 Identities=33% Similarity=0.987 Sum_probs=19.6
Q ss_pred CCCccccccccccc--cceeee-cCcc
Q 030802 108 GPKRCTTCNKRVGL--TGFNCR-CGNL 131 (171)
Q Consensus 108 ~~~rC~~C~kkvgl--~gf~Cr-Cg~~ 131 (171)
.+..|..|++++++ .+++|+ |+.+
T Consensus 18 ~~~~C~~Cg~~i~~gkq~~kC~dC~~~ 44 (61)
T 4b6d_A 18 KPESCVPCGKRIKFGKLSLKCRDCRVV 44 (61)
T ss_dssp SCEECTTTCCEECTTCEEEEESSSSCE
T ss_pred CCcccccccCEEEEeeEeeECCCCCCe
Confidence 46799999999987 489999 8643
No 27
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=80.49 E-value=0.33 Score=41.73 Aligned_cols=28 Identities=29% Similarity=0.758 Sum_probs=0.0
Q ss_pred CCcccccccccccc--ceeee-cCccccCCC
Q 030802 109 PKRCTTCNKRVGLT--GFNCR-CGNLFCAVH 136 (171)
Q Consensus 109 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 136 (171)
...|..|+++.+++ ...|| ||.+||+.+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~C 405 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNC 405 (434)
T ss_dssp -------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhh
Confidence 46899999999986 59999 999998653
No 28
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=77.90 E-value=1 Score=33.14 Aligned_cols=30 Identities=27% Similarity=0.789 Sum_probs=23.4
Q ss_pred CCccccccccccccceeee-cCccccCCCCCCCCC
Q 030802 109 PKRCTTCNKRVGLTGFNCR-CGNLFCAVHRYSDKH 142 (171)
Q Consensus 109 ~~rC~~C~kkvgl~gf~Cr-Cg~~FC~~HRy~e~H 142 (171)
..+|..|....++ +.|- ||+++|+ ||+..|
T Consensus 24 ~~~C~~C~~~~~~--W~CL~CG~vgCg--r~~~~H 54 (109)
T 3c5k_A 24 TQPCGDCGTIQEN--WVCLSCYQVYCG--RYINGH 54 (109)
T ss_dssp TCCCTTTCCCSSE--EEETTTCCEEEC--TTTTCH
T ss_pred CCcCccccCCCCe--eeeeecCccccC--CCcChH
Confidence 4689999987665 6688 9999998 555555
No 29
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=71.17 E-value=1.9 Score=27.67 Aligned_cols=26 Identities=35% Similarity=0.755 Sum_probs=22.0
Q ss_pred ch-hcCCCCCCccccCCchhHHHHHHH
Q 030802 17 LC-VNNCGFFGSAATMNMCSKCHKAMI 42 (171)
Q Consensus 17 lC-~n~CGFfGs~at~n~CSkCyr~~~ 42 (171)
.| ..+|-||=|-.|+-+|-.||...+
T Consensus 13 kCeTPnCpF~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 13 KCETPNCPFFMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp BCSSTTCCSBCCTTTTTSCHHHHHHHH
T ss_pred eecCCCCCeEEEecCccchHHHHHHHh
Confidence 45 458999999999999999998554
No 30
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=66.90 E-value=3.3 Score=25.30 Aligned_cols=24 Identities=38% Similarity=1.006 Sum_probs=18.6
Q ss_pred CCCccccccccc-cc--cceeee-cCcc
Q 030802 108 GPKRCTTCNKRV-GL--TGFNCR-CGNL 131 (171)
Q Consensus 108 ~~~rC~~C~kkv-gl--~gf~Cr-Cg~~ 131 (171)
.+..|..|++.| || .|++|+ |+.+
T Consensus 10 ~pt~C~~C~~~l~g~~~qg~~C~~C~~~ 37 (50)
T 1ptq_A 10 SPTFCDHCGSLLWGLVKQGLKCEDCGMN 37 (50)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCE
T ss_pred CCCCcCCCCceeeccCCccCEeCCCCCe
Confidence 467899999988 34 489999 7654
No 31
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=65.85 E-value=7.4 Score=25.30 Aligned_cols=26 Identities=35% Similarity=0.935 Sum_probs=19.9
Q ss_pred CCCCccccccccc-cc--cceeee-cCccc
Q 030802 107 EGPKRCTTCNKRV-GL--TGFNCR-CGNLF 132 (171)
Q Consensus 107 ~~~~rC~~C~kkv-gl--~gf~Cr-Cg~~F 132 (171)
..+..|..|++.| || .|++|+ |+.+.
T Consensus 21 ~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~ 50 (65)
T 2enz_A 21 KSPTFCEHCGTLLWGLARQGLKCDACGMNV 50 (65)
T ss_dssp CSCCBCSSSCCBCCCSSSCSEEESSSCCEE
T ss_pred CCCcCchhcChhheecCCcccccCCCCCcc
Confidence 3567899999987 44 489999 87654
No 32
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=62.39 E-value=3.4 Score=30.61 Aligned_cols=26 Identities=27% Similarity=0.599 Sum_probs=17.9
Q ss_pred cccccceeee-cCccccCCCCCCCCCCCC
Q 030802 118 RVGLTGFNCR-CGNLFCAVHRYSDKHGCP 145 (171)
Q Consensus 118 kvgl~gf~Cr-Cg~~FC~~HRy~e~H~C~ 145 (171)
+|-+..++|+ ||++| .-+......|+
T Consensus 62 ~L~v~p~~C~~CG~~F--~~~~~kPsrCP 88 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFVF--KAEINIPSRCP 88 (105)
T ss_dssp EEEECCCBBTTTCCBC--CCCSSCCSSCS
T ss_pred EEEEECcChhhCcCee--cccCCCCCCCc
Confidence 4556689999 99999 33454555565
No 33
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.75 E-value=4.3 Score=27.79 Aligned_cols=26 Identities=38% Similarity=1.017 Sum_probs=20.4
Q ss_pred CCCCccccccccc-cc--cceeee-cCccc
Q 030802 107 EGPKRCTTCNKRV-GL--TGFNCR-CGNLF 132 (171)
Q Consensus 107 ~~~~rC~~C~kkv-gl--~gf~Cr-Cg~~F 132 (171)
..+..|..|++.| || .|++|+ |+.++
T Consensus 26 ~~pt~C~~C~~~lwGl~kqg~~C~~C~~~~ 55 (83)
T 2yuu_A 26 GQPTFCSVCKDFVWGLNKQGYKCRQCNAAI 55 (83)
T ss_dssp SSCCCCSSSCCCCCSSSCCEEEETTTCCEE
T ss_pred CCCcChhhcChhhccccccccccCCcCCee
Confidence 3578899999988 44 489999 87664
No 34
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=61.32 E-value=3.1 Score=26.51 Aligned_cols=22 Identities=27% Similarity=0.836 Sum_probs=18.0
Q ss_pred Cccccccccccccceeee-cCccc
Q 030802 110 KRCTTCNKRVGLTGFNCR-CGNLF 132 (171)
Q Consensus 110 ~rC~~C~kkvgl~gf~Cr-Cg~~F 132 (171)
..|..|+|.| ..|++|+ |++.+
T Consensus 15 t~C~~C~k~i-~~G~kC~~Ck~~c 37 (49)
T 1kbe_A 15 QVCNVCQKSM-IFGVKCKHCRLKC 37 (49)
T ss_dssp CCCSSSCCSS-CCEEEETTTTEEE
T ss_pred cCccccCcee-ECcCCCCCCCCcc
Confidence 5799999988 5799999 77654
No 35
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=60.34 E-value=5 Score=28.26 Aligned_cols=23 Identities=30% Similarity=0.907 Sum_probs=18.2
Q ss_pred CCccccccccc----cccceeee-cCcc
Q 030802 109 PKRCTTCNKRV----GLTGFNCR-CGNL 131 (171)
Q Consensus 109 ~~rC~~C~kkv----gl~gf~Cr-Cg~~ 131 (171)
..+|..|+|.+ +|.||+|. |+.+
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~ 65 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAM 65 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCE
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChh
Confidence 46899999985 46799999 7654
No 36
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=59.21 E-value=4.4 Score=36.60 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=28.9
Q ss_pred CCCCccccccccc-ccc--ceeee-cCccccCCCCCCCCCCCCcc
Q 030802 107 EGPKRCTTCNKRV-GLT--GFNCR-CGNLFCAVHRYSDKHGCPFD 147 (171)
Q Consensus 107 ~~~~rC~~C~kkv-gl~--gf~Cr-Cg~~FC~~HRy~e~H~C~fD 147 (171)
..+..|..|++.+ ||. |++|+ ||.+.|....-.= -.|...
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v-~~C~~~ 570 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV-PPCGRH 570 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGS-CCC---
T ss_pred CCCcccccccccccccccCCcCCCCCCCccchhhhhcC-CCCCCC
Confidence 4578999999987 775 99999 9999987755432 367544
No 37
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=59.02 E-value=4.5 Score=27.32 Aligned_cols=24 Identities=29% Similarity=0.706 Sum_probs=19.1
Q ss_pred CCCCcccccccccccc---ceeee-cCc
Q 030802 107 EGPKRCTTCNKRVGLT---GFNCR-CGN 130 (171)
Q Consensus 107 ~~~~rC~~C~kkvgl~---gf~Cr-Cg~ 130 (171)
...-+|..|+..+.|. +.+|+ ||+
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~ 46 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGH 46 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCC
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCc
Confidence 3568999999999985 58897 754
No 38
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=58.42 E-value=5.1 Score=27.06 Aligned_cols=25 Identities=28% Similarity=0.699 Sum_probs=20.7
Q ss_pred CCCCccccccccccccceeee-cCcc
Q 030802 107 EGPKRCTTCNKRVGLTGFNCR-CGNL 131 (171)
Q Consensus 107 ~~~~rC~~C~kkvgl~gf~Cr-Cg~~ 131 (171)
..+..|..|+..|.-.|++|+ |+.+
T Consensus 33 ~~pt~C~~C~~~l~~qG~kC~~C~~~ 58 (72)
T 2fnf_X 33 GGPGWCDLCGREVLRQALRCANCKFT 58 (72)
T ss_dssp SSCCBCTTTSSBCSSCCEECTTSSCE
T ss_pred CCCcchhhhhHHHHhCcCccCCCCCe
Confidence 467899999999955699999 8765
No 39
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=57.39 E-value=5.9 Score=25.75 Aligned_cols=24 Identities=38% Similarity=1.006 Sum_probs=18.6
Q ss_pred CCCccccccccc-cc--cceeee-cCcc
Q 030802 108 GPKRCTTCNKRV-GL--TGFNCR-CGNL 131 (171)
Q Consensus 108 ~~~rC~~C~kkv-gl--~gf~Cr-Cg~~ 131 (171)
.+..|..|++.| || .|++|+ |+.+
T Consensus 19 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~ 46 (65)
T 3uej_A 19 SPTFCDHCGSLLWGLVKQGLKCEDCGMN 46 (65)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCE
T ss_pred CCCcccccChhhhccCceeeECCCCCCe
Confidence 467899999987 44 489998 7654
No 40
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=56.00 E-value=4.9 Score=26.37 Aligned_cols=30 Identities=33% Similarity=0.790 Sum_probs=23.7
Q ss_pred CCCccccccccccccc----eeee---cCccccCCCC
Q 030802 108 GPKRCTTCNKRVGLTG----FNCR---CGNLFCAVHR 137 (171)
Q Consensus 108 ~~~rC~~C~kkvgl~g----f~Cr---Cg~~FC~~HR 137 (171)
...+|..|+..|.+.+ ..|+ |+..||-.=.
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~ 41 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCL 41 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSC
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcC
Confidence 4568999998888863 8898 9999996543
No 41
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=55.82 E-value=3.5 Score=27.32 Aligned_cols=14 Identities=43% Similarity=0.824 Sum_probs=11.3
Q ss_pred CCCccccccccccc
Q 030802 108 GPKRCTTCNKRVGL 121 (171)
Q Consensus 108 ~~~rC~~C~kkvgl 121 (171)
.|.||++|+|-+|-
T Consensus 2 iPVRCFTCGkvi~~ 15 (55)
T 1ef4_A 2 IPVRCLSCGKPVSA 15 (55)
T ss_dssp CSSSCSCTTSCCHH
T ss_pred CCeecCCCCCChhH
Confidence 36799999998764
No 42
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=54.77 E-value=4.3 Score=25.02 Aligned_cols=24 Identities=38% Similarity=0.868 Sum_probs=19.4
Q ss_pred CCCccccccccccccceeee-cCccc
Q 030802 108 GPKRCTTCNKRVGLTGFNCR-CGNLF 132 (171)
Q Consensus 108 ~~~rC~~C~kkvgl~gf~Cr-Cg~~F 132 (171)
.+..|..|++.|- .|++|+ |+...
T Consensus 13 ~pt~C~~C~~~l~-qG~~C~~C~~~~ 37 (52)
T 1faq_A 13 KLAFCDICQKFLL-NGFRCQTCGYKF 37 (52)
T ss_dssp SCEECTTSSSEEC-SEEECTTTTCCB
T ss_pred CCcCCCCcccccc-cCCEeCCCCCeE
Confidence 4678999999875 899999 87654
No 43
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=54.71 E-value=4.5 Score=26.14 Aligned_cols=25 Identities=28% Similarity=0.699 Sum_probs=20.2
Q ss_pred CCCCccccccccccccceeee-cCcc
Q 030802 107 EGPKRCTTCNKRVGLTGFNCR-CGNL 131 (171)
Q Consensus 107 ~~~~rC~~C~kkvgl~gf~Cr-Cg~~ 131 (171)
..+..|..|++.|.-.|++|+ |+.+
T Consensus 20 ~~pt~C~~C~~~i~kqg~kC~~C~~~ 45 (59)
T 1rfh_A 20 GGPGWCDLCGREVLRQALRCANCKFT 45 (59)
T ss_dssp SCCEECTTTCSEECSCCEECTTTSCE
T ss_pred CCCeEchhcchhhhhCccEeCCCCCe
Confidence 457899999999954699999 7654
No 44
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=53.33 E-value=4.5 Score=27.99 Aligned_cols=14 Identities=50% Similarity=0.885 Sum_probs=11.7
Q ss_pred CCCccccccccccc
Q 030802 108 GPKRCTTCNKRVGL 121 (171)
Q Consensus 108 ~~~rC~~C~kkvgl 121 (171)
.|.||++|+|-+|-
T Consensus 3 iPVRCFTCGkvi~~ 16 (70)
T 1twf_J 3 VPVRCFSCGKVVGD 16 (70)
T ss_dssp CCSBCTTTCCBCTT
T ss_pred CCeecCCCCCChHH
Confidence 36799999998865
No 45
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=53.23 E-value=4.3 Score=26.98 Aligned_cols=35 Identities=29% Similarity=0.741 Sum_probs=24.8
Q ss_pred ccccccccccccc-eeee-cCccccCC---CCCCCCCCCC
Q 030802 111 RCTTCNKRVGLTG-FNCR-CGNLFCAV---HRYSDKHGCP 145 (171)
Q Consensus 111 rC~~C~kkvgl~g-f~Cr-Cg~~FC~~---HRy~e~H~C~ 145 (171)
.|+.|.+.+.-.+ |.|. |...||.. -=+-.-|+|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CP 56 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCP 56 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSS
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCc
Confidence 4999999986554 9998 99999853 2223356664
No 46
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.71 E-value=11 Score=25.11 Aligned_cols=29 Identities=28% Similarity=0.595 Sum_probs=17.5
Q ss_pred Cccccccccccccceee--ecCccccCCCCC
Q 030802 110 KRCTTCNKRVGLTGFNC--RCGNLFCAVHRY 138 (171)
Q Consensus 110 ~rC~~C~kkvgl~gf~C--rCg~~FC~~HRy 138 (171)
-+|..|++.|....|.. +=|..||..|-.
T Consensus 43 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~ 73 (82)
T 2co8_A 43 FRCHTCEATLWPGGYEQHPGDGHFYCLQHLP 73 (82)
T ss_dssp CBCSSSCCBCCTTSEECCTTTCCCEETTTCC
T ss_pred CEEcCCCCCcCCCceeEeCcCCEEEChHHHH
Confidence 45566676666555543 456677766654
No 47
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=50.06 E-value=9 Score=24.99 Aligned_cols=24 Identities=33% Similarity=0.946 Sum_probs=18.8
Q ss_pred CCCccccccccc-cc--cceeee-cCcc
Q 030802 108 GPKRCTTCNKRV-GL--TGFNCR-CGNL 131 (171)
Q Consensus 108 ~~~rC~~C~kkv-gl--~gf~Cr-Cg~~ 131 (171)
.+..|..|++.| || .|++|+ |+.+
T Consensus 23 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~ 50 (66)
T 1y8f_A 23 TPTYCYECEGLLWGIARQGMRCTECGVK 50 (66)
T ss_dssp SCCCCTTTCCCCCSSCCEEEEETTTCCE
T ss_pred CCcChhhcChhhcccCcceeEcCCCCCe
Confidence 567899999988 44 489999 7665
No 48
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.50 E-value=14 Score=25.40 Aligned_cols=43 Identities=23% Similarity=0.494 Sum_probs=29.3
Q ss_pred CCCCccccccccc-cc--cceeee-cCccccCCCCCCCCCCCCccch
Q 030802 107 EGPKRCTTCNKRV-GL--TGFNCR-CGNLFCAVHRYSDKHGCPFDYR 149 (171)
Q Consensus 107 ~~~~rC~~C~kkv-gl--~gf~Cr-Cg~~FC~~HRy~e~H~C~fDyk 149 (171)
..+..|..|++.| || .|++|+ |+..+=......=...|..++.
T Consensus 26 ~~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~v~~~C~~~~~ 72 (85)
T 2eli_A 26 GSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLCGMDHT 72 (85)
T ss_dssp SSCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTTSCSCCCCCCC
T ss_pred CCCcCCcccCccccccccCCCcCCCcCCccCHhHHhhcCCcCCcchh
Confidence 3578899999987 44 489999 8777533333333456877765
No 49
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=46.63 E-value=7.3 Score=26.32 Aligned_cols=26 Identities=38% Similarity=1.034 Sum_probs=20.0
Q ss_pred CCCCccccccccc-cc--cceeee-cCccc
Q 030802 107 EGPKRCTTCNKRV-GL--TGFNCR-CGNLF 132 (171)
Q Consensus 107 ~~~~rC~~C~kkv-gl--~gf~Cr-Cg~~F 132 (171)
..+..|..|++-| || .|++|+ |+.+.
T Consensus 32 ~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~ 61 (77)
T 2enn_A 32 PQPTFCSVCHEFVWGLNKQGYQCRQCNAAI 61 (77)
T ss_dssp SSCEECSSSCCEECCTTCCEEECSSSCCEE
T ss_pred CCCcCccccChhhccccccccCcCCCCCcC
Confidence 3578999999987 44 489999 87654
No 50
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=46.15 E-value=5.9 Score=27.10 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=11.0
Q ss_pred CCCccccccccccc
Q 030802 108 GPKRCTTCNKRVGL 121 (171)
Q Consensus 108 ~~~rC~~C~kkvgl 121 (171)
.|-||++|+|-+|-
T Consensus 3 IPVRCFTCGkvi~~ 16 (66)
T 4ayb_N 3 IPIRCFTCGSLIAD 16 (66)
T ss_dssp CCSBCTTTCCBCHH
T ss_pred CCcccCCCcHhHHH
Confidence 36799999997753
No 51
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.89 E-value=29 Score=21.79 Aligned_cols=25 Identities=24% Similarity=0.572 Sum_probs=18.0
Q ss_pred CCccccccccccccceeeecCccccC
Q 030802 109 PKRCTTCNKRVGLTGFNCRCGNLFCA 134 (171)
Q Consensus 109 ~~rC~~C~kkvgl~gf~CrCg~~FC~ 134 (171)
...|..|...+.- ...-.||++||.
T Consensus 20 ~~~C~IC~~~~~~-~~~~~CgH~fC~ 44 (73)
T 2ysl_A 20 EVICPICLDILQK-PVTIDCGHNFCL 44 (73)
T ss_dssp CCBCTTTCSBCSS-EEECTTCCEEEH
T ss_pred CCEeccCCcccCC-eEEcCCCChhhH
Confidence 4689999876543 334489999996
No 52
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.74 E-value=30 Score=21.25 Aligned_cols=25 Identities=24% Similarity=0.572 Sum_probs=18.0
Q ss_pred CCccccccccccccceeeecCccccC
Q 030802 109 PKRCTTCNKRVGLTGFNCRCGNLFCA 134 (171)
Q Consensus 109 ~~rC~~C~kkvgl~gf~CrCg~~FC~ 134 (171)
...|..|...+.- ...-.||++||.
T Consensus 20 ~~~C~IC~~~~~~-p~~~~CgH~fC~ 44 (63)
T 2ysj_A 20 EVICPICLDILQK-PVTIDCGHNFCL 44 (63)
T ss_dssp CCBCTTTCSBCSS-CEECTTSSEECH
T ss_pred CCCCCcCCchhCC-eEEeCCCCcchH
Confidence 4679999866543 344589999985
No 53
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=41.71 E-value=7.1 Score=24.62 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=16.4
Q ss_pred CccccccccccccceeeecCccccCCC
Q 030802 110 KRCTTCNKRVGLTGFNCRCGNLFCAVH 136 (171)
Q Consensus 110 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 136 (171)
-+|..|++.|....|.=+=|..||..|
T Consensus 40 F~C~~C~~~L~~~~~~~~~g~~yC~~~ 66 (72)
T 3f6q_B 40 FVCAQCFQQFPEGLFYEFEGRKYCEHD 66 (72)
T ss_dssp SSCTTTCCCCGGGCCEEETTEEECHHH
T ss_pred CcccCCCCCCCCCCeEeECCeEeCHHH
Confidence 356677777665555555566666554
No 54
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.89 E-value=14 Score=23.89 Aligned_cols=29 Identities=21% Similarity=0.426 Sum_probs=22.2
Q ss_pred CccccccccccccceeeecCccccCCCCC
Q 030802 110 KRCTTCNKRVGLTGFNCRCGNLFCAVHRY 138 (171)
Q Consensus 110 ~rC~~C~kkvgl~gf~CrCg~~FC~~HRy 138 (171)
-+|..|++.|....|.=+=|..||..|-.
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 64 (76)
T 1x68_A 36 FNCGKCSVSLVGKGFLTQNKEIFCQKCGS 64 (76)
T ss_dssp CBCTTTCCBCSSSCEEEETTEEEETTTTC
T ss_pred CChhhCCCcCCCCceEeECCEEECHHHhh
Confidence 46778888887666777888889987743
No 55
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=40.84 E-value=16 Score=22.65 Aligned_cols=27 Identities=26% Similarity=0.810 Sum_probs=18.5
Q ss_pred CCCccccccccccc--------------cceeee-cCccccC
Q 030802 108 GPKRCTTCNKRVGL--------------TGFNCR-CGNLFCA 134 (171)
Q Consensus 108 ~~~rC~~C~kkvgl--------------~gf~Cr-Cg~~FC~ 134 (171)
.+-.|..|+|.... ..|.|. ||..|-.
T Consensus 16 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 46789999887542 148887 7776654
No 56
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=39.57 E-value=13 Score=27.16 Aligned_cols=26 Identities=27% Similarity=0.724 Sum_probs=20.8
Q ss_pred ccccccccccccceeee-cCccccCCCCCC
Q 030802 111 RCTTCNKRVGLTGFNCR-CGNLFCAVHRYS 139 (171)
Q Consensus 111 rC~~C~kkvgl~gf~Cr-Cg~~FC~~HRy~ 139 (171)
+|..|+|.. .|.|. |...||..|...
T Consensus 60 ~C~~C~k~~---~~~C~~Cp~sfC~~c~~g 86 (107)
T 4gne_A 60 QCDECSSAA---VSFCEFCPHSFCKDHEKG 86 (107)
T ss_dssp BCTTTCSBC---CEECSSSSCEECTTTCTT
T ss_pred CCCcCCCCC---CcCcCCCCcchhhhccCC
Confidence 577888765 38999 999999998753
No 57
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.57 E-value=25 Score=22.31 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=25.4
Q ss_pred CCCccccccccccccceeeecCccccCCC--C-CCCCCCCCccchHH
Q 030802 108 GPKRCTTCNKRVGLTGFNCRCGNLFCAVH--R-YSDKHGCPFDYRTA 151 (171)
Q Consensus 108 ~~~rC~~C~kkvgl~gf~CrCg~~FC~~H--R-y~e~H~C~fDyk~~ 151 (171)
....|..|...+.. ...-.||++||..= + +.....|.+--+..
T Consensus 14 ~~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 14 TVPECAICLQTCVH-PVSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp SCCBCSSSSSBCSS-EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred CCCCCccCCcccCC-CEEccCCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 34679999876533 34457999998532 1 23335676554433
No 58
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=39.20 E-value=9.3 Score=24.29 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=18.9
Q ss_pred CCCcccccccccccc--------------ceeee-cCccccC
Q 030802 108 GPKRCTTCNKRVGLT--------------GFNCR-CGNLFCA 134 (171)
Q Consensus 108 ~~~rC~~C~kkvgl~--------------gf~Cr-Cg~~FC~ 134 (171)
+|-.|..|+|..... .|.|. ||..|-.
T Consensus 3 Kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 356788888765431 58898 8888854
No 59
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.61 E-value=9.9 Score=24.58 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=20.2
Q ss_pred CCCccccccccccccceeee-cCcc
Q 030802 108 GPKRCTTCNKRVGLTGFNCR-CGNL 131 (171)
Q Consensus 108 ~~~rC~~C~kkvgl~gf~Cr-Cg~~ 131 (171)
.+..|..|+.+++.---.|| ||++
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC
T ss_pred CCccCCCCCCcCCCCceecCCCCCc
Confidence 45679999999888778999 9887
No 60
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=37.51 E-value=12 Score=26.86 Aligned_cols=20 Identities=40% Similarity=0.795 Sum_probs=17.5
Q ss_pred ceeeecCccccCCCCCCCCC
Q 030802 123 GFNCRCGNLFCAVHRYSDKH 142 (171)
Q Consensus 123 gf~CrCg~~FC~~HRy~e~H 142 (171)
=|+|.|++..=+.+|||..|
T Consensus 48 FFkC~C~~Rt~sl~r~P~~~ 67 (92)
T 2kwq_A 48 FFKCPCGNRTISLDRLPKKH 67 (92)
T ss_dssp EEECTTSCEEEESSSSCCSC
T ss_pred EEECCCCCceeEeeeCCCCC
Confidence 39999999999999999864
No 61
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.41 E-value=10 Score=24.18 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=17.8
Q ss_pred CccccccccccccceeeecCccccCCC
Q 030802 110 KRCTTCNKRVGLTGFNCRCGNLFCAVH 136 (171)
Q Consensus 110 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 136 (171)
-+|..|++.|....|.=+=|..||..|
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c 58 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPC 58 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHH
Confidence 467777777766666656666676554
No 62
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.72 E-value=51 Score=20.35 Aligned_cols=27 Identities=26% Similarity=0.780 Sum_probs=17.6
Q ss_pred CCCCccccccccccc--------------cceeee-cCcccc
Q 030802 107 EGPKRCTTCNKRVGL--------------TGFNCR-CGNLFC 133 (171)
Q Consensus 107 ~~~~rC~~C~kkvgl--------------~gf~Cr-Cg~~FC 133 (171)
..+-.|..|++.... ..|.|. ||..|-
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFI 57 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEES
T ss_pred CCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccC
Confidence 346788889876542 147777 766664
No 63
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=33.28 E-value=12 Score=26.25 Aligned_cols=42 Identities=24% Similarity=0.405 Sum_probs=26.1
Q ss_pred CCCCcccccccccccc-----ceeee-cCccccCCCCC---CCCCCCCccc
Q 030802 107 EGPKRCTTCNKRVGLT-----GFNCR-CGNLFCAVHRY---SDKHGCPFDY 148 (171)
Q Consensus 107 ~~~~rC~~C~kkvgl~-----gf~Cr-Cg~~FC~~HRy---~e~H~C~fDy 148 (171)
..+..|..|++.|=.+ ||+|+ |+.+.=.++.. .=-..|..+|
T Consensus 33 ~~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~k~~~v~~~C~~~~ 83 (84)
T 2row_A 33 HFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMDKKEEIIAPCKVYY 83 (84)
T ss_dssp SSCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHHHTCTTCCCCSTTT
T ss_pred CCCcchhhcCHhhhccccCCCCCEecCCCCccchhHhCCccccccccCcCC
Confidence 4568899999887432 89999 76665333333 2334555444
No 64
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=32.73 E-value=15 Score=22.48 Aligned_cols=26 Identities=19% Similarity=0.554 Sum_probs=16.9
Q ss_pred CCCcccccccccc-----------ccceeee-cCcccc
Q 030802 108 GPKRCTTCNKRVG-----------LTGFNCR-CGNLFC 133 (171)
Q Consensus 108 ~~~rC~~C~kkvg-----------l~gf~Cr-Cg~~FC 133 (171)
.+-.|..|+|... -..|.|. ||..|-
T Consensus 13 k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp SEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred CCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 3567888887421 2258887 877763
No 65
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.66 E-value=12 Score=25.10 Aligned_cols=10 Identities=20% Similarity=0.763 Sum_probs=4.5
Q ss_pred Cccccccccc
Q 030802 110 KRCTTCNKRV 119 (171)
Q Consensus 110 ~rC~~C~kkv 119 (171)
.+|..|++.|
T Consensus 26 ~~C~~C~~~I 35 (89)
T 1x64_A 26 PLCDKCGSGI 35 (89)
T ss_dssp CBCTTTCCBC
T ss_pred CCcccCCCEe
Confidence 3444444443
No 66
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=32.62 E-value=20 Score=20.74 Aligned_cols=11 Identities=27% Similarity=0.815 Sum_probs=6.6
Q ss_pred ceeee-cCcccc
Q 030802 123 GFNCR-CGNLFC 133 (171)
Q Consensus 123 gf~Cr-Cg~~FC 133 (171)
.|.|. ||..|-
T Consensus 29 ~~~C~~C~~~f~ 40 (57)
T 1bbo_A 29 PYHCTYCNFSFK 40 (57)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCchhc
Confidence 47776 666553
No 67
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=32.30 E-value=18 Score=27.85 Aligned_cols=30 Identities=20% Similarity=0.530 Sum_probs=25.4
Q ss_pred CCCcccccccccccc---ceeee-cCccccCCCC
Q 030802 108 GPKRCTTCNKRVGLT---GFNCR-CGNLFCAVHR 137 (171)
Q Consensus 108 ~~~rC~~C~kkvgl~---gf~Cr-Cg~~FC~~HR 137 (171)
....|..|.+.+|++ |..|. |...+|..=+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 357899999999996 78999 9999998655
No 68
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=31.64 E-value=13 Score=23.29 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=17.3
Q ss_pred CccccccccccccceeeecCccccCCC
Q 030802 110 KRCTTCNKRVGLTGFNCRCGNLFCAVH 136 (171)
Q Consensus 110 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 136 (171)
-+|..|++.|....|.=+=|..||..|
T Consensus 32 F~C~~C~~~L~~~~~~~~~g~~yC~~~ 58 (66)
T 1nyp_A 32 FVCAKCEKPFLGHRHYERKGLAYCETH 58 (66)
T ss_dssp CBCTTTCCBCSSSCCEEETTEEECHHH
T ss_pred CEECCCCCCCCCCceEeECCcEECHHH
Confidence 466777777765556666666666544
No 69
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=31.56 E-value=22 Score=20.89 Aligned_cols=11 Identities=27% Similarity=0.927 Sum_probs=6.5
Q ss_pred ceeee-cCcccc
Q 030802 123 GFNCR-CGNLFC 133 (171)
Q Consensus 123 gf~Cr-Cg~~FC 133 (171)
.|.|. ||..|-
T Consensus 30 ~~~C~~C~~~f~ 41 (60)
T 2adr_A 30 PYPCGLCNRAFT 41 (60)
T ss_dssp SEECTTTCCEES
T ss_pred CccCCCCCCccC
Confidence 36676 665553
No 70
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.56 E-value=19 Score=18.84 Aligned_cols=11 Identities=27% Similarity=0.643 Sum_probs=5.9
Q ss_pred ceeee-cCcccc
Q 030802 123 GFNCR-CGNLFC 133 (171)
Q Consensus 123 gf~Cr-Cg~~FC 133 (171)
.|.|. ||..|-
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elq_A 9 PFKCSLCEYATR 20 (36)
T ss_dssp SEECSSSSCEES
T ss_pred CccCCCCCchhC
Confidence 45665 555553
No 71
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.53 E-value=14 Score=23.54 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=13.5
Q ss_pred CccccccccccccceeeecCccccCC
Q 030802 110 KRCTTCNKRVGLTGFNCRCGNLFCAV 135 (171)
Q Consensus 110 ~rC~~C~kkvgl~gf~CrCg~~FC~~ 135 (171)
-+|..|++.|....|.=+=|..||..
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~ 59 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEG 59 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHH
Confidence 34556666664444544444555544
No 72
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=31.42 E-value=20 Score=20.70 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=6.7
Q ss_pred CCccccccccc
Q 030802 109 PKRCTTCNKRV 119 (171)
Q Consensus 109 ~~rC~~C~kkv 119 (171)
+-.|..|++..
T Consensus 4 ~~~C~~C~~~f 14 (57)
T 3uk3_C 4 SRECSYCGKFF 14 (57)
T ss_dssp -CBCTTTCCBC
T ss_pred CccCCCCcchh
Confidence 45677777654
No 73
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.86 E-value=14 Score=23.54 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=18.2
Q ss_pred CccccccccccccceeeecCccccCCC
Q 030802 110 KRCTTCNKRVGLTGFNCRCGNLFCAVH 136 (171)
Q Consensus 110 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 136 (171)
-+|..|++.|.-..|.=+=|..||..|
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~c 62 (72)
T 1x4l_A 36 FNCKKCSLSLVGRGFLTERDDILCPDC 62 (72)
T ss_dssp CBCSSSCCBCTTSCCEECSSSEECHHH
T ss_pred CEeccCCCcCCCCccEeECCEEEChhH
Confidence 467778877765566666677777554
No 74
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.81 E-value=16 Score=24.42 Aligned_cols=26 Identities=27% Similarity=0.744 Sum_probs=19.5
Q ss_pred CCCCcccccccccc-c--cceeee-cCccc
Q 030802 107 EGPKRCTTCNKRVG-L--TGFNCR-CGNLF 132 (171)
Q Consensus 107 ~~~~rC~~C~kkvg-l--~gf~Cr-Cg~~F 132 (171)
..+..|..|++.|- | .|++|+ |+...
T Consensus 26 ~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~ 55 (74)
T 2db6_A 26 KKPKFCDVCARMIVLNNKFGLRCKNCKTNI 55 (74)
T ss_dssp SSCEECSSSCCEECHHHHEEEEESSSCCEE
T ss_pred CCCcCchhcChhhccccCCccccCCCCCcc
Confidence 35788999999873 3 389999 86653
No 75
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.75 E-value=68 Score=20.27 Aligned_cols=26 Identities=23% Similarity=0.645 Sum_probs=18.2
Q ss_pred CCccccccccccccceeeecCccccCC
Q 030802 109 PKRCTTCNKRVGLTGFNCRCGNLFCAV 135 (171)
Q Consensus 109 ~~rC~~C~kkvgl~gf~CrCg~~FC~~ 135 (171)
...|..|...+.- ...-.||++||..
T Consensus 19 ~~~C~IC~~~~~~-p~~~~CgH~fC~~ 44 (85)
T 2ecv_A 19 EVTCPICLELLTQ-PLSLDCGHSFCQA 44 (85)
T ss_dssp CCCCTTTCSCCSS-CBCCSSSCCBCTT
T ss_pred CCCCCCCCcccCC-ceeCCCCCHHHHH
Confidence 4679999876533 3344799999964
No 76
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.12 E-value=27 Score=22.72 Aligned_cols=29 Identities=24% Similarity=0.607 Sum_probs=22.1
Q ss_pred CccccccccccccceeeecCccccCCCCC
Q 030802 110 KRCTTCNKRVGLTGFNCRCGNLFCAVHRY 138 (171)
Q Consensus 110 ~rC~~C~kkvgl~gf~CrCg~~FC~~HRy 138 (171)
-+|..|++.|....|.=+=|..||..|-.
T Consensus 44 F~C~~C~~~L~~~~f~~~~~~~~C~~c~~ 72 (82)
T 2ehe_A 44 FRCCRCQRSLADEPFTCQDSELLCNDCYC 72 (82)
T ss_dssp SBCTTTCCBCSSCCEEEETTEEEETTTSS
T ss_pred CeecCCCCccCCCccEeeCCEEECHHHHh
Confidence 56788888887667877778888877643
No 77
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.04 E-value=14 Score=23.80 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=12.8
Q ss_pred ccccccccccccceeeecCccccCC
Q 030802 111 RCTTCNKRVGLTGFNCRCGNLFCAV 135 (171)
Q Consensus 111 rC~~C~kkvgl~gf~CrCg~~FC~~ 135 (171)
+|..|++.|....|.=+=|..||..
T Consensus 41 ~C~~C~~~L~~~~~~~~~g~~yC~~ 65 (77)
T 1g47_A 41 VCAQCFQQFPEGLFYEFEGRKYCEH 65 (77)
T ss_dssp CCTTTCCCCGGGCSEEETTEEECHH
T ss_pred eECCCCCCCCCCCeEeECCeEeCHH
Confidence 4555555555444544545555543
No 78
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.58 E-value=23 Score=24.65 Aligned_cols=31 Identities=29% Similarity=0.780 Sum_probs=25.4
Q ss_pred CCCcccccccccccc---ceeee-cCccccCCCCC
Q 030802 108 GPKRCTTCNKRVGLT---GFNCR-CGNLFCAVHRY 138 (171)
Q Consensus 108 ~~~rC~~C~kkvgl~---gf~Cr-Cg~~FC~~HRy 138 (171)
..++|..|...+|++ |..|+ |-+.-|..=|-
T Consensus 24 ~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv 58 (76)
T 2csz_A 24 SDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRI 58 (76)
T ss_dssp CCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEE
T ss_pred CccchhhhCccccccccCCCcCcccChhhcccccc
Confidence 458999999999996 78999 98777776553
No 79
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=29.45 E-value=26 Score=26.34 Aligned_cols=29 Identities=24% Similarity=0.740 Sum_probs=24.0
Q ss_pred CCcccccccccccc---ceeee-cCccccCCCC
Q 030802 109 PKRCTTCNKRVGLT---GFNCR-CGNLFCAVHR 137 (171)
Q Consensus 109 ~~rC~~C~kkvgl~---gf~Cr-Cg~~FC~~HR 137 (171)
...|..|.+.+|++ |..|. |...+|..=+
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 46899999999975 67898 9999998544
No 80
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.11 E-value=16 Score=23.15 Aligned_cols=27 Identities=22% Similarity=0.509 Sum_probs=16.0
Q ss_pred CccccccccccccceeeecCccccCCC
Q 030802 110 KRCTTCNKRVGLTGFNCRCGNLFCAVH 136 (171)
Q Consensus 110 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 136 (171)
-+|..|++.|....|.=+=|..||..|
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~c 60 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPC 60 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHH
T ss_pred CcccccCCccCCCccCccCCeEECHHH
Confidence 356677776665556555566666543
No 81
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.99 E-value=57 Score=21.01 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=18.4
Q ss_pred CCcccccccccccc---ceeeecCccccC
Q 030802 109 PKRCTTCNKRVGLT---GFNCRCGNLFCA 134 (171)
Q Consensus 109 ~~rC~~C~kkvgl~---gf~CrCg~~FC~ 134 (171)
...|..|...+... ...-.||++||.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~ 43 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICR 43 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEH
T ss_pred CCCCccCCccccccCCCeEECCCCChhhH
Confidence 45799998766541 344579999986
No 82
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=28.81 E-value=16 Score=17.59 Aligned_cols=10 Identities=30% Similarity=1.075 Sum_probs=5.4
Q ss_pred eeee-cCcccc
Q 030802 124 FNCR-CGNLFC 133 (171)
Q Consensus 124 f~Cr-Cg~~FC 133 (171)
|.|. ||..|-
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 4555 665554
No 83
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=28.52 E-value=32 Score=24.28 Aligned_cols=31 Identities=19% Similarity=0.455 Sum_probs=21.1
Q ss_pred CCccccccccccccceeee---cCccccCCCCCCCCC
Q 030802 109 PKRCTTCNKRVGLTGFNCR---CGNLFCAVHRYSDKH 142 (171)
Q Consensus 109 ~~rC~~C~kkvgl~gf~Cr---Cg~~FC~~HRy~e~H 142 (171)
..+|..|.+.- -.-+.|- ||+++|++ |+..|
T Consensus 25 ~~~C~~C~~~~-~~lw~CL~~~Cg~vgCgr--~~~~H 58 (97)
T 2uzg_A 25 LGTCQDCKVQG-PNLWACLENRCSYVGCGE--SQVDH 58 (97)
T ss_dssp TTCCSSSCCCC-SSCEEECCTTCCCEECCT--TTTCH
T ss_pred CCcCcCcCCCC-CCceeeecccCCCcccCC--CcChH
Confidence 46899998432 2226887 99999997 54443
No 84
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.30 E-value=17 Score=17.63 Aligned_cols=10 Identities=40% Similarity=1.344 Sum_probs=6.1
Q ss_pred eeee-cCcccc
Q 030802 124 FNCR-CGNLFC 133 (171)
Q Consensus 124 f~Cr-Cg~~FC 133 (171)
|.|. ||..|-
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 5665 666664
No 85
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=28.21 E-value=15 Score=25.88 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=10.6
Q ss_pred cceeeecCccccCC
Q 030802 122 TGFNCRCGNLFCAV 135 (171)
Q Consensus 122 ~gf~CrCg~~FC~~ 135 (171)
..+.||||..|--.
T Consensus 22 y~ypCrCGd~F~it 35 (83)
T 1yop_A 22 FTYPCPCGDRFQIY 35 (83)
T ss_dssp EEEEETTTEEEEEE
T ss_pred EEEeCCCCCeEEEC
Confidence 45889999988543
No 86
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.05 E-value=17 Score=17.63 Aligned_cols=10 Identities=30% Similarity=0.753 Sum_probs=5.7
Q ss_pred eeee-cCcccc
Q 030802 124 FNCR-CGNLFC 133 (171)
Q Consensus 124 f~Cr-Cg~~FC 133 (171)
|.|. ||..|-
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 5565 665553
No 87
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.04 E-value=18 Score=17.61 Aligned_cols=11 Identities=36% Similarity=1.207 Sum_probs=6.8
Q ss_pred eeee-cCccccC
Q 030802 124 FNCR-CGNLFCA 134 (171)
Q Consensus 124 f~Cr-Cg~~FC~ 134 (171)
|.|. ||..|-.
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 6666 6666643
No 88
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.96 E-value=61 Score=19.13 Aligned_cols=25 Identities=24% Similarity=0.628 Sum_probs=17.8
Q ss_pred CCccccccccccccceeeecCccccC
Q 030802 109 PKRCTTCNKRVGLTGFNCRCGNLFCA 134 (171)
Q Consensus 109 ~~rC~~C~kkvgl~gf~CrCg~~FC~ 134 (171)
...|..|...+.. ...-.||++||.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~CgH~fC~ 39 (58)
T 2ecj_A 15 EASCSVCLEYLKE-PVIIECGHNFCK 39 (58)
T ss_dssp CCBCSSSCCBCSS-CCCCSSCCCCCH
T ss_pred CCCCccCCcccCc-cEeCCCCCccCH
Confidence 4579999876543 344579999985
No 89
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=27.74 E-value=16 Score=25.21 Aligned_cols=31 Identities=16% Similarity=0.516 Sum_probs=21.9
Q ss_pred CCCCCCccccccc-ccccc--c-eeee-cCccccCC
Q 030802 105 AKEGPKRCTTCNK-RVGLT--G-FNCR-CGNLFCAV 135 (171)
Q Consensus 105 ~~~~~~rC~~C~k-kvgl~--g-f~Cr-Cg~~FC~~ 135 (171)
.+..+..|..|+| +|.-. | -.|+ |+.+|=+-
T Consensus 23 ~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 23 KHKKKYKCPVCGFPKLKRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred hcccCccCCCCCCceeEEEEeEEEECCCCCcEEECC
Confidence 3456789999997 33222 3 8899 99998764
No 90
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=27.65 E-value=58 Score=21.15 Aligned_cols=28 Identities=18% Similarity=0.528 Sum_probs=19.8
Q ss_pred CCCCccccccccccc--------------cceeee-cCccccC
Q 030802 107 EGPKRCTTCNKRVGL--------------TGFNCR-CGNLFCA 134 (171)
Q Consensus 107 ~~~~rC~~C~kkvgl--------------~gf~Cr-Cg~~FC~ 134 (171)
..+-.|..|++.... ..|.|. |+..|-.
T Consensus 15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 57 (106)
T 2ee8_A 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRR 57 (106)
T ss_dssp CCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSC
T ss_pred CcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCC
Confidence 346789999886642 148898 8888854
No 91
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.54 E-value=24 Score=21.77 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=8.5
Q ss_pred CCCccccccccc
Q 030802 108 GPKRCTTCNKRV 119 (171)
Q Consensus 108 ~~~rC~~C~kkv 119 (171)
.+-.|..|.+..
T Consensus 13 k~~~C~~C~k~f 24 (72)
T 1x6e_A 13 KPYGCVECGKAF 24 (72)
T ss_dssp CCEECSSSCCEE
T ss_pred CCccCCCCCCcc
Confidence 457788888764
No 92
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=27.49 E-value=41 Score=22.68 Aligned_cols=27 Identities=22% Similarity=0.624 Sum_probs=18.6
Q ss_pred CCCcccccccccccc--------------ceeee-cCccccC
Q 030802 108 GPKRCTTCNKRVGLT--------------GFNCR-CGNLFCA 134 (171)
Q Consensus 108 ~~~rC~~C~kkvgl~--------------gf~Cr-Cg~~FC~ 134 (171)
.+-.|..|+|..... .|.|. ||..|-.
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp TTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 356799998865431 58887 8877753
No 93
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=27.44 E-value=16 Score=17.73 Aligned_cols=10 Identities=40% Similarity=1.122 Sum_probs=5.5
Q ss_pred eeee-cCcccc
Q 030802 124 FNCR-CGNLFC 133 (171)
Q Consensus 124 f~Cr-Cg~~FC 133 (171)
|.|. ||..|-
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 5555 655553
No 94
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=27.22 E-value=17 Score=24.10 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=19.4
Q ss_pred CCCccccccccccccceeee-cCc
Q 030802 108 GPKRCTTCNKRVGLTGFNCR-CGN 130 (171)
Q Consensus 108 ~~~rC~~C~kkvgl~gf~Cr-Cg~ 130 (171)
...-|..|+-++....-.|| ||+
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~ 41 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCC
T ss_pred chhhhccccCcCCcccccccCCCC
Confidence 45678999999999999999 874
No 95
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=33.19 E-value=13 Score=17.92 Aligned_cols=12 Identities=33% Similarity=1.035 Sum_probs=7.5
Q ss_pred eeee-cCccccCC
Q 030802 124 FNCR-CGNLFCAV 135 (171)
Q Consensus 124 f~Cr-Cg~~FC~~ 135 (171)
|.|. ||..|-..
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 5666 77766543
No 96
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.79 E-value=27 Score=22.46 Aligned_cols=25 Identities=28% Similarity=0.639 Sum_probs=16.1
Q ss_pred CccccccccccccceeeecCccccC
Q 030802 110 KRCTTCNKRVGLTGFNCRCGNLFCA 134 (171)
Q Consensus 110 ~rC~~C~kkvgl~gf~CrCg~~FC~ 134 (171)
-+|..|++.|....|.=+=|..||.
T Consensus 37 F~C~~C~~~L~~~~~~~~~g~~yC~ 61 (76)
T 2cu8_A 37 LKCERCSKTLTPGGHAEHDGKPFCH 61 (76)
T ss_dssp CBCSSSCCBCCTTSCEEETTEEECT
T ss_pred CCCCCCCCccCCCceEeECCEEecc
Confidence 4567777777655566565666665
No 97
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.66 E-value=18 Score=22.86 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=16.9
Q ss_pred CccccccccccccceeeecCccccCCC
Q 030802 110 KRCTTCNKRVGLTGFNCRCGNLFCAVH 136 (171)
Q Consensus 110 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 136 (171)
-+|..|++.|....|.=+=|..||..|
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~c 60 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPC 60 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHH
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHH
Confidence 456777777766556655566666543
No 98
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.49 E-value=11 Score=24.76 Aligned_cols=24 Identities=21% Similarity=0.574 Sum_probs=10.7
Q ss_pred ccccccccccccceeeecCccccC
Q 030802 111 RCTTCNKRVGLTGFNCRCGNLFCA 134 (171)
Q Consensus 111 rC~~C~kkvgl~gf~CrCg~~FC~ 134 (171)
+|..|++.|....|.=+=|..||.
T Consensus 43 ~C~~C~~~L~~~~~~~~~g~~yC~ 66 (79)
T 1x62_A 43 VCTDCGTNLKQKGHFFVEDQIYCE 66 (79)
T ss_dssp SCSSSCCCHHHHCCEESSSCEECH
T ss_pred eeCCCCCCCCCCCeEeECCEEECH
Confidence 344555554433344444444443
No 99
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.48 E-value=18 Score=17.44 Aligned_cols=10 Identities=50% Similarity=1.424 Sum_probs=6.0
Q ss_pred eeee-cCcccc
Q 030802 124 FNCR-CGNLFC 133 (171)
Q Consensus 124 f~Cr-Cg~~FC 133 (171)
|.|. ||..|-
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 5666 666654
No 100
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.48 E-value=18 Score=17.79 Aligned_cols=10 Identities=20% Similarity=0.597 Sum_probs=6.0
Q ss_pred eeee-cCcccc
Q 030802 124 FNCR-CGNLFC 133 (171)
Q Consensus 124 f~Cr-Cg~~FC 133 (171)
|.|. ||..|-
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 5666 666553
No 101
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=26.47 E-value=18 Score=23.62 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=12.8
Q ss_pred ccccccccccccceeeecCccccCC
Q 030802 111 RCTTCNKRVGLTGFNCRCGNLFCAV 135 (171)
Q Consensus 111 rC~~C~kkvgl~gf~CrCg~~FC~~ 135 (171)
+|..|++.|....|.=+=|..||..
T Consensus 36 ~C~~C~~~L~~~~~~~~~~~~yC~~ 60 (81)
T 1a7i_A 36 LCMVCRKNLDSTTVAIHDAEVYCKS 60 (81)
T ss_dssp ECSSSCCEECSSCCEEETTEEECSH
T ss_pred ccCCCCCCCCCCCeEeeCCEEECHH
Confidence 4555666555444444444455543
No 102
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=26.40 E-value=17 Score=25.98 Aligned_cols=12 Identities=33% Similarity=0.852 Sum_probs=9.7
Q ss_pred ccceeeecCccc
Q 030802 121 LTGFNCRCGNLF 132 (171)
Q Consensus 121 l~gf~CrCg~~F 132 (171)
...+.||||..|
T Consensus 21 ~y~ypCrCGd~F 32 (89)
T 2jr7_A 21 TYFYPCPCGDNF 32 (89)
T ss_dssp EEEEECTTSSEE
T ss_pred EEEEcCCCCCEE
Confidence 345899999988
No 103
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=26.35 E-value=16 Score=27.43 Aligned_cols=32 Identities=22% Similarity=0.556 Sum_probs=23.2
Q ss_pred CCCCCCccccccc----cccccceeee-cCccccCCC
Q 030802 105 AKEGPKRCTTCNK----RVGLTGFNCR-CGNLFCAVH 136 (171)
Q Consensus 105 ~~~~~~rC~~C~k----kvgl~gf~Cr-Cg~~FC~~H 136 (171)
.+..+..|..|++ +++.--.+|+ ||++|-+-=
T Consensus 56 ~q~akytCPfCGk~~vKR~avGIW~C~~Cgk~fAGGA 92 (116)
T 3cc2_Z 56 EMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGS 92 (116)
T ss_dssp HHHSCEECSSSCCEEEEEEETTEEEETTTCCEEECCS
T ss_pred HhccCCcCCCCCCceeEecCceeEECCCCCCEEECCC
Confidence 3456789999998 3322248999 999998763
No 104
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.18 E-value=19 Score=23.95 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=9.9
Q ss_pred CCCcccccccccc
Q 030802 108 GPKRCTTCNKRVG 120 (171)
Q Consensus 108 ~~~rC~~C~kkvg 120 (171)
.+-.|..|+|...
T Consensus 23 ~~~~C~~C~k~f~ 35 (98)
T 2gqj_A 23 GEAVCPTCNVVTR 35 (98)
T ss_dssp SCCCCTTTCCCCS
T ss_pred CCcCCCCCCCChh
Confidence 4678888888776
No 105
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=26.14 E-value=60 Score=20.72 Aligned_cols=26 Identities=23% Similarity=0.594 Sum_probs=18.6
Q ss_pred CCccccccccccccceeee-cCccccCC
Q 030802 109 PKRCTTCNKRVGLTGFNCR-CGNLFCAV 135 (171)
Q Consensus 109 ~~rC~~C~kkvgl~gf~Cr-Cg~~FC~~ 135 (171)
...|..|...+. ....-. ||++||..
T Consensus 15 ~~~C~IC~~~~~-~p~~~~~CgH~fC~~ 41 (74)
T 2yur_A 15 ELLCLICKDIMT-DAVVIPCCGNSYCDE 41 (74)
T ss_dssp GGSCSSSCCCCT-TCEECSSSCCEECTT
T ss_pred CCCCcCCChHHh-CCeEcCCCCCHHHHH
Confidence 468999976543 345667 99999963
No 106
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.08 E-value=40 Score=20.65 Aligned_cols=26 Identities=23% Similarity=0.654 Sum_probs=17.6
Q ss_pred CCcccccccccccc------ceeeecCccccC
Q 030802 109 PKRCTTCNKRVGLT------GFNCRCGNLFCA 134 (171)
Q Consensus 109 ~~rC~~C~kkvgl~------gf~CrCg~~FC~ 134 (171)
...|..|...+... -..-.||++||.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~ 46 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCS 46 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEH
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcH
Confidence 46799998765432 145569999984
No 107
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.76 E-value=20 Score=24.03 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=6.8
Q ss_pred CCccccccccc
Q 030802 109 PKRCTTCNKRV 119 (171)
Q Consensus 109 ~~rC~~C~kkv 119 (171)
..+|..|++.|
T Consensus 25 ~~~C~~C~~~I 35 (90)
T 2dar_A 25 TPMCAHCNQVI 35 (90)
T ss_dssp CCBBSSSCCBC
T ss_pred CCCCccCCCEe
Confidence 35666666655
No 108
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.52 E-value=25 Score=17.99 Aligned_cols=11 Identities=36% Similarity=1.005 Sum_probs=5.7
Q ss_pred ceeee-cCcccc
Q 030802 123 GFNCR-CGNLFC 133 (171)
Q Consensus 123 gf~Cr-Cg~~FC 133 (171)
.|.|. ||..|-
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 2elx_A 7 GYVCALCLKKFV 18 (35)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCcchhC
Confidence 35555 555553
No 109
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.30 E-value=25 Score=23.77 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=7.3
Q ss_pred CCccccccccc
Q 030802 109 PKRCTTCNKRV 119 (171)
Q Consensus 109 ~~rC~~C~kkv 119 (171)
+-.|..|+|..
T Consensus 34 ~~~C~~C~k~F 44 (96)
T 2ctd_A 34 SVSCPTCQAVG 44 (96)
T ss_dssp CEECTTTCSCE
T ss_pred CcCCCCCCCCc
Confidence 45677777665
No 110
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.26 E-value=20 Score=22.59 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=14.6
Q ss_pred CccccccccccccceeeecCccccCC
Q 030802 110 KRCTTCNKRVGLTGFNCRCGNLFCAV 135 (171)
Q Consensus 110 ~rC~~C~kkvgl~gf~CrCg~~FC~~ 135 (171)
-+|..|++.|....|.=+=|..||..
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~ 57 (70)
T 2d8z_A 32 FVCTACRKQLSGQRFTARDDFAYCLN 57 (70)
T ss_dssp SBCSSSCCBCTTSCCEESSSSEECHH
T ss_pred CccCCCCCcCCcCceEeeCCeEECHH
Confidence 45667777665444554445555543
No 111
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.22 E-value=35 Score=20.76 Aligned_cols=12 Identities=25% Similarity=0.919 Sum_probs=8.1
Q ss_pred CCCccccccccc
Q 030802 108 GPKRCTTCNKRV 119 (171)
Q Consensus 108 ~~~rC~~C~kkv 119 (171)
.+-.|..|++..
T Consensus 8 ~~~~C~~C~k~f 19 (70)
T 1x5w_A 8 HPEKCSECSYSC 19 (70)
T ss_dssp CSEECSSSSCEE
T ss_pred CCeECCCCCccc
Confidence 356788887754
No 112
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.22 E-value=20 Score=23.30 Aligned_cols=27 Identities=19% Similarity=0.615 Sum_probs=18.0
Q ss_pred CccccccccccccceeeecCccccCCC
Q 030802 110 KRCTTCNKRVGLTGFNCRCGNLFCAVH 136 (171)
Q Consensus 110 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 136 (171)
-+|..|++.|....|.=+=|..||..|
T Consensus 44 F~C~~C~~~L~~~~~~~~~~~~yC~~c 70 (82)
T 1x63_A 44 FTCSNCKQVIGTGSFFPKGEDFYCVTC 70 (82)
T ss_dssp CCCSSSCCCCTTSCEEEETTEEEEHHH
T ss_pred CchhhCCCccCCCccEeeCCEEECHHH
Confidence 467788887766666666666676544
No 113
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=24.76 E-value=18 Score=17.52 Aligned_cols=10 Identities=20% Similarity=0.730 Sum_probs=5.2
Q ss_pred eeee-cCcccc
Q 030802 124 FNCR-CGNLFC 133 (171)
Q Consensus 124 f~Cr-Cg~~FC 133 (171)
|.|. ||..|-
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1klr_A 3 YQCQYCEFRSA 13 (30)
T ss_dssp CCCSSSSCCCS
T ss_pred ccCCCCCCccC
Confidence 4555 555553
No 114
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.62 E-value=33 Score=24.09 Aligned_cols=26 Identities=23% Similarity=0.613 Sum_probs=17.0
Q ss_pred CCccccccccccccceee-ecCccccCC
Q 030802 109 PKRCTTCNKRVGLTGFNC-RCGNLFCAV 135 (171)
Q Consensus 109 ~~rC~~C~kkvgl~gf~C-rCg~~FC~~ 135 (171)
.-.|..|..-+.- ...- .||++||..
T Consensus 22 ~~~C~IC~~~~~~-pv~~~~CgH~fC~~ 48 (117)
T 1jm7_B 22 LLRCSRCTNILRE-PVCLGGCEHIFCSN 48 (117)
T ss_dssp TTSCSSSCSCCSS-CBCCCSSSCCBCTT
T ss_pred CCCCCCCChHhhC-ccEeCCCCCHHHHH
Confidence 4578888754432 3343 799999854
No 115
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.58 E-value=26 Score=18.32 Aligned_cols=10 Identities=30% Similarity=1.112 Sum_probs=5.2
Q ss_pred ceeee-cCccc
Q 030802 123 GFNCR-CGNLF 132 (171)
Q Consensus 123 gf~Cr-Cg~~F 132 (171)
.|.|. ||..|
T Consensus 9 ~~~C~~C~k~f 19 (37)
T 2elo_A 9 SYSCPVCEKSF 19 (37)
T ss_dssp CCEETTTTEEC
T ss_pred CcCCCCCCCcc
Confidence 35555 55554
No 116
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.57 E-value=68 Score=20.65 Aligned_cols=25 Identities=28% Similarity=0.736 Sum_probs=17.7
Q ss_pred CCccccccccccccceeeecCccccC
Q 030802 109 PKRCTTCNKRVGLTGFNCRCGNLFCA 134 (171)
Q Consensus 109 ~~rC~~C~kkvgl~gf~CrCg~~FC~ 134 (171)
...|..|...+.- ...-.||++||.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~CgH~fC~ 39 (81)
T 2csy_A 15 PFRCFICRQAFQN-PVVTKCRHYFCE 39 (81)
T ss_dssp CSBCSSSCSBCCS-EEECTTSCEEEH
T ss_pred CCCCcCCCchhcC-eeEccCCCHhHH
Confidence 4679999776533 345579999985
No 117
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=24.52 E-value=24 Score=23.66 Aligned_cols=25 Identities=28% Similarity=0.821 Sum_probs=18.0
Q ss_pred Ccccccccccccc---ceeeecCccccC
Q 030802 110 KRCTTCNKRVGLT---GFNCRCGNLFCA 134 (171)
Q Consensus 110 ~rC~~C~kkvgl~---gf~CrCg~~FC~ 134 (171)
..|..|--.+.+. -+-|.||+.||.
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~ 39 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICR 39 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCH
T ss_pred CcCCccCccCccccccccccCCCCCcCH
Confidence 4688888766443 355889999995
No 118
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=24.51 E-value=19 Score=17.67 Aligned_cols=11 Identities=27% Similarity=0.975 Sum_probs=6.5
Q ss_pred eeee-cCccccC
Q 030802 124 FNCR-CGNLFCA 134 (171)
Q Consensus 124 f~Cr-Cg~~FC~ 134 (171)
|.|. ||..|-.
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 5565 6666643
No 119
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.40 E-value=19 Score=17.26 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=6.5
Q ss_pred eeee-cCccccC
Q 030802 124 FNCR-CGNLFCA 134 (171)
Q Consensus 124 f~Cr-Cg~~FC~ 134 (171)
|.|. ||..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 5565 6666653
No 120
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=24.32 E-value=27 Score=17.99 Aligned_cols=11 Identities=45% Similarity=0.990 Sum_probs=5.8
Q ss_pred ceeee-cCcccc
Q 030802 123 GFNCR-CGNLFC 133 (171)
Q Consensus 123 gf~Cr-Cg~~FC 133 (171)
.|.|. ||..|-
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 1srk_A 7 PFVCRICLSAFT 18 (35)
T ss_dssp CEECSSSCCEES
T ss_pred CeeCCCCCcccC
Confidence 35555 555553
No 121
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=23.94 E-value=28 Score=18.18 Aligned_cols=8 Identities=25% Similarity=1.090 Sum_probs=3.4
Q ss_pred Cccccccc
Q 030802 110 KRCTTCNK 117 (171)
Q Consensus 110 ~rC~~C~k 117 (171)
-+|..|+|
T Consensus 12 ~~C~~C~k 19 (37)
T 1p7a_A 12 FQCPDCDR 19 (37)
T ss_dssp BCCTTTCC
T ss_pred ccCCCCCc
Confidence 34444443
No 122
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=23.67 E-value=23 Score=17.15 Aligned_cols=11 Identities=36% Similarity=0.947 Sum_probs=6.5
Q ss_pred eeee-cCccccC
Q 030802 124 FNCR-CGNLFCA 134 (171)
Q Consensus 124 f~Cr-Cg~~FC~ 134 (171)
|.|. ||..|-.
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 5565 6666643
No 123
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.49 E-value=60 Score=20.48 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=17.5
Q ss_pred CCccccccccccccceee-ecCccccC
Q 030802 109 PKRCTTCNKRVGLTGFNC-RCGNLFCA 134 (171)
Q Consensus 109 ~~rC~~C~kkvgl~gf~C-rCg~~FC~ 134 (171)
...|..|...+.- ...- .||++||.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~ 40 (72)
T 2djb_A 15 YILCSICKGYLID-ATTITECLHTFCK 40 (72)
T ss_dssp GGSCTTTSSCCSS-CEECSSSCCEECH
T ss_pred CCCCCCCChHHHC-cCEECCCCCHHHH
Confidence 4679999765533 3444 79999986
No 124
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.22 E-value=20 Score=24.13 Aligned_cols=24 Identities=29% Similarity=0.915 Sum_probs=10.8
Q ss_pred ccccccccccccceeeecCccccC
Q 030802 111 RCTTCNKRVGLTGFNCRCGNLFCA 134 (171)
Q Consensus 111 rC~~C~kkvgl~gf~CrCg~~FC~ 134 (171)
+|..|++.|....|.=+=|..||.
T Consensus 44 ~C~~C~~~L~~~~~~~~~g~~yC~ 67 (91)
T 2d8y_A 44 RCSYCNNKLSLGTYASLHGRIYCK 67 (91)
T ss_dssp BCTTTCCBCCTTTCCCSSSCCCCH
T ss_pred eeCCCCCCCCCCCcEeECCEEECH
Confidence 444555555443343333444443
No 125
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=23.18 E-value=21 Score=25.12 Aligned_cols=13 Identities=31% Similarity=0.800 Sum_probs=10.1
Q ss_pred ccceeeecCcccc
Q 030802 121 LTGFNCRCGNLFC 133 (171)
Q Consensus 121 l~gf~CrCg~~FC 133 (171)
..-+.||||..|-
T Consensus 28 ~y~y~CrCGd~F~ 40 (83)
T 1wge_A 28 TYFYPCPCGDNFA 40 (83)
T ss_dssp EEEECCSSSSCEE
T ss_pred EEEEeCCCCCEEE
Confidence 3458999999883
No 126
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.17 E-value=1.1e+02 Score=19.27 Aligned_cols=25 Identities=20% Similarity=0.567 Sum_probs=17.7
Q ss_pred CCccccccccccccceeeecCccccC
Q 030802 109 PKRCTTCNKRVGLTGFNCRCGNLFCA 134 (171)
Q Consensus 109 ~~rC~~C~kkvgl~gf~CrCg~~FC~ 134 (171)
...|..|...+.- ...-.||++||.
T Consensus 19 ~~~C~IC~~~~~~-p~~~~CgH~fC~ 43 (85)
T 2ecw_A 19 EVTCPICLELLKE-PVSADCNHSFCR 43 (85)
T ss_dssp TTSCTTTCSCCSS-CEECTTSCCBCH
T ss_pred CCCCcCCChhhCc-ceeCCCCCHHHH
Confidence 4679999766432 345679999985
No 127
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=23.03 E-value=49 Score=23.73 Aligned_cols=25 Identities=28% Similarity=0.752 Sum_probs=17.4
Q ss_pred CCCccccccccccccceeee-cCccc
Q 030802 108 GPKRCTTCNKRVGLTGFNCR-CGNLF 132 (171)
Q Consensus 108 ~~~rC~~C~kkvgl~gf~Cr-Cg~~F 132 (171)
....|..|.--..-.-|.|| |+.+|
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rvf 39 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVF 39 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCC
T ss_pred CCcccCccccccccceeccccccccc
Confidence 44578888754433458899 88887
No 128
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.53 E-value=18 Score=17.76 Aligned_cols=11 Identities=36% Similarity=1.011 Sum_probs=7.2
Q ss_pred eeee-cCccccC
Q 030802 124 FNCR-CGNLFCA 134 (171)
Q Consensus 124 f~Cr-Cg~~FC~ 134 (171)
|.|. ||..|-.
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 5666 7777754
No 129
>1e0f_I Haemadin, factor IIA; coagulation//heparin-B, coagulation/crystal structure/heparin-binding site/ hirudin/thrombin inhibitor; 3.1A {Haemadipsa sylvestris} SCOP: g.3.15.2
Probab=22.79 E-value=44 Score=21.58 Aligned_cols=30 Identities=27% Similarity=0.710 Sum_probs=21.0
Q ss_pred cccceeeecCccccCCCCCCCCCCCCccch
Q 030802 120 GLTGFNCRCGNLFCAVHRYSDKHGCPFDYR 149 (171)
Q Consensus 120 gl~gf~CrCg~~FC~~HRy~e~H~C~fDyk 149 (171)
|-.||.|.||...|---.--....|+-|-|
T Consensus 13 gevgytcdcgekiclygqscndgqcsgdpk 42 (57)
T 1e0f_I 13 GEVGYTCDCGEKICLYGQSCNDGQCSGDPK 42 (57)
T ss_dssp SSCSSCEECSSSEECTTCCBSSSCBCSCCC
T ss_pred CceeeeccCCceeeEecccccCCcccCCCC
Confidence 345788999888887665556667776644
No 130
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=22.20 E-value=32 Score=22.05 Aligned_cols=21 Identities=38% Similarity=0.830 Sum_probs=11.2
Q ss_pred Ccccccccccccc------ceee-ecCc
Q 030802 110 KRCTTCNKRVGLT------GFNC-RCGN 130 (171)
Q Consensus 110 ~rC~~C~kkvgl~------gf~C-rCg~ 130 (171)
-+|..|++.+... |.+| -||+
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred EEeeccCCCccHHHHhhCCCcccCccCc
Confidence 3566666655542 5666 3554
No 131
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=21.93 E-value=33 Score=23.79 Aligned_cols=25 Identities=16% Similarity=0.445 Sum_probs=17.2
Q ss_pred CCccccccccccccceeeecCccccC
Q 030802 109 PKRCTTCNKRVGLTGFNCRCGNLFCA 134 (171)
Q Consensus 109 ~~rC~~C~kkvgl~gf~CrCg~~FC~ 134 (171)
.-.|..|...+.- ...-.||++||.
T Consensus 15 ~~~C~iC~~~~~~-p~~~~CgH~fC~ 39 (115)
T 3l11_A 15 ECQCGICMEILVE-PVTLPCNHTLCK 39 (115)
T ss_dssp HHBCTTTCSBCSS-CEECTTSCEECH
T ss_pred CCCCccCCcccCc-eeEcCCCCHHhH
Confidence 3579999865532 333479999995
No 132
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.83 E-value=36 Score=17.47 Aligned_cols=9 Identities=22% Similarity=0.851 Sum_probs=4.4
Q ss_pred eeee-cCccc
Q 030802 124 FNCR-CGNLF 132 (171)
Q Consensus 124 f~Cr-Cg~~F 132 (171)
|.|. ||..|
T Consensus 10 ~~C~~C~k~f 19 (36)
T 2elt_A 10 YKCPQCSYAS 19 (36)
T ss_dssp EECSSSSCEE
T ss_pred CCCCCCCccc
Confidence 5554 44444
No 133
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.68 E-value=63 Score=19.96 Aligned_cols=26 Identities=23% Similarity=0.617 Sum_probs=17.9
Q ss_pred CCccccccccccccceeeecCccccCC
Q 030802 109 PKRCTTCNKRVGLTGFNCRCGNLFCAV 135 (171)
Q Consensus 109 ~~rC~~C~kkvgl~gf~CrCg~~FC~~ 135 (171)
...|..|...+.. ...-.||++||..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~CgH~fC~~ 40 (66)
T 2ecy_A 15 KYKCEKCHLVLCS-PKQTECGHRFCES 40 (66)
T ss_dssp CEECTTTCCEESS-CCCCSSSCCCCHH
T ss_pred CCCCCCCChHhcC-eeECCCCCHHHHH
Confidence 4679999765532 3445899999963
No 134
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.62 E-value=37 Score=17.71 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=6.3
Q ss_pred ceeee-cCcccc
Q 030802 123 GFNCR-CGNLFC 133 (171)
Q Consensus 123 gf~Cr-Cg~~FC 133 (171)
.|.|. ||..|-
T Consensus 9 ~~~C~~C~k~f~ 20 (37)
T 2elp_A 9 AMKCPYCDFYFM 20 (37)
T ss_dssp CEECSSSSCEEC
T ss_pred CeECCCCChhhc
Confidence 46665 666554
No 135
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=21.62 E-value=26 Score=23.75 Aligned_cols=23 Identities=26% Similarity=0.866 Sum_probs=17.7
Q ss_pred CCCcccccccccccc---ceeee-cCc
Q 030802 108 GPKRCTTCNKRVGLT---GFNCR-CGN 130 (171)
Q Consensus 108 ~~~rC~~C~kkvgl~---gf~Cr-Cg~ 130 (171)
-...|..|+..+.+. ...|+ ||+
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCC
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCc
Confidence 457899999997774 47887 766
No 136
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.24 E-value=25 Score=22.60 Aligned_cols=27 Identities=15% Similarity=0.433 Sum_probs=15.9
Q ss_pred CccccccccccccceeeecCccccCCC
Q 030802 110 KRCTTCNKRVGLTGFNCRCGNLFCAVH 136 (171)
Q Consensus 110 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 136 (171)
-+|..|++.|.-..|.=+=|..||..|
T Consensus 47 F~C~~C~~~L~~~~f~~~~~~~yC~~c 73 (77)
T 2egq_A 47 FHCKKCSVNLANKRFVFHQEQVYCPDC 73 (77)
T ss_dssp CBCSSSCCBCTTSCCCEETTEECCHHH
T ss_pred CEehhcCCCCCCCccEeECCEEEChHH
Confidence 456677777654455555556666443
No 137
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.89 E-value=34 Score=17.72 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=5.8
Q ss_pred ceeee-cCcccc
Q 030802 123 GFNCR-CGNLFC 133 (171)
Q Consensus 123 gf~Cr-Cg~~FC 133 (171)
.|.|. ||..|-
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elv_A 9 LYDCHICERKFK 20 (36)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCCCCCccC
Confidence 35555 555553
No 138
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=20.73 E-value=42 Score=21.47 Aligned_cols=25 Identities=24% Similarity=0.623 Sum_probs=18.6
Q ss_pred CccccccccccccceeeecCccccC
Q 030802 110 KRCTTCNKRVGLTGFNCRCGNLFCA 134 (171)
Q Consensus 110 ~rC~~C~kkvgl~gf~CrCg~~FC~ 134 (171)
-+|..|++.|....|.=+=|..||.
T Consensus 28 F~C~~C~~~L~~~~~~~~~g~~yC~ 52 (76)
T 1iml_A 28 LKCEKCGKTLTSGGHAEHEGKPYCN 52 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEET
T ss_pred CCccccCccCCCCceECcCCeEeeC
Confidence 4677888888776676677777776
No 139
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.59 E-value=28 Score=18.10 Aligned_cols=12 Identities=33% Similarity=0.869 Sum_probs=7.0
Q ss_pred ceeee-cCccccC
Q 030802 123 GFNCR-CGNLFCA 134 (171)
Q Consensus 123 gf~Cr-Cg~~FC~ 134 (171)
.|.|. ||..|-.
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2els_A 9 IFTCEYCNKVFKF 21 (36)
T ss_dssp CEECTTTCCEESS
T ss_pred CEECCCCCceeCC
Confidence 36665 6666643
No 140
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.28 E-value=29 Score=22.41 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=16.9
Q ss_pred CccccccccccccceeeecCccccCCC
Q 030802 110 KRCTTCNKRVGLTGFNCRCGNLFCAVH 136 (171)
Q Consensus 110 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 136 (171)
-+|..|++.|....|.=+=|..||..|
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~~ 68 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFELDGRPFCELH 68 (80)
T ss_dssp CBCSSSCCBSCSSCCEESSSCEECHHH
T ss_pred CChhhCCCCCCCCcEEeECCEEECHHH
Confidence 467778877765555555566666544
Done!