Query 030803
Match_columns 171
No_of_seqs 175 out of 496
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 07:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 47.1 31 0.0011 24.5 4.8 36 126-163 5-40 (89)
2 3brc_A Conserved protein of un 33.5 11 0.00037 30.0 0.5 9 10-18 102-110 (156)
3 2kmt_A CCDB; toxin; NMR {Vibri 17.0 67 0.0023 23.2 2.0 20 144-165 86-105 (105)
4 1mn8_A Core protein P15; helic 13.7 60 0.002 24.0 1.0 16 92-107 48-63 (100)
5 1v5t_A 8430435I17RIK protein; 12.7 3.1E+02 0.01 18.1 4.4 35 127-163 7-42 (90)
6 1uhu_A Product of riken cDNA 3 12.6 69 0.0024 23.9 1.0 15 93-107 49-63 (105)
7 1xg0_B Phycoerythrin alpha-2 c 12.5 77 0.0026 21.9 1.2 14 126-139 36-49 (67)
8 1xg0_A Phycoerythrin alpha-3 c 11.6 85 0.0029 22.1 1.2 14 126-139 36-49 (76)
9 2fft_A Thylakoid soluble phosp 9.9 64 0.0022 23.1 0.1 14 135-148 31-44 (84)
10 1gmi_A Protein kinase C, epsil 9.0 1.8E+02 0.0062 20.1 2.2 17 126-142 38-54 (136)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=47.08 E-value=31 Score=24.55 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=28.6
Q ss_pred CcceEEEeecCcccceeeccccccCHHHHHHHHHHhhc
Q 030803 126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFS 163 (171)
Q Consensus 126 ~~~yVKVsMDG~pigRKVDL~~y~sY~~L~~~Le~MF~ 163 (171)
+.+=|||+..|--+.=.|+. .-+|++|...|.++|.
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~ 40 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCS 40 (89)
T ss_dssp SCEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTT
T ss_pred CeEEEEEEeCCeEEEEECCC--CCCHHHHHHHHHHHhC
Confidence 45789999999744444444 5699999999999998
No 2
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=33.48 E-value=11 Score=29.97 Aligned_cols=9 Identities=56% Similarity=1.202 Sum_probs=7.7
Q ss_pred ccCCCCCCC
Q 030803 10 RLGLPGGNG 18 (171)
Q Consensus 10 RLGLPG~~~ 18 (171)
|||.||+++
T Consensus 102 RLGvPGSGS 110 (156)
T 3brc_A 102 RLGVPGSGS 110 (156)
T ss_dssp ECSSTTSCE
T ss_pred cccCCCCcc
Confidence 999999863
No 3
>2kmt_A CCDB; toxin; NMR {Vibrio fischeri} PDB: 3jrz_A 3jsc_A 3ku8_C* 3kua_C*
Probab=17.02 E-value=67 Score=23.20 Aligned_cols=20 Identities=15% Similarity=0.451 Sum_probs=17.1
Q ss_pred ccccccCHHHHHHHHHHhhccc
Q 030803 144 DLKLYKSYQELSDALGKMFSSF 165 (171)
Q Consensus 144 DL~~y~sY~~L~~~Le~MF~~f 165 (171)
||..+. +++..||+.||.+|
T Consensus 86 ~L~~~~--~~I~~AlD~L~~G~ 105 (105)
T 2kmt_A 86 ELSTFR--NEIIAAIDFLITGI 105 (105)
T ss_dssp CCSTTH--HHHHHHHHHHTTCC
T ss_pred CHhHhH--HHHHHHHHHHHhcC
Confidence 677777 99999999999874
No 4
>1mn8_A Core protein P15; helical bundle, viral protein; 1.00A {Moloney murine leukemia virus} SCOP: a.61.1.6
Probab=13.73 E-value=60 Score=23.99 Aligned_cols=16 Identities=31% Similarity=0.924 Sum_probs=12.6
Q ss_pred CCCCCccchhhhhhhh
Q 030803 92 VVGWPPVRSFRKNIMA 107 (171)
Q Consensus 92 vVGWPPVrs~RkN~~~ 107 (171)
-|||||=.+|-.+++.
T Consensus 48 ~vGWP~eGTfn~~~I~ 63 (100)
T 1mn8_A 48 NVGWPRDGTFNRDLIT 63 (100)
T ss_dssp CSSCCTTCCCCHHHHH
T ss_pred CCCCCCCCcccHHHHH
Confidence 3899999999776653
No 5
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=12.66 E-value=3.1e+02 Score=18.14 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=28.0
Q ss_pred cceEEEeecCcccceee-ccccccCHHHHHHHHHHhhc
Q 030803 127 VAFVKVSMDGAPYLRKV-DLKLYKSYQELSDALGKMFS 163 (171)
Q Consensus 127 ~~yVKVsMDG~pigRKV-DL~~y~sY~~L~~~Le~MF~ 163 (171)
.|-|+|...|-.| .| ++..-..-.+|-..|++.++
T Consensus 7 ~m~i~Vk~~g~~~--~i~~v~~~~TV~~lK~~I~~~~g 42 (90)
T 1v5t_A 7 GLPIIVKWGGQEY--SVTTLSEDDTVLDLKQFLKTLTG 42 (90)
T ss_dssp SCCEEEEETTEEE--EECSCCSSSBHHHHHHHHHHHTC
T ss_pred eEEEEEEECCEEE--EEEEeCCCCCHHHHHHHHHHHHC
Confidence 4666677788776 47 88888999999999998876
No 6
>1uhu_A Product of riken cDNA 3110009E22; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.61.1.6
Probab=12.56 E-value=69 Score=23.86 Aligned_cols=15 Identities=40% Similarity=1.030 Sum_probs=12.4
Q ss_pred CCCCccchhhhhhhh
Q 030803 93 VGWPPVRSFRKNIMA 107 (171)
Q Consensus 93 VGWPPVrs~RkN~~~ 107 (171)
|||||=.+|-.+++.
T Consensus 49 vGWP~EGTfn~~iI~ 63 (105)
T 1uhu_A 49 VGWPPEGTFDLTVIF 63 (105)
T ss_dssp SSCCSSCCCCHHHHH
T ss_pred CCCCCCCcccHHHHH
Confidence 899999999776653
No 7
>1xg0_B Phycoerythrin alpha-2 chain; light-harvesting protein, cryptophyte, photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP} SCOP: d.184.1.1 PDB: 1qgw_B* 1xf6_B*
Probab=12.50 E-value=77 Score=21.85 Aligned_cols=14 Identities=14% Similarity=0.010 Sum_probs=11.2
Q ss_pred CcceEEEeecCccc
Q 030803 126 NVAFVKVSMDGAPY 139 (171)
Q Consensus 126 ~~~yVKVsMDG~pi 139 (171)
.-|+|||.|-.+++
T Consensus 36 DeM~VKV~~~ki~v 49 (67)
T 1xg0_B 36 DEMMVKAQSVKIEV 49 (67)
T ss_dssp GGEEEEEEEEECCC
T ss_pred chhheeeeeccccc
Confidence 36999999988754
No 8
>1xg0_A Phycoerythrin alpha-3 chain; light-harvesting protein, cryptophyte, photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP} SCOP: d.184.1.1 PDB: 1qgw_A* 1xf6_A*
Probab=11.58 E-value=85 Score=22.13 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=11.2
Q ss_pred CcceEEEeecCccc
Q 030803 126 NVAFVKVSMDGAPY 139 (171)
Q Consensus 126 ~~~yVKVsMDG~pi 139 (171)
.-|+|||.|-.+++
T Consensus 36 DeM~VKV~~~ki~v 49 (76)
T 1xg0_A 36 DEMMVKVASTKVTV 49 (76)
T ss_dssp GGEEEEEEEEECCC
T ss_pred chhheeeeeccccc
Confidence 36999999988743
No 9
>2fft_A Thylakoid soluble phosphoprotein; TSP9, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Spinacia oleracea} SCOP: g.88.1.1
Probab=9.89 E-value=64 Score=23.13 Aligned_cols=14 Identities=36% Similarity=0.434 Sum_probs=10.4
Q ss_pred cCcccceeeccccc
Q 030803 135 DGAPYLRKVDLKLY 148 (171)
Q Consensus 135 DG~pigRKVDL~~y 148 (171)
+=-|||||||-+.-
T Consensus 31 ETDPiL~Kv~~k~~ 44 (84)
T 2fft_A 31 ETDPILRGGDVKSS 44 (84)
T ss_dssp CSCCSSSCSCCCCC
T ss_pred ecchhhhccccCCC
Confidence 44699999986654
No 10
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=9.00 E-value=1.8e+02 Score=20.14 Aligned_cols=17 Identities=6% Similarity=0.159 Sum_probs=13.1
Q ss_pred CcceEEEeecCccccee
Q 030803 126 NVAFVKVSMDGAPYLRK 142 (171)
Q Consensus 126 ~~~yVKVsMDG~pigRK 142 (171)
.-.||||.+++..+.|.
T Consensus 38 ~DPyv~v~l~~~~~~~T 54 (136)
T 1gmi_A 38 LDPYIALNVDDSRIGQT 54 (136)
T ss_dssp CCEEEEEEETTEEEEEC
T ss_pred cCcEEEEEECCeEeeee
Confidence 35799999999876553
Done!