Query 030803
Match_columns 171
No_of_seqs 175 out of 496
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 07:12:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030803.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030803hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ip9a_ d.15.2.2 (A:) Bud emer 43.2 23 0.0017 22.8 5.2 38 124-163 9-46 (85)
2 d2bkfa1 d.15.2.2 (A:1-85) Next 34.2 22 0.0016 23.7 3.9 36 128-163 5-40 (85)
3 d2esna1 a.4.5.37 (A:3-91) Prob 21.1 9.7 0.00071 24.5 0.1 18 138-155 1-18 (89)
4 d2dj7a1 g.39.1.3 (A:44-74) Act 18.2 17 0.0012 20.3 0.6 10 132-141 14-23 (31)
5 d1qasa2 b.7.1.1 (A:626-756) PI 17.7 27 0.002 23.1 1.8 14 126-139 27-40 (131)
6 d2zkmx2 b.7.1.1 (X:678-799) Ph 17.6 24 0.0018 23.6 1.5 13 127-139 19-31 (122)
7 d1beda_ c.47.1.13 (A:) Disulfi 13.9 59 0.0043 21.4 2.8 31 125-162 148-178 (181)
8 d1vdca2 c.3.1.5 (A:118-243) Th 13.7 25 0.0018 24.1 0.7 9 10-18 1-9 (130)
9 d2ct1a1 g.37.1.1 (A:44-71) Tra 11.2 12 0.00089 20.3 -1.3 12 137-148 10-21 (28)
10 d1xg0b_ d.184.1.1 (B:) Phycoer 10.1 49 0.0035 21.2 1.2 14 126-139 36-49 (67)
No 1
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.17 E-value=23 Score=22.79 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=30.7
Q ss_pred CCCcceEEEeecCcccceeeccccccCHHHHHHHHHHhhc
Q 030803 124 SSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFS 163 (171)
Q Consensus 124 ~~~~~yVKVsMDG~pigRKVDL~~y~sY~~L~~~Le~MF~ 163 (171)
+.+++=|||+.++--+.=+|. .--+|.+|...+.+.|+
T Consensus 9 ~~~~ikVKv~~~~D~~~~~l~--~~it~~dL~~kI~~rf~ 46 (85)
T d1ip9a_ 9 GLKTTKIKFYYKDDIFALMLK--GDTTYKELRSKIAPRID 46 (85)
T ss_dssp CCCCEEEEECBTTCCEEEEEC--SCCCHHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCcEEEEEeC--CCCCHHHHHHHHHHHhC
Confidence 456789999999986655654 44689999999999996
No 2
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.21 E-value=22 Score=23.66 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=30.1
Q ss_pred ceEEEeecCcccceeeccccccCHHHHHHHHHHhhc
Q 030803 128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFS 163 (171)
Q Consensus 128 ~yVKVsMDG~pigRKVDL~~y~sY~~L~~~Le~MF~ 163 (171)
.=|||+..|-.+==+|=.....+|.+|...|...|.
T Consensus 5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~ 40 (85)
T d2bkfa1 5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD 40 (85)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHT
T ss_pred EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcC
Confidence 569999988765546766778899999999999998
No 3
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.14 E-value=9.7 Score=24.51 Aligned_cols=18 Identities=39% Similarity=0.728 Sum_probs=12.8
Q ss_pred ccceeeccccccCHHHHH
Q 030803 138 PYLRKVDLKLYKSYQELS 155 (171)
Q Consensus 138 pigRKVDL~~y~sY~~L~ 155 (171)
|.+|+|||+.+..+..+.
T Consensus 1 p~l~~ldl~~L~~f~~v~ 18 (89)
T d2esna1 1 PLLRRLDLNLLLVFDALY 18 (89)
T ss_dssp CCTTTSCTTHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHH
Confidence 778999998766555443
No 4
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.18 E-value=17 Score=20.28 Aligned_cols=10 Identities=50% Similarity=0.986 Sum_probs=8.0
Q ss_pred EeecCcccce
Q 030803 132 VSMDGAPYLR 141 (171)
Q Consensus 132 VsMDG~pigR 141 (171)
++.||+||--
T Consensus 14 m~kdG~PyCe 23 (31)
T d2dj7a1 14 ISKDGVPYCE 23 (31)
T ss_dssp EEETTEEECT
T ss_pred ecCCCCcccH
Confidence 5789999964
No 5
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.70 E-value=27 Score=23.06 Aligned_cols=14 Identities=21% Similarity=0.074 Sum_probs=11.1
Q ss_pred CcceEEEeecCccc
Q 030803 126 NVAFVKVSMDGAPY 139 (171)
Q Consensus 126 ~~~yVKVsMDG~pi 139 (171)
...||||+|.|.+.
T Consensus 27 ~DPyV~v~l~g~~~ 40 (131)
T d1qasa2 27 VDPKVIVEIHGVGR 40 (131)
T ss_dssp CCEEEEEEEESSTT
T ss_pred cCeEEEEEEccCCC
Confidence 35799999988764
No 6
>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.55 E-value=24 Score=23.59 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=10.7
Q ss_pred cceEEEeecCccc
Q 030803 127 VAFVKVSMDGAPY 139 (171)
Q Consensus 127 ~~yVKVsMDG~pi 139 (171)
.-||||.|-|.|-
T Consensus 19 dPyV~V~l~g~~~ 31 (122)
T d2zkmx2 19 RTYVEVELFGLPG 31 (122)
T ss_dssp CEEEEEEEECCTT
T ss_pred CcEEEEEEECcCC
Confidence 4799999988763
No 7
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}
Probab=13.94 E-value=59 Score=21.41 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=22.9
Q ss_pred CCcceEEEeecCcccceeeccccccCHHHHHHHHHHhh
Q 030803 125 SNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMF 162 (171)
Q Consensus 125 ~~~~yVKVsMDG~pigRKVDL~~y~sY~~L~~~Le~MF 162 (171)
..+++| +|- ..|+...+.+|++|++.++.|-
T Consensus 148 TPt~~I----nGk---~~v~~~~~~~~~~l~~~i~~L~ 178 (181)
T d1beda_ 148 VPAVVV----NNR---YLVQGQSVKSLDEYFDLVNYLL 178 (181)
T ss_dssp SSEEEE----TTT---EEECGGGCCSHHHHHHHHHHHH
T ss_pred ccEEEE----CCE---EeeCCCCCCCHHHHHHHHHHHH
Confidence 345554 564 2679999999999999888663
No 8
>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=13.71 E-value=25 Score=24.07 Aligned_cols=9 Identities=33% Similarity=0.590 Sum_probs=7.7
Q ss_pred ccCCCCCCC
Q 030803 10 RLGLPGGNG 18 (171)
Q Consensus 10 RLGLPG~~~ 18 (171)
|||+||..+
T Consensus 1 ~l~~pGe~E 9 (130)
T d1vdca2 1 RLSFVGSGE 9 (130)
T ss_dssp CCCCBTCSS
T ss_pred CCCCCcccc
Confidence 899999765
No 9
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.19 E-value=12 Score=20.27 Aligned_cols=12 Identities=33% Similarity=0.307 Sum_probs=9.3
Q ss_pred cccceeeccccc
Q 030803 137 APYLRKVDLKLY 148 (171)
Q Consensus 137 ~pigRKVDL~~y 148 (171)
.-|.||-||..|
T Consensus 10 tiiarksdlrvh 21 (28)
T d2ct1a1 10 TVIARKSDLGVH 21 (28)
T ss_dssp CEESSHHHHHHH
T ss_pred hheeehhhhhHH
Confidence 348899998765
No 10
>d1xg0b_ d.184.1.1 (B:) Phycoerythrin 545 alpha-subunits {Cryptophyte (Rhodomonas sp. CS24) [TaxId: 79257]}
Probab=10.09 E-value=49 Score=21.18 Aligned_cols=14 Identities=14% Similarity=0.010 Sum_probs=11.3
Q ss_pred CcceEEEeecCccc
Q 030803 126 NVAFVKVSMDGAPY 139 (171)
Q Consensus 126 ~~~yVKVsMDG~pi 139 (171)
.-|+|||.|-.+++
T Consensus 36 Dem~VKV~~~ki~v 49 (67)
T d1xg0b_ 36 DEMMVKAQSVKIEV 49 (67)
T ss_dssp GGEEEEEEEEECCC
T ss_pred hhhhhheeeeeecc
Confidence 36999999987764
Done!