Your job contains 1 sequence.
>030804
MAAGASSVWMLNQSSFLGSCQQLSSVSKLVASRRPRPAPPSLFIVEASTRPRTKREDRTA
RHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGP
TIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030804
(171 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2007690 - symbol:EMB3105 "EMBRYO DEFECTIVE 310... 577 5.3e-56 1
TIGR_CMR|CHY_2293 - symbol:CHY_2293 "ribosomal protein L1... 333 3.8e-30 1
TIGR_CMR|BA_0126 - symbol:BA_0126 "ribosomal protein L18"... 330 7.9e-30 1
TIGR_CMR|GSU_2841 - symbol:GSU_2841 "ribosomal protein L1... 318 1.5e-28 1
TIGR_CMR|DET_0490 - symbol:DET_0490 "ribosomal protein L1... 303 5.7e-27 1
UNIPROTKB|P66076 - symbol:rplR "50S ribosomal protein L18... 261 1.6e-22 1
TIGR_CMR|SO_0247 - symbol:SO_0247 "ribosomal protein L18"... 257 4.3e-22 1
UNIPROTKB|Q9KP00 - symbol:rplR "50S ribosomal protein L18... 252 1.5e-21 1
TIGR_CMR|CPS_0617 - symbol:CPS_0617 "ribosomal protein L1... 252 1.5e-21 1
TIGR_CMR|VC_2580 - symbol:VC_2580 "ribosomal protein L18"... 252 1.5e-21 1
UNIPROTKB|P0C018 - symbol:rplR "50S ribosomal subunit pro... 250 2.4e-21 1
TIGR_CMR|CBU_0254 - symbol:CBU_0254 "ribosomal protein L1... 237 5.7e-20 1
TIGR_CMR|SPO_0501 - symbol:SPO_0501 "ribosomal protein L1... 218 5.8e-18 1
TIGR_CMR|CJE_1859 - symbol:CJE_1859 "ribosomal protein L1... 194 2.0e-15 1
GENEDB_PFALCIPARUM|PFF0650w - symbol:PFF0650w "ribosomal ... 182 3.8e-14 1
UNIPROTKB|Q6LFD5 - symbol:RPL18 "Putative 50S ribosomal p... 182 3.8e-14 1
TIGR_CMR|APH_0296 - symbol:APH_0296 "50S ribosomal protei... 170 7.1e-13 1
TIGR_CMR|ECH_0425 - symbol:ECH_0425 "ribosomal protein L1... 157 1.7e-11 1
TAIR|locus:4515103085 - symbol:AT3G17626 species:3702 "Ar... 143 5.2e-10 1
TIGR_CMR|NSE_0282 - symbol:NSE_0282 "ribosomal protein L1... 117 2.9e-07 1
TAIR|locus:2180310 - symbol:AT5G27820 species:3702 "Arabi... 111 1.3e-06 1
>TAIR|locus:2007690 [details] [associations]
symbol:EMB3105 "EMBRYO DEFECTIVE 3105" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0042254 "ribosome biogenesis" evidence=ISS]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0007389 "pattern
specification process" evidence=RCA] [GO:0008361 "regulation of
cell size" evidence=RCA] [GO:0009664 "plant-type cell wall
organization" evidence=RCA] [GO:0009832 "plant-type cell wall
biogenesis" evidence=RCA] [GO:0009926 "auxin polar transport"
evidence=RCA] [GO:0010015 "root morphogenesis" evidence=RCA]
[GO:0010075 "regulation of meristem growth" evidence=RCA]
[GO:0040007 "growth" evidence=RCA] [GO:0048653 "anther development"
evidence=RCA] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006412
GO:GO:0009941 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
EMBL:AC007932 EMBL:AF336922 IPI:IPI00547186 PIR:E96523
RefSeq:NP_175268.1 UniGene:At.15427 UniGene:At.67857
ProteinModelPortal:Q9SX68 SMR:Q9SX68 STRING:Q9SX68 PaxDb:Q9SX68
PRIDE:Q9SX68 ProMEX:Q9SX68 EnsemblPlants:AT1G48350.1 GeneID:841255
KEGG:ath:AT1G48350 GeneFarm:175 TAIR:At1g48350 eggNOG:COG0256
HOGENOM:HOG000248742 InParanoid:Q9SX68 KO:K02881 OMA:GNKYHGR
PhylomeDB:Q9SX68 ProtClustDB:CLSN2682213 Genevestigator:Q9SX68
GermOnline:AT1G48350 TIGRFAMs:TIGR00060 Uniprot:Q9SX68
Length = 170
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 119/170 (70%), Positives = 136/170 (80%)
Query: 3 AGASSVWML-NQSSFLGSCQQLSSVSKLVXXXXXXXXXXXLFIVEASTRPRTKREDRTAR 61
+G SV ++ N+S+FLG+ Q +V + +VEA T+ T EDR AR
Sbjct: 5 SGCGSVSLITNRSAFLGNGLQHRAV--FLKPWSSSSLQSRSMVVEAKTK--TSSEDRIAR 60
Query: 62 HSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPT 121
HSRIRKK++GT ERPRLCVFRSNKHLYVQVIDDTKMHTLASAST QKPISEE DY+SGPT
Sbjct: 61 HSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPT 120
Query: 122 IEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171
IEV+KKVGE+IAKSCLEKGITKVAFDRGGYPYHGRI+ALA AARE+GLQF
Sbjct: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRIEALAAAAREHGLQF 170
>TIGR_CMR|CHY_2293 [details] [associations]
symbol:CHY_2293 "ribosomal protein L18" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742
KO:K02881 OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B RefSeq:YP_361102.1 ProteinModelPortal:Q3A9T2
SMR:Q3A9T2 STRING:Q3A9T2 GeneID:3727753 KEGG:chy:CHY_2293
PATRIC:21277657 BioCyc:CHYD246194:GJCN-2292-MONOMER Uniprot:Q3A9T2
Length = 122
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 68/121 (56%), Positives = 85/121 (70%)
Query: 52 RTKRE-DRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPI 110
+T R +R RH R+RKKI GTPERPRL V+RS KH+Y Q+IDD TL +AST+ +
Sbjct: 4 KTNRNLERKRRHLRVRKKIHGTPERPRLNVYRSLKHIYAQIIDDVSGRTLVAASTLDPEL 63
Query: 111 SEELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 170
++ Y G IE +K VG +IA+ KGI KV FDRGGY YHGR++ALA+AARE GLQ
Sbjct: 64 RGKIGY--GGNIEAAKAVGRLIAERAKAKGIEKVVFDRGGYLYHGRVKALAEAAREGGLQ 121
Query: 171 F 171
F
Sbjct: 122 F 122
>TIGR_CMR|BA_0126 [details] [associations]
symbol:BA_0126 "ribosomal protein L18" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256
HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR TIGRFAMs:TIGR00060
ProtClustDB:PRK05593 HAMAP:MF_01337_B RefSeq:NP_842694.1
RefSeq:YP_016731.1 RefSeq:YP_026412.1 ProteinModelPortal:Q81VR4
SMR:Q81VR4 DNASU:1087013 EnsemblBacteria:EBBACT00000013313
EnsemblBacteria:EBBACT00000016218 EnsemblBacteria:EBBACT00000019264
GeneID:1087013 GeneID:2818212 GeneID:2851571 KEGG:ban:BA_0126
KEGG:bar:GBAA_0126 KEGG:bat:BAS0126
BioCyc:BANT260799:GJAJ-137-MONOMER
BioCyc:BANT261594:GJ7F-139-MONOMER Uniprot:Q81VR4
Length = 120
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 68/118 (57%), Positives = 86/118 (72%)
Query: 54 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEE 113
K R RH+R+R K+ GT ERPRL VFRSN+H+Y QVIDD TL SAST+ K ++
Sbjct: 7 KNATRKKRHARVRAKLTGTAERPRLNVFRSNQHIYAQVIDDVNGVTLVSASTLDKDLA-- 64
Query: 114 LDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171
L+ +S IE + KVGE +AK +EKG+ +V FDRGGY YHGR++ALA+AARE GLQF
Sbjct: 65 LNGTSN--IEAATKVGESVAKRAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120
>TIGR_CMR|GSU_2841 [details] [associations]
symbol:GSU_2841 "ribosomal protein L18" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR004389
InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_953884.2 ProteinModelPortal:Q749A3 SMR:Q749A3
GeneID:2686815 KEGG:gsu:GSU2841 PATRIC:22028529
BioCyc:GSUL243231:GH27-2807-MONOMER Uniprot:Q749A3
Length = 122
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 66/118 (55%), Positives = 83/118 (70%)
Query: 54 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEE 113
K+ R +R+RKKI GT ERPRL VF+S +H+Y Q+IDDT TL SAST+QK SE
Sbjct: 7 KKVAHLKRKTRVRKKIRGTTERPRLNVFKSAQHIYAQIIDDTTGTTLVSASTVQKEASES 66
Query: 114 LDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171
L++ +E +K+VG +IAK LEK I V FDR G+ YHGRI+ALAD+ARE GL F
Sbjct: 67 LNHCGN--VEAAKRVGALIAKRALEKNIATVVFDRNGFLYHGRIKALADSARENGLTF 122
>TIGR_CMR|DET_0490 [details] [associations]
symbol:DET_0490 "ribosomal protein L18" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B RefSeq:YP_181234.1 ProteinModelPortal:Q3Z965
STRING:Q3Z965 GeneID:3230240 KEGG:det:DET0490 PATRIC:21608049
BioCyc:DETH243164:GJNF-490-MONOMER Uniprot:Q3Z965
Length = 121
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 64/118 (54%), Positives = 80/118 (67%)
Query: 55 REDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEEL 114
RE R RH R+RKK+ GT RPRLCVFRS +++Y QVI+D TL AST + EL
Sbjct: 7 REARIVRHERLRKKVSGTEARPRLCVFRSIENIYTQVINDNCGSTLVQASTKDAELKAEL 66
Query: 115 DYSSGPT-IEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171
D G T E + +G +IAK LE GI++V FDRGGY YHGR++ALA+AAR GL+F
Sbjct: 67 D---GKTKTEQAVVIGNLIAKRSLEAGISEVVFDRGGYKYHGRVKALAEAARSGGLKF 121
>UNIPROTKB|P66076 [details] [associations]
symbol:rplR "50S ribosomal protein L18" species:1773
"Mycobacterium tuberculosis" [GO:0040007 "growth" evidence=IMP]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0040007
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006412 GO:GO:0005840 EMBL:BX842574 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B PIR:C70644 RefSeq:NP_215234.1 RefSeq:NP_335165.1
RefSeq:YP_006514064.1 ProteinModelPortal:P66076 SMR:P66076
PRIDE:P66076 EnsemblBacteria:EBMYCT00000002810
EnsemblBacteria:EBMYCT00000070227 GeneID:13318609 GeneID:888457
GeneID:926038 KEGG:mtc:MT0745 KEGG:mtu:Rv0720 KEGG:mtv:RVBD_0720
PATRIC:18123373 TubercuList:Rv0720 Uniprot:P66076
Length = 122
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 57/119 (47%), Positives = 77/119 (64%)
Query: 53 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISE 112
T+R R RH+R+RKK+ GT ERPRL V RS +H++VQ+++D T+A+AS+++ +
Sbjct: 8 TRRISRLRRHTRLRKKLSGTAERPRLVVHRSARHIHVQLVNDLNGTTVAAASSIEADVRG 67
Query: 113 ELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171
G S +VG++IA+ GI V FDRGGY Y GRI ALADAARE GL F
Sbjct: 68 V----PGDKKARSVRVGQLIAERAKAAGIDTVVFDRGGYTYGGRIAALADAARENGLSF 122
>TIGR_CMR|SO_0247 [details] [associations]
symbol:SO_0247 "ribosomal protein L18" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_715887.1 ProteinModelPortal:Q8EK53 SMR:Q8EK53
GeneID:1168130 KEGG:son:SO_0247 PATRIC:23520187 OMA:GRQTRAK
Uniprot:Q8EK53
Length = 116
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 56/118 (47%), Positives = 79/118 (66%)
Query: 54 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEE 113
K+ R R R RKKI RL V R+ +H+Y QVI+ + +A+AST++K + E+
Sbjct: 3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQ 60
Query: 114 LDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171
L S+G ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GLQF
Sbjct: 61 LK-STG-NVDAAKAVGKFVAERAIEKGVTNVAFDRSGFKYHGRVAALADAAREAGLQF 116
>UNIPROTKB|Q9KP00 [details] [associations]
symbol:rplR "50S ribosomal protein L18" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR004389 InterPro:IPR005484
Pfam:PF00861 GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B PIR:F82057 RefSeq:NP_232208.1
ProteinModelPortal:Q9KP00 SMR:Q9KP00 PRIDE:Q9KP00 DNASU:2615597
GeneID:2615597 KEGG:vch:VC2580 PATRIC:20084186 Uniprot:Q9KP00
Length = 117
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 54/118 (45%), Positives = 77/118 (65%)
Query: 54 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEE 113
K+ R R +R R+KI RL V R+ +H+Y QVI +A+AST++K I E+
Sbjct: 3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQ 61
Query: 114 LDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171
+ Y+ I+ +K VG+ +A+ LEKG+T VAFDR G+ YHGR+ ALAD+ARE GL+F
Sbjct: 62 VKYTGN--IDAAKAVGKAVAERALEKGVTVVAFDRSGFQYHGRVAALADSAREAGLKF 117
>TIGR_CMR|CPS_0617 [details] [associations]
symbol:CPS_0617 "ribosomal protein L18" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
TIGRFAMs:TIGR00060 HAMAP:MF_01337_B RefSeq:YP_267367.1
ProteinModelPortal:Q488Z7 SMR:Q488Z7 STRING:Q488Z7 GeneID:3520558
KEGG:cps:CPS_0617 PATRIC:21464561 OMA:FRFHGRV
BioCyc:CPSY167879:GI48-704-MONOMER Uniprot:Q488Z7
Length = 117
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 54/118 (45%), Positives = 76/118 (64%)
Query: 54 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEE 113
KR R R R R KI RL +FR+ +H+Y Q+I T +ASAST+ K +S +
Sbjct: 3 KRSSRLRRAKRARAKISELGAN-RLVIFRTPRHIYAQLIAPTGSEVIASASTLDKEVSAQ 61
Query: 114 LDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171
++ +G + + VG+ IA+ + KGITK+AFDR G+ YHGR++ALA+AARE GLQF
Sbjct: 62 IE-KTG-NVAAATAVGKAIAERAVAKGITKIAFDRSGFLYHGRVKALAEAAREAGLQF 117
>TIGR_CMR|VC_2580 [details] [associations]
symbol:VC_2580 "ribosomal protein L18" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B PIR:F82057
RefSeq:NP_232208.1 ProteinModelPortal:Q9KP00 SMR:Q9KP00
PRIDE:Q9KP00 DNASU:2615597 GeneID:2615597 KEGG:vch:VC2580
PATRIC:20084186 Uniprot:Q9KP00
Length = 117
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 54/118 (45%), Positives = 77/118 (65%)
Query: 54 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEE 113
K+ R R +R R+KI RL V R+ +H+Y QVI +A+AST++K I E+
Sbjct: 3 KKASRIRRATRARRKI-AELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQ 61
Query: 114 LDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171
+ Y+ I+ +K VG+ +A+ LEKG+T VAFDR G+ YHGR+ ALAD+ARE GL+F
Sbjct: 62 VKYTGN--IDAAKAVGKAVAERALEKGVTVVAFDRSGFQYHGRVAALADSAREAGLKF 117
>UNIPROTKB|P0C018 [details] [associations]
symbol:rplR "50S ribosomal subunit protein L18"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 EMBL:X01563
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 EMBL:U18997 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 PDB:2VHM PDBsum:2VHM PDB:2RDO
PDBsum:2RDO eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11
PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T PDBsum:3J0W
PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF
PDBsum:3UOS PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4
PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM
PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK
PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2VHN PDB:2WWQ PDB:2Z4L
PDB:2Z4N PDB:3DF2 PDB:3DF4 PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N
PDB:3I1P PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU
PDB:3J01 PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD
PDB:3OFQ PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T
PDB:4GAR PDB:4GAU PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8
PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC
PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO
PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI
PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1
PDBsum:2VHN PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N PDBsum:3DF2
PDBsum:3DF4 PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N
PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T PDBsum:3I20 PDBsum:3I22
PDBsum:3IZT PDBsum:3IZU PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR
PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ
PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S
PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU PDB:3BBX PDBsum:3BBX
ProtClustDB:PRK05593 HAMAP:MF_01337_B PIR:A02803 RefSeq:NP_417763.1
RefSeq:YP_492128.1 ProteinModelPortal:P0C018 SMR:P0C018
DIP:DIP-47908N IntAct:P0C018 MINT:MINT-1293631 PaxDb:P0C018
PRIDE:P0C018 EnsemblBacteria:EBESCT00000004130
EnsemblBacteria:EBESCT00000018241 GeneID:12934402 GeneID:947804
KEGG:ecj:Y75_p3872 KEGG:eco:b3304 PATRIC:32122040 EchoBASE:EB0872
EcoGene:EG10879 BioCyc:EcoCyc:EG10879-MONOMER
BioCyc:ECOL316407:JW3266-MONOMER EvolutionaryTrace:P0C018
Genevestigator:P0C018 Uniprot:P0C018
Length = 117
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 54/118 (45%), Positives = 75/118 (63%)
Query: 54 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEE 113
K+ R R +R R+K+ RL V R+ +H+Y QVI L +AST++K I+E+
Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQ 61
Query: 114 LDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171
L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQF
Sbjct: 62 LKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117
>TIGR_CMR|CBU_0254 [details] [associations]
symbol:CBU_0254 "ribosomal protein L18" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR004389 InterPro:IPR005484
Pfam:PF00861 GO:GO:0006412 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_819298.1 ProteinModelPortal:Q83ER0 SMR:Q83ER0
GeneID:1208135 KEGG:cbu:CBU_0254 PATRIC:17929201
BioCyc:CBUR227377:GJ7S-260-MONOMER Uniprot:Q83ER0
Length = 117
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 50/118 (42%), Positives = 72/118 (61%)
Query: 54 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEE 113
K+E R R R R KI RLCV RS H+Y Q+I L AST++K + +
Sbjct: 3 KQEKRIRRARRTRAKIKELGA-VRLCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQ 61
Query: 114 LDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171
+ + G I+ + +G++IA+ + G+TKVAFDR GY YHGR++ALA+A RE G++F
Sbjct: 62 IKH--GGNIQAATAIGKLIAQRAKKAGVTKVAFDRSGYKYHGRVRALAEAVREGGIEF 117
>TIGR_CMR|SPO_0501 [details] [associations]
symbol:SPO_0501 "ribosomal protein L18" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR004389
InterPro:IPR005484 Pfam:PF00861 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
OMA:FRFHGRV RefSeq:YP_165763.1 ProteinModelPortal:Q5LW42
GeneID:3196026 KEGG:sil:SPO0501 PATRIC:23374263 Uniprot:Q5LW42
Length = 119
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 52/119 (43%), Positives = 74/119 (62%)
Query: 53 TKREDRTARHSRIRKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPIS 111
+KR R R+R K+ R RL V RSNK++ Q+IDD + TLA+ASTM+K
Sbjct: 4 SKRTLFLKRRLRVRNKLRKVNAGRLRLSVHRSNKNISAQLIDDVRGVTLAAASTMEK--- 60
Query: 112 EELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 170
+L +E +KKVG IA+ + G+ + FDRGG+ +HG+++ALADAARE GL+
Sbjct: 61 -DLGVVGKNNVEAAKKVGAAIAERAKKAGVEEAYFDRGGFLFHGKVKALADAAREGGLK 118
>TIGR_CMR|CJE_1859 [details] [associations]
symbol:CJE_1859 "ribosomal protein L18" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
GO:GO:0006412 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742
KO:K02881 TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:YP_179829.1 ProteinModelPortal:Q5HSA6 STRING:Q5HSA6
GeneID:3232486 KEGG:cjr:CJE1859 PATRIC:20045550 OMA:AQAIDDT
BioCyc:CJEJ195099:GJC0-1898-MONOMER Uniprot:Q5HSA6
Length = 118
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 47/113 (41%), Positives = 62/113 (54%)
Query: 58 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYS 117
R R RIR KI G PR+ VF+SN+ LY+Q IDD K TLA+ +L
Sbjct: 13 RIKRKKRIRAKISGCENFPRISVFKSNRTLYIQAIDDVKAVTLAAVD------GRKLGVK 66
Query: 118 SGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 170
+ E +KK+ AK+ K I + FDR GY YHG I ALA++ RE G++
Sbjct: 67 ANK--EGAKKIAAEFAKTLKAKKIEQAVFDRNGYVYHGVIAALAESLRENGIR 117
>GENEDB_PFALCIPARUM|PFF0650w [details] [associations]
symbol:PFF0650w "ribosomal protein L18,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0042254 GO:GO:0005840 GO:GO:0003735 EMBL:AL844505
GenomeReviews:AL844505_GR GO:GO:0020011 eggNOG:COG0256
RefSeq:XP_966121.1 ProteinModelPortal:Q6LFD5
EnsemblProtists:PFF0650w:mRNA GeneID:3885756 KEGG:pfa:PFF0650w
EuPathDB:PlasmoDB:PF3D7_0613400 HOGENOM:HOG000281499
ProtClustDB:PTZ00032 Uniprot:Q6LFD5
Length = 213
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 44/117 (37%), Positives = 66/117 (56%)
Query: 63 SRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELD-Y----- 116
S + K+I PRL V +N H+Y +IDD K + L S + +S+ L Y
Sbjct: 95 SNVDKEIREGKRVPRLRVRNTNNHIYASIIDDYKKYVLCSTCSRDATLSKILGTYRRKAT 154
Query: 117 ----SSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 169
++G TI+ + ++G++I K L KGI KV FDR +PY G+++ALA+ AR GL
Sbjct: 155 NRVINNGRTIKSAWEIGKIIGKKALSKGIFKVRFDRARHPYAGKVEALAEGARAVGL 211
>UNIPROTKB|Q6LFD5 [details] [associations]
symbol:RPL18 "Putative 50S ribosomal protein L18,
apicoplast" species:36329 "Plasmodium falciparum 3D7" [GO:0020011
"apicoplast" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0042254 GO:GO:0005840 GO:GO:0003735 EMBL:AL844505
GenomeReviews:AL844505_GR GO:GO:0020011 eggNOG:COG0256
RefSeq:XP_966121.1 ProteinModelPortal:Q6LFD5
EnsemblProtists:PFF0650w:mRNA GeneID:3885756 KEGG:pfa:PFF0650w
EuPathDB:PlasmoDB:PF3D7_0613400 HOGENOM:HOG000281499
ProtClustDB:PTZ00032 Uniprot:Q6LFD5
Length = 213
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 44/117 (37%), Positives = 66/117 (56%)
Query: 63 SRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELD-Y----- 116
S + K+I PRL V +N H+Y +IDD K + L S + +S+ L Y
Sbjct: 95 SNVDKEIREGKRVPRLRVRNTNNHIYASIIDDYKKYVLCSTCSRDATLSKILGTYRRKAT 154
Query: 117 ----SSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 169
++G TI+ + ++G++I K L KGI KV FDR +PY G+++ALA+ AR GL
Sbjct: 155 NRVINNGRTIKSAWEIGKIIGKKALSKGIFKVRFDRARHPYAGKVEALAEGARAVGL 211
>TIGR_CMR|APH_0296 [details] [associations]
symbol:APH_0296 "50S ribosomal protein L18" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042255 "ribosome assembly"
evidence=ISS] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0019843 eggNOG:COG0256
HOGENOM:HOG000248742 KO:K02881 TIGRFAMs:TIGR00060
RefSeq:YP_504908.1 ProteinModelPortal:Q2GL43 STRING:Q2GL43
GeneID:3931248 KEGG:aph:APH_0296 PATRIC:20949166 OMA:KSTRSHI
ProtClustDB:PRK05593 BioCyc:APHA212042:GHPM-326-MONOMER
HAMAP:MF_01337_B Uniprot:Q2GL43
Length = 121
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 45/120 (37%), Positives = 63/120 (52%)
Query: 54 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEE 113
KR +R R R+R K+ RL VF+SN+H Y Q+IDD T+A+AST++ +
Sbjct: 7 KRAER--RRRRVRLKLRSLSSI-RLSVFKSNRHFYAQLIDDEAGRTVAAASTLESEVLAV 63
Query: 114 LD--YSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171
++G V+K + E I S L+ K FDRG Y Y G + A AD R G +F
Sbjct: 64 ASRRVNAGAVKIVAKLLAERI--SGLDAAYRKFVFDRGSYRYMGVVAAFADELRSLGFEF 121
>TIGR_CMR|ECH_0425 [details] [associations]
symbol:ECH_0425 "ribosomal protein L18" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742
KO:K02881 ProtClustDB:PRK05593 HAMAP:MF_01337_B RefSeq:YP_507243.1
ProteinModelPortal:Q2GH40 STRING:Q2GH40 GeneID:3927497
KEGG:ech:ECH_0425 PATRIC:20576327 OMA:ASTMQKS
BioCyc:ECHA205920:GJNR-426-MONOMER Uniprot:Q2GH40
Length = 121
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 40/113 (35%), Positives = 60/113 (53%)
Query: 61 RHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELD--YSS 118
R R+R K+ RL +F+SN+H YVQ+IDD T ASAST+++ + + +S
Sbjct: 12 RKKRVRLKLKRNSSLLRLSIFKSNRHFYVQLIDDKCGRTFASASTLEREVVALTNRRVNS 71
Query: 119 GPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171
V+K + + + K L+ K FDRG Y Y G + A+ R YG +F
Sbjct: 72 DSVKIVAKLMSDRLNK--LDN-CKKFIFDRGLYKYTGIVSEFANELRSYGFEF 121
>TAIR|locus:4515103085 [details] [associations]
symbol:AT3G17626 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] EMBL:CP002686
GenomeReviews:BA000014_GR EMBL:AB022219 IPI:IPI00891590
RefSeq:NP_001118650.1 UniGene:At.53359 ProteinModelPortal:B3H6U3
SMR:B3H6U3 EnsemblPlants:AT3G17626.1 GeneID:6240906
KEGG:ath:AT3G17626 TAIR:At3g17626 eggNOG:KOG1870 PhylomeDB:B3H6U3
Genevestigator:B3H6U3 Uniprot:B3H6U3
Length = 53
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 27/38 (71%), Positives = 32/38 (84%)
Query: 118 SGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHG 155
+G TIE++KKVGE+I KSC+E GITKVAFDR Y YHG
Sbjct: 10 TGSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47
>TIGR_CMR|NSE_0282 [details] [associations]
symbol:NSE_0282 "ribosomal protein L18" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881 ProtClustDB:PRK05593
RefSeq:YP_506173.1 ProteinModelPortal:Q2GEC3 STRING:Q2GEC3
GeneID:3932017 KEGG:nse:NSE_0282 PATRIC:22680657 OMA:ASAYHGL
BioCyc:NSEN222891:GHFU-309-MONOMER Uniprot:Q2GEC3
Length = 117
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 38/116 (32%), Positives = 56/116 (48%)
Query: 52 RTKREDRTARHSRIRKKIDGTPERP-RLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPI 110
R R D+ A RK+ G + P RL V R N++ + Q+IDDT T+ ST+ K
Sbjct: 4 RLNRRDKRAFRVHYRKR--G--KLPLRLVVSRKNRNFHAQIIDDTSASTVYHVSTLSKDF 59
Query: 111 SEELDY-SSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAR 165
+ +S E+++ I +S KG +KV FD G YHG + A+ R
Sbjct: 60 VRKGGVLNSSVVAELAEYFVSRIPESL--KG-SKVVFDSGASAYHGLVALFAEKVR 112
>TAIR|locus:2180310 [details] [associations]
symbol:AT5G27820 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0042254 "ribosome
biogenesis" evidence=ISS] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] InterPro:IPR005484 Pfam:PF00861
EMBL:CP002688 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AY085957 EMBL:BT024558 IPI:IPI00535527 RefSeq:NP_198134.1
UniGene:At.30784 HSSP:P09415 ProteinModelPortal:Q8LDK5 SMR:Q8LDK5
STRING:Q8LDK5 PRIDE:Q8LDK5 EnsemblPlants:AT5G27820.1 GeneID:832844
KEGG:ath:AT5G27820 TAIR:At5g27820 HOGENOM:HOG000248743
InParanoid:Q8LDK5 OMA:KMHFTNK PhylomeDB:Q8LDK5
ProtClustDB:CLSN2687140 Genevestigator:Q8LDK5 Uniprot:Q8LDK5
Length = 114
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 25/89 (28%), Positives = 48/89 (53%)
Query: 83 SNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEMIAKSCLEKGIT 142
+NK ++ QVI SAS+ +K + E +D + + + K+G+++ + L K I
Sbjct: 26 TNKFVHAQVIHSPTATVACSASSQEKALRETMDITRD--VAAASKIGKILGERLLMKDIP 83
Query: 143 KVAFD-RGGYPYHGRIQALADAAREYGLQ 170
V + YHG+++A+ D+ RE G++
Sbjct: 84 AVTIQMKKEQRYHGKVKAVIDSVREAGVK 112
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.130 0.372 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 171 160 0.00097 106 3 11 22 0.36 32
30 0.43 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 589 (63 KB)
Total size of DFA: 139 KB (2086 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.98u 0.18s 14.16t Elapsed: 00:00:00
Total cpu time: 13.98u 0.18s 14.16t Elapsed: 00:00:00
Start: Thu May 9 22:18:28 2013 End: Thu May 9 22:18:28 2013