Query 030804
Match_columns 171
No_of_seqs 142 out of 1123
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 07:14:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_Q Ribosomal protein L18; 100.0 4.7E-57 1.6E-61 362.1 0.6 160 10-171 1-161 (161)
2 3r8s_O 50S ribosomal protein L 100.0 1.7E-47 5.7E-52 292.5 13.2 115 54-171 2-116 (116)
3 3v2d_S 50S ribosomal protein L 100.0 5E-47 1.7E-51 288.7 10.7 110 54-171 3-112 (112)
4 1ovy_A 50S ribosomal protein L 100.0 5.5E-47 1.9E-51 291.3 8.1 115 53-171 6-120 (120)
5 2zjr_L 50S ribosomal protein L 100.0 4.7E-45 1.6E-49 278.5 3.7 109 55-171 3-114 (114)
6 1vq8_N 50S ribosomal protein L 100.0 1.2E-36 4.1E-41 248.9 11.3 113 54-171 14-130 (187)
7 3j21_O 50S ribosomal protein L 100.0 1.6E-36 5.4E-41 250.8 8.1 115 53-171 13-131 (203)
8 2zkr_n 60S ribosomal protein L 100.0 8.5E-29 2.9E-33 213.5 14.1 96 74-171 47-173 (297)
9 3u5e_D 60S ribosomal protein L 99.9 2.6E-25 9E-30 192.0 12.7 97 73-171 46-173 (297)
10 4a17_M RPL5, 60S ribosomal pro 99.9 2.4E-25 8.1E-30 192.4 11.7 97 73-171 46-173 (301)
11 3iz5_Q 60S ribosomal protein L 99.9 1.1E-21 3.8E-26 169.6 9.4 93 74-171 51-173 (304)
12 2vqe_K 30S ribosomal protein S 97.6 0.00051 1.7E-08 52.8 10.4 90 73-170 14-104 (129)
13 3j20_M 30S ribosomal protein S 97.4 0.0013 4.5E-08 51.1 10.3 93 74-171 13-112 (137)
14 3bbn_K Ribosomal protein S11; 97.4 0.00042 1.4E-08 54.1 7.2 90 73-170 27-117 (140)
15 3r8n_K 30S ribosomal protein S 97.2 0.0018 6E-08 49.0 8.1 88 75-170 6-94 (117)
16 2xzm_K RPS14E; ribosome, trans 96.9 0.0033 1.1E-07 49.6 7.5 92 75-171 28-126 (151)
17 3u5c_O RP59A, 40S ribosomal pr 95.9 0.014 4.7E-07 45.3 6.0 93 73-170 12-111 (137)
18 2h0a_A TTHA0807, transcription 75.5 6.7 0.00023 30.1 6.2 43 129-171 102-152 (276)
19 3clk_A Transcription regulator 73.3 7.4 0.00025 30.4 6.0 43 129-171 113-158 (290)
20 3g85_A Transcriptional regulat 71.7 5.6 0.00019 30.9 4.9 44 128-171 114-160 (289)
21 2qu7_A Putative transcriptiona 71.3 6.4 0.00022 30.6 5.2 44 128-171 109-155 (288)
22 3qk7_A Transcriptional regulat 70.4 6.6 0.00023 30.9 5.2 43 129-171 114-159 (294)
23 3hcw_A Maltose operon transcri 70.3 5.9 0.0002 31.2 4.9 46 121-170 115-163 (295)
24 3d8u_A PURR transcriptional re 70.1 9.7 0.00033 29.2 6.0 47 121-171 104-153 (275)
25 3tb6_A Arabinose metabolism tr 69.9 8.5 0.00029 29.7 5.6 44 128-171 124-169 (298)
26 1byk_A Protein (trehalose oper 69.8 13 0.00043 28.3 6.5 43 128-170 102-148 (255)
27 3kke_A LACI family transcripti 69.7 9.7 0.00033 30.1 6.0 44 128-171 118-164 (303)
28 3k4h_A Putative transcriptiona 69.2 11 0.00038 29.1 6.2 44 128-171 118-164 (292)
29 3gv0_A Transcriptional regulat 69.1 11 0.00037 29.5 6.1 43 128-170 114-159 (288)
30 3cs3_A Sugar-binding transcrip 69.0 7 0.00024 30.3 5.0 43 129-171 106-151 (277)
31 3egc_A Putative ribose operon 68.0 12 0.00042 29.0 6.2 44 128-171 112-158 (291)
32 1dbq_A Purine repressor; trans 67.8 12 0.0004 29.0 6.0 47 121-171 110-159 (289)
33 3brq_A HTH-type transcriptiona 67.6 12 0.0004 28.9 5.9 48 120-171 122-172 (296)
34 3gyb_A Transcriptional regulat 67.3 12 0.00042 28.8 6.0 44 128-171 105-149 (280)
35 3miz_A Putative transcriptiona 67.2 9.1 0.00031 30.0 5.3 44 128-171 118-164 (301)
36 3e3m_A Transcriptional regulat 66.1 13 0.00044 30.2 6.2 45 127-171 173-221 (355)
37 3dbi_A Sugar-binding transcrip 65.8 14 0.00047 29.6 6.3 45 127-171 167-214 (338)
38 3huu_A Transcription regulator 65.3 11 0.00038 29.6 5.5 44 128-171 131-177 (305)
39 3c3k_A Alanine racemase; struc 64.7 14 0.00049 28.7 6.0 48 120-171 107-157 (285)
40 3k9c_A Transcriptional regulat 64.7 14 0.00047 28.9 6.0 46 121-170 110-157 (289)
41 2fep_A Catabolite control prot 64.6 14 0.00048 28.9 6.0 48 120-171 116-167 (289)
42 3qi7_A Putative transcriptiona 64.1 7.4 0.00025 34.2 4.6 45 127-171 142-191 (371)
43 1qpz_A PURA, protein (purine n 63.8 15 0.0005 29.6 6.1 48 120-171 160-210 (340)
44 2fvy_A D-galactose-binding per 63.8 18 0.00062 28.1 6.4 52 119-170 110-172 (309)
45 4fnq_A Alpha-galactosidase AGA 62.6 7.9 0.00027 36.4 4.8 40 132-171 351-408 (729)
46 2o20_A Catabolite control prot 62.2 18 0.0006 29.0 6.3 43 129-171 168-213 (332)
47 3e61_A Putative transcriptiona 61.7 11 0.00037 29.0 4.7 45 127-171 108-155 (277)
48 3ctp_A Periplasmic binding pro 61.0 18 0.0006 29.0 6.0 43 129-171 160-205 (330)
49 3o74_A Fructose transport syst 60.9 8.2 0.00028 29.5 3.9 43 128-170 107-152 (272)
50 3bbl_A Regulatory protein of L 60.8 17 0.00059 28.3 5.8 47 121-171 109-158 (287)
51 3rot_A ABC sugar transporter, 60.1 16 0.00053 28.7 5.5 43 129-171 116-163 (297)
52 2rgy_A Transcriptional regulat 59.3 15 0.00053 28.6 5.3 49 119-171 110-161 (290)
53 2hsg_A Glucose-resistance amyl 58.6 17 0.00059 29.0 5.6 43 129-171 165-211 (332)
54 3ff4_A Uncharacterized protein 58.5 9.8 0.00033 27.9 3.7 36 131-171 73-108 (122)
55 3fwz_A Inner membrane protein 58.4 18 0.0006 25.8 5.1 24 127-150 17-40 (140)
56 1y81_A Conserved hypothetical 56.7 11 0.00039 27.7 3.9 34 133-171 86-119 (138)
57 2hc5_A ORF 99, hypothetical pr 56.5 54 0.0019 24.1 7.6 45 56-100 38-82 (117)
58 2w4l_A DCMP deaminse, deoxycyt 56.1 14 0.00047 28.9 4.5 40 132-171 110-149 (178)
59 3gbv_A Putative LACI-family tr 55.2 19 0.00066 27.7 5.2 43 129-171 121-172 (304)
60 3g1w_A Sugar ABC transporter; 54.0 22 0.00075 27.7 5.4 43 128-170 112-158 (305)
61 2d59_A Hypothetical protein PH 53.6 13 0.00045 27.4 3.8 37 130-171 91-127 (144)
62 3kjx_A Transcriptional regulat 50.8 16 0.00055 29.4 4.2 47 121-171 169-219 (344)
63 2duw_A Putative COA-binding pr 50.0 11 0.00038 27.9 2.9 33 134-171 88-120 (145)
64 4fe7_A Xylose operon regulator 49.5 36 0.0012 28.4 6.3 45 126-170 124-173 (412)
65 3snr_A Extracellular ligand-bi 49.2 26 0.00089 27.6 5.1 44 127-170 121-165 (362)
66 3llv_A Exopolyphosphatase-rela 48.9 32 0.0011 24.1 5.1 23 127-149 16-38 (141)
67 3ksm_A ABC-type sugar transpor 48.9 21 0.00071 27.1 4.4 51 120-170 106-160 (276)
68 1iuk_A Hypothetical protein TT 48.7 15 0.00052 27.0 3.4 35 132-171 86-120 (140)
69 3o1i_D Periplasmic protein TOR 48.3 15 0.00051 28.4 3.5 43 128-170 118-168 (304)
70 4fn4_A Short chain dehydrogena 48.1 30 0.001 28.1 5.4 42 125-170 16-57 (254)
71 3h5t_A Transcriptional regulat 47.8 22 0.00075 28.9 4.6 44 127-170 175-238 (366)
72 3jvd_A Transcriptional regulat 46.8 31 0.0011 27.7 5.4 45 126-170 159-206 (333)
73 2jui_A PLNE; ampiphilic alpha 46.6 11 0.00038 22.0 1.9 20 146-165 1-20 (33)
74 4h41_A Putative alpha-L-fucosi 46.4 18 0.0006 31.4 3.9 40 132-171 59-116 (340)
75 1jye_A Lactose operon represso 45.8 37 0.0013 27.4 5.7 43 128-170 166-211 (349)
76 3sg0_A Extracellular ligand-bi 44.4 31 0.0011 27.5 4.9 44 127-170 145-189 (386)
77 4evq_A Putative ABC transporte 44.3 34 0.0011 27.3 5.1 45 127-171 137-182 (375)
78 2fqx_A Membrane lipoprotein TM 44.1 56 0.0019 26.4 6.5 51 120-171 108-161 (318)
79 2rjo_A Twin-arginine transloca 44.1 32 0.0011 27.3 5.0 49 120-170 117-169 (332)
80 3hs3_A Ribose operon repressor 44.0 24 0.00082 27.3 4.1 43 128-171 110-155 (277)
81 2h3h_A Sugar ABC transporter, 43.5 32 0.0011 27.1 4.8 49 120-170 104-155 (313)
82 3tev_A Glycosyl hyrolase, fami 42.9 17 0.00058 31.4 3.3 51 119-169 104-173 (351)
83 1owl_A Photolyase, deoxyribodi 42.3 34 0.0012 30.3 5.3 43 129-171 81-124 (484)
84 3uug_A Multiple sugar-binding 41.7 55 0.0019 25.6 6.0 48 120-167 107-160 (330)
85 1pea_A Amidase operon; gene re 41.5 29 0.001 28.2 4.4 42 129-170 128-170 (385)
86 3c85_A Putative glutathione-re 41.2 42 0.0015 24.6 5.0 24 127-150 49-73 (183)
87 3sju_A Keto reductase; short-c 40.5 41 0.0014 26.6 5.1 39 126-168 34-72 (279)
88 3i1j_A Oxidoreductase, short c 40.2 54 0.0018 24.9 5.6 40 125-168 23-62 (247)
89 3l49_A ABC sugar (ribose) tran 40.1 53 0.0018 25.1 5.6 48 121-170 107-158 (291)
90 3b09_A Peptidyl-prolyl CIS-tra 39.7 26 0.00089 24.5 3.3 22 122-143 30-51 (88)
91 3hut_A Putative branched-chain 39.5 36 0.0012 27.0 4.6 42 129-170 127-169 (358)
92 3awd_A GOX2181, putative polyo 39.5 53 0.0018 25.0 5.4 40 125-168 22-61 (260)
93 3bil_A Probable LACI-family tr 39.4 61 0.0021 26.1 6.0 45 121-169 168-215 (348)
94 3m0z_A Putative aldolase; MCSG 39.2 47 0.0016 27.9 5.3 73 87-169 115-188 (249)
95 3ipc_A ABC transporter, substr 39.0 54 0.0019 25.9 5.6 44 128-171 124-169 (356)
96 2dri_A D-ribose-binding protei 38.4 53 0.0018 25.1 5.3 49 120-170 104-155 (271)
97 3pxx_A Carveol dehydrogenase; 38.2 63 0.0022 25.1 5.8 43 126-168 20-70 (287)
98 1np7_A DNA photolyase; protein 37.7 31 0.0011 30.5 4.2 42 130-171 90-132 (489)
99 2jah_A Clavulanic acid dehydro 37.5 61 0.0021 25.0 5.6 39 126-168 17-55 (247)
100 2qh8_A Uncharacterized protein 37.4 37 0.0013 26.8 4.3 41 131-171 128-172 (302)
101 4g81_D Putative hexonate dehyd 37.3 42 0.0015 27.2 4.7 41 125-169 18-58 (255)
102 3tvs_A Cryptochrome-1; circadi 37.3 35 0.0012 30.9 4.6 42 130-171 89-131 (538)
103 3s55_A Putative short-chain de 37.2 65 0.0022 25.2 5.8 43 126-168 20-70 (281)
104 3bmx_A Uncharacterized lipopro 37.2 29 0.00099 32.1 4.1 51 119-169 147-216 (642)
105 2iks_A DNA-binding transcripti 37.1 42 0.0014 26.0 4.5 42 128-169 125-169 (293)
106 2x41_A Beta-glucosidase; hydro 36.8 46 0.0016 31.2 5.5 51 119-169 90-158 (721)
107 3h5o_A Transcriptional regulat 36.8 56 0.0019 26.1 5.3 42 128-169 165-208 (339)
108 1wek_A Hypothetical protein TT 36.7 65 0.0022 25.8 5.7 39 122-169 55-93 (217)
109 3lop_A Substrate binding perip 36.6 52 0.0018 26.3 5.1 43 129-171 129-172 (364)
110 1xg5_A ARPG836; short chain de 36.1 51 0.0017 25.7 4.9 41 124-168 40-80 (279)
111 3uve_A Carveol dehydrogenase ( 36.1 60 0.0021 25.5 5.4 43 126-168 21-75 (286)
112 1zy9_A Alpha-galactosidase; TM 36.1 25 0.00085 32.2 3.4 41 130-171 215-266 (564)
113 3brs_A Periplasmic binding pro 36.0 52 0.0018 25.1 4.9 46 121-170 113-163 (289)
114 3lft_A Uncharacterized protein 35.9 42 0.0014 26.3 4.4 42 130-171 120-165 (295)
115 3i09_A Periplasmic branched-ch 35.8 54 0.0018 26.3 5.1 44 128-171 127-171 (375)
116 1usg_A Leucine-specific bindin 35.8 50 0.0017 25.9 4.8 43 129-171 125-169 (346)
117 4acy_A Endo-alpha-mannosidase; 35.6 20 0.00068 31.4 2.6 44 128-171 104-149 (382)
118 4eyg_A Twin-arginine transloca 35.3 57 0.0019 25.9 5.1 44 127-170 125-169 (368)
119 2nyt_A Probable C->U-editing e 35.1 43 0.0015 26.6 4.3 33 139-171 109-142 (190)
120 2rhc_B Actinorhodin polyketide 35.1 51 0.0017 26.0 4.8 40 125-168 31-70 (277)
121 3t7c_A Carveol dehydrogenase; 35.0 70 0.0024 25.5 5.7 44 125-168 37-88 (299)
122 3abz_A Beta-glucosidase I; gly 34.9 55 0.0019 31.5 5.7 51 119-169 73-141 (845)
123 3pgx_A Carveol dehydrogenase; 34.9 64 0.0022 25.3 5.4 43 126-168 25-76 (280)
124 3cxt_A Dehydrogenase with diff 34.9 76 0.0026 25.4 5.9 39 126-168 44-82 (291)
125 3hg3_A Alpha-galactosidase A; 34.7 61 0.0021 28.6 5.6 52 120-171 33-100 (404)
126 3ftp_A 3-oxoacyl-[acyl-carrier 34.7 73 0.0025 25.1 5.7 40 125-168 37-76 (270)
127 1u3d_A Cryptochrome 1 apoprote 34.6 41 0.0014 29.9 4.5 43 129-171 90-133 (509)
128 4ad1_A Glycosyl hydrolase fami 34.6 31 0.001 30.0 3.6 44 128-171 105-151 (380)
129 3ksu_A 3-oxoacyl-acyl carrier 34.4 49 0.0017 25.9 4.6 42 126-168 21-62 (262)
130 3tsc_A Putative oxidoreductase 34.1 75 0.0026 24.8 5.6 44 125-168 20-72 (277)
131 3fy4_A 6-4 photolyase; DNA rep 34.0 34 0.0012 31.1 3.9 42 130-171 93-135 (537)
132 3ucx_A Short chain dehydrogena 34.0 70 0.0024 24.9 5.4 38 127-168 22-59 (264)
133 3m6y_A 4-hydroxy-2-oxoglutarat 33.7 52 0.0018 28.0 4.7 73 87-169 137-211 (275)
134 2h6r_A Triosephosphate isomera 33.7 18 0.00062 28.6 1.9 43 128-170 70-113 (219)
135 2ioy_A Periplasmic sugar-bindi 33.4 36 0.0012 26.3 3.6 47 121-170 105-156 (283)
136 3tjr_A Short chain dehydrogena 33.3 70 0.0024 25.6 5.4 40 125-168 40-79 (301)
137 1rcu_A Conserved hypothetical 33.1 75 0.0026 25.1 5.4 40 121-169 43-82 (195)
138 3oec_A Carveol dehydrogenase ( 32.9 78 0.0027 25.6 5.7 43 126-168 56-106 (317)
139 3noy_A 4-hydroxy-3-methylbut-2 32.8 26 0.00089 31.0 2.9 39 132-170 97-135 (366)
140 1yx1_A Hypothetical protein PA 32.6 29 0.00098 27.0 2.9 41 131-171 88-128 (264)
141 2wvv_A Alpha-L-fucosidase; alp 32.4 47 0.0016 29.4 4.6 42 130-171 81-141 (450)
142 1ae1_A Tropinone reductase-I; 32.4 77 0.0026 24.8 5.4 38 126-167 31-68 (273)
143 3c9i_A Tail needle protein GP2 32.2 21 0.00072 29.6 2.1 17 154-170 225-241 (242)
144 1zem_A Xylitol dehydrogenase; 32.1 70 0.0024 24.8 5.1 40 125-168 16-55 (262)
145 3qiv_A Short-chain dehydrogena 31.9 87 0.003 23.8 5.6 39 125-167 18-56 (253)
146 2zat_A Dehydrogenase/reductase 31.8 81 0.0028 24.3 5.4 39 125-167 23-61 (260)
147 1xu9_A Corticosteroid 11-beta- 31.7 78 0.0027 24.8 5.4 38 125-166 37-74 (286)
148 3pk0_A Short-chain dehydrogena 31.6 75 0.0026 24.8 5.2 39 126-168 20-58 (262)
149 1fmc_A 7 alpha-hydroxysteroid 31.5 83 0.0028 23.7 5.4 39 124-166 19-57 (255)
150 2zxd_A Alpha-L-fucosidase, put 31.4 46 0.0016 29.7 4.3 42 130-171 108-168 (455)
151 3sc4_A Short chain dehydrogena 31.3 46 0.0016 26.5 3.9 43 126-168 19-64 (285)
152 3r1i_A Short-chain type dehydr 31.2 72 0.0025 25.3 5.1 40 125-168 41-80 (276)
153 3h7a_A Short chain dehydrogena 31.2 64 0.0022 25.1 4.8 39 126-168 17-55 (252)
154 1xq1_A Putative tropinone redu 30.9 87 0.003 24.0 5.4 39 124-166 22-60 (266)
155 2fn9_A Ribose ABC transporter, 30.9 53 0.0018 25.2 4.1 51 120-170 106-164 (290)
156 3f1l_A Uncharacterized oxidore 30.6 65 0.0022 24.9 4.7 38 125-166 21-58 (252)
157 3gaf_A 7-alpha-hydroxysteroid 30.1 76 0.0026 24.6 5.0 39 126-168 22-60 (256)
158 4gkb_A 3-oxoacyl-[acyl-carrier 30.0 89 0.003 25.1 5.5 28 125-152 16-43 (258)
159 3d02_A Putative LACI-type tran 29.9 1.2E+02 0.0041 23.2 6.1 41 128-168 112-157 (303)
160 3rkr_A Short chain oxidoreduct 29.8 96 0.0033 24.0 5.6 39 126-168 39-77 (262)
161 2ae2_A Protein (tropinone redu 29.7 98 0.0033 23.9 5.6 37 126-166 19-55 (260)
162 3n0w_A ABC branched chain amin 29.6 73 0.0025 25.6 4.9 44 127-170 128-172 (379)
163 4ibo_A Gluconate dehydrogenase 29.5 70 0.0024 25.3 4.7 39 126-168 36-74 (271)
164 2x7x_A Sensor protein; transfe 29.5 45 0.0015 26.5 3.6 49 120-170 109-161 (325)
165 3l6u_A ABC-type sugar transpor 29.4 31 0.0011 26.5 2.6 51 120-170 111-168 (293)
166 1yb1_A 17-beta-hydroxysteroid 29.4 93 0.0032 24.2 5.4 37 126-166 41-77 (272)
167 3td9_A Branched chain amino ac 29.4 86 0.003 24.9 5.3 43 128-171 135-181 (366)
168 1jx6_A LUXP protein; protein-l 29.1 91 0.0031 24.6 5.4 46 120-169 156-205 (342)
169 3u9l_A 3-oxoacyl-[acyl-carrier 29.0 94 0.0032 25.4 5.6 43 126-168 15-58 (324)
170 3sx2_A Putative 3-ketoacyl-(ac 28.9 97 0.0033 24.1 5.5 44 125-168 22-73 (278)
171 1weh_A Conserved hypothetical 28.9 75 0.0025 24.2 4.6 39 122-169 19-57 (171)
172 3sql_A Glycosyl hydrolase fami 28.8 38 0.0013 31.1 3.4 47 123-169 125-190 (535)
173 4iin_A 3-ketoacyl-acyl carrier 28.7 1E+02 0.0034 24.0 5.5 40 126-168 39-78 (271)
174 1gud_A ALBP, D-allose-binding 28.6 63 0.0022 25.0 4.3 49 119-170 112-166 (288)
175 2j4d_A Cryptochrome 3, cryptoc 28.5 60 0.0021 29.0 4.6 40 129-168 124-164 (525)
176 2yfo_A Alpha-galactosidase-suc 28.4 39 0.0013 31.7 3.5 40 132-171 351-408 (720)
177 3m9w_A D-xylose-binding peripl 28.3 83 0.0028 24.5 5.0 44 121-167 106-152 (313)
178 3qlj_A Short chain dehydrogena 28.2 90 0.0031 25.2 5.3 44 125-168 36-85 (322)
179 1id1_A Putative potassium chan 28.0 1.2E+02 0.0042 21.4 5.5 24 127-150 13-36 (153)
180 3ai3_A NADPH-sorbose reductase 27.7 99 0.0034 23.8 5.3 37 126-166 17-53 (263)
181 3svt_A Short-chain type dehydr 27.7 97 0.0033 24.2 5.3 39 125-167 20-58 (281)
182 4da9_A Short-chain dehydrogena 27.6 88 0.003 24.7 5.1 41 125-168 38-78 (280)
183 3r3s_A Oxidoreductase; structu 27.4 92 0.0032 24.8 5.2 41 126-168 59-99 (294)
184 1uas_A Alpha-galactosidase; TI 27.4 44 0.0015 28.2 3.3 51 121-171 24-90 (362)
185 3txv_A Probable tagatose 6-pho 27.4 1.2E+02 0.0041 27.3 6.3 47 121-167 105-162 (450)
186 2fiq_A Putative tagatose 6-pho 27.2 1.5E+02 0.0051 26.4 6.8 46 121-166 98-154 (420)
187 4fs3_A Enoyl-[acyl-carrier-pro 27.1 88 0.003 24.5 4.9 35 128-166 20-54 (256)
188 3afn_B Carbonyl reductase; alp 27.1 91 0.0031 23.5 4.9 25 125-149 16-40 (258)
189 2yxo_A Histidinol phosphatase; 27.0 90 0.0031 24.1 4.9 20 131-150 20-40 (267)
190 1xhl_A Short-chain dehydrogena 26.9 1.1E+02 0.0038 24.4 5.6 38 126-167 36-73 (297)
191 3i6i_A Putative leucoanthocyan 26.8 1.1E+02 0.0037 24.5 5.5 32 126-157 20-51 (346)
192 2b4q_A Rhamnolipids biosynthes 26.0 70 0.0024 25.3 4.2 27 124-150 37-63 (276)
193 2hvw_A Deoxycytidylate deamina 25.9 40 0.0014 26.5 2.6 36 132-171 136-171 (184)
194 2wq7_A RE11660P; lyase-DNA com 25.7 64 0.0022 29.0 4.2 43 129-171 113-156 (543)
195 2gfq_A UPF0204 protein PH0006; 25.6 88 0.003 26.6 4.9 39 132-171 252-293 (298)
196 1mxh_A Pteridine reductase 2; 25.5 1.2E+02 0.004 23.5 5.4 37 126-166 21-58 (276)
197 4do4_A Alpha-N-acetylgalactosa 25.5 80 0.0027 26.4 4.6 51 121-171 34-99 (400)
198 2fb6_A Conserved hypothetical 25.5 70 0.0024 23.0 3.7 51 121-171 18-74 (117)
199 2xn2_A Alpha-galactosidase; hy 25.4 61 0.0021 30.4 4.2 40 132-171 355-412 (732)
200 1xkq_A Short-chain reductase f 25.4 88 0.003 24.5 4.6 37 126-166 16-52 (280)
201 3t4x_A Oxidoreductase, short c 25.3 1.2E+02 0.004 23.6 5.3 39 125-167 19-57 (267)
202 3evt_A Phosphoglycerate dehydr 25.2 61 0.0021 27.3 3.8 24 127-150 147-170 (324)
203 3v8b_A Putative dehydrogenase, 25.2 91 0.0031 24.7 4.7 37 127-167 39-75 (283)
204 3is3_A 17BETA-hydroxysteroid d 25.2 1.2E+02 0.004 23.7 5.3 42 124-168 26-67 (270)
205 3imf_A Short chain dehydrogena 25.1 88 0.003 24.2 4.5 25 125-149 15-39 (257)
206 3pp8_A Glyoxylate/hydroxypyruv 25.1 63 0.0021 27.1 3.8 40 127-167 149-194 (315)
207 2nut_C Vesicle-trafficking pro 25.0 1.2E+02 0.0041 23.3 5.3 60 87-154 4-63 (196)
208 1iy8_A Levodione reductase; ox 25.0 91 0.0031 24.1 4.6 38 125-166 22-59 (267)
209 4dmm_A 3-oxoacyl-[acyl-carrier 24.9 1.2E+02 0.004 23.8 5.3 40 126-168 38-77 (269)
210 3o38_A Short chain dehydrogena 24.9 1.2E+02 0.0041 23.3 5.3 23 128-150 35-57 (266)
211 2a2l_A Unknown; structural gen 24.8 97 0.0033 23.2 4.5 33 120-152 12-46 (145)
212 1vl8_A Gluconate 5-dehydrogena 24.7 1.2E+02 0.004 23.7 5.3 25 125-149 30-54 (267)
213 1gz6_A Estradiol 17 beta-dehyd 24.7 1.3E+02 0.0043 24.6 5.6 44 125-168 18-66 (319)
214 3rih_A Short chain dehydrogena 24.6 74 0.0025 25.6 4.1 40 124-167 49-88 (293)
215 2oxn_A Beta-hexosaminidase; TI 24.5 1.2E+02 0.0042 25.8 5.7 48 122-169 91-155 (340)
216 3v2g_A 3-oxoacyl-[acyl-carrier 24.3 1.2E+02 0.0042 23.8 5.3 41 125-168 40-80 (271)
217 3lkb_A Probable branched-chain 24.3 84 0.0029 25.3 4.4 43 128-170 129-173 (392)
218 3uf0_A Short-chain dehydrogena 24.0 1.1E+02 0.0038 24.1 5.0 39 125-168 40-78 (273)
219 4hp8_A 2-deoxy-D-gluconate 3-d 24.0 1.2E+02 0.0041 24.6 5.3 40 124-169 17-56 (247)
220 3o26_A Salutaridine reductase; 23.9 1.3E+02 0.0043 23.3 5.3 25 126-150 22-46 (311)
221 3tox_A Short chain dehydrogena 23.9 79 0.0027 25.1 4.1 38 125-166 17-54 (280)
222 3cc1_A BH1870 protein, putativ 23.6 82 0.0028 27.4 4.4 52 120-171 26-110 (433)
223 3gem_A Short chain dehydrogena 23.5 88 0.003 24.5 4.3 26 126-151 37-62 (260)
224 3zyz_A Beta-D-glucoside glucoh 23.2 1.1E+02 0.0038 28.7 5.5 51 119-169 84-153 (713)
225 3e38_A Two-domain protein cont 23.1 71 0.0024 27.3 3.9 40 131-170 38-87 (343)
226 3qha_A Putative oxidoreductase 23.1 54 0.0018 26.4 3.0 26 127-152 25-50 (296)
227 2pnf_A 3-oxoacyl-[acyl-carrier 23.0 1.4E+02 0.0047 22.3 5.2 24 126-149 17-40 (248)
228 2jwk_A Protein TOLR; periplasm 23.0 1.4E+02 0.0049 18.5 6.0 22 147-170 53-74 (74)
229 1gee_A Glucose 1-dehydrogenase 22.8 1.6E+02 0.0054 22.3 5.6 39 125-166 16-54 (261)
230 8abp_A L-arabinose-binding pro 22.7 1.1E+02 0.0038 23.5 4.6 51 119-169 108-164 (306)
231 1qyc_A Phenylcoumaran benzylic 22.7 1.2E+02 0.0042 23.4 4.9 25 127-151 15-39 (308)
232 2yb1_A Amidohydrolase; HET: AM 22.6 1.1E+02 0.0036 24.9 4.7 38 131-171 21-59 (292)
233 3ues_A Alpha-1,3/4-fucosidase; 22.6 1E+02 0.0035 27.6 5.0 42 130-171 65-128 (478)
234 4dry_A 3-oxoacyl-[acyl-carrier 22.6 1.1E+02 0.0037 24.3 4.7 26 125-150 42-67 (281)
235 2hmt_A YUAA protein; RCK, KTN, 22.4 73 0.0025 21.6 3.2 23 127-149 16-38 (144)
236 3a5v_A Alpha-galactosidase; be 22.4 84 0.0029 27.1 4.2 51 121-171 24-90 (397)
237 3ckm_A YRAM (HI1655), LPOA; pe 22.3 66 0.0022 25.7 3.3 43 128-171 111-155 (327)
238 1g0o_A Trihydroxynaphthalene r 22.1 1.6E+02 0.0054 23.0 5.5 26 125-150 38-63 (283)
239 2g1u_A Hypothetical protein TM 22.0 80 0.0027 22.5 3.5 24 127-150 29-52 (155)
240 3qc0_A Sugar isomerase; TIM ba 22.0 2.1E+02 0.0071 21.6 6.1 49 123-171 79-139 (275)
241 1ja9_A 4HNR, 1,3,6,8-tetrahydr 22.0 1.6E+02 0.0054 22.4 5.4 25 124-148 29-53 (274)
242 2c07_A 3-oxoacyl-(acyl-carrier 21.9 1.1E+02 0.0037 24.0 4.5 24 126-149 54-77 (285)
243 4egf_A L-xylulose reductase; s 21.8 1.5E+02 0.005 23.1 5.3 39 124-166 28-66 (266)
244 3umv_A Deoxyribodipyrimidine p 21.7 92 0.0031 28.0 4.5 39 133-171 122-163 (506)
245 3ewb_X 2-isopropylmalate synth 21.7 1.2E+02 0.0041 25.0 4.9 35 132-166 155-190 (293)
246 1lss_A TRK system potassium up 21.6 89 0.0031 21.1 3.5 23 127-149 14-36 (140)
247 3fpw_A HBPS, extracellular HAE 21.6 1.1E+02 0.0039 24.3 4.5 35 118-152 63-99 (192)
248 2hq1_A Glucose/ribitol dehydro 21.6 1.3E+02 0.0046 22.5 4.9 24 126-149 15-39 (247)
249 1hjs_A Beta-1,4-galactanase; 4 21.6 1.3E+02 0.0043 25.2 5.1 39 133-171 33-76 (332)
250 2pi1_A D-lactate dehydrogenase 21.6 71 0.0024 26.9 3.5 24 127-150 151-174 (334)
251 3hg7_A D-isomer specific 2-hyd 21.5 72 0.0025 26.9 3.5 24 127-150 150-173 (324)
252 3lf2_A Short chain oxidoreduct 21.5 1.7E+02 0.0058 22.6 5.6 37 126-166 18-54 (265)
253 2x9g_A PTR1, pteridine reducta 21.4 1.5E+02 0.0052 23.2 5.3 37 126-165 33-69 (288)
254 3ijr_A Oxidoreductase, short c 21.4 1.4E+02 0.0049 23.6 5.2 25 126-150 57-81 (291)
255 1xdw_A NAD+-dependent (R)-2-hy 21.3 79 0.0027 26.4 3.7 25 127-151 156-180 (331)
256 3doj_A AT3G25530, dehydrogenas 21.3 76 0.0026 25.7 3.6 25 127-151 31-55 (310)
257 3gvx_A Glycerate dehydrogenase 21.3 70 0.0024 26.5 3.4 25 127-151 132-156 (290)
258 3kvo_A Hydroxysteroid dehydrog 21.3 1E+02 0.0035 25.6 4.5 45 124-168 53-100 (346)
259 4g2n_A D-isomer specific 2-hyd 21.2 67 0.0023 27.4 3.3 24 127-150 183-206 (345)
260 3uw2_A Phosphoglucomutase/phos 21.2 2.1E+02 0.0071 25.4 6.6 50 119-171 40-93 (485)
261 2csu_A 457AA long hypothetical 21.1 85 0.0029 27.5 4.1 43 128-170 76-123 (457)
262 3lmz_A Putative sugar isomeras 21.1 1.7E+02 0.0057 22.4 5.4 42 130-171 33-77 (257)
263 4imr_A 3-oxoacyl-(acyl-carrier 21.0 1E+02 0.0034 24.4 4.2 27 125-151 42-68 (275)
264 1szn_A Alpha-galactosidase; (b 20.9 88 0.003 27.2 4.1 51 121-171 27-93 (417)
265 1sb8_A WBPP; epimerase, 4-epim 20.8 92 0.0032 24.9 3.9 35 126-160 37-71 (352)
266 2xry_A Deoxyribodipyrimidine p 20.8 99 0.0034 27.1 4.4 40 129-171 116-156 (482)
267 1p5d_X PMM, phosphomannomutase 20.7 2E+02 0.0069 24.9 6.4 50 119-171 26-79 (463)
268 1vq2_A DCMP deaminase, deoxycy 20.6 45 0.0015 25.9 1.9 35 133-171 136-171 (193)
269 2e0i_A 432AA long hypothetical 20.6 79 0.0027 27.7 3.7 32 140-171 89-121 (440)
270 2zko_A NS1, NS1A, non-structur 20.5 75 0.0026 21.7 2.8 20 119-138 54-73 (73)
271 3o21_A Glutamate receptor 3; p 20.5 1.3E+02 0.0046 24.6 5.0 40 128-170 117-159 (389)
272 3ioy_A Short-chain dehydrogena 20.4 1.6E+02 0.0055 23.8 5.4 37 127-167 19-55 (319)
273 1dxy_A D-2-hydroxyisocaproate 20.3 85 0.0029 26.2 3.7 25 127-151 155-179 (333)
274 1w6u_A 2,4-dienoyl-COA reducta 20.3 1.3E+02 0.0043 23.5 4.6 26 125-150 35-60 (302)
275 3vni_A Xylose isomerase domain 20.2 1.5E+02 0.0052 22.9 5.0 41 131-171 21-63 (294)
276 3qsg_A NAD-binding phosphogluc 20.2 1.2E+02 0.0042 24.6 4.6 23 127-149 34-57 (312)
277 2z1n_A Dehydrogenase; reductas 20.1 1.8E+02 0.0061 22.3 5.4 25 125-149 16-40 (260)
278 3e03_A Short chain dehydrogena 20.1 1.2E+02 0.0041 23.7 4.4 26 126-151 16-41 (274)
279 1yxm_A Pecra, peroxisomal tran 20.1 1.8E+02 0.0061 22.7 5.5 37 125-165 27-63 (303)
No 1
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=4.7e-57 Score=362.11 Aligned_cols=160 Identities=72% Similarity=1.044 Sum_probs=115.6
Q ss_pred hhhhhhccccceeccccc-eecccCCCCCCCCceeEEEeccCCCCcHHHHHHHHHHhhhhhcCCCCCceEEEEeeCCcEE
Q 030804 10 MLNQSSFLGSCQQLSSVS-KLVASRRPRPAPPSLFIVEASTRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLY 88 (171)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~a~~~~~~r~~~r~~R~~RirkKi~gt~~rPRL~V~rSnkhiy 88 (171)
|+++++|+++|.|.+++. .++++++|.|.+. +++++|.. .++|++.|++||+|+|+|+.||.++|||+||+||+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~k~~~R~rR~~RiR~ki~gt~~rPRL~V~rSnkhIy 78 (161)
T 3bbo_Q 1 MCASLSFLQSAFASSQQLPLLPKFAAAKPLLP-SFPIIEAK-AKTRREDRTARHVRIRKKVEGTPERPRLCVFRSNKHLY 78 (161)
T ss_dssp ----------------------------------------C-CCCCCCCGGGTSCCSCSGGGGSSSCCCCEEEECSSCEE
T ss_pred CCcchhHHHHhhccccccccccccCCCCCCCC-ceeeEeec-cCchHHHHHHHHHHHHHhhccCCCCCEEEEEecCCeEE
Confidence 467899999999855552 5666666666655 67777731 57888889999999999999999999999999999999
Q ss_pred EEEEeCCCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 89 VQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 89 AQvIdd~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
||||||.+|+||++|||+|++++.++++++++|+++|+.||++||+||+|+||++|+||||||+|||||+||+|++||+|
T Consensus 79 AQvIdd~~g~tLasASTlek~lk~~l~~g~~~n~~AA~~VG~liAeRA~e~GI~~VvFDRgg~~YhGRVkAladaaRe~G 158 (161)
T 3bbo_Q 79 VQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIASACLEKGITKVAFDRGGYPYHGRVKALADAAREKG 158 (161)
T ss_dssp EEEECCTTSCEEEEEEHHHHHHHHCCTTCCSSSHHHHHHHHHHSSSHHHHTSSCCCCCCCSSSCSSSTTHHHHHHHTTTT
T ss_pred EEEEECCCCEEEEEEeCCcHHHHhhccccCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHhC
Confidence 99999999999999999999999776434689999999999999999999999999999999999999999999999999
Q ss_pred CcC
Q 030804 169 LQF 171 (171)
Q Consensus 169 L~f 171 (171)
|+|
T Consensus 159 L~F 161 (161)
T 3bbo_Q 159 LQF 161 (161)
T ss_dssp CCC
T ss_pred CcC
Confidence 998
No 2
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=100.00 E-value=1.7e-47 Score=292.54 Aligned_cols=115 Identities=46% Similarity=0.728 Sum_probs=110.2
Q ss_pred cHHHHHHHHHHhhhhhcCCCCCceEEEEeeCCcEEEEEEeCCCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHHHH
Q 030804 54 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEMIA 133 (171)
Q Consensus 54 r~~~r~~R~~RirkKi~gt~~rPRL~V~rSnkhiyAQvIdd~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~LA 133 (171)
|++.|++||+|+|+||.| +++|||+||+||+|||||||||.+|+||+||||+|++++..+ .+++|++||+.||++||
T Consensus 2 ~~~~r~~r~~r~R~ki~~-~~rpRL~V~rSnkhIyAQiidd~~g~tlasAST~e~~~~~~~--~~~~n~~AA~~vG~llA 78 (116)
T 3r8s_O 2 KKSARIRRATRARRKLQE-LGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQL--KYTGNKDAAAAVGKAVA 78 (116)
T ss_dssp HHHHHHHHHHHHHHHHHT-TTCCEEEEEECSSCEEEEEECTTSSCEEEECCSSSHHHHTTC--SCSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcc-CCCCEEEEEEeCCEEEEEEEEcCCCeEEEEEeeCchhhcccc--CCCCCHHHHHHHHHHHH
Confidence 577899999999999999 799999999999999999999999999999999999988765 36789999999999999
Q ss_pred HHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCCcC
Q 030804 134 KSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 134 kra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL~f 171 (171)
+||+++||++|+||||||+|||||+||+|++||+||+|
T Consensus 79 ~Ral~~GI~~vvfDrgg~~yhGrV~Ala~~are~Gl~f 116 (116)
T 3r8s_O 79 ERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 116 (116)
T ss_dssp HHHHTTTCCCCEEECTTSCSSSHHHHHHHHHHHTTCCC
T ss_pred HHHHHCCCCEEEEecCCCcccHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999998
No 3
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=100.00 E-value=5e-47 Score=288.66 Aligned_cols=110 Identities=49% Similarity=0.760 Sum_probs=105.8
Q ss_pred cHHHHHHHHHHhhhhhcCCCCCceEEEEeeCCcEEEEEEeCCCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHHHH
Q 030804 54 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEMIA 133 (171)
Q Consensus 54 r~~~r~~R~~RirkKi~gt~~rPRL~V~rSnkhiyAQvIdd~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~LA 133 (171)
|++.|++||+|+|+||.||+ +|||+||+||+|||||||||.+|+||+||||+|++++ ++|++||+.||++||
T Consensus 3 ~~~~r~~r~~r~r~ki~gt~-rpRL~V~rSnkhiyAQiidd~~~~tlasAsT~e~~~k-------~~n~~AA~~vG~llA 74 (112)
T 3v2d_S 3 RLTAYERRKFRVRNRIKRTG-RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK-------GNKTEVARQVGRALA 74 (112)
T ss_dssp CCCHHHHHHHHHHHHHHHTC-CCEEEEEECSSCEEEEEEETTTTEEEEEEETTTTTCC-------CCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCC-CCEEEEEEeCCeEEEEEEecCCCeEEEEEEecchhcc-------CCCHHHHHHHHHHHH
Confidence 56688999999999999998 9999999999999999999999999999999999874 569999999999999
Q ss_pred HHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCCcC
Q 030804 134 KSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 134 kra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL~f 171 (171)
+||+++||++|+||||||+|||||+||+|++||+||+|
T Consensus 75 ~ra~~~GI~~vvfDrgg~~yhGrV~Ala~~are~GL~f 112 (112)
T 3v2d_S 75 EKALALGIKQVAFDRGPYKYHGRVKALAEGAREGGLEF 112 (112)
T ss_dssp HHHHTTTCCBCEEECTTSCSCSSTTHHHHHHHHTTCBC
T ss_pred HHHHHCCCCEEEEecCCCcccHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999998
No 4
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=100.00 E-value=5.5e-47 Score=291.33 Aligned_cols=115 Identities=64% Similarity=0.975 Sum_probs=94.1
Q ss_pred CcHHHHHHHHHHhhhhhcCCCCCceEEEEeeCCcEEEEEEeCCCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHHH
Q 030804 53 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEMI 132 (171)
Q Consensus 53 ~r~~~r~~R~~RirkKi~gt~~rPRL~V~rSnkhiyAQvIdd~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~L 132 (171)
+|++.|.+||+|+|+|+.||+++|||+||+||+|||||||||.+|+||+||||+|++++ + .+++|++||+.||++|
T Consensus 6 ~~~~~r~~r~~R~r~ki~gt~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~~~~--~--~~~~n~~AA~~vG~ll 81 (120)
T 1ovy_A 6 DRNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFG--L--DSTNNIEAAKKVGELV 81 (120)
T ss_dssp ------------------CCSSCCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTC--S--SCTTSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEecCchhhC--c--CCCCcHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999987 3 3678999999999999
Q ss_pred HHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCCcC
Q 030804 133 AKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 133 Akra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL~f 171 (171)
|+||+|+||++|+||||||+|||||+||+|++||+||+|
T Consensus 82 A~Ral~~GI~~vvfDrgg~~yhgrV~ala~~are~GL~f 120 (120)
T 1ovy_A 82 AKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120 (120)
T ss_dssp HHHHHHHSSSCCCCCSTTCSSCSSTHHHHHHHHHHHCCC
T ss_pred HHHHHHCCCCEEEEecCCccccHHHHHHHHHHHHhCCcC
Confidence 999999999999999999999999999999999999998
No 5
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=100.00 E-value=4.7e-45 Score=278.54 Aligned_cols=109 Identities=49% Similarity=0.788 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhhhhhcCC---CCCceEEEEeeCCcEEEEEEeCCCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHH
Q 030804 55 REDRTARHSRIRKKIDGT---PERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEM 131 (171)
Q Consensus 55 ~~~r~~R~~RirkKi~gt---~~rPRL~V~rSnkhiyAQvIdd~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~ 131 (171)
.++|++||+|+|+|+.|| +++|||+||+||+|||||||||.+|+||+||||+| + . +++|++||+.||++
T Consensus 3 ~~~r~~r~~r~r~ki~gt~~~~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAST~e--l-~-----~~~n~~AA~~vG~l 74 (114)
T 2zjr_L 3 TATTIRRKLRTRRKVRTTTAASGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAA--L-K-----SGNKTDTAAAVGKA 74 (114)
T ss_dssp -----CHHHHHHHHHHSCSTTTCSEEECCCTTSSCCCCCEEETTTTEECCCCCSCS--C-C-----TTCSSSSHHHHHHH
T ss_pred hHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEEchH--h-c-----CCCCHHHHHHHHHH
Confidence 357889999999999999 99999999999999999999999999999999999 3 1 46799999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCCcC
Q 030804 132 IAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 132 LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL~f 171 (171)
||+||+++||++|+||||||+|||||+||+|++||+||+|
T Consensus 75 lA~Ral~~GI~~vvfDrgg~~yhgrV~Ala~~are~GL~f 114 (114)
T 2zjr_L 75 LAAAAAEKGIKQVVFDRGSYKYHGRVKALADAAREGGLDF 114 (114)
T ss_dssp HHHHHHTTCCCCCEECCCSSCSCSHHHHHHHHHHHHC---
T ss_pred HHHHHHHCCCCEEEEecCCccccHHHHHHHHHHHHhCCcC
Confidence 9999999999999999999999999999999999999998
No 6
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=100.00 E-value=1.2e-36 Score=248.92 Aligned_cols=113 Identities=26% Similarity=0.348 Sum_probs=101.0
Q ss_pred cHHHHHHHHHHhhhhhcCCCCCceEEEEeeCCcEEEEEE--eCCCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHH
Q 030804 54 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVI--DDTKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEM 131 (171)
Q Consensus 54 r~~~r~~R~~RirkKi~gt~~rPRL~V~rSnkhiyAQvI--dd~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~ 131 (171)
|+|-+.-.+.|+|..+ +++|||+||+||+||||||| ||.+|+||+||||+|++ +.+|+ .+++|++||+.||++
T Consensus 14 rregkTdy~~R~rl~~---~~rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~-k~~~k-~~~~N~~AA~~vG~l 88 (187)
T 1vq8_N 14 RREARTDYHQRLRLLK---SGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLA-EYGWE-APTGNMPSAYLTGLL 88 (187)
T ss_dssp HHTTCCCHHHHHHHHT---TCSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGG-GGTCC-SCSSSHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHh---cCCCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchh-ccccc-cCCCcHHHHHHHHHH
Confidence 3444444566666655 57999999999999999999 99999999999999999 77763 357899999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCchh--hHHHHHHHHHHHcCCcC
Q 030804 132 IAKSCLEKGITKVAFDRGGYPYH--GRIQALADAAREYGLQF 171 (171)
Q Consensus 132 LAkra~e~GI~~VvfDRgg~~Yh--GrVkAlad~aRe~GL~f 171 (171)
||+||+++||++|+||||||+|| |||+||+|++||+||+|
T Consensus 89 lA~Ral~kGI~~vvfDrgg~~yh~GgRV~Ala~gAre~GL~f 130 (187)
T 1vq8_N 89 AGLRAQEAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDI 130 (187)
T ss_dssp HHHHHHHTTCCBCEEECTTSCCCTTCHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHCCCCEEEEcCCCceeccchHHHHHHHHhhcCCEec
Confidence 99999999999999999999999 99999999999999997
No 7
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.6e-36 Score=250.81 Aligned_cols=115 Identities=25% Similarity=0.274 Sum_probs=104.0
Q ss_pred CcHHHHHHHHHHhhhhhcCCCCCceEEEEeeCCcEEEEEEe--CCCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHH
Q 030804 53 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVID--DTKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGE 130 (171)
Q Consensus 53 ~r~~~r~~R~~RirkKi~gt~~rPRL~V~rSnkhiyAQvId--d~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~ 130 (171)
.|+|.+..++.|+|..+.+ +|||+||+||+|||||||| |.+|+||+||||+|++++.+|. .+++|++||+.||+
T Consensus 13 rRregkt~y~~R~rl~~~~---kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~-~~~~N~~AA~~vG~ 88 (203)
T 3j21_O 13 RRREGKTNYRKRLKLLKSG---KPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWK-GHCGNTPSAYLLGL 88 (203)
T ss_dssp HHHHTCCCHHHHHHHHTTC---CCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCC-SCTTSHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHhcC---CCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhccc-CCCCcHHHHHHHHH
Confidence 4556666788888887754 9999999999999999998 8889999999999999876653 46789999999999
Q ss_pred HHHHHHHHcCCCEEEEecCCCch--hhHHHHHHHHHHHcCCcC
Q 030804 131 MIAKSCLEKGITKVAFDRGGYPY--HGRIQALADAAREYGLQF 171 (171)
Q Consensus 131 ~LAkra~e~GI~~VvfDRgg~~Y--hGrVkAlad~aRe~GL~f 171 (171)
+||+||+++||++|+|||||++| ||||+||+|++||+||+|
T Consensus 89 llA~Ral~kGI~~vvfDrgg~~y~~hgRV~Ala~gAre~GL~i 131 (203)
T 3j21_O 89 LIGYKAKQAGIEEAILDIGLHPPVRGSSVFAVLKGAVDAGLNV 131 (203)
T ss_dssp HSSSSTTSSCCCCCEEECCSSCCCTTSHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCCEEEEecCcceeccCcchhhhhhhcccCCeec
Confidence 99999999999999999999999 899999999999999987
No 8
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.96 E-value=8.5e-29 Score=213.54 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=90.6
Q ss_pred CCceEEEEeeCCcEEEEEEeCC--CCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHHHHHHHHHc------------
Q 030804 74 ERPRLCVFRSNKHLYVQVIDDT--KMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEMIAKSCLEK------------ 139 (171)
Q Consensus 74 ~rPRL~V~rSnkhiyAQvIdd~--~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~LAkra~e~------------ 139 (171)
.+|||+||+||+|||||||||. +|+||++|||+|++ +.+|. ..++|.+||+.+|.+||+|++++
T Consensus 47 ~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~-kyg~k-~g~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~e 124 (297)
T 2zkr_n 47 PKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELP-KYGVK-VGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVE 124 (297)
T ss_dssp CSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGG-GTCCC-SCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCS
T ss_pred CCceEEEEEecCcEEEEEEeccCCCCEEEEEeecCccc-ccccc-cCCCcHHHHHHHHHHHHHHHHHhhccchhhcCccc
Confidence 5799999999999999999987 99999999999998 76664 35789999999999999999999
Q ss_pred ---------------CCCEEEEecCCCch--hhHHHHHHHHHHHcCCcC
Q 030804 140 ---------------GITKVAFDRGGYPY--HGRIQALADAAREYGLQF 171 (171)
Q Consensus 140 ---------------GI~~VvfDRgg~~Y--hGrVkAlad~aRe~GL~f 171 (171)
||.+|+||||+++| ||||+|+++++||+||+|
T Consensus 125 ~~g~~~~ve~~~~~~gi~~vvfDrGl~ryttggRVfa~akGArDgGL~~ 173 (297)
T 2zkr_n 125 VTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSI 173 (297)
T ss_dssp SSSCCCCCSSSCSSSCCCBEEEECTTSCCCTTCHHHHHHHHHHHTTCBC
T ss_pred cccccccccccccCCCceEEEEecCCcccCCCchHHHHHHHHHhcCccc
Confidence 99999999999999 999999999999999987
No 9
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=99.92 E-value=2.6e-25 Score=191.95 Aligned_cols=97 Identities=26% Similarity=0.283 Sum_probs=88.8
Q ss_pred CCCceEEEEeeCCcEEEEEEeC--CCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHHHHHHHHHc--------CCC
Q 030804 73 PERPRLCVFRSNKHLYVQVIDD--TKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEMIAKSCLEK--------GIT 142 (171)
Q Consensus 73 ~~rPRL~V~rSnkhiyAQvIdd--~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~LAkra~e~--------GI~ 142 (171)
+.+|||+||+||+||||||||| .+|+||+||||+|++ +.+|. ..++|++||+.||.+||+||+++ |++
T Consensus 46 t~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~-k~g~k-~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~ 123 (297)
T 3u5e_D 46 TPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELP-RYGIT-HGLTNWAAAYATGLLIARRTLQKLGLDETYKGVE 123 (297)
T ss_dssp CCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGGG-GGTCC-SCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCS
T ss_pred CCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeecchh-hcccC-CCCCcHHHHHHHHHHHHHHHHHhhCCcccccCcc
Confidence 4699999999999999999998 689999999999998 34453 35789999999999999999999 998
Q ss_pred E-------------------EEEecCCCch--hhHHHHHHHHHHHcCCcC
Q 030804 143 K-------------------VAFDRGGYPY--HGRIQALADAAREYGLQF 171 (171)
Q Consensus 143 ~-------------------VvfDRgg~~Y--hGrVkAlad~aRe~GL~f 171 (171)
+ ++||+|+.++ |+||++++++++|+||++
T Consensus 124 e~~g~~~~ve~~~~~~~~f~~~LDvGl~rtttG~RVfaalKGA~DgGL~I 173 (297)
T 3u5e_D 124 EVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYV 173 (297)
T ss_dssp SCCCCCCCCCCCSSSCCCCBCEEECTTCCCCTTCSHHHHHHHHHHHTCBC
T ss_pred ccccceeccccccCCCCceeEEEecCCCccCccceehhhhhcccccCccc
Confidence 8 9999999999 999999999999999974
No 10
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=99.92 E-value=2.4e-25 Score=192.42 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=88.0
Q ss_pred CCCceEEEEeeCCcEEEEEEeC--CCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHHHHHHHHHc--------CCC
Q 030804 73 PERPRLCVFRSNKHLYVQVIDD--TKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEMIAKSCLEK--------GIT 142 (171)
Q Consensus 73 ~~rPRL~V~rSnkhiyAQvIdd--~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~LAkra~e~--------GI~ 142 (171)
+.+|||+||+||+||||||||| .+|+||+||||+|++. .+|. ..++|++||+.||.+||+||+++ |++
T Consensus 46 spkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~~-~g~k-~~~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~ 123 (301)
T 4a17_M 46 TPKYRLVARATNTRIIAQIVYATLKCDRVLCAADSYELKR-FGVS-TGLASYAAAYATGLLLARRLLKQIGLDTVYAGQT 123 (301)
T ss_dssp CCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHHHH-TTCC-SCTTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCS
T ss_pred CCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccchh-cccc-CCCCcHHHHHHHHHHHHHHHHHhcCCcccccCcc
Confidence 4589999999999999999998 6889999999999973 4443 35789999999999999999999 998
Q ss_pred -------------------EEEEecCCCch--hhHHHHHHHHHHHcCCcC
Q 030804 143 -------------------KVAFDRGGYPY--HGRIQALADAAREYGLQF 171 (171)
Q Consensus 143 -------------------~VvfDRgg~~Y--hGrVkAlad~aRe~GL~f 171 (171)
+++||+|+.++ |+||++++++++|+||++
T Consensus 124 e~~g~~~~ve~~~~~~~~f~~~LD~Gl~rtt~G~RVfaalKGA~DgGL~I 173 (301)
T 4a17_M 124 KVDGAYFNVDEDQKEKKPFKAILDAGLVRTTTGNRVFGVLKGACDGGINI 173 (301)
T ss_dssp SCCCSCCCGGGTCCSSCCCBCEEECTTSCCCSSCHHHHHHHHHHHTTCBC
T ss_pred ccccceeecccccCCCCceEEEEecCCcccCcccchhhhhhcccccCccc
Confidence 69999999999 999999999999999974
No 11
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=99.85 E-value=1.1e-21 Score=169.62 Aligned_cols=93 Identities=19% Similarity=0.221 Sum_probs=84.9
Q ss_pred CCceEEEEeeCCcEEEEEEeC--CCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHHHHHHHHHc--------CCCE
Q 030804 74 ERPRLCVFRSNKHLYVQVIDD--TKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEMIAKSCLEK--------GITK 143 (171)
Q Consensus 74 ~rPRL~V~rSnkhiyAQvIdd--~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~LAkra~e~--------GI~~ 143 (171)
.+|||+ ||+||||||||+ .+++||++|||+|++. .+|. ..++|.+||+.||.+||+||+++ |+++
T Consensus 51 pKpRLV---SNrhIyaQII~~~i~GD~tLaSAsS~EL~k-yG~k-~g~~N~aAAy~tGlLiA~RAl~k~~ld~~y~G~~e 125 (304)
T 3iz5_Q 51 PKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPR-YGLE-VGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVE 125 (304)
T ss_dssp CCSSSS---CSSCCEEEEEEEETTEEEEEEEEETTTGGG-GSCC-SCTTSHHHHHHHHHHHHHHHHTTCSSCCCCCSSSC
T ss_pred CCceee---cCCcEEEEEEecCCCCCEEEEEEecCchhh-cccC-CCCCcHHHHHHHHHHHHHHHHHhhCCccccCCccc
Confidence 479999 999999999998 5779999999999984 4564 36789999999999999999999 9998
Q ss_pred ------------------EEEecCCCchh--hHHHHHHHHHHHcCCcC
Q 030804 144 ------------------VAFDRGGYPYH--GRIQALADAAREYGLQF 171 (171)
Q Consensus 144 ------------------VvfDRgg~~Yh--GrVkAlad~aRe~GL~f 171 (171)
++||+|+.+++ +||++++++++++||++
T Consensus 126 ~~g~~~~ve~~~~~~~f~~~LDiGL~rtttG~RVfaalKGA~DgGL~I 173 (304)
T 3iz5_Q 126 ATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDI 173 (304)
T ss_dssp CCSCCCSSCCSSCSCCCSCEEECTTCCCCSSCHHHHHHHHHHTTTCCC
T ss_pred cccceecccccCCCCCceEEEecCCcccccCceeEEeeccccccCccc
Confidence 99999999997 99999999999999974
No 12
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=97.63 E-value=0.00051 Score=52.83 Aligned_cols=90 Identities=20% Similarity=0.161 Sum_probs=71.0
Q ss_pred CCCceEEEEeeCCcEEEEEEeCCCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHHHHHHHHHcCCCEE-EEecCCC
Q 030804 73 PERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEMIAKSCLEKGITKV-AFDRGGY 151 (171)
Q Consensus 73 ~~rPRL~V~rSnkhiyAQvIdd~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~LAkra~e~GI~~V-vfDRgg~ 151 (171)
-..+.+.|+.|-++..+.|.| .+|.+++..|+-...++.. ..++-.||..+++.++++|+|.||+.| ++=+|.
T Consensus 14 ~~~gi~hI~as~NNTivtiTd-~~G~~~~~~SaG~~gfKg~----rk~tp~AA~~aa~~~~~~~~~~Gi~~v~V~vkG~- 87 (129)
T 2vqe_K 14 VASGRAYIHASYNNTIVTITD-PDGNPITWSSGGVIGYKGS----RKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGT- 87 (129)
T ss_dssp CSEEEEEEEECSSCEEEEEEC-TTSCEEEECCTTTTTCCSG----GGGSHHHHHHHHHHHHHHHHTTTCCEEEEEEESC-
T ss_pred ccceEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEcCC----CcCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECC-
Confidence 357899999999999999986 5667888888888777765 346789999999999999999999988 444542
Q ss_pred chhhHHHHHHHHHHHcCCc
Q 030804 152 PYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 152 ~YhGrVkAlad~aRe~GL~ 170 (171)
- -|| +++..+|...||+
T Consensus 88 G-~Gr-e~airaL~~~Gl~ 104 (129)
T 2vqe_K 88 G-AGR-EQAIRALQASGLQ 104 (129)
T ss_dssp C-TTH-HHHHHHHHTSSSE
T ss_pred C-CCH-HHHHHHHHHCCCE
Confidence 1 244 4667777778876
No 13
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.43 E-value=0.0013 Score=51.10 Aligned_cols=93 Identities=22% Similarity=0.174 Sum_probs=69.4
Q ss_pred CCceEEEEeeCCcEEEEEEeCCCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHHHHHHHHHcCCCEE-EEecC--C
Q 030804 74 ERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEMIAKSCLEKGITKV-AFDRG--G 150 (171)
Q Consensus 74 ~rPRL~V~rSnkhiyAQvIdd~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~LAkra~e~GI~~V-vfDRg--g 150 (171)
....+.||-|-++..+.|.|..+..+|+.+|.-...++.. ..++--||...++.++++|+|.||+.| ++=+| |
T Consensus 13 ~~gi~hI~asfNNTivtiTD~~G~~~i~~~S~G~~gfkg~----~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~gg 88 (137)
T 3j20_M 13 KWGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADR----DEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGG 88 (137)
T ss_dssp EEEEEEEEECSSCEEEEEEESSSCSEEEEEEGGGTCSCTT----TSSSHHHHHHHHHHHHHHHHHHTEEEEEEEEECCCS
T ss_pred cceEEEEEcCCCCEEEEEEcCCCCEEEEEEccceeeecCC----ccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC
Confidence 4568999999999999999877667998888877766543 345778999999999999999999988 44454 3
Q ss_pred Cc----hhhHHHHHHHHHHHcCCcC
Q 030804 151 YP----YHGRIQALADAAREYGLQF 171 (171)
Q Consensus 151 ~~----YhGrVkAlad~aRe~GL~f 171 (171)
.+ --||- +++.+|...||++
T Consensus 89 ~~~~~pG~Gre-sairaL~~~Gl~I 112 (137)
T 3j20_M 89 SKSKTPGPGAQ-AAIRALARAGLKI 112 (137)
T ss_dssp SSCCSCCTHHH-HHHHHHHHHTCEE
T ss_pred CCCcCCCCcHH-HHHHHHHhCCCEE
Confidence 32 13553 3455666678763
No 14
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=97.40 E-value=0.00042 Score=54.12 Aligned_cols=90 Identities=19% Similarity=0.173 Sum_probs=70.2
Q ss_pred CCCceEEEEeeCCcEEEEEEeCCCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHHHHHHHHHcCCCEE-EEecCCC
Q 030804 73 PERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEMIAKSCLEKGITKV-AFDRGGY 151 (171)
Q Consensus 73 ~~rPRL~V~rSnkhiyAQvIdd~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~LAkra~e~GI~~V-vfDRgg~ 151 (171)
-..+.+.|+.|-++..+.|.| .+|.+++..|+-...++.. ..++-.||..+++.++++|+|.||+.| ++=+|.
T Consensus 27 ~~~gi~hI~as~NNTivtiTD-~~G~~i~~~SaG~~GfKg~----rksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~- 100 (140)
T 3bbn_K 27 IPKGVIHVQASFNNTIVTVTD-VRGRVVSWASAGTCGFRGT----KRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGP- 100 (140)
T ss_dssp CCCCEEEEEECSSCEEEEEEC-SSSCEEEEEETTTSSCCTT----SCSSHHHHHHHHTSGGGTSTTTCCCEEEEEEESC-
T ss_pred ceeeEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEccc----ccCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECC-
Confidence 357899999999999999986 5667888888887778764 356789999999999999999999988 444542
Q ss_pred chhhHHHHHHHHHHHcCCc
Q 030804 152 PYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 152 ~YhGrVkAlad~aRe~GL~ 170 (171)
- -|| +++..+|...||+
T Consensus 101 G-~GR-eaairaL~~~Gl~ 117 (140)
T 3bbn_K 101 G-LGR-DAALRAIRRSGIL 117 (140)
T ss_dssp S-TTS-SHHHHHHHTTTCE
T ss_pred C-CcH-HHHHHHHHHCCCE
Confidence 1 133 3556677777875
No 15
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=97.16 E-value=0.0018 Score=49.01 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=64.3
Q ss_pred CceEEEEeeCCcEEEEEEeCCCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEE-EecCCCch
Q 030804 75 RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVA-FDRGGYPY 153 (171)
Q Consensus 75 rPRL~V~rSnkhiyAQvIdd~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~LAkra~e~GI~~Vv-fDRgg~~Y 153 (171)
.--+.|+-|-++..+.|.| .+|.+|+.+|+-...+|.. ..++-.||...++.++++|+|.||+.|. +=+|. -.
T Consensus 6 ~gi~hI~as~NNTivtiTD-~~G~~i~~~S~G~~gfKg~----rk~tp~AA~~aa~~~~~~~~~~Gi~~v~v~vkG~-G~ 79 (117)
T 3r8n_K 6 DGVAHIHASFNNTIVTITD-RQGNALGWATAGGSGFRGS----RKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGP-GP 79 (117)
T ss_dssp EEEEEEEECSSCEEEEEEC-TTSCCSEEEETGGGSCCGG----GGSSHHHHHHHHHHHHHHHTTSCCCEEEEEEECS-SS
T ss_pred eeEEEEEcccCCEEEEEEc-CCCCEEEEEcCCccccCCC----ccCCHHHHHHHHHHHHHHHHHhCCcEEEEEEeCC-Cc
Confidence 3467899999999999986 4555888888877777765 2457789999999999999999999883 33442 11
Q ss_pred hhHHHHHHHHHHHcCCc
Q 030804 154 HGRIQALADAAREYGLQ 170 (171)
Q Consensus 154 hGrVkAlad~aRe~GL~ 170 (171)
|| +++..+|...||+
T Consensus 80 -Gr-~~airaL~~~Gl~ 94 (117)
T 3r8n_K 80 -GR-ESTIRALNAAGFR 94 (117)
T ss_dssp -ST-THHHHHHHHTTCE
T ss_pred -cH-HHHHHHHHhCCCE
Confidence 22 2344455567775
No 16
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=96.85 E-value=0.0033 Score=49.57 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=66.1
Q ss_pred CceEEEEeeCCcEEEEEEeCCCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHHHHHHHHHcCCCEE-EEecC--CC
Q 030804 75 RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEMIAKSCLEKGITKV-AFDRG--GY 151 (171)
Q Consensus 75 rPRL~V~rSnkhiyAQvIdd~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~LAkra~e~GI~~V-vfDRg--g~ 151 (171)
...+.|+-|-++..+.|.|..+..++..+|.-.. ++.. ...++--||...++.++++|+|.||+.| ++=+| |.
T Consensus 28 ~gi~hI~asfNNTiVtiTD~~G~~~~~~ssgg~~-~k~~---r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vkG~gg~ 103 (151)
T 2xzm_K 28 FGVCHIMATWNDTFIHVTDLSGRETLVRVTGGMK-VKAD---REESSPYAAMQAAIDVVNRCKELKINALHIKLRAKGGV 103 (151)
T ss_dssp EEEEEEEBCSSCBCCEEECTTCCSEEEECCHHHH-CSSG---GGGSCHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCTT
T ss_pred eeEEEEEccCCCEEEEEECCCCCEEEEEecCcce-EeCC---CCcCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCCC
Confidence 5789999999999999998777767766554433 3332 1235678999999999999999999988 34443 32
Q ss_pred c----hhhHHHHHHHHHHHcCCcC
Q 030804 152 P----YHGRIQALADAAREYGLQF 171 (171)
Q Consensus 152 ~----YhGrVkAlad~aRe~GL~f 171 (171)
+ --|| ++++.+|...||++
T Consensus 104 ~~kgpG~Gr-esairaL~~~GlkI 126 (151)
T 2xzm_K 104 ETKQPGPGA-QSALRALARSGMKI 126 (151)
T ss_dssp SCCSCCSHH-HHHHHHHHHTSCEE
T ss_pred CccCCCccH-HHHHHHHHHCCCEE
Confidence 2 2355 56677777788863
No 17
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=95.95 E-value=0.014 Score=45.35 Aligned_cols=93 Identities=24% Similarity=0.207 Sum_probs=64.3
Q ss_pred CCCceEEEEeeCCcEEEEEEeCCCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEE-Eec--C
Q 030804 73 PERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVA-FDR--G 149 (171)
Q Consensus 73 ~~rPRL~V~rSnkhiyAQvIdd~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~LAkra~e~GI~~Vv-fDR--g 149 (171)
-....+.||-|-++.+..|.|..+..+ ...|+-...+|..- ..++--||...++.++++|+|.||+.+. +=| |
T Consensus 12 ~~~gi~hI~asfNNTivtvTD~~G~~~-~~~ssG~~gfKg~r---~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vra~g 87 (137)
T 3u5c_O 12 QVFGVARIYASFNDTFVHVTDLSGKET-IARVTGGMKVKADR---DESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATG 87 (137)
T ss_dssp CCEEECCEEEETTEEEECCEETTSSSC-CCCCBTTTTSCCST---TTTCHHHHHHHHHHHHHHHHHHTCCEEECEEECSC
T ss_pred eeeEEEEEEccCCCEEEEEEcCCCCEE-EEEeCCCcEEeCCc---ccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeccC
Confidence 345688899999999999998665554 44455444666531 2356789999999999999999999883 333 3
Q ss_pred CCch----hhHHHHHHHHHHHcCCc
Q 030804 150 GYPY----HGRIQALADAAREYGLQ 170 (171)
Q Consensus 150 g~~Y----hGrVkAlad~aRe~GL~ 170 (171)
|.+. -|| ++.+.+|...||+
T Consensus 88 g~~~kgpG~Gr-~sairaL~~~Gl~ 111 (137)
T 3u5c_O 88 GTRTKTPGPGG-QAALRALARSGLR 111 (137)
T ss_dssp TTSCCSCCGGG-HHHHHHHHTTTCE
T ss_pred CCcccCCCcch-HHHHHHHHhCCCE
Confidence 3322 244 4445566667775
No 18
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=75.51 E-value=6.7 Score=30.12 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCC-------Cchh-hHHHHHHHHHHHcCCcC
Q 030804 129 GEMIAKSCLEKGITKVAFDRGG-------YPYH-GRIQALADAAREYGLQF 171 (171)
Q Consensus 129 G~~LAkra~e~GI~~VvfDRgg-------~~Yh-GrVkAlad~aRe~GL~f 171 (171)
|+.+++.+.+.|..++.|=.+. .... .|...|.+++.++|+++
T Consensus 102 ~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~ 152 (276)
T 2h0a_A 102 GRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPF 152 (276)
T ss_dssp HHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCC
Confidence 4445555566799999764332 2346 89999999999999864
No 19
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=73.33 E-value=7.4 Score=30.37 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHcCCcC
Q 030804 129 GEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 129 G~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~GL~f 171 (171)
|+.+++.+.+.|..+|.|=.+. .....|...|.+++.++|+++
T Consensus 113 g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 158 (290)
T 3clk_A 113 GYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAI 158 (290)
T ss_dssp HHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCC
Confidence 4445555556799988764332 234689999999999999864
No 20
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=71.69 E-value=5.6 Score=30.91 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHcCCcC
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~GL~f 171 (171)
.|+.+++.+.+.|..++.|=.+. .....|...|.++++++|+++
T Consensus 114 ~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~ 160 (289)
T 3g85_A 114 MGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKI 160 (289)
T ss_dssp HHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCC
Confidence 34555555566799888764332 223579999999999999864
No 21
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=71.33 E-value=6.4 Score=30.63 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecC--CC-chhhHHHHHHHHHHHcCCcC
Q 030804 128 VGEMIAKSCLEKGITKVAFDRG--GY-PYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRg--g~-~YhGrVkAlad~aRe~GL~f 171 (171)
.|+.+++.+.+.|..+|.|=.+ .. ....|...|.+++.++|+++
T Consensus 109 ~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 155 (288)
T 2qu7_A 109 AAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNV 155 (288)
T ss_dssp HHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3455555556679998866433 22 23689999999999999864
No 22
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=70.43 E-value=6.6 Score=30.88 Aligned_cols=43 Identities=26% Similarity=0.290 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHcCCcC
Q 030804 129 GEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 129 G~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~GL~f 171 (171)
|+.+++.+.+.|..++.|=.+. .....|...|.++++++|+++
T Consensus 114 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 159 (294)
T 3qk7_A 114 ASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMP 159 (294)
T ss_dssp HHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCC
Confidence 4445555566799998764332 234689999999999999864
No 23
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=70.28 E-value=5.9 Score=31.18 Aligned_cols=46 Identities=22% Similarity=0.383 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHcCCc
Q 030804 121 TIEVSKKVGEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 121 n~~AA~~VG~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~GL~ 170 (171)
|.++++.++ +.+.+.|..++.|=.+. .....|...|.++++++|++
T Consensus 115 ~~~~~~~a~----~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~ 163 (295)
T 3hcw_A 115 NILASENLT----RHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLD 163 (295)
T ss_dssp HHHHHHHHH----HHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHH----HHHHHcCCccEEEEcCCccchhHHHHHHHHHHHHHHcCCC
Confidence 455555554 45555799999764322 23468999999999999985
No 24
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=70.13 E-value=9.7 Score=29.19 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEEecCC--C-chhhHHHHHHHHHHHcCCcC
Q 030804 121 TIEVSKKVGEMIAKSCLEKGITKVAFDRGG--Y-PYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 121 n~~AA~~VG~~LAkra~e~GI~~VvfDRgg--~-~YhGrVkAlad~aRe~GL~f 171 (171)
|.++++. +++.+.+.|..+|.|=.+. . ....|...|.+++.++|+++
T Consensus 104 ~~~~~~~----a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 153 (275)
T 3d8u_A 104 HFEVGKA----CTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTP 153 (275)
T ss_dssp HHHHHHH----HHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHH----HHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCC
Confidence 4455444 4555556799888764332 2 23589999999999999853
No 25
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=69.89 E-value=8.5 Score=29.71 Aligned_cols=44 Identities=25% Similarity=0.089 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCCEEEEec--CCCchhhHHHHHHHHHHHcCCcC
Q 030804 128 VGEMIAKSCLEKGITKVAFDR--GGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDR--gg~~YhGrVkAlad~aRe~GL~f 171 (171)
.|+.+++.+.+.|..++.|=. .......|...|.++++++|+.+
T Consensus 124 ~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~ 169 (298)
T 3tb6_A 124 GGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRERELFP 169 (298)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 355555556667988886533 22334689999999999999864
No 26
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=69.79 E-value=13 Score=28.33 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC----CchhhHHHHHHHHHHHcCCc
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGG----YPYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg----~~YhGrVkAlad~aRe~GL~ 170 (171)
.|+.+++.+.+.|..+|.|=.+. .....|...|.++++++|++
T Consensus 102 ~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~ 148 (255)
T 1byk_A 102 AIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLH 148 (255)
T ss_dssp HHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCC
Confidence 34445555556799999774432 23468999999999999985
No 27
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=69.74 E-value=9.7 Score=30.06 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHcCCcC
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~GL~f 171 (171)
.|+.+++.+.+.|..++.|=.+. .....|...|.++++++|+++
T Consensus 118 ~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 164 (303)
T 3kke_A 118 GGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRS 164 (303)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCC
Confidence 34445555556899999775432 234689999999999999864
No 28
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=69.20 E-value=11 Score=29.12 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCC---chhhHHHHHHHHHHHcCCcC
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGGY---PYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg~---~YhGrVkAlad~aRe~GL~f 171 (171)
.|+.+++.+.+.|..+|.|=.+.. ....|...|.+++.++|+.+
T Consensus 118 ~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 164 (292)
T 3k4h_A 118 AAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVL 164 (292)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCC
Confidence 344555555567999997754322 23589999999999999864
No 29
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=69.12 E-value=11 Score=29.45 Aligned_cols=43 Identities=12% Similarity=0.073 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCC---chhhHHHHHHHHHHHcCCc
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGGY---PYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg~---~YhGrVkAlad~aRe~GL~ 170 (171)
.|+.+++.+.+.|..++.|=.+.. ....|...|.++++++|++
T Consensus 114 ~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~ 159 (288)
T 3gv0_A 114 YAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLT 159 (288)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCC
Confidence 455566666678999997754432 2357999999999999985
No 30
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=69.01 E-value=7 Score=30.31 Aligned_cols=43 Identities=16% Similarity=0.328 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHcCCcC
Q 030804 129 GEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 129 G~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~GL~f 171 (171)
|+.+++.+.+.|..++.|=.+. .....|...|.++++++|+++
T Consensus 106 ~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 151 (277)
T 3cs3_A 106 ATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPY 151 (277)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHHHHHHcCCCe
Confidence 4444455555799888764332 234689999999999999863
No 31
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=68.04 E-value=12 Score=29.00 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHcCCcC
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~GL~f 171 (171)
.|+.+++.+.+.|..+|.|=.+. .....|...|.++++++|+++
T Consensus 112 ~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 158 (291)
T 3egc_A 112 GARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPV 158 (291)
T ss_dssp HHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCC
Confidence 34555555556799999775433 234689999999999999864
No 32
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=67.81 E-value=12 Score=28.96 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHcCCcC
Q 030804 121 TIEVSKKVGEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 121 n~~AA~~VG~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~GL~f 171 (171)
|.++++. +++.+.+.|..+|.|=.+. .....|+..|.+++.++|+++
T Consensus 110 ~~~~~~~----~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~ 159 (289)
T 1dbq_A 110 AFEGGYM----AGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKV 159 (289)
T ss_dssp HHHHHHH----HHHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCC
T ss_pred cHHHHHH----HHHHHHHCCCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCC
Confidence 4455544 4555555699888764332 234689999999999999864
No 33
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=67.57 E-value=12 Score=28.91 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=32.6
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEEecCC--C-chhhHHHHHHHHHHHcCCcC
Q 030804 120 PTIEVSKKVGEMIAKSCLEKGITKVAFDRGG--Y-PYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 120 ~n~~AA~~VG~~LAkra~e~GI~~VvfDRgg--~-~YhGrVkAlad~aRe~GL~f 171 (171)
.|.++++ .+++.+.+.|..+|.|=.+. . ....|...|.+++.++|+++
T Consensus 122 d~~~~~~----~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 172 (296)
T 3brq_A 122 DHKQTSF----NAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIAL 172 (296)
T ss_dssp CHHHHHH----HHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCC
T ss_pred chHHHHH----HHHHHHHHCCCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 3555544 44555556699998764432 2 23689999999999999864
No 34
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=67.32 E-value=12 Score=28.76 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCc-hhhHHHHHHHHHHHcCCcC
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGGYP-YHGRIQALADAAREYGLQF 171 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg~~-YhGrVkAlad~aRe~GL~f 171 (171)
.|+.+++.+.+.|..++.|=.+... ...|...|.++++++|+++
T Consensus 105 ~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~ 149 (280)
T 3gyb_A 105 GAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEP 149 (280)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCC
Confidence 3555555556679999987554322 6789999999999999864
No 35
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=67.15 E-value=9.1 Score=30.03 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHcCCcC
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~GL~f 171 (171)
.|+.+++.+.+.|..+|.|=.+. .....|...|.++++++|+.+
T Consensus 118 ~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 164 (301)
T 3miz_A 118 GARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTE 164 (301)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCC
Confidence 34555555666899999775432 233689999999999999863
No 36
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=66.07 E-value=13 Score=30.18 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecC---CCc-hhhHHHHHHHHHHHcCCcC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRG---GYP-YHGRIQALADAAREYGLQF 171 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRg---g~~-YhGrVkAlad~aRe~GL~f 171 (171)
..|+.+++.+.+.|..++.|=.+ ... ...|...|.++++++|+.+
T Consensus 173 ~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 221 (355)
T 3e3m_A 173 RAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNP 221 (355)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCC
Confidence 34555566666789999876432 222 4689999999999999864
No 37
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=65.77 E-value=14 Score=29.63 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHcCCcC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~GL~f 171 (171)
..|+.+++.+.+.|..++.|=-+. .....|...|.+++.++|+++
T Consensus 167 ~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 214 (338)
T 3dbi_A 167 QTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIAL 214 (338)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCC
Confidence 345555666677899999875442 234689999999999999864
No 38
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=65.31 E-value=11 Score=29.63 Aligned_cols=44 Identities=7% Similarity=0.040 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHcCCcC
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~GL~f 171 (171)
.|+.+++.+.+.|..++.|=.+. .....|...|.++++++|+.+
T Consensus 131 ~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~ 177 (305)
T 3huu_A 131 AAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISN 177 (305)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCc
Confidence 34555556666799988764332 223579999999999999864
No 39
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=64.72 E-value=14 Score=28.68 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=32.5
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEEecCC--C-chhhHHHHHHHHHHHcCCcC
Q 030804 120 PTIEVSKKVGEMIAKSCLEKGITKVAFDRGG--Y-PYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 120 ~n~~AA~~VG~~LAkra~e~GI~~VvfDRgg--~-~YhGrVkAlad~aRe~GL~f 171 (171)
.|.++++.+ ++.+.+.|..+|.|=.+. . ....|...|.+++.++|+++
T Consensus 107 D~~~~g~~a----~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 157 (285)
T 3c3k_A 107 DDVAASEYV----VDQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDY 157 (285)
T ss_dssp CHHHHHHHH----HHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCC
T ss_pred ChHHHHHHH----HHHHHHcCCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCc
Confidence 355555544 455555699988764332 2 23689999999999999864
No 40
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=64.70 E-value=14 Score=28.90 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEEecC--CCchhhHHHHHHHHHHHcCCc
Q 030804 121 TIEVSKKVGEMIAKSCLEKGITKVAFDRG--GYPYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 121 n~~AA~~VG~~LAkra~e~GI~~VvfDRg--g~~YhGrVkAlad~aRe~GL~ 170 (171)
|.++++. +++.+.+.|..++.|=.+ ......|.+.|.++++++|+.
T Consensus 110 ~~~~~~~----a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~ 157 (289)
T 3k9c_A 110 DVAGITL----AVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAMDRHGLS 157 (289)
T ss_dssp HHHHHHH----HHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCG
T ss_pred hHHHHHH----HHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCC
Confidence 4555554 445555579999977543 234578999999999999986
No 41
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=64.62 E-value=14 Score=28.87 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEEecCCC----chhhHHHHHHHHHHHcCCcC
Q 030804 120 PTIEVSKKVGEMIAKSCLEKGITKVAFDRGGY----PYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 120 ~n~~AA~~VG~~LAkra~e~GI~~VvfDRgg~----~YhGrVkAlad~aRe~GL~f 171 (171)
.|.++++.+++.| .+.|..++.|=.+.. ....|...|.++++++|+++
T Consensus 116 D~~~~g~~a~~~L----~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 167 (289)
T 2fep_A 116 DYEQAIYDAVKLL----VDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPF 167 (289)
T ss_dssp CHHHHHHHHHHHH----HHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCC
T ss_pred CcHHHHHHHHHHH----HHCCCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCC
Confidence 3555555555554 556999987754432 23679999999999999864
No 42
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=64.06 E-value=7.4 Score=34.17 Aligned_cols=45 Identities=18% Similarity=0.332 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCC--c---hhhHHHHHHHHHHHcCCcC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGGY--P---YHGRIQALADAAREYGLQF 171 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg~--~---YhGrVkAlad~aRe~GL~f 171 (171)
.=|+++++.+++.|.+++.|=.|.. . ..-|.+.+.+++.|+||+|
T Consensus 142 ~Ggy~A~~~Li~~Ghk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~ 191 (371)
T 3qi7_A 142 ERGKVLAERSKEMGAKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLPF 191 (371)
T ss_dssp HHHHHHHHHHHHTTCSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccccccchhHHHHHHHHHHHHHHcCCCc
Confidence 4477788899999999998765532 2 2349999999999999975
No 43
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=63.80 E-value=15 Score=29.59 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=33.3
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEEecCCC---chhhHHHHHHHHHHHcCCcC
Q 030804 120 PTIEVSKKVGEMIAKSCLEKGITKVAFDRGGY---PYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 120 ~n~~AA~~VG~~LAkra~e~GI~~VvfDRgg~---~YhGrVkAlad~aRe~GL~f 171 (171)
.|.++++.+++.| .+.|..++.|=.+.. ....|...|.+++.++|+++
T Consensus 160 D~~~~~~~a~~~L----~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~ 210 (340)
T 1qpz_A 160 NAFEGGYMAGRYL----IERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKV 210 (340)
T ss_dssp CHHHHHHHHHHHH----HHHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHH----HHCCCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCC
Confidence 3555555555554 456999997754432 23689999999999999864
No 44
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=63.79 E-value=18 Score=28.06 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=38.9
Q ss_pred CCcHHHHHHHHHHHHHHHHH--------cCCCEEEEecC--C-CchhhHHHHHHHHHHHcCCc
Q 030804 119 GPTIEVSKKVGEMIAKSCLE--------KGITKVAFDRG--G-YPYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 119 ~~n~~AA~~VG~~LAkra~e--------~GI~~VvfDRg--g-~~YhGrVkAlad~aRe~GL~ 170 (171)
..|.++++.+++.|.+.+++ .|..++.|=.+ + .....|...|.+++.++|++
T Consensus 110 ~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~ 172 (309)
T 2fvy_A 110 TDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIK 172 (309)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCc
Confidence 45778888888888887754 67777765332 2 22368999999999999985
No 45
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*
Probab=62.62 E-value=7.9 Score=36.42 Aligned_cols=40 Identities=35% Similarity=0.467 Sum_probs=32.3
Q ss_pred HHHHHHHcCCCEEEEecCC------------------CchhhHHHHHHHHHHHcCCcC
Q 030804 132 IAKSCLEKGITKVAFDRGG------------------YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 132 LAkra~e~GI~~VvfDRgg------------------~~YhGrVkAlad~aRe~GL~f 171 (171)
+|++|++.|++-++.|=|= .++-+-+++|+|.+++.||+|
T Consensus 351 ~ad~aa~lG~e~fviDDGWf~~r~~d~~~lGdW~~d~~kFP~Glk~Lad~vh~~Gmkf 408 (729)
T 4fnq_A 351 IAKTEAELGIELFVLDDGWFGKRDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGMQF 408 (729)
T ss_dssp HHHHHHHHTCCEEEECSCCBTTCCSTTSCTTCCSBCTTTCTTHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhcCccEEEEcceeecCCCCCcccCCcEEEChhhcCccHHHHHHHHHHCCCEE
Confidence 6788899999999999541 123345999999999999987
No 46
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=62.19 E-value=18 Score=28.98 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCC---chhhHHHHHHHHHHHcCCcC
Q 030804 129 GEMIAKSCLEKGITKVAFDRGGY---PYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 129 G~~LAkra~e~GI~~VvfDRgg~---~YhGrVkAlad~aRe~GL~f 171 (171)
|+.+++.+.+.|..++.|=.+.. ....|...|.+++.++|+++
T Consensus 168 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 213 (332)
T 2o20_A 168 AYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEF 213 (332)
T ss_dssp HHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCC
Confidence 44455555667999997754432 23679999999999999864
No 47
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=61.65 E-value=11 Score=29.05 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHcCCcC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~GL~f 171 (171)
..|+.+++.+.+.|..++.|=.+. .....|...|.+++.++|+++
T Consensus 108 ~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~ 155 (277)
T 3e61_A 108 KGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDY 155 (277)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CE
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCCc
Confidence 345566666666799999775432 233689999999999999863
No 48
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=60.98 E-value=18 Score=28.97 Aligned_cols=43 Identities=28% Similarity=0.399 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCC--C-chhhHHHHHHHHHHHcCCcC
Q 030804 129 GEMIAKSCLEKGITKVAFDRGG--Y-PYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 129 G~~LAkra~e~GI~~VvfDRgg--~-~YhGrVkAlad~aRe~GL~f 171 (171)
|+.+++.+.+.|..+|.|=.+. . ....|...|.++++++|+++
T Consensus 160 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 205 (330)
T 3ctp_A 160 GRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFLDGARAKDLEI 205 (330)
T ss_dssp HHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCc
Confidence 4455555566799998764332 2 23689999999999999864
No 49
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=60.88 E-value=8.2 Score=29.48 Aligned_cols=43 Identities=16% Similarity=0.127 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecC---CCchhhHHHHHHHHHHHcCCc
Q 030804 128 VGEMIAKSCLEKGITKVAFDRG---GYPYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRg---g~~YhGrVkAlad~aRe~GL~ 170 (171)
.|+.+++.+.+.|..++.|=.+ ......|...|.++++++|++
T Consensus 107 ~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~ 152 (272)
T 3o74_A 107 ASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTGE 152 (272)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSE
T ss_pred HHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCC
Confidence 4555666667789999976432 223468999999999999975
No 50
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=60.79 E-value=17 Score=28.25 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEEecCC--C-chhhHHHHHHHHHHHcCCcC
Q 030804 121 TIEVSKKVGEMIAKSCLEKGITKVAFDRGG--Y-PYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 121 n~~AA~~VG~~LAkra~e~GI~~VvfDRgg--~-~YhGrVkAlad~aRe~GL~f 171 (171)
|.++++.+++.|.+ .|..+|.|=.+. . ....|...|.++++++|+++
T Consensus 109 ~~~~g~~a~~~L~~----~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~ 158 (287)
T 3bbl_A 109 GTAGTRQAVEYLIG----RGHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPI 158 (287)
T ss_dssp HHHHHHHHHHHHHH----HTCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHHH----CCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCC
Confidence 55666666665554 588888764332 2 23689999999999999864
No 51
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=60.10 E-value=16 Score=28.66 Aligned_cols=43 Identities=14% Similarity=0.208 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcC--CCEEEEecCC---CchhhHHHHHHHHHHHcCCcC
Q 030804 129 GEMIAKSCLEKG--ITKVAFDRGG---YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 129 G~~LAkra~e~G--I~~VvfDRgg---~~YhGrVkAlad~aRe~GL~f 171 (171)
|+.+++.+.+.| ..++.|=.+. .....|.+.|.+++.++|+++
T Consensus 116 g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~ 163 (297)
T 3rot_A 116 GKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFF 163 (297)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeE
Confidence 444555555566 7888764332 223589999999999999863
No 52
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=59.35 E-value=15 Score=28.56 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=33.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHcCCcC
Q 030804 119 GPTIEVSKKVGEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 119 ~~n~~AA~~VG~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~GL~f 171 (171)
..|.++++.+++.| .+.|..+|.|=.+. .....|...|.+++.++|+++
T Consensus 110 ~D~~~~g~~a~~~L----~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 161 (290)
T 2rgy_A 110 PDHRRGGELAAATL----IEHGHRKLAVISGPFTASDNVERLDGFFDELARHGIAR 161 (290)
T ss_dssp CCHHHHHHHHHHHH----HHTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCG
T ss_pred eCcHHHHHHHHHHH----HHCCCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 34556655555555 45699888764432 223689999999999999863
No 53
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=58.64 E-value=17 Score=28.98 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCC----chhhHHHHHHHHHHHcCCcC
Q 030804 129 GEMIAKSCLEKGITKVAFDRGGY----PYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 129 G~~LAkra~e~GI~~VvfDRgg~----~YhGrVkAlad~aRe~GL~f 171 (171)
|+.+++.+.+.|..++.|=.+.. ....|...|.++++++|+++
T Consensus 165 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 211 (332)
T 2hsg_A 165 AFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPV 211 (332)
T ss_dssp HHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCC
Confidence 45555556667999997754432 23679999999999999864
No 54
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=58.45 E-value=9.8 Score=27.91 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCCcC
Q 030804 131 MIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 131 ~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL~f 171 (171)
.+.+.|.++|++.|+|--|... ..+++.+|++||.+
T Consensus 73 ~~v~e~~~~g~k~v~~~~G~~~-----~e~~~~a~~~Girv 108 (122)
T 3ff4_A 73 SEYNYILSLKPKRVIFNPGTEN-----EELEEILSENGIEP 108 (122)
T ss_dssp GGHHHHHHHCCSEEEECTTCCC-----HHHHHHHHHTTCEE
T ss_pred HHHHHHHhcCCCEEEECCCCCh-----HHHHHHHHHcCCeE
Confidence 3456788899998888766432 58899999999863
No 55
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=58.43 E-value=18 Score=25.84 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGG 150 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg 150 (171)
.+|..+++.+.+.|++-+++|++.
T Consensus 17 ~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 17 RVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCH
Confidence 689999999999999999999974
No 56
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=56.68 E-value=11 Score=27.70 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=27.3
Q ss_pred HHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCCcC
Q 030804 133 AKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 133 Akra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL~f 171 (171)
.+.|.++|+..++++-+.+ -..+++.++++|+.|
T Consensus 86 ~~~~~~~g~~~i~~~~~~~-----~~~l~~~a~~~Gi~~ 119 (138)
T 1y81_A 86 AKEAVEAGFKKLWFQPGAE-----SEEIRRFLEKAGVEY 119 (138)
T ss_dssp HHHHHHTTCCEEEECTTSC-----CHHHHHHHHHHTCEE
T ss_pred HHHHHHcCCCEEEEcCccH-----HHHHHHHHHHCCCEE
Confidence 3457889999999998764 478888999999864
No 57
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=56.48 E-value=54 Score=24.12 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhhhhcCCCCCceEEEEeeCCcEEEEEEeCCCCcEE
Q 030804 56 EDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTL 100 (171)
Q Consensus 56 ~~r~~R~~RirkKi~gt~~rPRL~V~rSnkhiyAQvIdd~~~ktL 100 (171)
+....--.++-+.+......-+..|......++++|+|..+|++|
T Consensus 38 eel~~av~~lN~~~~~~n~~L~F~vdee~~~~vVkVvD~~TgEVI 82 (117)
T 2hc5_A 38 TNLAEMVGEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVI 82 (117)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEE
Confidence 444455566667776666677999999999999999999999985
No 58
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=56.06 E-value=14 Score=28.91 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=25.3
Q ss_pred HHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCCcC
Q 030804 132 IAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 132 LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL~f 171 (171)
=++...+.||++|+|--..|.-..-..+-.+-|+++||++
T Consensus 110 Ca~aIi~agI~rVVy~~~~~~d~~~~~~~~~~L~~aGI~V 149 (178)
T 2w4l_A 110 CAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNMAGVTF 149 (178)
T ss_dssp HHHHHHHTTCCEEEEEECTTTTSHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHCCCEEEEEeccCCCCcchHHHHHHHHHCCCEE
Confidence 3566778999999994321211122223478899999874
No 59
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=55.21 E-value=19 Score=27.73 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCC--CEEEEec----CC---CchhhHHHHHHHHHHHcCCcC
Q 030804 129 GEMIAKSCLEKGI--TKVAFDR----GG---YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 129 G~~LAkra~e~GI--~~VvfDR----gg---~~YhGrVkAlad~aRe~GL~f 171 (171)
|+.+++.+.+.|. .+|.|=. |. .....|.+.|.+++.++|+.+
T Consensus 121 g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~ 172 (304)
T 3gbv_A 121 GYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPAC 172 (304)
T ss_dssp HHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCc
Confidence 4455555556676 7886643 21 234789999999999999864
No 60
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=54.00 E-value=22 Score=27.68 Aligned_cols=43 Identities=16% Similarity=-0.021 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHc--CCCEEEEecCC--CchhhHHHHHHHHHHHcCCc
Q 030804 128 VGEMIAKSCLEK--GITKVAFDRGG--YPYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 128 VG~~LAkra~e~--GI~~VvfDRgg--~~YhGrVkAlad~aRe~GL~ 170 (171)
.|+.+++.+.+. |..+|.|=.+. .....|...|.++++++|+.
T Consensus 112 ~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~ 158 (305)
T 3g1w_A 112 AGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKETLEAEFPA 158 (305)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHHHHHhhCCC
Confidence 344555555555 88888765432 23357999999999999875
No 61
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=53.63 E-value=13 Score=27.40 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCCcC
Q 030804 130 EMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 130 ~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL~f 171 (171)
..+++.|.++|+..+++.-|.. -..+++.++++|+.+
T Consensus 91 ~~vv~~~~~~gi~~i~~~~g~~-----~~~l~~~a~~~Gi~v 127 (144)
T 2d59_A 91 MEYVEQAIKKGAKVVWFQYNTY-----NREASKKADEAGLII 127 (144)
T ss_dssp HHHHHHHHHHTCSEEEECTTCC-----CHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCEEEECCCch-----HHHHHHHHHHcCCEE
Confidence 3445678889999998887654 477888999999853
No 62
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=50.83 E-value=16 Score=29.39 Aligned_cols=47 Identities=15% Similarity=0.366 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEEecCC----CchhhHHHHHHHHHHHcCCcC
Q 030804 121 TIEVSKKVGEMIAKSCLEKGITKVAFDRGG----YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 121 n~~AA~~VG~~LAkra~e~GI~~VvfDRgg----~~YhGrVkAlad~aRe~GL~f 171 (171)
|.++++.. ++.+.+.|..++.|=-+. .....|...|.++++++|+++
T Consensus 169 ~~~~~~~a----~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 219 (344)
T 3kjx_A 169 HRRAGREM----AQAILKAGYRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEI 219 (344)
T ss_dssp HHHHHHHH----HHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHH----HHHHHHCCCCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCC
Confidence 45555554 445555698888664332 234689999999999999864
No 63
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=50.01 E-value=11 Score=27.90 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=26.1
Q ss_pred HHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCCcC
Q 030804 134 KSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 134 kra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL~f 171 (171)
+.|.++|+..++++-+.. -..+++.++++|+.|
T Consensus 88 ~~~~~~g~~~i~i~~~~~-----~~~l~~~a~~~Gi~~ 120 (145)
T 2duw_A 88 QEAIAIGAKTLWLQLGVI-----NEQAAVLAREAGLSV 120 (145)
T ss_dssp HHHHHHTCCEEECCTTCC-----CHHHHHHHHTTTCEE
T ss_pred HHHHHcCCCEEEEcCChH-----HHHHHHHHHHcCCEE
Confidence 447778999999987654 578888899999864
No 64
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=49.45 E-value=36 Score=28.37 Aligned_cols=45 Identities=20% Similarity=0.059 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCc-----hhhHHHHHHHHHHHcCCc
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYP-----YHGRIQALADAAREYGLQ 170 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~-----YhGrVkAlad~aRe~GL~ 170 (171)
+..|+.+++.+.+.|..++.|=-+... ...|...|.++++++|++
T Consensus 124 ~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~ 173 (412)
T 4fe7_A 124 YALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYR 173 (412)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHHHHHHHHHcCCC
Confidence 345566666667789999987543221 468999999999999975
No 65
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=49.25 E-value=26 Score=27.59 Aligned_cols=44 Identities=14% Similarity=0.242 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCch-hhHHHHHHHHHHHcCCc
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGGYPY-HGRIQALADAAREYGLQ 170 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~ 170 (171)
..++.+++-+.+.|.++|.+=-....| .++.+.|.+++.++|++
T Consensus 121 ~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~ 165 (362)
T 3snr_A 121 IMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLK 165 (362)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCE
Confidence 445555666677899998542222344 67899999999999986
No 66
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=48.90 E-value=32 Score=24.06 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRG 149 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRg 149 (171)
.+|..+++.+.+.|++-+++|++
T Consensus 16 ~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 16 AAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHHHHHCCCeEEEEECC
Confidence 48999999999999999999996
No 67
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=48.87 E-value=21 Score=27.11 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=35.4
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHc-CCc
Q 030804 120 PTIEVSKKVGEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREY-GLQ 170 (171)
Q Consensus 120 ~n~~AA~~VG~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~-GL~ 170 (171)
.|.++++.+++.|.++..+.|..++.|=.+. .....|...|.+++.++ |++
T Consensus 106 d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~ 160 (276)
T 3ksm_A 106 DNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIR 160 (276)
T ss_dssp CHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEE
T ss_pred CHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcE
Confidence 3556666666666655444499999885543 22368999999999998 875
No 68
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=48.66 E-value=15 Score=27.02 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=27.2
Q ss_pred HHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCCcC
Q 030804 132 IAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 132 LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL~f 171 (171)
+.+.|.++|++.+++.-+.+ -..+++.++++|+.+
T Consensus 86 v~~~~~~~gi~~i~~~~g~~-----~~~~~~~a~~~Gir~ 120 (140)
T 1iuk_A 86 HLPEVLALRPGLVWLQSGIR-----HPEFEKALKEAGIPV 120 (140)
T ss_dssp THHHHHHHCCSCEEECTTCC-----CHHHHHHHHHTTCCE
T ss_pred HHHHHHHcCCCEEEEcCCcC-----HHHHHHHHHHcCCEE
Confidence 34678889999998887654 278888999999864
No 69
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=48.27 E-value=15 Score=28.45 Aligned_cols=43 Identities=16% Similarity=0.107 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcC-----CCEEEEecCC---CchhhHHHHHHHHHHHcCCc
Q 030804 128 VGEMIAKSCLEKG-----ITKVAFDRGG---YPYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 128 VG~~LAkra~e~G-----I~~VvfDRgg---~~YhGrVkAlad~aRe~GL~ 170 (171)
.|+.+++.+.+.| ..+|.|=.+. .....|...|.+++.+.|++
T Consensus 118 ~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~ 168 (304)
T 3o1i_D 118 MGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPVTTGFYEAIKNSDIH 168 (304)
T ss_dssp HHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHHHHHHHHTTTTBTEE
T ss_pred HHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHHHHHHHHHHhcCCCE
Confidence 3555555556666 8888775543 23368999999999999975
No 70
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=48.09 E-value=30 Score=28.14 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCCc
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL~ 170 (171)
+.=+|+.+|++..+.|..-+..||+ ..+.+.+++.+++.|-+
T Consensus 16 s~GIG~aiA~~la~~Ga~Vv~~~~~----~~~~~~~~~~i~~~g~~ 57 (254)
T 4fn4_A 16 GSGIGRAIAKKFALNDSIVVAVELL----EDRLNQIVQELRGMGKE 57 (254)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHcCCEEEEEECC----HHHHHHHHHHHHhcCCc
Confidence 4468999999999999988889996 45778888888887743
No 71
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=47.81 E-value=22 Score=28.85 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEec---------C-----------CCchhhHHHHHHHHHHHcCCc
Q 030804 127 KVGEMIAKSCLEKGITKVAFDR---------G-----------GYPYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDR---------g-----------g~~YhGrVkAlad~aRe~GL~ 170 (171)
..|+.+++.+.+.|..++.|=- | ......|+..|.+++.++|+.
T Consensus 175 ~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~ 238 (366)
T 3h5t_A 175 KAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGID 238 (366)
T ss_dssp HHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHCCCCcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCC
Confidence 3455556666668999886532 1 223468999999999999986
No 72
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=46.80 E-value=31 Score=27.72 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHcCCc
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~GL~ 170 (171)
+..|+.+++.+.+.|..++.|=-+. .....|...|.++++++|+.
T Consensus 159 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~ 206 (333)
T 3jvd_A 159 EAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAE 206 (333)
T ss_dssp HHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC
Confidence 3446666667778899999774432 23468999999999999974
No 73
>2jui_A PLNE; ampiphilic alpha helix, toxin; NMR {Lactobacillus plantarum}
Probab=46.63 E-value=11 Score=22.01 Aligned_cols=20 Identities=35% Similarity=0.790 Sum_probs=17.1
Q ss_pred EecCCCchhhHHHHHHHHHH
Q 030804 146 FDRGGYPYHGRIQALADAAR 165 (171)
Q Consensus 146 fDRgg~~YhGrVkAlad~aR 165 (171)
|+||||.++--|.-+.|++-
T Consensus 1 fnrggynfgksvrhvid~ig 20 (33)
T 2jui_A 1 FNRGGYNFGKSVRHVVDAIG 20 (33)
T ss_dssp CCSCSCCSSHHHHHHHHHHH
T ss_pred CCccccccchhHHHHHHHHh
Confidence 78999999988988888763
No 74
>4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron}
Probab=46.36 E-value=18 Score=31.36 Aligned_cols=40 Identities=25% Similarity=0.389 Sum_probs=29.3
Q ss_pred HHHHHHHcCCCEEEEecCCC---c-h--------------hhHHHHHHHHHHHcCCcC
Q 030804 132 IAKSCLEKGITKVAFDRGGY---P-Y--------------HGRIQALADAAREYGLQF 171 (171)
Q Consensus 132 LAkra~e~GI~~VvfDRgg~---~-Y--------------hGrVkAlad~aRe~GL~f 171 (171)
+-+.+++.||+.||+-+.++ . | ..-|..+++++++.||+|
T Consensus 59 ~~~~mK~~GikyvIl~~~~~~gf~~~pS~~~~~~~~~~p~~Dlv~~~l~aa~k~Gmkv 116 (340)
T 4h41_A 59 DFQHMKRIGIDTVIMIRSGYRKFMTYPSPYLLKKGCYMPSVDLVDMYLRLAEKYNMKF 116 (340)
T ss_dssp HHHHHHHTTCCEEEESCSEETTEESSCCHHHHHTTCCCCSBCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCCEEEEEEEeeCCeeccCcccccccCccCCcccHHHHHHHHHHHhCCeE
Confidence 34567999999999865321 1 1 133999999999999984
No 75
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=45.84 E-value=37 Score=27.38 Aligned_cols=43 Identities=12% Similarity=0.068 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCC---chhhHHHHHHHHHHHcCCc
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGGY---PYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg~---~YhGrVkAlad~aRe~GL~ 170 (171)
-|+.+++.+.+.|..+|.|=.+.. ....|...|.++++++||+
T Consensus 166 ~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~ 211 (349)
T 1jye_A 166 GTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQ 211 (349)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCC
Confidence 344455555667999987754432 2357999999999999985
No 76
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=44.44 E-value=31 Score=27.48 Aligned_cols=44 Identities=30% Similarity=0.373 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCch-hhHHHHHHHHHHHcCCc
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGGYPY-HGRIQALADAAREYGLQ 170 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~ 170 (171)
..++.+++-+.+.|.++|.+=...+.| .++.+.|.+.+.+.|++
T Consensus 145 ~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~ 189 (386)
T 3sg0_A 145 IMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFE 189 (386)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCE
Confidence 345555666667899998542223445 57899999999999986
No 77
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=44.33 E-value=34 Score=27.31 Aligned_cols=45 Identities=9% Similarity=0.137 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCch-hhHHHHHHHHHHHcCCcC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGGYPY-HGRIQALADAAREYGLQF 171 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~f 171 (171)
..++.+++-+.+.|.++|.+=-..+.| ..+.+.|.+++.++|+++
T Consensus 137 ~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v 182 (375)
T 4evq_A 137 QIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEV 182 (375)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHHcCCeE
Confidence 455666777777899998542222344 578999999999999863
No 78
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=44.12 E-value=56 Score=26.39 Aligned_cols=51 Identities=16% Similarity=-0.043 Sum_probs=37.9
Q ss_pred CcHHHHHHHHHHHHHHHHHcCC-CEEEEecCC--CchhhHHHHHHHHHHHcCCcC
Q 030804 120 PTIEVSKKVGEMIAKSCLEKGI-TKVAFDRGG--YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 120 ~n~~AA~~VG~~LAkra~e~GI-~~VvfDRgg--~~YhGrVkAlad~aRe~GL~f 171 (171)
.+.++++..| .+|..+.+.|. .+|.|=-|. ....-|+..|.+++++.|+++
T Consensus 108 d~~~~~~lag-~~a~~l~~~Gh~r~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~ 161 (318)
T 2fqx_A 108 GQNEGSFLVG-VAAALKAKEAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDI 161 (318)
T ss_dssp CHHHHHHHHH-HHHHHHHHHTTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHH-HHHHHHhccCCCcEEEEEeCcccHHHHHHHHHHHHHHHHHCCCC
Confidence 3678888888 55777778897 788764332 234678999999999999753
No 79
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=44.08 E-value=32 Score=27.34 Aligned_cols=49 Identities=22% Similarity=0.250 Sum_probs=32.6
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEEecCC--C-chhhHHHHHHHHHHHc-CCc
Q 030804 120 PTIEVSKKVGEMIAKSCLEKGITKVAFDRGG--Y-PYHGRIQALADAAREY-GLQ 170 (171)
Q Consensus 120 ~n~~AA~~VG~~LAkra~e~GI~~VvfDRgg--~-~YhGrVkAlad~aRe~-GL~ 170 (171)
.|.++++.+++.|.+.+ .|..+|.|=.+. . ....|.+.|.+++.++ |++
T Consensus 117 D~~~~g~~a~~~L~~~~--~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~ 169 (332)
T 2rjo_A 117 DGVAYGEETATQLFKSM--GGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQ 169 (332)
T ss_dssp CHHHHHHHHHHHHHHHT--TTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEE
T ss_pred ChHHHHHHHHHHHHHHc--CCCCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcE
Confidence 35555555555554432 688888764432 2 2368999999999999 875
No 80
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=43.99 E-value=24 Score=27.32 Aligned_cols=43 Identities=23% Similarity=0.225 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHcCCcC
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~GL~f 171 (171)
.|+.+++.+. .|..++.|=.+. .....|...|.++++++|+++
T Consensus 110 ~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~ 155 (277)
T 3hs3_A 110 GGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDY 155 (277)
T ss_dssp HHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCC
Confidence 3445555555 899999774432 234689999999999999863
No 81
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=43.54 E-value=32 Score=27.05 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEEecCC--C-chhhHHHHHHHHHHHcCCc
Q 030804 120 PTIEVSKKVGEMIAKSCLEKGITKVAFDRGG--Y-PYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 120 ~n~~AA~~VG~~LAkra~e~GI~~VvfDRgg--~-~YhGrVkAlad~aRe~GL~ 170 (171)
.|.++++.+++.|.+++ .|..+|.|=.+. . ....|...|.+++++.|++
T Consensus 104 d~~~~g~~a~~~L~~~~--~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~ 155 (313)
T 2h3h_A 104 DNYQAGYTAGLIMKELL--GGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIE 155 (313)
T ss_dssp CHHHHHHHHHHHHHHHH--TSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCE
T ss_pred CHHHHHHHHHHHHHHHc--CCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCE
Confidence 35566666666655543 288888764432 2 2368999999999999985
No 82
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans}
Probab=42.94 E-value=17 Score=31.42 Aligned_cols=51 Identities=16% Similarity=0.168 Sum_probs=36.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCEE---EEe--c---CC---C-chh-------hHHHHHHHHHHHcCC
Q 030804 119 GPTIEVSKKVGEMIAKSCLEKGITKV---AFD--R---GG---Y-PYH-------GRIQALADAAREYGL 169 (171)
Q Consensus 119 ~~n~~AA~~VG~~LAkra~e~GI~~V---vfD--R---gg---~-~Yh-------GrVkAlad~aRe~GL 169 (171)
+.|.+.++.+|+.+|+.+.+.||+-. +.| | ++ . -|+ --..|++++++++|+
T Consensus 104 t~d~~l~~~~g~~~a~E~ra~Gi~~~~aPv~Dv~r~p~~~rig~RsfgeDP~lv~~~a~a~v~Glq~~gV 173 (351)
T 3tev_A 104 ADDQQLTEDVNAALARQLRSVGINWNFTPVLDINVNPANPVIGDRAYGSDAARVTRHGRAALAGHTREGV 173 (351)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTCCEECCCBCCCCCCTTCCSSGGGSSCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCEeccceeEeccCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 35789999999999999999999853 334 2 22 1 111 225688999999886
No 83
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=42.26 E-value=34 Score=30.26 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCch-hhHHHHHHHHHHHcCCcC
Q 030804 129 GEMIAKSCLEKGITKVAFDRGGYPY-HGRIQALADAAREYGLQF 171 (171)
Q Consensus 129 G~~LAkra~e~GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~f 171 (171)
.++|.+-+.+.||+.|++|+.-..| .-+-+++.+.+.+.||+|
T Consensus 81 ~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~~ 124 (484)
T 1owl_A 81 QHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRA 124 (484)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCcEE
Confidence 3566777888999999999875555 467788888888889864
No 84
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=41.75 E-value=55 Score=25.61 Aligned_cols=48 Identities=13% Similarity=0.019 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHHHHHHHHHc---CCCEEEEecCCC---chhhHHHHHHHHHHHc
Q 030804 120 PTIEVSKKVGEMIAKSCLEK---GITKVAFDRGGY---PYHGRIQALADAAREY 167 (171)
Q Consensus 120 ~n~~AA~~VG~~LAkra~e~---GI~~VvfDRgg~---~YhGrVkAlad~aRe~ 167 (171)
.|..+++.+++.|.+.+.+. |..++.|=.|.. ....|.+.|.+++.++
T Consensus 107 D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~al~~~ 160 (330)
T 3uug_A 107 DNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYDGAMSVLKPY 160 (330)
T ss_dssp CHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHHHHHHHHHHHHhc
Confidence 46778888888888877764 888998855432 2368999999999987
No 85
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=41.49 E-value=29 Score=28.15 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCch-hhHHHHHHHHHHHcCCc
Q 030804 129 GEMIAKSCLEKGITKVAFDRGGYPY-HGRIQALADAAREYGLQ 170 (171)
Q Consensus 129 G~~LAkra~e~GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~ 170 (171)
++.+++.+.+.|.++|.|=.+.+.| .++.+.|.+++.+.|++
T Consensus 128 ~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~ 170 (385)
T 1pea_A 128 SAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGT 170 (385)
T ss_dssp HHHHHHHHHTTTCSEEEEEEESSHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHccCcEEEEEeCCChHHHHHHHHHHHHHHHcCCE
Confidence 5666777778888988542223445 57899999999999985
No 86
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=41.22 E-value=42 Score=24.57 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHc-CCCEEEEecCC
Q 030804 127 KVGEMIAKSCLEK-GITKVAFDRGG 150 (171)
Q Consensus 127 ~VG~~LAkra~e~-GI~~VvfDRgg 150 (171)
.+|..+++.+.+. |++-+++|++.
T Consensus 49 ~~G~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 49 RIGTGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred HHHHHHHHHHHhccCCeEEEEECCH
Confidence 6899999999999 99988999974
No 87
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=40.47 E-value=41 Score=26.62 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
.-+|..+|+++.+.|.+-+..||+ ..+...+++.+++.|
T Consensus 34 ~GIG~aia~~la~~G~~V~~~~r~----~~~~~~~~~~l~~~~ 72 (279)
T 3sju_A 34 SGIGLAVARTLAARGIAVYGCARD----AKNVSAAVDGLRAAG 72 (279)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHHhcC
Confidence 469999999999999987788986 345666666666554
No 88
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=40.19 E-value=54 Score=24.90 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
+.-+|..|++++.+.|.+-+..||+ ..+...+.+.+++.|
T Consensus 23 s~gIG~~ia~~l~~~G~~V~~~~r~----~~~~~~~~~~~~~~~ 62 (247)
T 3i1j_A 23 ARGIGAAAARAYAAHGASVVLLGRT----EASLAEVSDQIKSAG 62 (247)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHCCCEEEEEecC----HHHHHHHHHHHHhcC
Confidence 3578999999999999987788987 344555555555544
No 89
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=40.13 E-value=53 Score=25.11 Aligned_cols=48 Identities=8% Similarity=0.081 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEEecCC--C-chhhHHHHHHHHHHHc-CCc
Q 030804 121 TIEVSKKVGEMIAKSCLEKGITKVAFDRGG--Y-PYHGRIQALADAAREY-GLQ 170 (171)
Q Consensus 121 n~~AA~~VG~~LAkra~e~GI~~VvfDRgg--~-~YhGrVkAlad~aRe~-GL~ 170 (171)
|.++++.+++.|.+.. .|..+|.|=.+. . ....|...|.++++++ |++
T Consensus 107 ~~~~g~~~~~~l~~~~--~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~ 158 (291)
T 3l49_A 107 NYSIGAELALQMVADL--GGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVK 158 (291)
T ss_dssp HHHHHHHHHHHHHHHH--TTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEE
T ss_pred hHHHHHHHHHHHHHHc--CCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCE
Confidence 4555555555544433 788899775432 2 2357899999999999 564
No 90
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=39.73 E-value=26 Score=24.49 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCE
Q 030804 122 IEVSKKVGEMIAKSCLEKGITK 143 (171)
Q Consensus 122 ~~AA~~VG~~LAkra~e~GI~~ 143 (171)
-..+|.||..|++..++.|+++
T Consensus 30 ~K~SYaIG~~mG~~L~~~g~~~ 51 (88)
T 3b09_A 30 QHASYGVGRQMGEQLAANSFEG 51 (88)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHHHHHHHHhCCccc
Confidence 4589999999999999988865
No 91
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=39.55 E-value=36 Score=26.97 Aligned_cols=42 Identities=24% Similarity=0.099 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCch-hhHHHHHHHHHHHcCCc
Q 030804 129 GEMIAKSCLEKGITKVAFDRGGYPY-HGRIQALADAAREYGLQ 170 (171)
Q Consensus 129 G~~LAkra~e~GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~ 170 (171)
++.+++-+.+.|.++|.+=.....| ..+.+.|.+++.+.|++
T Consensus 127 ~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~ 169 (358)
T 3hut_A 127 GPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGA 169 (358)
T ss_dssp HHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHHHHHHHcCCE
Confidence 4455555666699988542222344 57899999999999986
No 92
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=39.47 E-value=53 Score=25.03 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
+.-+|..|++++.+.|.+-+..||+. .+...+.+.+++.|
T Consensus 22 sggiG~~la~~l~~~G~~V~~~~r~~----~~~~~~~~~l~~~~ 61 (260)
T 3awd_A 22 AQNIGLACVTALAEAGARVIIADLDE----AMATKAVEDLRMEG 61 (260)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHhcC
Confidence 34699999999999998777889863 23444444454433
No 93
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=39.41 E-value=61 Score=26.13 Aligned_cols=45 Identities=9% Similarity=0.061 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHcCC
Q 030804 121 TIEVSKKVGEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREYGL 169 (171)
Q Consensus 121 n~~AA~~VG~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~GL 169 (171)
|.++++.+++. +.+.|..+|.|=.+. .....|...|.+++.++|+
T Consensus 168 ~~~~~~~a~~~----L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~ 215 (348)
T 3bil_A 168 PQPGIAAAVEL----LAHNNALPIGYLSGPMDTSTGRERLEDFKAACANSKI 215 (348)
T ss_dssp CHHHHHHHHHH----HHHTTCCSEEEECCCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHH----HHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCc
Confidence 45555555544 455699998775443 2236899999999999997
No 94
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=39.23 E-value=47 Score=27.89 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=49.2
Q ss_pred EEEEEEeCCCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEE-EecCCCchhhHHHHHHHHHH
Q 030804 87 LYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVA-FDRGGYPYHGRIQALADAAR 165 (171)
Q Consensus 87 iyAQvIdd~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~LAkra~e~GI~~Vv-fDRgg~~YhGrVkAlad~aR 165 (171)
+.--||.+.+..=.+-.||-...-+.. ...-.+++|. .-+++.|+..|- |.-+|.++-.-++|+++++-
T Consensus 115 ~VNaLvsPTG~~G~VkIsTGp~Ss~~~---~~~V~vetAi-------aml~dmG~~SvKffPm~Gl~~l~E~~avAka~a 184 (249)
T 3m0z_A 115 VVNGLVSPTGTPGMVKISTGPLSSGAA---DGIVPLETAI-------ALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACA 184 (249)
T ss_dssp EEEEEEBCCSSTTEEECCCSTTGGGSS---CCEEEHHHHH-------HHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHH
T ss_pred EEEEEEcCCCccceEEeccCccccCCC---CceeeHHHHH-------HHHHHcCCCeeeEeecCCcccHHHHHHHHHHHH
Confidence 333455665544455556654432221 1234566654 347899999995 56799999999999999999
Q ss_pred HcCC
Q 030804 166 EYGL 169 (171)
Q Consensus 166 e~GL 169 (171)
++|+
T Consensus 185 ~~g~ 188 (249)
T 3m0z_A 185 AHDF 188 (249)
T ss_dssp HTTC
T ss_pred HcCc
Confidence 9997
No 95
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=38.97 E-value=54 Score=25.91 Aligned_cols=44 Identities=25% Similarity=0.269 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHc-CCCEEEEecCCCch-hhHHHHHHHHHHHcCCcC
Q 030804 128 VGEMIAKSCLEK-GITKVAFDRGGYPY-HGRIQALADAAREYGLQF 171 (171)
Q Consensus 128 VG~~LAkra~e~-GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~f 171 (171)
.+..+++-+.+. |.++|.+=-+...| .++.+.|.+.+.+.|+++
T Consensus 124 ~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v 169 (356)
T 3ipc_A 124 QGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTE 169 (356)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEE
Confidence 345556655555 98888542223455 578999999999999864
No 96
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=38.39 E-value=53 Score=25.12 Aligned_cols=49 Identities=20% Similarity=0.087 Sum_probs=33.0
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEEecCC--C-chhhHHHHHHHHHHHcCCc
Q 030804 120 PTIEVSKKVGEMIAKSCLEKGITKVAFDRGG--Y-PYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 120 ~n~~AA~~VG~~LAkra~e~GI~~VvfDRgg--~-~YhGrVkAlad~aRe~GL~ 170 (171)
.|..+++..++.|.+... |..++.|=.|. . ....|...|.++++++|++
T Consensus 104 D~~~~g~~a~~~L~~~g~--g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~ 155 (271)
T 2dri_A 104 DNVLGGKIAGDYIAKKAG--EGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 155 (271)
T ss_dssp CHHHHHHHHHHHHHHHHC--TTCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCE
T ss_pred ChHHHHHHHHHHHHHHcC--CCCeEEEEECCCCCccHhHHHHHHHHHHhcCCCE
Confidence 356666666666666542 45677664332 2 2358999999999999985
No 97
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=38.22 E-value=63 Score=25.12 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCch--------hhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPY--------HGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~Y--------hGrVkAlad~aRe~G 168 (171)
.-+|..+|+++.+.|.+-++.||..... ..++..+.+.+.+.|
T Consensus 20 ~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (287)
T 3pxx_A 20 RGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG 70 (287)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC
Confidence 4689999999999999888889863211 344555555555444
No 98
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=37.73 E-value=31 Score=30.48 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCch-hhHHHHHHHHHHHcCCcC
Q 030804 130 EMIAKSCLEKGITKVAFDRGGYPY-HGRIQALADAAREYGLQF 171 (171)
Q Consensus 130 ~~LAkra~e~GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~f 171 (171)
++|.+-+.+.||+.|++|+....| .-+-+++.+.+.+.||.|
T Consensus 90 ~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 132 (489)
T 1np7_A 90 QVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEA 132 (489)
T ss_dssp HHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHhcCCeE
Confidence 466777888999999999875555 367788888888888864
No 99
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=37.50 E-value=61 Score=24.97 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
.-+|+.+++++.+.|.+-+..||+. .+.+.+++.+++.|
T Consensus 17 ~gIG~aia~~l~~~G~~V~~~~r~~----~~~~~~~~~l~~~~ 55 (247)
T 2jah_A 17 SGIGEATARALAAEGAAVAIAARRV----EKLRALGDELTAAG 55 (247)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHHHhcC
Confidence 4689999999999998877889863 44555555555443
No 100
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=37.38 E-value=37 Score=26.81 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=28.7
Q ss_pred HHHHHHHHc--CCCEEEE--ecCCCchhhHHHHHHHHHHHcCCcC
Q 030804 131 MIAKSCLEK--GITKVAF--DRGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 131 ~LAkra~e~--GI~~Vvf--DRgg~~YhGrVkAlad~aRe~GL~f 171 (171)
...+-+++. |.++|.| |........|++.+.+++.++||++
T Consensus 128 ~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~ 172 (302)
T 2qh8_A 128 QHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKL 172 (302)
T ss_dssp HHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCEE
Confidence 344555666 9998854 5432224678999999999999864
No 101
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=37.30 E-value=42 Score=27.20 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 169 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL 169 (171)
+.=+|+.+|+++.+.|.+-++.||+ ..+.+.+++.+++.|-
T Consensus 18 s~GIG~aia~~la~~Ga~Vvi~~~~----~~~~~~~~~~l~~~g~ 58 (255)
T 4g81_D 18 ARGLGFAYAEGLAAAGARVILNDIR----ATLLAESVDTLTRKGY 58 (255)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCSC----HHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECC----HHHHHHHHHHHHhcCC
Confidence 3468999999999999988888986 3567777777777764
No 102
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=37.28 E-value=35 Score=30.94 Aligned_cols=42 Identities=12% Similarity=0.283 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCchh-hHHHHHHHHHHHcCCcC
Q 030804 130 EMIAKSCLEKGITKVAFDRGGYPYH-GRIQALADAAREYGLQF 171 (171)
Q Consensus 130 ~~LAkra~e~GI~~VvfDRgg~~Yh-GrVkAlad~aRe~GL~f 171 (171)
++|.+-+.+.||+.|++++....|. -|=+++.+.+++.||.|
T Consensus 89 ~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~~gi~~ 131 (538)
T 3tvs_A 89 YIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDF 131 (538)
T ss_dssp HHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHHHhCCceE
Confidence 4566777888999999999755553 55678888899999875
No 103
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=37.24 E-value=65 Score=25.20 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCc--------hhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYP--------YHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~--------YhGrVkAlad~aRe~G 168 (171)
.-+|..+++++.+.|.+-++.||+... ....+..+.+.+.+.|
T Consensus 20 ~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (281)
T 3s55_A 20 RGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTG 70 (281)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcC
Confidence 469999999999999987888996321 1344555555555544
No 104
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A*
Probab=37.16 E-value=29 Score=32.15 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=36.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCEE---EEe-----cCC---Cc-h------hhH-HHHHHHHHHHcCC
Q 030804 119 GPTIEVSKKVGEMIAKSCLEKGITKV---AFD-----RGG---YP-Y------HGR-IQALADAAREYGL 169 (171)
Q Consensus 119 ~~n~~AA~~VG~~LAkra~e~GI~~V---vfD-----Rgg---~~-Y------hGr-VkAlad~aRe~GL 169 (171)
+-|.+.++.+|+.+|+.+.+.||+-. +.| |++ ++ | -|+ ..|++++++++|+
T Consensus 147 t~d~~l~~~~g~~~a~E~ra~Gi~~~~aPvvDv~r~p~~grig~rsfgeDP~lv~~~a~a~v~Glq~~gV 216 (642)
T 3bmx_A 147 ARSRINAYQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQDI 216 (642)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTCCEECCCBCCCCCCTTCSSSGGGSSCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCCEEECCccccCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHhCCc
Confidence 35789999999999999999999753 334 222 11 1 122 5679999999886
No 105
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=37.09 E-value=42 Score=25.97 Aligned_cols=42 Identities=17% Similarity=-0.011 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC--C-chhhHHHHHHHHHHHcCC
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGG--Y-PYHGRIQALADAAREYGL 169 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg--~-~YhGrVkAlad~aRe~GL 169 (171)
.|+.+++.+.+.|..+|.|=.+. . ....|...|.++++++|+
T Consensus 125 ~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~ 169 (293)
T 2iks_A 125 DAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPR 169 (293)
T ss_dssp HHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHHHHHHcCC
Confidence 34555566666799888764332 2 236899999999999996
No 106
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=36.80 E-value=46 Score=31.20 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=37.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCEE---EEecCCCchhh--------------H-HHHHHHHHHHcCC
Q 030804 119 GPTIEVSKKVGEMIAKSCLEKGITKV---AFDRGGYPYHG--------------R-IQALADAAREYGL 169 (171)
Q Consensus 119 ~~n~~AA~~VG~~LAkra~e~GI~~V---vfDRgg~~YhG--------------r-VkAlad~aRe~GL 169 (171)
+-|.+.++.+|+.+|+.+.+.||.-. +.|-......| + ..|++++++++|+
T Consensus 90 t~d~~l~~~~g~~~a~E~~a~Gi~~~~aP~vdi~r~p~~gR~~e~fgeDP~l~~~~a~a~v~G~q~~gV 158 (721)
T 2x41_A 90 TWNRELLEEVGKAMGEEVREYGVDVLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQGV 158 (721)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSEECCCBCCCCCSTTCTTGGGSCCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCEEeeceECCCCCCCCCcccccCCCCHHHHHHHHHHHHHHhhhCCe
Confidence 45889999999999999999999854 34422112222 2 5679999999886
No 107
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=36.79 E-value=56 Score=26.06 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC--CchhhHHHHHHHHHHHcCC
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGG--YPYHGRIQALADAAREYGL 169 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg--~~YhGrVkAlad~aRe~GL 169 (171)
-|+.+++.+.+.|..++.|=-+. .....|...|.++++++|+
T Consensus 165 ~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~ 208 (339)
T 3h5o_A 165 AGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRAALDAADC 208 (339)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHHHHHHCCC
Confidence 34555556667799988764322 2336799999999999998
No 108
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=36.71 E-value=65 Score=25.79 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCC
Q 030804 122 IEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 169 (171)
Q Consensus 122 ~~AA~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL 169 (171)
.++|+.+|+.||++ |+.-| + ||. .|-+.|.++++.++|-
T Consensus 55 ~~~A~~lg~~La~~----g~~lV-s--GGg--~GiM~aa~~gAl~~gG 93 (217)
T 1wek_A 55 YEAGYRLGRALAEA----GFGVV-T--GGG--PGVMEAVNRGAYEAGG 93 (217)
T ss_dssp HHHHHHHHHHHHHH----TCEEE-E--CSC--SHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHC----CCEEE-e--CCh--hhHHHHHHHHHHHcCC
Confidence 57889999999875 55433 3 554 6999999999999874
No 109
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=36.63 E-value=52 Score=26.27 Aligned_cols=43 Identities=9% Similarity=0.131 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCch-hhHHHHHHHHHHHcCCcC
Q 030804 129 GEMIAKSCLEKGITKVAFDRGGYPY-HGRIQALADAAREYGLQF 171 (171)
Q Consensus 129 G~~LAkra~e~GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~f 171 (171)
+..+++-+++.|.++|.+=.....| .++.+.|.+.+.+.|+++
T Consensus 129 ~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v 172 (364)
T 3lop_A 129 IDKMITALVTIGVTRIGVLYQEDALGKEAITGVERTLKAHALAI 172 (364)
T ss_dssp HHHHHHHHHHTTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHcCCceEEEEEeCchhhHHHHHHHHHHHHHcCCcE
Confidence 4556666678899988442222345 478999999999999874
No 110
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=36.10 E-value=51 Score=25.75 Aligned_cols=41 Identities=27% Similarity=0.483 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 124 VSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 124 AA~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
++.-+|..|++++.+.|.+-+..||+. .+...+.+.+++.|
T Consensus 40 asggIG~~la~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~~~ 80 (279)
T 1xg5_A 40 ASGGIGAAVARALVQQGLKVVGCARTV----GNIEELAAECKSAG 80 (279)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHCCCEEEEEECCh----HHHHHHHHHHHhcC
Confidence 345799999999999998877889863 34555555555544
No 111
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=36.10 E-value=60 Score=25.50 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCC------------chhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGY------------PYHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~------------~YhGrVkAlad~aRe~G 168 (171)
.-+|..+|+++.+.|.+-+..||+.. ....+++.+++.+.+.|
T Consensus 21 ~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (286)
T 3uve_A 21 RGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN 75 (286)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC
Confidence 46899999999999999888998631 12456666666665544
No 112
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13
Probab=36.06 E-value=25 Score=32.15 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCCEEEEecC-----------CCchhhHHHHHHHHHHHcCCcC
Q 030804 130 EMIAKSCLEKGITKVAFDRG-----------GYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 130 ~~LAkra~e~GI~~VvfDRg-----------g~~YhGrVkAlad~aRe~GL~f 171 (171)
..+|+.+++.|++-+++|-+ ..++-+ ++++++.+.+.||+|
T Consensus 215 ~~~ad~~~~~G~~~~~IDdgW~~~~Gdw~~d~~kFP~-lk~lvd~lh~~Glk~ 266 (564)
T 1zy9_A 215 LKNLKLAKNFPFEVFQIDDAYEKDIGDWLVTRGDFPS-VEEMAKVIAENGFIP 266 (564)
T ss_dssp HHHHHHGGGTTCSEEEECTTSEEETTEEEEECTTCCC-HHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhcCCcEEEECcccccccCCcccCcccCCC-HHHHHHHHHHCCCEE
Confidence 34566667999999998843 234556 999999999999986
No 113
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=35.95 E-value=52 Score=25.14 Aligned_cols=46 Identities=11% Similarity=-0.042 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHHHHHHc-C-CCEEEEecCC--C-chhhHHHHHHHHHHHcCCc
Q 030804 121 TIEVSKKVGEMIAKSCLEK-G-ITKVAFDRGG--Y-PYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 121 n~~AA~~VG~~LAkra~e~-G-I~~VvfDRgg--~-~YhGrVkAlad~aRe~GL~ 170 (171)
|.++++. +++.+.+. | ..+|.|=.+. . ....|...|.++++++|+.
T Consensus 113 ~~~~g~~----~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~ 163 (289)
T 3brs_A 113 NIQAGIR----IGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNK 163 (289)
T ss_dssp HHHHHHH----HHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGG
T ss_pred hHHHHHH----HHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCc
Confidence 4455444 44555554 6 8888764332 2 2368999999999999864
No 114
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=35.87 E-value=42 Score=26.29 Aligned_cols=42 Identities=7% Similarity=0.077 Sum_probs=29.0
Q ss_pred HHHHHHHHHc--CCCEEEE--ecCCCchhhHHHHHHHHHHHcCCcC
Q 030804 130 EMIAKSCLEK--GITKVAF--DRGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 130 ~~LAkra~e~--GI~~Vvf--DRgg~~YhGrVkAlad~aRe~GL~f 171 (171)
+...+-+++. |.+++.| |........|.+.+.+++.++|+++
T Consensus 120 ~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~ 165 (295)
T 3lft_A 120 QQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTV 165 (295)
T ss_dssp HHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEE
Confidence 3444555666 8898854 5543223578999999999999863
No 115
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=35.82 E-value=54 Score=26.28 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCch-hhHHHHHHHHHHHcCCcC
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGGYPY-HGRIQALADAAREYGLQF 171 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~f 171 (171)
.++.+++-+.+.|.++|.+=-..+.| .++.+.|.+.+.+.|+++
T Consensus 127 ~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v 171 (375)
T 3i09_A 127 LAKGTGSAVVKQGGKTWFFLTADYAFGKALEKNTADVVKANGGKV 171 (375)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHcCCceEEEEecccHHHHHHHHHHHHHHHHcCCEE
Confidence 45566667777899998543223445 468999999999999863
No 116
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=35.76 E-value=50 Score=25.85 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=29.0
Q ss_pred HHHHHHHHHH-cCCCEEEEecCCCch-hhHHHHHHHHHHHcCCcC
Q 030804 129 GEMIAKSCLE-KGITKVAFDRGGYPY-HGRIQALADAAREYGLQF 171 (171)
Q Consensus 129 G~~LAkra~e-~GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~f 171 (171)
++.+++-+.+ .|.++|.+=.+...| .++.+.|.+.+.++|+++
T Consensus 125 ~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v 169 (346)
T 1usg_A 125 GPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANV 169 (346)
T ss_dssp HHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHHHHHHHcCCEE
Confidence 4555566555 488888542222445 478999999999999863
No 117
>4acy_A Endo-alpha-mannosidase; hydrolase, endomannosidase, glycoside hydrolase, CAZY, enzyme-carbohydrate interaction, mannose; HET: MSE; 1.69A {Bacteroides thetaiotaomicron} PDB: 4acz_A 4ad0_A* 4acz_B
Probab=35.55 E-value=20 Score=31.35 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC--CchhhHHHHHHHHHHHcCCcC
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGG--YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg--~~YhGrVkAlad~aRe~GL~f 171 (171)
+=+.=.+.|+++||+-+++++.+ ......+..+.+++.+.|++|
T Consensus 104 v~~~hi~~ak~aGIDgfal~w~~~~~~~d~~l~~~~~aA~~~g~k~ 149 (382)
T 4acy_A 104 IIRKHIRMHIKANVGVLSVTWWGESDYGNQSVSLLLDEAAKVGAKV 149 (382)
T ss_dssp HHHHHHHHHHHHTEEEEEEEECGGGGTTCHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHcCCCEEEEEecCCCCchHHHHHHHHHHHHHcCCEE
Confidence 33444567899999999999953 234577999999999999875
No 118
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=35.33 E-value=57 Score=25.86 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCch-hhHHHHHHHHHHHcCCc
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGGYPY-HGRIQALADAAREYGLQ 170 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~ 170 (171)
..++.+++-+++.|.++|.+=...+.| ..+.+.|.+.+.++|++
T Consensus 125 ~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~ 169 (368)
T 4eyg_A 125 QSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAFFKERFTAGGGE 169 (368)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHHHHHHHHHcCCE
Confidence 455666677777899988432222344 46799999999999985
No 119
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=35.07 E-value=43 Score=26.56 Aligned_cols=33 Identities=21% Similarity=0.092 Sum_probs=20.8
Q ss_pred cCCCEEEEe-cCCCchhhHHHHHHHHHHHcCCcC
Q 030804 139 KGITKVAFD-RGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 139 ~GI~~VvfD-Rgg~~YhGrVkAlad~aRe~GL~f 171 (171)
.||+.|+|- +-.+--.-.+..-++-|+++||++
T Consensus 109 ~gI~rVV~~~~d~~~~~p~~~~g~~~L~~aGI~V 142 (190)
T 2nyt_A 109 KNLRLLILVGRLFMWEEPEIQAALKKLKEAGCKL 142 (190)
T ss_pred CCccEEEEEeecCCcCChHHHHHHHHHHHCCCEE
Confidence 399999993 421100123456677889999874
No 120
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=35.07 E-value=51 Score=26.00 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
+.-+|..|++++.+.|.+-+..||+. .+...+++.+++.|
T Consensus 31 s~gIG~~ia~~l~~~G~~V~~~~r~~----~~~~~~~~~l~~~~ 70 (277)
T 2rhc_B 31 TSGIGLEIARRLGKEGLRVFVCARGE----EGLRTTLKELREAG 70 (277)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHhcC
Confidence 34689999999999998877889873 34445555555433
No 121
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=34.99 E-value=70 Score=25.51 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCC--------chhhHHHHHHHHHHHcC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGY--------PYHGRIQALADAAREYG 168 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~--------~YhGrVkAlad~aRe~G 168 (171)
+.-+|..+|+++.+.|.+-++.||+.. ....++..+++.+.+.|
T Consensus 37 s~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (299)
T 3t7c_A 37 ARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG 88 (299)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC
Confidence 346999999999999999889998632 12455666666665554
No 122
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=34.95 E-value=55 Score=31.52 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=37.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCEE---EEecCCCchhhH---------------HHHHHHHHHHcCC
Q 030804 119 GPTIEVSKKVGEMIAKSCLEKGITKV---AFDRGGYPYHGR---------------IQALADAAREYGL 169 (171)
Q Consensus 119 ~~n~~AA~~VG~~LAkra~e~GI~~V---vfDRgg~~YhGr---------------VkAlad~aRe~GL 169 (171)
+-|.+.++.+|+.+|+.+.+.||.-. +.|-......|| ..|+++++++.|+
T Consensus 73 t~d~~l~~~~g~~~g~E~ra~Gi~~~laP~vdi~r~P~~gR~~EsfgeDP~lv~~~a~a~v~GlQ~~gV 141 (845)
T 3abz_A 73 TFDRDLLETAGKLMAKESIAKNAAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGEGI 141 (845)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSEEECCBCCCCSSTTCTTGGGSCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCEEecceECCCcCCCCCcccccCCCCHHHHHHHHHHHHHHHhhCCe
Confidence 45889999999999999999999854 234211122222 5679999999886
No 123
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=34.95 E-value=64 Score=25.30 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCC---------chhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGY---------PYHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~---------~YhGrVkAlad~aRe~G 168 (171)
.-+|..+++++.+.|.+-+..||... .-..+++.+++.+++.|
T Consensus 25 ~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (280)
T 3pgx_A 25 RGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG 76 (280)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC
Confidence 46999999999999998888998421 12456666666666554
No 124
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=34.91 E-value=76 Score=25.40 Aligned_cols=39 Identities=23% Similarity=0.146 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
.-+|..|++++.+.|.+-+..||+. .+.+.+++.+++.|
T Consensus 44 ~gIG~aia~~L~~~G~~V~~~~r~~----~~~~~~~~~l~~~~ 82 (291)
T 3cxt_A 44 YGIGFAIASAYAKAGATIVFNDINQ----ELVDRGMAAYKAAG 82 (291)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHhcC
Confidence 4689999999999998777789863 34455555555443
No 125
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A*
Probab=34.69 E-value=61 Score=28.60 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=39.8
Q ss_pred CcHHHHHHHHHHHHHH-HHHcCCCEEEEecCC---------------CchhhHHHHHHHHHHHcCCcC
Q 030804 120 PTIEVSKKVGEMIAKS-CLEKGITKVAFDRGG---------------YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 120 ~n~~AA~~VG~~LAkr-a~e~GI~~VvfDRgg---------------~~YhGrVkAlad~aRe~GL~f 171 (171)
-|.+.-....+.|++. +++.|++-|+.|=|= .++-+=+++|++.+++.||+|
T Consensus 33 i~e~~i~~~ad~~~~~Gl~~~G~~~~~iDDgW~~~~rd~~G~~~~~~~kFP~Gl~~l~~~ih~~Glk~ 100 (404)
T 3hg3_A 33 ISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKL 100 (404)
T ss_dssp SSHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCSSCCTTSCCCBCTTTSTTHHHHHHHHHHHTTCEE
T ss_pred cCHHHHHHHHHHHHHCCcHhhCCeEEEECCCcCCCCCCCCCCeeeChhhcCCCHHHHHHHHHHCCCee
Confidence 4677777778877764 778999999998321 234445999999999999987
No 126
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=34.66 E-value=73 Score=25.13 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
+.-+|+.||+++.+.|..-+..||.. .+.+.+++.+.+.|
T Consensus 37 s~GIG~aia~~la~~G~~V~~~~r~~----~~~~~~~~~~~~~~ 76 (270)
T 3ftp_A 37 SRGIGRAIALELARRGAMVIGTATTE----AGAEGIGAAFKQAG 76 (270)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHhcC
Confidence 35799999999999999877889863 34455555555544
No 127
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=34.63 E-value=41 Score=29.89 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCch-hhHHHHHHHHHHHcCCcC
Q 030804 129 GEMIAKSCLEKGITKVAFDRGGYPY-HGRIQALADAAREYGLQF 171 (171)
Q Consensus 129 G~~LAkra~e~GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~f 171 (171)
.++|.+-+.+.||+.|+||+....+ .-|-+++.+.+.+.||+|
T Consensus 90 ~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~~ 133 (509)
T 1u3d_A 90 VASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAV 133 (509)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcEE
Confidence 3567777888999999999864444 456667777788888864
No 128
>4ad1_A Glycosyl hydrolase family 71; glycoside hydrolase GH99, CAZY, enzyme-carbohydra interaction, mannose glycosidase inhibition; 1.90A {Bacteroides xylanisolvens} PDB: 4ad2_A* 4ad3_A* 4ad4_A* 4ad5_A*
Probab=34.57 E-value=31 Score=29.98 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCC-ch-h-hHHHHHHHHHHHcCCcC
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGGY-PY-H-GRIQALADAAREYGLQF 171 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg~-~Y-h-GrVkAlad~aRe~GL~f 171 (171)
+=+.=.+.|++.||+-++|++.+. .+ . ..+..+.+++.+.|++|
T Consensus 105 v~~~h~~~Ak~aGIDgf~l~w~~~~~~~d~~~l~~~l~aA~~~~~k~ 151 (380)
T 4ad1_A 105 ILTKHMDMFVMARTGVLALTWWNEQDETEAKRIGLILDAADKKKIKV 151 (380)
T ss_dssp HHHHHHHHHHHHTEEEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHcCCCEEEEEecCCCCcccHHHHHHHHHHHHHcCCeE
Confidence 334445778999999999998542 23 3 66778888899988875
No 129
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=34.43 E-value=49 Score=25.94 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
.-+|+.+|+++.+.|.+-+..||.. .-..+...+++.+++.|
T Consensus 21 ~GIG~aia~~la~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~ 62 (262)
T 3ksu_A 21 KNLGALTAKTFALESVNLVLHYHQA-KDSDTANKLKDELEDQG 62 (262)
T ss_dssp SHHHHHHHHHHTTSSCEEEEEESCG-GGHHHHHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHCCCEEEEEecCc-cCHHHHHHHHHHHHhcC
Confidence 4589999999999999877888753 33456666776666554
No 130
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=34.06 E-value=75 Score=24.84 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCC---------chhhHHHHHHHHHHHcC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGY---------PYHGRIQALADAAREYG 168 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~---------~YhGrVkAlad~aRe~G 168 (171)
+.-+|+.+|+++.+.|.+-+..||.+. ....++..+++.+.+.|
T Consensus 20 s~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (277)
T 3tsc_A 20 ARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN 72 (277)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC
Confidence 346899999999999998888998532 13455666666555544
No 131
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=34.05 E-value=34 Score=31.11 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCch-hhHHHHHHHHHHHcCCcC
Q 030804 130 EMIAKSCLEKGITKVAFDRGGYPY-HGRIQALADAAREYGLQF 171 (171)
Q Consensus 130 ~~LAkra~e~GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~f 171 (171)
++|.+-+.+.||+.|++++....| .-|-+++.+.+.+.||+|
T Consensus 93 ~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI~~ 135 (537)
T 3fy4_A 93 EVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEV 135 (537)
T ss_dssp HHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCCeE
Confidence 567788889999999999975455 356678888889999864
No 132
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=34.02 E-value=70 Score=24.91 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
-+|..+++++.+.|.+-+..||+. .+.+.+++.+++.|
T Consensus 22 gIG~aia~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~~~ 59 (264)
T 3ucx_A 22 ALGTTLARRCAEQGADLVLAARTV----ERLEDVAKQVTDTG 59 (264)
T ss_dssp THHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCcCEEEEEeCCH----HHHHHHHHHHHhcC
Confidence 489999999999999877889863 45556666665544
No 133
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=33.70 E-value=52 Score=27.98 Aligned_cols=73 Identities=19% Similarity=0.149 Sum_probs=47.9
Q ss_pred EEEEEEeCCCCcEEEEEecCCcc-cccccCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEE-EecCCCchhhHHHHHHHHH
Q 030804 87 LYVQVIDDTKMHTLASASTMQKP-ISEELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVA-FDRGGYPYHGRIQALADAA 164 (171)
Q Consensus 87 iyAQvIdd~~~ktLasaST~ek~-ik~~l~~~~~~n~~AA~~VG~~LAkra~e~GI~~Vv-fDRgg~~YhGrVkAlad~a 164 (171)
+.--||.+.+..=.+-.||-... -+.. ...-.+++|. .-+++.|+..|- |.-+|.++-.-++|+++++
T Consensus 137 ~VNaLVSPTG~~G~VkISTGp~Sas~~~---~~~V~vetAi-------aml~dmG~~SvKffPM~Gl~~leEl~avAkAc 206 (275)
T 3m6y_A 137 WINSLVSPTGKVGYVNISTGPISAAGEE---KAIVPIKTAI-------ALVRDMGGNSLKYFPMKGLAHEEEYRAVAKAC 206 (275)
T ss_dssp EEEEEEBCCSSTTEEECCCSTTGGGSSS---CCEEEHHHHH-------HHHHHHTCCEEEECCCTTTTTHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcceEEeccCCCccccCC---CceeeHHHHH-------HHHHHcCCCeeeEeecCCcccHHHHHHHHHHH
Confidence 33345566554445555555433 1111 1123566654 347889999995 4679999999999999999
Q ss_pred HHcCC
Q 030804 165 REYGL 169 (171)
Q Consensus 165 Re~GL 169 (171)
-++|+
T Consensus 207 a~~g~ 211 (275)
T 3m6y_A 207 AEEGF 211 (275)
T ss_dssp HHHTC
T ss_pred HHcCc
Confidence 99997
No 134
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=33.68 E-value=18 Score=28.60 Aligned_cols=43 Identities=16% Similarity=0.314 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCCEEEEec-CCCchhhHHHHHHHHHHHcCCc
Q 030804 128 VGEMIAKSCLEKGITKVAFDR-GGYPYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDR-gg~~YhGrVkAlad~aRe~GL~ 170 (171)
.|++.++.|++.|++-|..+- ....+.+-+..+.+.+++.||+
T Consensus 70 tGei~~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl~ 113 (219)
T 2h6r_A 70 TGHILAEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLE 113 (219)
T ss_dssp TTCCCHHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTCE
T ss_pred cCchHHHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCCe
Confidence 456666899999999999943 2235667799999999999985
No 135
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=33.41 E-value=36 Score=26.26 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHHHHHHcC-CCEEEEecCC---CchhhHHHHHHHHHHHc-CCc
Q 030804 121 TIEVSKKVGEMIAKSCLEKG-ITKVAFDRGG---YPYHGRIQALADAAREY-GLQ 170 (171)
Q Consensus 121 n~~AA~~VG~~LAkra~e~G-I~~VvfDRgg---~~YhGrVkAlad~aRe~-GL~ 170 (171)
|.++++.+++.|.+++ | ..++.|=.|. .....|.+.|.++++++ |++
T Consensus 105 ~~~~g~~a~~~L~~~~---gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~ 156 (283)
T 2ioy_A 105 NVKGGEMAAEFIAKAL---KGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIK 156 (283)
T ss_dssp HHHHHHHHHHHHHHHT---TTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEE
T ss_pred hHHHHHHHHHHHHHHc---CCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCE
Confidence 4555555555554432 4 7788764332 22358999999999998 874
No 136
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=33.34 E-value=70 Score=25.64 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
+.-+|..|++++.+.|..-+..||+. .+...+++.+++.|
T Consensus 40 s~gIG~~la~~l~~~G~~V~~~~r~~----~~~~~~~~~l~~~~ 79 (301)
T 3tjr_A 40 ASGIGLATATEFARRGARLVLSDVDQ----PALEQAVNGLRGQG 79 (301)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHHHhcC
Confidence 35699999999999998877889863 45556666665544
No 137
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=33.09 E-value=75 Score=25.10 Aligned_cols=40 Identities=28% Similarity=0.398 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCC
Q 030804 121 TIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 169 (171)
Q Consensus 121 n~~AA~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL 169 (171)
-.+.|+.+|+.||+ .|+. |++ | -.-|-+.|.++++.++|-
T Consensus 43 ~~~~A~~lg~~LA~----~G~~-vVs--G--g~~GiM~aa~~gAl~~GG 82 (195)
T 1rcu_A 43 LRDICLELGRTLAK----KGYL-VFN--G--GRDGVMELVSQGVREAGG 82 (195)
T ss_dssp GHHHHHHHHHHHHH----TTCE-EEE--C--CSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH----CCCE-EEe--C--CHHHHHHHHHHHHHHcCC
Confidence 35789999999887 5776 555 5 368999999999999874
No 138
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=32.89 E-value=78 Score=25.59 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCC--------chhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGY--------PYHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~--------~YhGrVkAlad~aRe~G 168 (171)
.-+|..+|+++.+.|.+-++.||... ....+++.+++.+.+.|
T Consensus 56 ~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (317)
T 3oec_A 56 RGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG 106 (317)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcC
Confidence 35899999999999998888888621 11345556666555544
No 139
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=32.81 E-value=26 Score=30.97 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=31.2
Q ss_pred HHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCCc
Q 030804 132 IAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 132 LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL~ 170 (171)
+|..|.|.|++++-.+-|...-..+++.+++.++++|+.
T Consensus 97 lal~a~e~G~dklRINPGNig~~~~~~~vv~~ak~~~~p 135 (366)
T 3noy_A 97 YAFLSMEKGVHGIRINPGNIGKEEIVREIVEEAKRRGVA 135 (366)
T ss_dssp HHHHHHHTTCSEEEECHHHHSCHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHhCCCeEEECCcccCchhHHHHHHHHHHHcCCC
Confidence 566688899999888877554567899999999998863
No 140
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=32.60 E-value=29 Score=27.02 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCCcC
Q 030804 131 MIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 131 ~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL~f 171 (171)
...+.|.+.|++.|++--|.+.....+..+++.+.+.|+.+
T Consensus 88 ~~i~~A~~lGa~~v~~~~g~~~~~~~l~~l~~~a~~~Gv~l 128 (264)
T 1yx1_A 88 PTLRRAEACGAGWLKVSLGLLPEQPDLAALGRRLARHGLQL 128 (264)
T ss_dssp HHHHHHHHTTCSEEEEEEECCCSSCCHHHHHHHHTTSSCEE
T ss_pred HHHHHHHHcCCCEEEEecCCCCcHHHHHHHHHHHHhcCCEE
Confidence 34566778888888776555444447888888888888753
No 141
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Probab=32.43 E-value=47 Score=29.38 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCCEEEEec---CCCc--------h--------hhHHHHHHHHHHHcCCcC
Q 030804 130 EMIAKSCLEKGITKVAFDR---GGYP--------Y--------HGRIQALADAAREYGLQF 171 (171)
Q Consensus 130 ~~LAkra~e~GI~~VvfDR---gg~~--------Y--------hGrVkAlad~aRe~GL~f 171 (171)
+..|+.++++|.+-|++-- .||- | ..-|+.|++++|+.||+|
T Consensus 81 ~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~n~~~~~~krDlv~el~~A~rk~Glk~ 141 (450)
T 2wvv_A 81 KKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDEGIDV 141 (450)
T ss_dssp HHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTCSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCccccCCCCCCCccccCCCCCChHHHHHHHHHHcCCeE
Confidence 5688999999999998742 2221 1 367999999999999986
No 142
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=32.37 E-value=77 Score=24.81 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHc
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREY 167 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~ 167 (171)
.-+|..+++++.+.|.+-+..||+. .+...+++.+++.
T Consensus 31 ~gIG~aia~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~~ 68 (273)
T 1ae1_A 31 KGIGYAIVEELAGLGARVYTCSRNE----KELDECLEIWREK 68 (273)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHhc
Confidence 4689999999999998777789863 3344444444443
No 143
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=32.22 E-value=21 Score=29.60 Aligned_cols=17 Identities=41% Similarity=0.540 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHcCCc
Q 030804 154 HGRIQALADAAREYGLQ 170 (171)
Q Consensus 154 hGrVkAlad~aRe~GL~ 170 (171)
.-||+||.|++|.+||.
T Consensus 225 RqrikAlEdalR~HGLI 241 (242)
T 3c9i_A 225 RRRTKAMEDALRAHGLI 241 (242)
T ss_dssp HHHHHHHHHHHHHHTSB
T ss_pred HHHHHHHHHHHHhccCC
Confidence 35899999999999984
No 144
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=32.12 E-value=70 Score=24.80 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
+.-+|..+++++.+.|.+-+..||+. .+...+++.+++.|
T Consensus 16 s~gIG~~ia~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~~~ 55 (262)
T 1zem_A 16 GGNIGLATALRLAEEGTAIALLDMNR----EALEKAEASVREKG 55 (262)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHhcC
Confidence 34689999999999998877889863 34445555554433
No 145
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=31.86 E-value=87 Score=23.84 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHc
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREY 167 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~ 167 (171)
+.-+|..|++++.+.|.+-+..||+. .+...+++.+.+.
T Consensus 18 s~giG~~~a~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~~ 56 (253)
T 3qiv_A 18 GGGIGQAYAEALAREGAAVVVADINA----EAAEAVAKQIVAD 56 (253)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHCCCEEEEEcCCH----HHHHHHHHHHHhc
Confidence 34689999999999999877889863 3444455544443
No 146
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=31.80 E-value=81 Score=24.27 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHc
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREY 167 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~ 167 (171)
+.-+|..+++++.+.|.+-+..||+. .+...+++.+++.
T Consensus 23 s~gIG~~ia~~l~~~G~~V~~~~r~~----~~~~~~~~~l~~~ 61 (260)
T 2zat_A 23 TDGIGLAIARRLAQDGAHVVVSSRKQ----ENVDRTVATLQGE 61 (260)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHhc
Confidence 34789999999999998777789863 2344444444443
No 147
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=31.69 E-value=78 Score=24.82 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHH
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 166 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe 166 (171)
+.-+|..|++++.+.|.+-+..||+. .+...+++.+++
T Consensus 37 sggIG~~la~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~ 74 (286)
T 1xu9_A 37 SKGIGREMAYHLAKMGAHVVVTARSK----ETLQKVVSHCLE 74 (286)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHHHH
Confidence 34699999999999998777789863 344444444444
No 148
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=31.59 E-value=75 Score=24.76 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
.-+|+.+++++.+.|.+-+..||+. .+...+++.+++.|
T Consensus 20 ~gIG~aia~~l~~~G~~V~~~~r~~----~~~~~~~~~l~~~~ 58 (262)
T 3pk0_A 20 KGIGRGIATVFARAGANVAVAGRST----ADIDACVADLDQLG 58 (262)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHhhC
Confidence 4689999999999999777889863 34555555555443
No 149
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=31.54 E-value=83 Score=23.73 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHH
Q 030804 124 VSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 166 (171)
Q Consensus 124 AA~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe 166 (171)
++.-+|..|++++.+.|.+-+..||+. .+...+.+.+++
T Consensus 19 asggiG~~la~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~ 57 (255)
T 1fmc_A 19 AGAGIGKEIAITFATAGASVVVSDINA----DAANHVVDEIQQ 57 (255)
T ss_dssp TTSHHHHHHHHHHHTTTCEEEEEESCH----HHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHCCCEEEEEcCCH----HHHHHHHHHHHH
Confidence 345799999999999998777889863 234444444443
No 150
>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A*
Probab=31.40 E-value=46 Score=29.66 Aligned_cols=42 Identities=29% Similarity=0.323 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCCEEEEec---CCCc----------------hhhHHHHHHHHHHHcCCcC
Q 030804 130 EMIAKSCLEKGITKVAFDR---GGYP----------------YHGRIQALADAAREYGLQF 171 (171)
Q Consensus 130 ~~LAkra~e~GI~~VvfDR---gg~~----------------YhGrVkAlad~aRe~GL~f 171 (171)
+..|+.++++|.+-|++-- -||- -..-|+.|++++|+.||+|
T Consensus 108 ~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~ns~~~~pkrDlv~El~~A~rk~Glk~ 168 (455)
T 2zxd_A 108 QEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGDLAKAVREAGLRF 168 (455)
T ss_dssp HHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTTCSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhCCCEEEEEeeccCCccccCCCCCCCcccccCCCCChHHHHHHHHHHcCCeE
Confidence 5789999999999998752 1211 1356999999999999986
No 151
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=31.34 E-value=46 Score=26.46 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCc---hhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYP---YHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~---YhGrVkAlad~aRe~G 168 (171)
.-+|+.|++++.+.|.+-+..||.... ..+.++.+++.+.+.|
T Consensus 19 ~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 64 (285)
T 3sc4_A 19 RGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG 64 (285)
T ss_dssp SHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcC
Confidence 468999999999999987788997543 2234555555555443
No 152
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=31.25 E-value=72 Score=25.26 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
+.-+|..+++++.+.|..-++.||+.. +.+.+++.+.+.|
T Consensus 41 s~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~~~~~~ 80 (276)
T 3r1i_A 41 STGIGKKVALAYAEAGAQVAVAARHSD----ALQVVADEIAGVG 80 (276)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESSGG----GGHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcC
Confidence 357999999999999998778899632 3444455554443
No 153
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=31.21 E-value=64 Score=25.06 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
.-+|+.+++++.+.|.+-+..||+.. +.+.+++.+++.|
T Consensus 17 ~GIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~ 55 (252)
T 3h7a_A 17 DYIGAEIAKKFAAEGFTVFAGRRNGE----KLAPLVAEIEAAG 55 (252)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESSGG----GGHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHHHhcC
Confidence 35899999999999998778899643 3344444444433
No 154
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=30.87 E-value=87 Score=24.00 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHH
Q 030804 124 VSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 166 (171)
Q Consensus 124 AA~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe 166 (171)
+..-+|..|++++.+.|.+-+..||+. .+...+.+.+.+
T Consensus 22 asggiG~~la~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~ 60 (266)
T 1xq1_A 22 GTKGIGHAIVEEFAGFGAVIHTCARNE----YELNECLSKWQK 60 (266)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHh
Confidence 345799999999999998777789863 234444444443
No 155
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=30.86 E-value=53 Score=25.19 Aligned_cols=51 Identities=18% Similarity=0.108 Sum_probs=33.9
Q ss_pred CcHHHHHHHHHHHHHHHHHc--CCCE--EEEecC--CCc-hhhHHHHHHHHHHHc-CCc
Q 030804 120 PTIEVSKKVGEMIAKSCLEK--GITK--VAFDRG--GYP-YHGRIQALADAAREY-GLQ 170 (171)
Q Consensus 120 ~n~~AA~~VG~~LAkra~e~--GI~~--VvfDRg--g~~-YhGrVkAlad~aRe~-GL~ 170 (171)
.|.++++.+++.|.+++-.. |..+ +.|=.+ ... ...|.+.|.+++.++ |++
T Consensus 106 D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~ 164 (290)
T 2fn9_A 106 DNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFK 164 (290)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEE
T ss_pred CHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCE
Confidence 36677777777776653222 7777 655332 222 358999999999998 875
No 156
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=30.59 E-value=65 Score=24.90 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHH
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 166 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe 166 (171)
+.-+|..+++++.+.|.+-+..||+. .+...+++.+.+
T Consensus 21 s~gIG~aia~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~ 58 (252)
T 3f1l_A 21 SDGIGREAAMTYARYGATVILLGRNE----EKLRQVASHINE 58 (252)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHh
Confidence 34689999999999999877889873 344444444443
No 157
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=30.10 E-value=76 Score=24.64 Aligned_cols=39 Identities=28% Similarity=0.343 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
.-+|+.+++++.+.|.+-+..||.. .+...+++.+++.|
T Consensus 22 ~gIG~~ia~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~~~ 60 (256)
T 3gaf_A 22 AGIGRAIAGTFAKAGASVVVTDLKS----EGAEAVAAAIRQAG 60 (256)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEESSH----HHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHhcC
Confidence 4689999999999999877889863 34555666665544
No 158
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=30.00 E-value=89 Score=25.14 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCc
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYP 152 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~ 152 (171)
+.=+|+.+|+++.+.|..-+++||....
T Consensus 16 s~GIG~aia~~la~~Ga~Vv~~~r~~~~ 43 (258)
T 4gkb_A 16 ASGIGGAISMRLAEERAIPVVFARHAPD 43 (258)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred CCHHHHHHHHHHHHcCCEEEEEECCccc
Confidence 4468999999999999999999997543
No 159
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=29.94 E-value=1.2e+02 Score=23.22 Aligned_cols=41 Identities=10% Similarity=-0.055 Sum_probs=26.4
Q ss_pred HHHHHHHHHHH-cCCC-EEEEecCC--C-chhhHHHHHHHHHHHcC
Q 030804 128 VGEMIAKSCLE-KGIT-KVAFDRGG--Y-PYHGRIQALADAAREYG 168 (171)
Q Consensus 128 VG~~LAkra~e-~GI~-~VvfDRgg--~-~YhGrVkAlad~aRe~G 168 (171)
.|+.+++.+.+ .|.+ ++.|=.+. . ....|...|.+++.++|
T Consensus 112 ~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~ 157 (303)
T 3d02_A 112 FAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHY 157 (303)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHHHHHHHHhhC
Confidence 34444555555 6776 77654332 2 23579999999999876
No 160
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=29.84 E-value=96 Score=23.99 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
.-+|..|++++.+.|.+-+..||+. .+.+.+.+.+.+.|
T Consensus 39 ~gIG~~la~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~~~ 77 (262)
T 3rkr_A 39 RGIGAAIARKLGSLGARVVLTARDV----EKLRAVEREIVAAG 77 (262)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHHHHhC
Confidence 4699999999999999877889863 34555555555443
No 161
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=29.72 E-value=98 Score=23.86 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHH
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 166 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe 166 (171)
.-+|..+++++.+.|.+-+..||+. .+...+++.+++
T Consensus 19 ~giG~~ia~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~ 55 (260)
T 2ae2_A 19 RGIGYGIVEELASLGASVYTCSRNQ----KELNDCLTQWRS 55 (260)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHh
Confidence 4689999999999998777789863 234444444443
No 162
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=29.56 E-value=73 Score=25.60 Aligned_cols=44 Identities=16% Similarity=0.067 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCch-hhHHHHHHHHHHHcCCc
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGGYPY-HGRIQALADAAREYGLQ 170 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~ 170 (171)
..++.+++-+.+.|.++|.+=...+.| .+..+.|.+.+.+.|++
T Consensus 128 ~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~ 172 (379)
T 3n0w_A 128 SIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMNAAIRRELTAGGGQ 172 (379)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHcCCcEEEEEecccchhHHHHHHHHHHHHHcCCE
Confidence 345666667777899988543223444 46899999999999986
No 163
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=29.50 E-value=70 Score=25.27 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
.-+|..+|+++.+.|..-++.||+. .+...+++.+++.|
T Consensus 36 ~gIG~aia~~la~~G~~V~~~~r~~----~~~~~~~~~l~~~~ 74 (271)
T 4ibo_A 36 RGLGRAMAEGLAVAGARILINGTDP----SRVAQTVQEFRNVG 74 (271)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCSCH----HHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHhcC
Confidence 4689999999999998777778863 45556666665544
No 164
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=29.48 E-value=45 Score=26.46 Aligned_cols=49 Identities=24% Similarity=0.303 Sum_probs=32.6
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEEecCC--Cc-hhhHHHHHHHHHHHc-CCc
Q 030804 120 PTIEVSKKVGEMIAKSCLEKGITKVAFDRGG--YP-YHGRIQALADAAREY-GLQ 170 (171)
Q Consensus 120 ~n~~AA~~VG~~LAkra~e~GI~~VvfDRgg--~~-YhGrVkAlad~aRe~-GL~ 170 (171)
.|.++++.+++.|.+.+ .|..+|.|=.+. .. ...|...|.+++.++ |++
T Consensus 109 D~~~~g~~a~~~L~~~~--~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~ 161 (325)
T 2x7x_A 109 DNYEIGRSVGNYIASSL--KGKGNIVELTGLSGSTPAMERHQGFMAAISKFPDIK 161 (325)
T ss_dssp CHHHHHHHHHHHHHHHT--TTEEEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEE
T ss_pred CHHHHHHHHHHHHHHHc--CCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCE
Confidence 35566666665555443 388888764432 22 368999999999998 875
No 165
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=29.41 E-value=31 Score=26.51 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=33.5
Q ss_pred CcHHHHHHHHHHHHHHH-HHcCC--CEEEEecC---CCchhhHHHHHHHHHHHc-CCc
Q 030804 120 PTIEVSKKVGEMIAKSC-LEKGI--TKVAFDRG---GYPYHGRIQALADAAREY-GLQ 170 (171)
Q Consensus 120 ~n~~AA~~VG~~LAkra-~e~GI--~~VvfDRg---g~~YhGrVkAlad~aRe~-GL~ 170 (171)
.|.++++.+++.|.+++ -..|. .+|.|=.+ ......|...|.+++.++ |++
T Consensus 111 D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~ 168 (293)
T 3l6u_A 111 NNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLS 168 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEE
T ss_pred CHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcE
Confidence 46777777777777753 22211 26655332 233468999999999999 875
No 166
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=29.37 E-value=93 Score=24.23 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHH
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 166 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe 166 (171)
.-+|..|++++.+.|.+-+..||.. .+...+.+.+.+
T Consensus 41 ggIG~~la~~L~~~G~~V~~~~r~~----~~~~~~~~~l~~ 77 (272)
T 1yb1_A 41 HGIGRLTAYEFAKLKSKLVLWDINK----HGLEETAAKCKG 77 (272)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCEEEEEEcCH----HHHHHHHHHHHh
Confidence 4589999999999998877889863 234444444444
No 167
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=29.36 E-value=86 Score=24.87 Aligned_cols=43 Identities=23% Similarity=0.232 Sum_probs=30.3
Q ss_pred HHHHHHHHHHH-cCCCEEE--EecCCCch-hhHHHHHHHHHHHcCCcC
Q 030804 128 VGEMIAKSCLE-KGITKVA--FDRGGYPY-HGRIQALADAAREYGLQF 171 (171)
Q Consensus 128 VG~~LAkra~e-~GI~~Vv--fDRgg~~Y-hGrVkAlad~aRe~GL~f 171 (171)
.++.+++-+.+ .|.++|. ++.+ ..| .++.+.|.+.+.+.|+++
T Consensus 135 ~~~~~~~~l~~~~g~~~iaii~~~~-~~~~~~~~~~~~~~~~~~G~~v 181 (366)
T 3td9_A 135 QGAAMAVFAYKNLGAKRVVVFTDVE-QDYSVGLSNFFINKFTELGGQV 181 (366)
T ss_dssp HHHHHHHHHHHTSCCCEEEEEEETT-CHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHhcCCcEEEEEEeCC-CcHHHHHHHHHHHHHHHCCCEE
Confidence 45666666655 5999884 3433 345 467899999999999863
No 168
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=29.12 E-value=91 Score=24.59 Aligned_cols=46 Identities=11% Similarity=-0.124 Sum_probs=30.8
Q ss_pred CcHHHHHHHHHHHHHHHHHc-C-CCEEEEecCC--CchhhHHHHHHHHHHHcCC
Q 030804 120 PTIEVSKKVGEMIAKSCLEK-G-ITKVAFDRGG--YPYHGRIQALADAAREYGL 169 (171)
Q Consensus 120 ~n~~AA~~VG~~LAkra~e~-G-I~~VvfDRgg--~~YhGrVkAlad~aRe~GL 169 (171)
.|.++++.+++. +.+. | ..+|.|=.+. .....|...|.+++.++|+
T Consensus 156 D~~~~g~~a~~~----L~~~~Gg~~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~ 205 (342)
T 1jx6_A 156 DHAEGSRELATE----FGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNN 205 (342)
T ss_dssp CHHHHHHHHHHH----HHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHH----HHHHcCCCceEEEEEcCCcchhhHHHHHHHHHHHhCCC
Confidence 355555555554 4554 6 8888775433 2235799999999999886
No 169
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=29.05 E-value=94 Score=25.42 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCC-CchhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGG-YPYHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg-~~YhGrVkAlad~aRe~G 168 (171)
.-+|..+++++.+.|.+-+..+|.. .+-..+++.+.+.+++.|
T Consensus 15 ~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~ 58 (324)
T 3u9l_A 15 SGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDND 58 (324)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcC
Confidence 4589999999999998877778853 344566777777666655
No 170
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=28.94 E-value=97 Score=24.08 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCC--------chhhHHHHHHHHHHHcC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGY--------PYHGRIQALADAAREYG 168 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~--------~YhGrVkAlad~aRe~G 168 (171)
+.-+|..+++++.+.|.+-+..||... ....++..+++.+.+.|
T Consensus 22 s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (278)
T 3sx2_A 22 ARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG 73 (278)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC
Confidence 346999999999999999888898632 11345555555555444
No 171
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=28.88 E-value=75 Score=24.25 Aligned_cols=39 Identities=31% Similarity=0.489 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCC
Q 030804 122 IEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 169 (171)
Q Consensus 122 ~~AA~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL 169 (171)
.++|+.+|+.||++ |+.-| -||.. |-+.|.++++.++|-
T Consensus 19 ~~~A~~lg~~La~~----g~~lV---~Ggg~--GiM~aa~~gAl~~gG 57 (171)
T 1weh_A 19 YARWVRYGEVLAEE----GFGLA---CGGYQ--GGMEALARGVKAKGG 57 (171)
T ss_dssp HHHHHHHHHHHHHT----TEEEE---ECCSS--THHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHC----CCEEE---eCChh--hHHHHHHHHHHHcCC
Confidence 57888888888885 43322 25543 999999999999874
No 172
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A*
Probab=28.76 E-value=38 Score=31.06 Aligned_cols=47 Identities=21% Similarity=0.368 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCEE---EEe-----cCC---Cc-h-------hhHHHHHHHHHHHcCC
Q 030804 123 EVSKKVGEMIAKSCLEKGITKV---AFD-----RGG---YP-Y-------HGRIQALADAAREYGL 169 (171)
Q Consensus 123 ~AA~~VG~~LAkra~e~GI~~V---vfD-----Rgg---~~-Y-------hGrVkAlad~aRe~GL 169 (171)
+.++.+|+.+|+.+.+.||+-. +.| |+| ++ | .--..|++++++++|+
T Consensus 125 ~La~~~G~~~a~Elra~Gin~~fAPvvDv~r~P~~g~ig~rsfGEDP~lv~~~a~A~v~GlQ~~gV 190 (535)
T 3sql_A 125 ALAETMGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAV 190 (535)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEECCCBCCCCCCTTCSSSGGGSSCSSHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHhCCCEEecCeeccCCCCCCCCccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 5789999999999999999853 344 222 11 1 1124788999998886
No 173
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=28.68 E-value=1e+02 Score=24.00 Aligned_cols=40 Identities=28% Similarity=0.265 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
.-+|+.|++++.+.|.+-++.||... ...+.+.+.+.+.|
T Consensus 39 ~gIG~~la~~l~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~ 78 (271)
T 4iin_A 39 KGIGAEIAKTLASMGLKVWINYRSNA---EVADALKNELEEKG 78 (271)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHHHHHhcC
Confidence 46999999999999998778888532 33445555555444
No 174
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=28.56 E-value=63 Score=25.00 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=33.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHcC--CCEEEEecCC---CchhhHHHHHHHHHHHc-CCc
Q 030804 119 GPTIEVSKKVGEMIAKSCLEKG--ITKVAFDRGG---YPYHGRIQALADAAREY-GLQ 170 (171)
Q Consensus 119 ~~n~~AA~~VG~~LAkra~e~G--I~~VvfDRgg---~~YhGrVkAlad~aRe~-GL~ 170 (171)
..|..+++..++.|.+.+ | ..+|.|=.|. .....|...|.+++.++ |++
T Consensus 112 ~D~~~~g~~a~~~L~~~~---G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~ 166 (288)
T 1gud_A 112 TDNVAVGAKGASFIIDKL---GAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIK 166 (288)
T ss_dssp CCHHHHHHHHHHHHHHHH---GGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEE
T ss_pred CChHHHHHHHHHHHHHHh---CCCCCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcE
Confidence 346667676666666553 6 7788764332 22357999999999988 874
No 175
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=28.48 E-value=60 Score=29.05 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCch-hhHHHHHHHHHHHcC
Q 030804 129 GEMIAKSCLEKGITKVAFDRGGYPY-HGRIQALADAAREYG 168 (171)
Q Consensus 129 G~~LAkra~e~GI~~VvfDRgg~~Y-hGrVkAlad~aRe~G 168 (171)
-++|.+-+.+.||+.|++++....| .-+.+++.+.+.+.|
T Consensus 124 ~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~g 164 (525)
T 2j4d_A 124 EEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVG 164 (525)
T ss_dssp HHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHHHhcC
Confidence 4567777888999999999875555 356688888888888
No 176
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*
Probab=28.45 E-value=39 Score=31.72 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=30.6
Q ss_pred HHHHHHHcCCCEEEEecCCC------------------chhhHHHHHHHHHHHcCCcC
Q 030804 132 IAKSCLEKGITKVAFDRGGY------------------PYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 132 LAkra~e~GI~~VvfDRgg~------------------~YhGrVkAlad~aRe~GL~f 171 (171)
+++.+++.|++-+++|=|=+ ++-+=++++++.+.+.||+|
T Consensus 351 ~ad~~~~~G~~~~viDDgW~~~r~~~~~~~Gdw~~d~~kFP~Glk~lvd~ih~~Glk~ 408 (720)
T 2yfo_A 351 LAKEAASLGIDMVVMDDGWFGKRNDDNSSLGDWQVNETKLGGSLAELITRVHEQGMKF 408 (720)
T ss_dssp HHHHHHHHTCCEEEECSSSBTTCSSTTSCTTCCSBCHHHHTSCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCcEEEECcccccCCCcccccCCCCeeChhhcCccHHHHHHHHHHCCCEE
Confidence 67778999999999994321 12122999999999999986
No 177
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=28.31 E-value=83 Score=24.48 Aligned_cols=44 Identities=7% Similarity=-0.060 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEEecCC---CchhhHHHHHHHHHHHc
Q 030804 121 TIEVSKKVGEMIAKSCLEKGITKVAFDRGG---YPYHGRIQALADAAREY 167 (171)
Q Consensus 121 n~~AA~~VG~~LAkra~e~GI~~VvfDRgg---~~YhGrVkAlad~aRe~ 167 (171)
|.++++.+++.|.+ +.|..++.|=.+. .....|...|.+++.++
T Consensus 106 ~~~~g~~a~~~L~~---~~G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~ 152 (313)
T 3m9w_A 106 NEKVGELQAKALVD---IVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPY 152 (313)
T ss_dssp HHHHHHHHHHHHHH---HCSSEEEEEEESCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hCCCCcEEEEECCCCCccHHHHHHHHHHHHHhh
Confidence 45555555555542 4888888775432 22357999999999988
No 178
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=28.24 E-value=90 Score=25.15 Aligned_cols=44 Identities=20% Similarity=0.165 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCC------CchhhHHHHHHHHHHHcC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGG------YPYHGRIQALADAAREYG 168 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg------~~YhGrVkAlad~aRe~G 168 (171)
+.-+|..+|+++.+.|.+-++.||+. ..-..+...+++.+.+.|
T Consensus 36 s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (322)
T 3qlj_A 36 GGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG 85 (322)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcC
Confidence 45699999999999999888889861 111345666666666554
No 179
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=28.01 E-value=1.2e+02 Score=21.36 Aligned_cols=24 Identities=4% Similarity=-0.118 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGG 150 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg 150 (171)
.+|..+++.+.+.|++-++.|+..
T Consensus 13 ~vG~~la~~L~~~g~~V~vid~~~ 36 (153)
T 1id1_A 13 ILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCC
Confidence 689999999999999988999963
No 180
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=27.68 E-value=99 Score=23.82 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHH
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 166 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe 166 (171)
.-+|..+++++.+.|.+-+..||+. .+.+.+++.+++
T Consensus 17 ~gIG~~ia~~l~~~G~~V~~~~r~~----~~~~~~~~~l~~ 53 (263)
T 3ai3_A 17 SGIGLAIAEGFAKEGAHIVLVARQV----DRLHEAARSLKE 53 (263)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCEEEEEcCCH----HHHHHHHHHHHH
Confidence 4689999999999998767789863 334444444443
No 181
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=27.67 E-value=97 Score=24.25 Aligned_cols=39 Identities=10% Similarity=0.234 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHc
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREY 167 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~ 167 (171)
+.-+|..+++++.+.|.+-+..||+. .+...+++.+++.
T Consensus 20 s~gIG~aia~~l~~~G~~V~~~~r~~----~~~~~~~~~l~~~ 58 (281)
T 3svt_A 20 GSGIGKGVAAGLVAAGASVMIVGRNP----DKLAGAVQELEAL 58 (281)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHHh
Confidence 34689999999999999877889863 3444555555543
No 182
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=27.62 E-value=88 Score=24.72 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
+.-+|+.+|+++.+.|.+-++.||.. ..+.+.+++.+.+.|
T Consensus 38 s~GIG~aia~~la~~G~~V~~~~~~~---~~~~~~~~~~~~~~~ 78 (280)
T 4da9_A 38 RRGIGLGIARALAASGFDIAITGIGD---AEGVAPVIAELSGLG 78 (280)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCC---HHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHHHhcC
Confidence 34699999999999999888888632 245556666665544
No 183
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=27.45 E-value=92 Score=24.80 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
.-+|..+++++.+.|.+-++.||+. .....+.+.+.+.+.|
T Consensus 59 ~GIG~aia~~la~~G~~V~~~~~~~--~~~~~~~~~~~~~~~~ 99 (294)
T 3r3s_A 59 SGIGRAAAIAYAREGADVAINYLPA--EEEDAQQVKALIEECG 99 (294)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECCGG--GHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCc--chhHHHHHHHHHHHcC
Confidence 4589999999999998877888852 2233444444444444
No 184
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1
Probab=27.36 E-value=44 Score=28.21 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHHHHH-HHHcCCCEEEEecCCC---------------chhhHHHHHHHHHHHcCCcC
Q 030804 121 TIEVSKKVGEMIAKS-CLEKGITKVAFDRGGY---------------PYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 121 n~~AA~~VG~~LAkr-a~e~GI~~VvfDRgg~---------------~YhGrVkAlad~aRe~GL~f 171 (171)
|.+........+++. ..+.|++-|++|=|=+ ++-+-+++|++-+++.||+|
T Consensus 24 ~e~~i~~~ad~~~~~gl~~~G~~~v~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~ih~~Glk~ 90 (362)
T 1uas_A 24 NEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQGNFVPNRQTFPSGIKALADYVHAKGLKL 90 (362)
T ss_dssp CHHHHHHHHHHHHHTSHHHHTCCEEECCSSCBCSSCCTTSCCCBCTTTCTTCHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHHcCchhcCCcEEEECCCcCCCCCCCCCCeeEChhccCccHHHHHHHHHHCCCEe
Confidence 445555544444333 3678999999984321 23334999999999999986
No 185
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=27.36 E-value=1.2e+02 Score=27.34 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEEecCCCchh-----------hHHHHHHHHHHHc
Q 030804 121 TIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYH-----------GRIQALADAAREY 167 (171)
Q Consensus 121 n~~AA~~VG~~LAkra~e~GI~~VvfDRgg~~Yh-----------GrVkAlad~aRe~ 167 (171)
+.+.|-.-...+.++|.++|.+.|-||-.-..+. .|.+-|++.+.+.
T Consensus 105 ~~~~am~~a~e~i~~aI~AGFtSVMiD~S~~p~eeNi~lt~evva~rtaeL~~~A~~~ 162 (450)
T 3txv_A 105 PADEAMAKAEAMITAYAKAGFTKLHLDTSMGCAGEPTALPDATTAARAARLAAVAEDA 162 (450)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCEEEECCCBCCSSSCSBCCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEECCCCCchhhccchhHHHHHHHHHHHHHHHHHH
Confidence 5788888999999999999999999998766554 3556666666664
No 186
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7
Probab=27.17 E-value=1.5e+02 Score=26.36 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEEecCC------CchhhHH-----HHHHHHHHH
Q 030804 121 TIEVSKKVGEMIAKSCLEKGITKVAFDRGG------YPYHGRI-----QALADAARE 166 (171)
Q Consensus 121 n~~AA~~VG~~LAkra~e~GI~~VvfDRgg------~~YhGrV-----kAlad~aRe 166 (171)
+.+.|-.-++.+.++|.++|.+.|-||-.- ..|..-| +.+++-+.+
T Consensus 98 ~~~~am~~a~e~i~~aI~aGFtSVMiD~S~~~~~~~~pl~eNi~~~rt~elv~~Ah~ 154 (420)
T 2fiq_A 98 NVDAAMEKSVELVKAYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAES 154 (420)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEEEECCCSCCBTCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHhCCCEEEECCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 568888889999999999999999999876 5565555 445555544
No 187
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=27.15 E-value=88 Score=24.50 Aligned_cols=35 Identities=17% Similarity=0.029 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHH
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 166 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe 166 (171)
+|+.+|+++.+.|.+-++.||+. ...+.+++.+.+
T Consensus 20 IG~aiA~~la~~Ga~Vvi~~r~~----~~~~~~~~~~~~ 54 (256)
T 4fs3_A 20 IAFGVAKVLDQLGAKLVFTYRKE----RSRKELEKLLEQ 54 (256)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSG----GGHHHHHHHHGG
T ss_pred HHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHHHh
Confidence 79999999999999877888863 233444444444
No 188
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=27.09 E-value=91 Score=23.48 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRG 149 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRg 149 (171)
+.-+|..|++++.+.|.+-+..||.
T Consensus 16 sggiG~~~a~~l~~~G~~V~~~~r~ 40 (258)
T 3afn_B 16 SQGIGLATARLFARAGAKVGLHGRK 40 (258)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CChHHHHHHHHHHHCCCEEEEECCC
Confidence 3468999999999999887788997
No 189
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=27.04 E-value=90 Score=24.11 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.7
Q ss_pred HHHHHHHHcCCCEEEE-ecCC
Q 030804 131 MIAKSCLEKGITKVAF-DRGG 150 (171)
Q Consensus 131 ~LAkra~e~GI~~Vvf-DRgg 150 (171)
.++++|++.|++.+.+ |...
T Consensus 20 e~v~~A~~~Gl~~iaiTDH~~ 40 (267)
T 2yxo_A 20 AYLEEARAKGLKGVVFTDHSP 40 (267)
T ss_dssp HHHHHHHHTTCSEEEEEEECC
T ss_pred HHHHHHHHcCCCEEEEcCCCC
Confidence 6889999999999987 6543
No 190
>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=26.89 E-value=1.1e+02 Score=24.42 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHc
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREY 167 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~ 167 (171)
.-+|..|++++.+.|.+-+..||+. .+...+++.+++.
T Consensus 36 ~gIG~aia~~L~~~G~~V~~~~r~~----~~~~~~~~~l~~~ 73 (297)
T 1xhl_A 36 NGIGRSAAVIFAKEGAQVTITGRNE----DRLEETKQQILKA 73 (297)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHhc
Confidence 4689999999999999877889863 3444555555443
No 191
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=26.78 E-value=1.1e+02 Score=24.54 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHH
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRI 157 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrV 157 (171)
-.+|..|++.+++.|.+-++++|.......+.
T Consensus 20 G~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~ 51 (346)
T 3i6i_A 20 GFIGQFVATASLDAHRPTYILARPGPRSPSKA 51 (346)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECSSCCCHHHH
T ss_pred cHHHHHHHHHHHHCCCCEEEEECCCCCChhHH
Confidence 36899999999999987778999753333343
No 192
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=26.02 E-value=70 Score=25.25 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCC
Q 030804 124 VSKKVGEMIAKSCLEKGITKVAFDRGG 150 (171)
Q Consensus 124 AA~~VG~~LAkra~e~GI~~VvfDRgg 150 (171)
++.-+|+.|++++.+.|.+-+..||+.
T Consensus 37 as~gIG~aia~~L~~~G~~V~~~~r~~ 63 (276)
T 2b4q_A 37 GSRGIGQMIAQGLLEAGARVFICARDA 63 (276)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 345799999999999998877889863
No 193
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=25.88 E-value=40 Score=26.46 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=23.2
Q ss_pred HHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCCcC
Q 030804 132 IAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 132 LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL~f 171 (171)
=++...+.||++|+|--......+ ..+-|+++||++
T Consensus 136 Ca~aIi~agI~rVVy~~~~~~~~~----~~~~L~~aGIeV 171 (184)
T 2hvw_A 136 CTKALLQAGVKKITYNTAYRIHPF----AIELMTQKEVEY 171 (184)
T ss_dssp HHHHHHHHTEEEEEEEECCSCCHH----HHHHHHHHTCEE
T ss_pred HHHHHHHHCCCeEEEEecCCCCHH----HHHHHHHCCCEE
Confidence 356667899999999432111111 277889999874
No 194
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=25.71 E-value=64 Score=29.02 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCchh-hHHHHHHHHHHHcCCcC
Q 030804 129 GEMIAKSCLEKGITKVAFDRGGYPYH-GRIQALADAAREYGLQF 171 (171)
Q Consensus 129 G~~LAkra~e~GI~~VvfDRgg~~Yh-GrVkAlad~aRe~GL~f 171 (171)
.++|.+-+.+.||+.|++++.-..|. -+-+++.+.+.+.||+|
T Consensus 113 ~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi~~ 156 (543)
T 2wq7_A 113 AEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRV 156 (543)
T ss_dssp HHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHcCCCEEEEecCcCHHHHHHHHHHHHHHHHcCCEE
Confidence 45677788899999999998744553 55577778888888864
No 195
>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, Pro structure initiative, midwest center for structural genomic unknown function; 1.75A {Pyrococcus horikoshii} SCOP: c.56.7.1
Probab=25.61 E-value=88 Score=26.61 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=28.4
Q ss_pred HHHHHHHc---CCCEEEEecCCCchhhHHHHHHHHHHHcCCcC
Q 030804 132 IAKSCLEK---GITKVAFDRGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 132 LAkra~e~---GI~~VvfDRgg~~YhGrVkAlad~aRe~GL~f 171 (171)
+.++|.++ |++.+++|+.+ ...+--+.+.+.+.+.||++
T Consensus 252 ~l~~ai~~~~~~~~~~~iD~K~-~k~~~R~~i~~~l~~lgi~v 293 (298)
T 2gfq_A 252 VMIKALNRFGEKVEAIYVDWKG-SRGETRQLAKSLAQELGLEF 293 (298)
T ss_dssp HHHHHHTCBSSCCCEEEEESTT-SCHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHhhcCCCCEEEEecCC-CCHHHHHHHHHHHHHCCCEE
Confidence 34667776 89999999987 44555567777777878764
No 196
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*
Probab=25.53 E-value=1.2e+02 Score=23.47 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEec-CCCchhhHHHHHHHHHHH
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDR-GGYPYHGRIQALADAARE 166 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDR-gg~~YhGrVkAlad~aRe 166 (171)
.-+|..|++++.+.|.+-+..|| + ..+...+++.+++
T Consensus 21 ~gIG~~ia~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~~ 58 (276)
T 1mxh_A 21 RRIGHSIAVRLHQQGFRVVVHYRHS----EGAAQRLVAELNA 58 (276)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCC----hHHHHHHHHHHHH
Confidence 46899999999999988778898 4 2344455555443
No 197
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A*
Probab=25.49 E-value=80 Score=26.40 Aligned_cols=51 Identities=22% Similarity=0.323 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHHHH-HHHcCCCEEEEecC--------C------CchhhHHHHHHHHHHHcCCcC
Q 030804 121 TIEVSKKVGEMIAKS-CLEKGITKVAFDRG--------G------YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 121 n~~AA~~VG~~LAkr-a~e~GI~~VvfDRg--------g------~~YhGrVkAlad~aRe~GL~f 171 (171)
+.+........|++. .++.|++-|+.|=| | .++-.=+++|+|-+.+.||+|
T Consensus 34 se~~i~~~ad~~~~~gl~~~Gy~yv~iDdgW~~~rd~~G~~~~d~~rFP~G~k~ladyih~~Glk~ 99 (400)
T 4do4_A 34 SEQLFMEMADRMAQDGWRDMGYTYLNIDDCWIGGRDASGRLMPDPKRFPHGIPFLADYVHSLGLKL 99 (400)
T ss_dssp SHHHHHHHHHHHHHSSHHHHTCCEEECCSSCEEEECTTCCEEECTTTSTTCHHHHHHHHHHTTCEE
T ss_pred cHHHHHHHHHHHHHCcchhhCCeEEEECCCcccCCCCCCCEeECcccCCcccHHHHHHHHHCCceE
Confidence 345566667777776 67899999999832 1 122223999999999999987
No 198
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=25.45 E-value=70 Score=22.96 Aligned_cols=51 Identities=10% Similarity=0.064 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHHHHHHHHcCC-CEE--EEecCCCc---hhhHHHHHHHHHHHcCCcC
Q 030804 121 TIEVSKKVGEMIAKSCLEKGI-TKV--AFDRGGYP---YHGRIQALADAAREYGLQF 171 (171)
Q Consensus 121 n~~AA~~VG~~LAkra~e~GI-~~V--vfDRgg~~---YhGrVkAlad~aRe~GL~f 171 (171)
+.+.+...+-.+|..++++|- ++| +|.=-+-+ -..-++.+.+.+++.|+++
T Consensus 18 d~~~~~~~al~~A~~a~~~G~~~eV~i~~~G~~v~L~~~~~~l~~~~~~~~~~Gv~~ 74 (117)
T 2fb6_A 18 NKDTVFNMLAMYALNSKNRGWWKHINIILWGASVKLVANDTQVQTEILEMLQSGITI 74 (117)
T ss_dssp CHHHHHHTHHHHHHHHHHHTSCSEEEEEECSHHHHHHHHCHHHHHHHHHHHHHTCEE
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCcEEEEEECCeeeeccCCccHHHHHHHHHHcCCeE
Confidence 445565679999999999995 665 45422222 2455888889999998753
No 199
>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A*
Probab=25.42 E-value=61 Score=30.45 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=30.6
Q ss_pred HHHHHHHcCCCEEEEecCC-------------C-----chhhHHHHHHHHHHHcCCcC
Q 030804 132 IAKSCLEKGITKVAFDRGG-------------Y-----PYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 132 LAkra~e~GI~~VvfDRgg-------------~-----~YhGrVkAlad~aRe~GL~f 171 (171)
+++.+++.|++-+++|=|= + ++-+-++++++.+++.||+|
T Consensus 355 ~ad~~~~~G~~~~viDDGW~~~r~~~~~~~Gd~~~d~~kFP~Glk~lv~~ih~~Glk~ 412 (732)
T 2xn2_A 355 IVDKAKKLGLEMFVLDDGWFGHRDDDNSSLGDWKVYKKKFPNGLGHFADYVHEQGLKF 412 (732)
T ss_dssp HHHHHHHTTCCEEEECSSSBTTCSSTTSCTTCCSBCTTTCTTCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCcEEEEcCcccccCCCCccccCceeeCchhcCccHHHHHHHHHHcCCEE
Confidence 5677789999999998321 1 23334999999999999986
No 200
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=25.38 E-value=88 Score=24.49 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHH
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 166 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe 166 (171)
.-+|..+++++.+.|.+-+..||.. .+...+++.+.+
T Consensus 16 ~gIG~~ia~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~ 52 (280)
T 1xkq_A 16 NGIGRTTAILFAQEGANVTITGRSS----ERLEETRQIILK 52 (280)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHH
Confidence 4689999999999998877789863 334444444443
No 201
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=25.31 E-value=1.2e+02 Score=23.60 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHc
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREY 167 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~ 167 (171)
+.-+|..+++++.+.|.+-+..||+. .+...+++.+++.
T Consensus 19 s~gIG~aia~~l~~~G~~V~~~~r~~----~~~~~~~~~l~~~ 57 (267)
T 3t4x_A 19 TAGIGKAIATSLVAEGANVLINGRRE----ENVNETIKEIRAQ 57 (267)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHhh
Confidence 34699999999999999877889873 3445555555443
No 202
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=25.23 E-value=61 Score=27.27 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGG 150 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg 150 (171)
.+|..+|++++..|.+-++|||..
T Consensus 147 ~IG~~vA~~l~~~G~~V~~~dr~~ 170 (324)
T 3evt_A 147 QIGQSLAAKASALGMHVIGVNTTG 170 (324)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCc
Confidence 689999999999999888999865
No 203
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=25.22 E-value=91 Score=24.74 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHc
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREY 167 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~ 167 (171)
-+|..+|+++.+.|..-+..||+. .+...+++.+.+.
T Consensus 39 GIG~aia~~la~~G~~V~~~~r~~----~~~~~~~~~l~~~ 75 (283)
T 3v8b_A 39 GIGRATALALAADGVTVGALGRTR----TEVEEVADEIVGA 75 (283)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHhc
Confidence 589999999999999877889863 3445555555443
No 204
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=25.20 E-value=1.2e+02 Score=23.68 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 124 VSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 124 AA~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
++.-+|+.+++++.+.|.+-++.|+.. ......+++.+++.|
T Consensus 26 as~gIG~aia~~l~~~G~~V~~~~~~~---~~~~~~~~~~~~~~~ 67 (270)
T 3is3_A 26 SGRGIGAAVAVHLGRLGAKVVVNYANS---TKDAEKVVSEIKALG 67 (270)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESSC---HHHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHHHhcC
Confidence 345699999999999998777767642 234555555555544
No 205
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=25.11 E-value=88 Score=24.21 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRG 149 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRg 149 (171)
+.-+|..+++++.+.|.+-+..||+
T Consensus 15 s~gIG~aia~~l~~~G~~V~~~~r~ 39 (257)
T 3imf_A 15 SSGMGKGMATRFAKEGARVVITGRT 39 (257)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4569999999999999987788986
No 206
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=25.08 E-value=63 Score=27.06 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCc------hhhHHHHHHHHHHHc
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGGYP------YHGRIQALADAAREY 167 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg~~------YhGrVkAlad~aRe~ 167 (171)
.+|..+|++++..|.+-+.|||.... +++. ..+.+.+.+.
T Consensus 149 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~-~~l~ell~~a 194 (315)
T 3pp8_A 149 VLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGR-EELRAFLNQT 194 (315)
T ss_dssp HHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESH-HHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhccc-CCHHHHHhhC
Confidence 68999999999999998899986542 2332 4555555544
No 207
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=25.00 E-value=1.2e+02 Score=23.30 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=36.0
Q ss_pred EEEEEEeCCCCcEEEEEecCCcccccccCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEEEecCCCchh
Q 030804 87 LYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYH 154 (171)
Q Consensus 87 iyAQvIdd~~~ktLasaST~ek~ik~~l~~~~~~n~~AA~~VG~~LAkra~e~GI~~VvfDRgg~~Yh 154 (171)
+|+.|.....+.+|+.....+.. ++.+......+.+.|.++.....-.+..++-++|.+|
T Consensus 4 ~ya~IaR~~d~~iLa~~~d~~~~--------~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fh 63 (196)
T 2nut_C 4 LLTMIARVADGLPLAASMQEDEQ--------SGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFH 63 (196)
T ss_dssp CCEEEEETTTCCEEEEECCCC-------------CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEE
T ss_pred EEEEEEEcCCCcEEEEeeccccc--------ccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEE
Confidence 57888877677777765443221 1124566778888888887652335666666665554
No 208
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=24.96 E-value=91 Score=24.14 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHH
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 166 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe 166 (171)
+.-+|+.+++++.+.|.+-+..||+. .+...+++.+.+
T Consensus 22 s~gIG~~ia~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~ 59 (267)
T 1iy8_A 22 GSGLGRATAVRLAAEGAKLSLVDVSS----EGLEASKAAVLE 59 (267)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHh
Confidence 45799999999999998877889863 334444444443
No 209
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=24.95 E-value=1.2e+02 Score=23.83 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
.-+|+.||+++.+.|.+-++.||.. .+....+++.+.+.|
T Consensus 38 ~gIG~aia~~la~~G~~V~~~~~~~---~~~~~~~~~~~~~~~ 77 (269)
T 4dmm_A 38 RGIGRAIALELAAAGAKVAVNYASS---AGAADEVVAAIAAAG 77 (269)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESSC---HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCC---hHHHHHHHHHHHhcC
Confidence 4689999999999998877888742 344555555555544
No 210
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=24.92 E-value=1.2e+02 Score=23.30 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGG 150 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg 150 (171)
+|..+++++.+.|..-+..||+.
T Consensus 35 IG~~~a~~l~~~G~~V~~~~r~~ 57 (266)
T 3o38_A 35 IGSTTARRALLEGADVVISDYHE 57 (266)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCH
T ss_pred hHHHHHHHHHHCCCEEEEecCCH
Confidence 89999999999998877889863
No 211
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=24.78 E-value=97 Score=23.15 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=27.3
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCC--EEEEecCCCc
Q 030804 120 PTIEVSKKVGEMIAKSCLEKGIT--KVAFDRGGYP 152 (171)
Q Consensus 120 ~n~~AA~~VG~~LAkra~e~GI~--~VvfDRgg~~ 152 (171)
-+.+.|..++...-+.|.+.|+. -.+.|++|..
T Consensus 12 lt~~~A~~l~~aa~~~A~~~g~~v~IaVvD~~G~l 46 (145)
T 2a2l_A 12 ITLAAAQQMAAAVEKKATEINVAVVFSVVDRGGNT 46 (145)
T ss_dssp ECHHHHHHHHHHHHHHHHHTTCCCEEEEEETTSCE
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEEEECCCCE
Confidence 36899999999999999999964 4478988754
No 212
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=24.70 E-value=1.2e+02 Score=23.72 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRG 149 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRg 149 (171)
+.-+|+.|++++.+.|.+-+..||+
T Consensus 30 s~gIG~~ia~~l~~~G~~V~~~~r~ 54 (267)
T 1vl8_A 30 SRGLGFGIAQGLAEAGCSVVVASRN 54 (267)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3468999999999999887778986
No 213
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Probab=24.68 E-value=1.3e+02 Score=24.58 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCC-----chhhHHHHHHHHHHHcC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGY-----PYHGRIQALADAAREYG 168 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~-----~YhGrVkAlad~aRe~G 168 (171)
..-+|..+++++.+.|.+-++.|++.. +-..+...+++.+++.|
T Consensus 18 s~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~ 66 (319)
T 1gz6_A 18 GGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG 66 (319)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhC
Confidence 346999999999999987777787531 22345666666665544
No 214
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=24.59 E-value=74 Score=25.62 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHc
Q 030804 124 VSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREY 167 (171)
Q Consensus 124 AA~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~ 167 (171)
++.-+|..|++++.+.|.+-+..||+.. +...+++.+++.
T Consensus 49 as~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~l~~~ 88 (293)
T 3rih_A 49 GTKGIGRGIATVFARAGANVAVAARSPR----ELSSVTAELGEL 88 (293)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESSGG----GGHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhh
Confidence 4457999999999999998778898743 234444444443
No 215
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Probab=24.46 E-value=1.2e+02 Score=25.81 Aligned_cols=48 Identities=13% Similarity=0.244 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEE---EEe--cCC-----Cch------hhH-HHHHHHHHHHcCC
Q 030804 122 IEVSKKVGEMIAKSCLEKGITKV---AFD--RGG-----YPY------HGR-IQALADAAREYGL 169 (171)
Q Consensus 122 ~~AA~~VG~~LAkra~e~GI~~V---vfD--Rgg-----~~Y------hGr-VkAlad~aRe~GL 169 (171)
.+.++.+|+++|+.+.+.||+-. +.| |++ .-| -++ ..|++++++++|+
T Consensus 91 ~~la~~~g~~~a~E~ra~Gi~~~~aPv~Dv~~~~~~ig~rsfgeDP~lv~~~a~a~v~Glq~~gV 155 (340)
T 2oxn_A 91 VELAEQGGWLMAAELIAHDVDLSFAPVLDMGFACKAIGNRAFGEDVQTVLKHSSAFLRGMKAVGM 155 (340)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEECCCBCCCCSCSTTTGGGSSCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEecCccCCCCCCCcCcCCCCCCCHHHHHHHHHHHHHHHHHCCc
Confidence 79999999999999999999853 233 221 112 122 5789999999887
No 216
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=24.32 E-value=1.2e+02 Score=23.81 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
+.-+|+.|++++.+.|..-++.|+.. ..+.+.+++.+++.|
T Consensus 40 s~GIG~aia~~la~~G~~V~~~~~~~---~~~~~~~~~~l~~~~ 80 (271)
T 3v2g_A 40 SRGIGAAIAKRLALEGAAVALTYVNA---AERAQAVVSEIEQAG 80 (271)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESSC---HHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHHHHhcC
Confidence 34689999999999999877777642 345566666666554
No 217
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=24.26 E-value=84 Score=25.29 Aligned_cols=43 Identities=26% Similarity=0.246 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHc-CCCEEEEecCCCch-hhHHHHHHHHHHHcCCc
Q 030804 128 VGEMIAKSCLEK-GITKVAFDRGGYPY-HGRIQALADAAREYGLQ 170 (171)
Q Consensus 128 VG~~LAkra~e~-GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~ 170 (171)
.+..+++-+.+. |.++|.+=-....| .++.+.|.+.+.+.|++
T Consensus 129 ~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~ 173 (392)
T 3lkb_A 129 QVVALLEYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELGLQ 173 (392)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCCchhhhHHHHHHHHHHHcCCe
Confidence 445566666664 99988542222455 57789999999999986
No 218
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=24.04 E-value=1.1e+02 Score=24.11 Aligned_cols=39 Identities=23% Similarity=0.397 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYG 168 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~G 168 (171)
+.-+|..||+++.+.|..-+..||. .....+++.+.+.|
T Consensus 40 s~GIG~aia~~la~~G~~V~~~~r~-----~~~~~~~~~~~~~~ 78 (273)
T 3uf0_A 40 GSGIGRAIAHGYARAGAHVLAWGRT-----DGVKEVADEIADGG 78 (273)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESS-----THHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHCCCEEEEEcCH-----HHHHHHHHHHHhcC
Confidence 3469999999999999987778875 23344444444433
No 219
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=24.02 E-value=1.2e+02 Score=24.56 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHcCC
Q 030804 124 VSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 169 (171)
Q Consensus 124 AA~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~GL 169 (171)
++.=+|+.+|++..+.|.+-++.||... +..++.+++.|-
T Consensus 17 as~GIG~aiA~~la~~Ga~Vvi~~r~~~------~~~~~~~~~~g~ 56 (247)
T 4hp8_A 17 ANTGLGQAIAVGLAAAGAEVVCAARRAP------DETLDIIAKDGG 56 (247)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESSCC------HHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHcCCEEEEEeCCcH------HHHHHHHHHhCC
Confidence 3456999999999999999888999743 345566666653
No 220
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=23.95 E-value=1.3e+02 Score=23.32 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGG 150 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg 150 (171)
.-+|..+|+++.+.|..-+..||+.
T Consensus 22 ~GIG~~~a~~L~~~G~~V~~~~r~~ 46 (311)
T 3o26_A 22 KGIGFEICKQLSSNGIMVVLTCRDV 46 (311)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4589999999999998777788863
No 221
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=23.86 E-value=79 Score=25.13 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHH
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 166 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe 166 (171)
+.-+|..+++++.+.|.+-+..||+. .+...+++.+.+
T Consensus 17 s~GIG~aia~~la~~G~~V~~~~r~~----~~~~~~~~~~~~ 54 (280)
T 3tox_A 17 SSGIGRAAALLFAREGAKVVVTARNG----NALAELTDEIAG 54 (280)
T ss_dssp TSHHHHHHHHHHHHTTCEEEECCSCH----HHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHHHh
Confidence 34689999999999999877788863 344445554443
No 222
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125}
Probab=23.56 E-value=82 Score=27.41 Aligned_cols=52 Identities=23% Similarity=0.252 Sum_probs=39.9
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEEecCC----------------------------Cchhh-----HHHHHHHHHHH
Q 030804 120 PTIEVSKKVGEMIAKSCLEKGITKVAFDRGG----------------------------YPYHG-----RIQALADAARE 166 (171)
Q Consensus 120 ~n~~AA~~VG~~LAkra~e~GI~~VvfDRgg----------------------------~~YhG-----rVkAlad~aRe 166 (171)
-|.+......+.+++..++.|++-++.|=|= .++-+ =+++|++.+++
T Consensus 26 i~e~~i~~~ad~~~~gl~~~G~~~~~iDDgW~~~~~~~~~y~~~~~~~~d~~G~~~~~~~kFP~~~~~~Gl~~l~~~ih~ 105 (433)
T 3cc1_A 26 VTEEEVLGNAEYMANHLKKYGWEYIVVDIQWYEPTANSSAYNPFAPLCMDEYGRLLPATNRFPSAKNGAGFKPLSDAIHD 105 (433)
T ss_dssp CCHHHHHHHHHHHHHHTGGGTCCEEEECSCTTCCCTTSTTCCTTSCSCBCTTSCBCCCTTTCGGGTTTTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcchhhCCeEEEECCCcCCCCCcccccccccccccCCCCCEeECCccCCCcccCCCHHHHHHHHHH
Confidence 4666777777777888899999999998321 12223 49999999999
Q ss_pred cCCcC
Q 030804 167 YGLQF 171 (171)
Q Consensus 167 ~GL~f 171 (171)
.||+|
T Consensus 106 ~Glk~ 110 (433)
T 3cc1_A 106 LGLKF 110 (433)
T ss_dssp TTCEE
T ss_pred cCCee
Confidence 99986
No 223
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=23.50 E-value=88 Score=24.49 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGY 151 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~ 151 (171)
.-+|+.|++++.+.|.+-++.||+..
T Consensus 37 ~gIG~aia~~l~~~G~~V~~~~r~~~ 62 (260)
T 3gem_A 37 QRVGLHCALRLLEHGHRVIISYRTEH 62 (260)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCChH
Confidence 46999999999999998888999754
No 224
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=23.19 E-value=1.1e+02 Score=28.70 Aligned_cols=51 Identities=16% Similarity=0.405 Sum_probs=37.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCEE---EEe---c---CC--Cc-h------hhH-HHHHHHHHHHcCC
Q 030804 119 GPTIEVSKKVGEMIAKSCLEKGITKV---AFD---R---GG--YP-Y------HGR-IQALADAAREYGL 169 (171)
Q Consensus 119 ~~n~~AA~~VG~~LAkra~e~GI~~V---vfD---R---gg--~~-Y------hGr-VkAlad~aRe~GL 169 (171)
+-|.+.++.+|+.+++.+.+.||+-. +.| | +| +. | -|+ ..|+++++++.|+
T Consensus 84 t~d~~l~~~~g~~~g~E~ra~Gi~~~laP~vd~v~r~P~~gR~~e~fgeDP~l~~~~a~a~v~Glq~~gV 153 (713)
T 3zyz_A 84 TWDVNLIRERGQFIGEEVKASGIHVILGPVAGPLGKTPQGGRNWEGFGVDPYLTGIAMGQTINGIQSVGV 153 (713)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCSEECCCBCSSCCCSTTCTTGGGTTCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCEEECCeecccCCCCCCCcccccccCCHHHHHHHHHHHHHHHhhCCe
Confidence 35789999999999999999999865 345 2 22 11 1 122 5788999999886
No 225
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=23.11 E-value=71 Score=27.26 Aligned_cols=40 Identities=13% Similarity=0.302 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCCEEEE-ecCCCchh---------hHHHHHHHHHHHcCCc
Q 030804 131 MIAKSCLEKGITKVAF-DRGGYPYH---------GRIQALADAAREYGLQ 170 (171)
Q Consensus 131 ~LAkra~e~GI~~Vvf-DRgg~~Yh---------GrVkAlad~aRe~GL~ 170 (171)
.|+++|++.|++.+.+ |.+.+..+ ..+..+.+.+++.||.
T Consensus 38 elv~~A~~~Gl~~iaiTDH~~~~~~~~~~~~d~~~g~~~~~~~a~~~gi~ 87 (343)
T 3e38_A 38 VRVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQAEKLGIL 87 (343)
T ss_dssp HHHHHHHHTTCSEECCEEESSCCTTTTTBCCCTTHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHcCCCEEEECCCCcccccccccchhHHHHHHHHHHHHHhCCCE
Confidence 3889999999999855 87543222 2334445556677765
No 226
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=23.08 E-value=54 Score=26.44 Aligned_cols=26 Identities=15% Similarity=0.003 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCc
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGGYP 152 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg~~ 152 (171)
.+|..+|+.+.+.|.+-++|||...+
T Consensus 25 ~mG~~~A~~l~~~G~~V~~~dr~~~~ 50 (296)
T 3qha_A 25 NMGAPMATRMTEWPGGVTVYDIRIEA 50 (296)
T ss_dssp TTHHHHHHHHTTSTTCEEEECSSTTT
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 37999999999999988899998543
No 227
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=23.02 E-value=1.4e+02 Score=22.33 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRG 149 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRg 149 (171)
.-+|..|++++.+.|.+-+..||+
T Consensus 17 ggiG~~la~~l~~~G~~V~~~~r~ 40 (248)
T 2pnf_A 17 RGIGRAIAEKLASAGSTVIITGTS 40 (248)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred chHHHHHHHHHHHCCCEEEEEeCC
Confidence 468999999999999877788986
No 228
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=23.00 E-value=1.4e+02 Score=18.55 Aligned_cols=22 Identities=5% Similarity=-0.044 Sum_probs=18.9
Q ss_pred ecCCCchhhHHHHHHHHHHHcCCc
Q 030804 147 DRGGYPYHGRIQALADAAREYGLQ 170 (171)
Q Consensus 147 DRgg~~YhGrVkAlad~aRe~GL~ 170 (171)
|+ ...+|.|-.+.+.++++|+.
T Consensus 53 D~--~~~y~~vv~vmd~l~~aG~~ 74 (74)
T 2jwk_A 53 AK--EVPYEEVIKALNLLHLAGIK 74 (74)
T ss_dssp CT--TSCHHHHHHHHHHHHHTTCC
T ss_pred CC--CCCHHHHHHHHHHHHHcCCC
Confidence 55 47789999999999999984
No 229
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*
Probab=22.84 E-value=1.6e+02 Score=22.31 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHH
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 166 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe 166 (171)
+.-+|..|++++.+.|.+-+..||.. ..+...+.+.+.+
T Consensus 16 sggiG~~~a~~l~~~G~~V~~~~r~~---~~~~~~~~~~l~~ 54 (261)
T 1gee_A 16 STGLGKSMAIRFATEKAKVVVNYRSK---EDEANSVLEEIKK 54 (261)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESSC---HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHCCCEEEEEcCCC---hHHHHHHHHHHHh
Confidence 34689999999999998877789831 1334444444443
No 230
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=22.69 E-value=1.1e+02 Score=23.47 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=36.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHcC--CCEE--EE-e-cCCCchhhHHHHHHHHHHHcCC
Q 030804 119 GPTIEVSKKVGEMIAKSCLEKG--ITKV--AF-D-RGGYPYHGRIQALADAAREYGL 169 (171)
Q Consensus 119 ~~n~~AA~~VG~~LAkra~e~G--I~~V--vf-D-Rgg~~YhGrVkAlad~aRe~GL 169 (171)
..|..+++..++.|.+.+-..| ..++ ++ . .+......|.+.|.+++.++|+
T Consensus 108 ~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~ 164 (306)
T 8abp_A 108 LAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGF 164 (306)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHHHHHHHHHHHHHHTC
T ss_pred cChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHHHHHHHHHHHHhcCC
Confidence 3578899999999998866664 2233 22 2 2223346899999999999986
No 231
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=22.68 E-value=1.2e+02 Score=23.44 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGGY 151 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg~ 151 (171)
.+|..|++.+++.|.+-++++|...
T Consensus 15 ~iG~~l~~~L~~~g~~V~~l~R~~~ 39 (308)
T 1qyc_A 15 YIGRHVAKASLDLGHPTFLLVREST 39 (308)
T ss_dssp TTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred HHHHHHHHHHHhCCCCEEEEECCcc
Confidence 4799999999999987778999754
No 232
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A
Probab=22.61 E-value=1.1e+02 Score=24.92 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCCEEEE-ecCCCchhhHHHHHHHHHHHcCCcC
Q 030804 131 MIAKSCLEKGITKVAF-DRGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 131 ~LAkra~e~GI~~Vvf-DRgg~~YhGrVkAlad~aRe~GL~f 171 (171)
.|+++|+++|++.+.+ |.+. ..| +..+.+.+++.||++
T Consensus 21 elv~~A~~~Gl~~iaiTDH~~--~~g-~~~~~~~~~~~gi~v 59 (292)
T 2yb1_A 21 EVIDRAAARAPALLALTDHDC--TGG-LAEAAAAAARRGIPF 59 (292)
T ss_dssp HHHHHHHTTCCSEEEECCBTC--CTT-HHHHHHHHHHTTCCE
T ss_pred HHHHHHHHCCCCEEEEecCCc--ccc-HHHHHHHHHHcCCEE
Confidence 4899999999999987 7753 223 234555667778753
No 233
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*
Probab=22.61 E-value=1e+02 Score=27.62 Aligned_cols=42 Identities=19% Similarity=0.468 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCCEEEEe---cCCCc---------------h----hhHHHHHHHHHHHcCCcC
Q 030804 130 EMIAKSCLEKGITKVAFD---RGGYP---------------Y----HGRIQALADAAREYGLQF 171 (171)
Q Consensus 130 ~~LAkra~e~GI~~VvfD---Rgg~~---------------Y----hGrVkAlad~aRe~GL~f 171 (171)
+..|+.++++|.+-|++- ..||- | ..-|+.|++++|+.||+|
T Consensus 65 ~~W~~~~k~aGakyvvlt~kHHdGF~lw~S~~t~~~v~~~p~~~~krDiv~el~~A~r~~gl~~ 128 (478)
T 3ues_A 65 DQWMDALVAGGMAGVILTCKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKF 128 (478)
T ss_dssp HHHHHHHHHTTCSEEEEEEECTTCCBSSCCTTCSCBGGGSSGGGGTCCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCEEEEeEEecCCccccCCCCCCcccccCCccCCCCCHHHHHHHHHHHcCCeE
Confidence 568899999999999884 12221 1 256999999999999986
No 234
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=22.60 E-value=1.1e+02 Score=24.28 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGG 150 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg 150 (171)
+.-+|..+|+++.+.|.+-+..||+.
T Consensus 42 s~GIG~aia~~la~~G~~V~~~~r~~ 67 (281)
T 4dry_A 42 GTGVGRGIAQALSAEGYSVVITGRRP 67 (281)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35799999999999999877889873
No 235
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=22.43 E-value=73 Score=21.56 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRG 149 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRg 149 (171)
.+|..+++.+.+.|.+-+++|+.
T Consensus 16 ~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 16 RFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp HHHHHHHHHHHHTTCCCEEEESC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCC
Confidence 68999999999999987789986
No 236
>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea}
Probab=22.40 E-value=84 Score=27.06 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHH-HHHHcCCCEEEEecCCC---------------chhhHHHHHHHHHHHcCCcC
Q 030804 121 TIEVSKKVGEMIAK-SCLEKGITKVAFDRGGY---------------PYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 121 n~~AA~~VG~~LAk-ra~e~GI~~VvfDRgg~---------------~YhGrVkAlad~aRe~GL~f 171 (171)
|.+........+++ -.++.|++-|++|=|=+ ++-+-+++|++-+++.||+|
T Consensus 24 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~r~~~G~~~~~~~kFP~Gl~~l~~~i~~~Glk~ 90 (397)
T 3a5v_A 24 DEQLILDAAKAIASSGLKDLGYNYVIIDDCWQKNERESSKTLLADPTKFPRGIKPLVDDIHNLGLKA 90 (397)
T ss_dssp CHHHHHHHHHHHHHHTHHHHTCCEEECCSSCBCSSCCTTSCCCBCTTTCTTCHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHHcCCcccCceEEEECCCcCCCCCCCCCCeEEChhcCCcCHHHHHHHHHHcCCEE
Confidence 55666666666666 44558999999984321 23334999999999999986
No 237
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=22.32 E-value=66 Score=25.69 Aligned_cols=43 Identities=9% Similarity=-0.077 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCCEEEE-ecCCCch-hhHHHHHHHHHHHcCCcC
Q 030804 128 VGEMIAKSCLEKGITKVAF-DRGGYPY-HGRIQALADAAREYGLQF 171 (171)
Q Consensus 128 VG~~LAkra~e~GI~~Vvf-DRgg~~Y-hGrVkAlad~aRe~GL~f 171 (171)
-++.+++.+.+.|.+++.+ +-+ +.| .+-.++|.+.+.+.|.++
T Consensus 111 ~~~~~a~~~~~~g~k~~~ii~~~-~~yg~~~~~~f~~~~~~~Gg~v 155 (327)
T 3ckm_A 111 EAESAANKMWNDGVRNPLVAMPQ-NDLGQRVGNAFNVRWQQLAGTD 155 (327)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEES-SHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhcCCeeEEEEecC-ChHHHHHHHHHHHHHHHCCCeE
Confidence 4667788888889988743 333 467 477889999999998764
No 238
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=22.12 E-value=1.6e+02 Score=23.03 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGG 150 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg 150 (171)
+.-+|..+++++.+.|.+-+..||..
T Consensus 38 s~gIG~~ia~~l~~~G~~V~~~~r~~ 63 (283)
T 1g0o_A 38 GRGIGREMAMELGRRGCKVIVNYANS 63 (283)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34699999999999998877788864
No 239
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=22.04 E-value=80 Score=22.54 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGG 150 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg 150 (171)
.+|..+++.+.+.|.+-+++||+.
T Consensus 29 ~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 29 RLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCG
T ss_pred HHHHHHHHHHHhCCCeEEEEECCH
Confidence 689999999999999777899864
No 240
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=22.01 E-value=2.1e+02 Score=21.63 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCCCc-----h-------hhHHHHHHHHHHHcCCcC
Q 030804 123 EVSKKVGEMIAKSCLEKGITKVAFDRGGYP-----Y-------HGRIQALADAAREYGLQF 171 (171)
Q Consensus 123 ~AA~~VG~~LAkra~e~GI~~VvfDRgg~~-----Y-------hGrVkAlad~aRe~GL~f 171 (171)
+.+...-+...+.|.+.|++.|++--|... + -..+..+++-+.+.|+.+
T Consensus 79 ~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 139 (275)
T 3qc0_A 79 EKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVPL 139 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 344555667788899999999987654332 1 244667777777888763
No 241
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=21.99 E-value=1.6e+02 Score=22.37 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEec
Q 030804 124 VSKKVGEMIAKSCLEKGITKVAFDR 148 (171)
Q Consensus 124 AA~~VG~~LAkra~e~GI~~VvfDR 148 (171)
++.-+|..|++++.+.|.+-+..||
T Consensus 29 asggiG~~la~~l~~~G~~v~~~~r 53 (274)
T 1ja9_A 29 AGRGIGRGIAIELGRRGASVVVNYG 53 (274)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCchHHHHHHHHHHHCCCEEEEEcC
Confidence 3457899999999999987777888
No 242
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=21.86 E-value=1.1e+02 Score=24.00 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRG 149 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRg 149 (171)
.-+|..|++++.+.|.+-+.+||+
T Consensus 54 ggIG~~la~~L~~~G~~V~~~~r~ 77 (285)
T 2c07_A 54 RGIGREIAKMLAKSVSHVICISRT 77 (285)
T ss_dssp SHHHHHHHHHHTTTSSEEEEEESS
T ss_pred cHHHHHHHHHHHHcCCEEEEEcCC
Confidence 468999999999999876677775
No 243
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=21.84 E-value=1.5e+02 Score=23.10 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHH
Q 030804 124 VSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 166 (171)
Q Consensus 124 AA~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe 166 (171)
++.-+|..+++++.+.|.+-+..||+. .+...+++.+.+
T Consensus 28 as~gIG~aia~~l~~~G~~V~~~~r~~----~~~~~~~~~l~~ 66 (266)
T 4egf_A 28 ATKGIGADIARAFAAAGARLVLSGRDV----SELDAARRALGE 66 (266)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHH
Confidence 345699999999999999877889863 334444444443
No 244
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=21.74 E-value=92 Score=27.96 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=28.0
Q ss_pred HHHHHHcCCCEEEEecCCCchh-hHHHHHHHHHH--HcCCcC
Q 030804 133 AKSCLEKGITKVAFDRGGYPYH-GRIQALADAAR--EYGLQF 171 (171)
Q Consensus 133 Akra~e~GI~~VvfDRgg~~Yh-GrVkAlad~aR--e~GL~f 171 (171)
.+-+.+.||+.|++|...+... .+-+++.+.++ +.||.|
T Consensus 122 ~~L~~~~~a~~V~~d~ep~~~~r~rD~~V~~~l~~~~~gi~~ 163 (506)
T 3umv_A 122 PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAV 163 (506)
T ss_dssp HHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred HHHHHhcCCCEEEeccChhHHHHHHHHHHHHHHhhccCCeEE
Confidence 3445668999999998754431 45788888887 678764
No 245
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=21.67 E-value=1.2e+02 Score=24.99 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=21.3
Q ss_pred HHHHHHHcCCCEEEE-ecCCCchhhHHHHHHHHHHH
Q 030804 132 IAKSCLEKGITKVAF-DRGGYPYHGRIQALADAARE 166 (171)
Q Consensus 132 LAkra~e~GI~~Vvf-DRgg~~YhGrVkAlad~aRe 166 (171)
+++++.+.|++.|.+ |-.|...-..+..+.+.+++
T Consensus 155 ~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~ 190 (293)
T 3ewb_X 155 AVQTAIDAGATVINIPDTVGYTNPTEFGQLFQDLRR 190 (293)
T ss_dssp HHHHHHHTTCCEEEEECSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 345556667766654 66666666666666666654
No 246
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=21.64 E-value=89 Score=21.06 Aligned_cols=23 Identities=43% Similarity=0.452 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEecC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRG 149 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRg 149 (171)
.+|..+++.+.+.|.+-+++||.
T Consensus 14 ~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 14 RVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHHHhCCCeEEEEECC
Confidence 58999999999999887789986
No 247
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=21.63 E-value=1.1e+02 Score=24.32 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=29.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCC--EEEEecCCCc
Q 030804 118 SGPTIEVSKKVGEMIAKSCLEKGIT--KVAFDRGGYP 152 (171)
Q Consensus 118 ~~~n~~AA~~VG~~LAkra~e~GI~--~VvfDRgg~~ 152 (171)
..-+.+.|..++...-++|.|.|+. -.|.|++|..
T Consensus 63 ~~ltl~~A~~l~~aA~~~A~~~g~pV~IaVvD~~G~l 99 (192)
T 3fpw_A 63 THLTLEAATKAARAAVEAAEKDGRHVSVAVVDRNGNT 99 (192)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTSCE
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeCCCCE
Confidence 4568999999999999999999974 4478998854
No 248
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=21.58 E-value=1.3e+02 Score=22.47 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEE-ecC
Q 030804 126 KKVGEMIAKSCLEKGITKVAF-DRG 149 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~Vvf-DRg 149 (171)
.-+|..|++++.+.|.+-+.. +|.
T Consensus 15 ggiG~~~a~~l~~~G~~V~~~~~r~ 39 (247)
T 2hq1_A 15 RGLGKAIAWKLGNMGANIVLNGSPA 39 (247)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred chHHHHHHHHHHHCCCEEEEEcCcC
Confidence 468999999999999876667 555
No 249
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=21.56 E-value=1.3e+02 Score=25.19 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=30.1
Q ss_pred HHHHHHcCCCEEEEe-----cCCCchhhHHHHHHHHHHHcCCcC
Q 030804 133 AKSCLEKGITKVAFD-----RGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 133 Akra~e~GI~~VvfD-----Rgg~~YhGrVkAlad~aRe~GL~f 171 (171)
-+.+++.|++.|-.. .+|+-+-..+..+++.++++||++
T Consensus 33 ~~ilk~~G~N~VRi~~w~~P~~g~~~~~~~~~~~~~A~~~GlkV 76 (332)
T 1hjs_A 33 ENILAANGVNTVRQRVWVNPADGNYNLDYNIAIAKRAKAAGLGV 76 (332)
T ss_dssp HHHHHHTTCCEEEEEECSSCTTCTTSHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHCCCCEEEEeeeeCCCCCcCCHHHHHHHHHHHHHCCCEE
Confidence 466678999988653 345566788999999999999974
No 250
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A*
Probab=21.56 E-value=71 Score=26.89 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGG 150 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg 150 (171)
.+|..+|++++..|.+-++|||..
T Consensus 151 ~IG~~vA~~l~~~G~~V~~~d~~~ 174 (334)
T 2pi1_A 151 RIGSRVAMYGLAFGMKVLCYDVVK 174 (334)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHCcCEEEEECCCc
Confidence 689999999999999888999865
No 251
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=21.50 E-value=72 Score=26.94 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGG 150 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg 150 (171)
.+|..+|++++..|.+-+.|||..
T Consensus 150 ~IG~~vA~~l~~~G~~V~~~dr~~ 173 (324)
T 3hg7_A 150 SIGQHIAHTGKHFGMKVLGVSRSG 173 (324)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCh
Confidence 689999999999999888999864
No 252
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=21.46 E-value=1.7e+02 Score=22.62 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHH
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 166 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe 166 (171)
.-+|+.+++++.+.|..-+..||+. .+...+++.+.+
T Consensus 18 ~GIG~aia~~l~~~G~~V~~~~r~~----~~~~~~~~~l~~ 54 (265)
T 3lf2_A 18 SGIGLATVELLLEAGAAVAFCARDG----ERLRAAESALRQ 54 (265)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHH
Confidence 4689999999999999877889863 344455555443
No 253
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...
Probab=21.45 E-value=1.5e+02 Score=23.19 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHH
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAR 165 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aR 165 (171)
.-+|..+++++.+.|.+-+..||+. ..+...+++.++
T Consensus 33 ~gIG~aia~~L~~~G~~V~~~~r~~---~~~~~~~~~~l~ 69 (288)
T 2x9g_A 33 KRIGRAIAVKLHQTGYRVVIHYHNS---AEAAVSLADELN 69 (288)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEESSC---HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHHHHH
Confidence 4689999999999998877889874 134445555544
No 254
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=21.35 E-value=1.4e+02 Score=23.60 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGG 150 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg 150 (171)
.-+|..|++++.+.|.+-++.||..
T Consensus 57 ~GIG~aia~~la~~G~~V~~~~r~~ 81 (291)
T 3ijr_A 57 SGIGRAVSIAFAKEGANIAIAYLDE 81 (291)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4589999999999999877889864
No 255
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=21.33 E-value=79 Score=26.39 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGGY 151 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg~ 151 (171)
.+|..+|++++..|.+-++|||...
T Consensus 156 ~IG~~~A~~l~~~G~~V~~~d~~~~ 180 (331)
T 1xdw_A 156 RIGRVAAQIFHGMGATVIGEDVFEI 180 (331)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHCCCEEEEECCCcc
Confidence 6899999999999998889998653
No 256
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=21.31 E-value=76 Score=25.69 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGGY 151 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg~ 151 (171)
.+|..||..+.+.|.+-++|||...
T Consensus 31 ~mG~~~A~~l~~~G~~V~~~dr~~~ 55 (310)
T 3doj_A 31 IMGKAMSMNLLKNGFKVTVWNRTLS 55 (310)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 5899999999999997779999753
No 257
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=21.30 E-value=70 Score=26.53 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGGY 151 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg~ 151 (171)
.+|..+|++++..|.+-+.|||...
T Consensus 132 ~IG~~vA~~l~~~G~~V~~~dr~~~ 156 (290)
T 3gvx_A 132 GIGRRVAHLAKAFGMRVIAYTRSSV 156 (290)
T ss_dssp HHHHHHHHHHHHHTCEEEEECSSCC
T ss_pred chhHHHHHHHHhhCcEEEEEecccc
Confidence 6899999999999998889999753
No 258
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=21.27 E-value=1e+02 Score=25.57 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCCCc---hhhHHHHHHHHHHHcC
Q 030804 124 VSKKVGEMIAKSCLEKGITKVAFDRGGYP---YHGRIQALADAAREYG 168 (171)
Q Consensus 124 AA~~VG~~LAkra~e~GI~~VvfDRgg~~---YhGrVkAlad~aRe~G 168 (171)
++.-||..|++++.+.|.+-+..||.... .-+.+..+++.+++.|
T Consensus 53 as~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g 100 (346)
T 3kvo_A 53 ASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVG 100 (346)
T ss_dssp TTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcC
Confidence 34579999999999999987788987532 2344555555555544
No 259
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=21.23 E-value=67 Score=27.37 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGG 150 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg 150 (171)
.+|..+|++++..|.+-++|||..
T Consensus 183 ~IG~~vA~~l~~~G~~V~~~dr~~ 206 (345)
T 4g2n_A 183 RIGRAIATRARGFGLAIHYHNRTR 206 (345)
T ss_dssp HHHHHHHHHHHTTTCEEEEECSSC
T ss_pred hhHHHHHHHHHHCCCEEEEECCCC
Confidence 689999999999999888999964
No 260
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=21.17 E-value=2.1e+02 Score=25.36 Aligned_cols=50 Identities=24% Similarity=0.357 Sum_probs=38.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCEEE--EecCCCchhhH--HHHHHHHHHHcCCcC
Q 030804 119 GPTIEVSKKVGEMIAKSCLEKGITKVA--FDRGGYPYHGR--IQALADAAREYGLQF 171 (171)
Q Consensus 119 ~~n~~AA~~VG~~LAkra~e~GI~~Vv--fDRgg~~YhGr--VkAlad~aRe~GL~f 171 (171)
.-|.+.++.+|..++.-..+.|...|+ +|- ++.+. ..+++.++..+|+++
T Consensus 40 ~lt~~~~~~ig~A~~~~l~~~~~~~VvVG~D~---R~ss~~~~~a~a~gl~a~Gi~V 93 (485)
T 3uw2_A 40 TLDADVARSIGRAFGSEVRAQGGDAVVVARDG---RLSGPELVGALADGLRAAGVDV 93 (485)
T ss_dssp TBCHHHHHHHHHHHHHHHHHTTCCEEEEEECS---CTTHHHHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEEEECC---CcCHHHHHHHHHHHHHHCCCEE
Confidence 468899999999999998887767765 563 45555 457889999999863
No 261
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=21.13 E-value=85 Score=27.51 Aligned_cols=43 Identities=26% Similarity=0.441 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCchhh-----HHHHHHHHHHHcCCc
Q 030804 128 VGEMIAKSCLEKGITKVAFDRGGYPYHG-----RIQALADAAREYGLQ 170 (171)
Q Consensus 128 VG~~LAkra~e~GI~~VvfDRgg~~YhG-----rVkAlad~aRe~GL~ 170 (171)
.-..+.+.|.++||+.+++=-.|+.-.| .-..+.+.++++|+.
T Consensus 76 ~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~ 123 (457)
T 2csu_A 76 FVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR 123 (457)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCE
Confidence 3355677888899999988777775433 267888999999985
No 262
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=21.07 E-value=1.7e+02 Score=22.37 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCch---hhHHHHHHHHHHHcCCcC
Q 030804 130 EMIAKSCLEKGITKVAFDRGGYPY---HGRIQALADAAREYGLQF 171 (171)
Q Consensus 130 ~~LAkra~e~GI~~VvfDRgg~~Y---hGrVkAlad~aRe~GL~f 171 (171)
+.+.+.+.+.|++.|-+......+ ...++.+.+.+.++||++
T Consensus 33 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i 77 (257)
T 3lmz_A 33 DTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTG 77 (257)
T ss_dssp HHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 346677889999999765432222 467889999999999863
No 263
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=21.04 E-value=1e+02 Score=24.37 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGY 151 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~ 151 (171)
+.-+|+.+|+++.+.|.+-+..||+..
T Consensus 42 s~GIG~aia~~la~~G~~V~~~~r~~~ 68 (275)
T 4imr_A 42 SRGIGAAIAEGLAGAGAHVILHGVKPG 68 (275)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 346899999999999998778898643
No 264
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Probab=20.95 E-value=88 Score=27.21 Aligned_cols=51 Identities=22% Similarity=0.271 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHHH-HHHHHcCCCEEEEecCC---------------CchhhHHHHHHHHHHHcCCcC
Q 030804 121 TIEVSKKVGEMIA-KSCLEKGITKVAFDRGG---------------YPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 121 n~~AA~~VG~~LA-kra~e~GI~~VvfDRgg---------------~~YhGrVkAlad~aRe~GL~f 171 (171)
|.+......+.++ .-.++.|++-|+.|=|= .++-+=+++|++-+++.||+|
T Consensus 27 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~~d~~G~~~~~~~kFP~Gl~~l~~~i~~~Glk~ 93 (417)
T 1szn_A 27 DESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIAPNATRFPDGIDGLAKKVHALGLKL 93 (417)
T ss_dssp CHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCCBTTBCCBCTTTCTTHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHHcCchhhCCCEEEECCCccCCCCCCCCCEEECcccCCcCHHHHHHHHHHcCCEE
Confidence 4455555544442 23478999999998431 234446999999999999986
No 265
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=20.77 E-value=92 Score=24.88 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHH
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQAL 160 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAl 160 (171)
--||..|++++.+.|.+-+.+||........+..+
T Consensus 37 G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~ 71 (352)
T 1sb8_A 37 GFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEV 71 (352)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHH
Confidence 46899999999999987778899754333344433
No 266
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=20.76 E-value=99 Score=27.07 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCch-hhHHHHHHHHHHHcCCcC
Q 030804 129 GEMIAKSCLEKGITKVAFDRGGYPY-HGRIQALADAAREYGLQF 171 (171)
Q Consensus 129 G~~LAkra~e~GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~f 171 (171)
.++|.+-+.+.||+.|++|+....+ --+++++++.+ ||+|
T Consensus 116 ~~~l~~l~~~~~~~~V~~~~~~~~~~~~~~~~v~~~l---gi~~ 156 (482)
T 2xry_A 116 GEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI---SIPF 156 (482)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---CSCE
T ss_pred HHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHc---CCEE
Confidence 4667778888999999999975444 34677777655 7653
No 267
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=20.74 E-value=2e+02 Score=24.92 Aligned_cols=50 Identities=26% Similarity=0.311 Sum_probs=38.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCEEE--EecCCCchhhH--HHHHHHHHHHcCCcC
Q 030804 119 GPTIEVSKKVGEMIAKSCLEKGITKVA--FDRGGYPYHGR--IQALADAAREYGLQF 171 (171)
Q Consensus 119 ~~n~~AA~~VG~~LAkra~e~GI~~Vv--fDRgg~~YhGr--VkAlad~aRe~GL~f 171 (171)
.-|-+.++.+|..++.-.++.|-..|+ +|- +++|. ..++++++..+|+++
T Consensus 26 ~~t~~~~~~i~~a~~~~l~~~~~~~VvVG~D~---R~ss~~l~~a~~~gl~a~G~~V 79 (463)
T 1p5d_X 26 TLTAETAYWIGRAIGSESLARGEPCVAVGRDG---RLSGPELVKQLIQGLVDCGCQV 79 (463)
T ss_dssp TBCHHHHHHHHHHHHHHHHHTTCCEEEEEECS---CTTHHHHHHHHHHHHHTBTCEE
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCeEEEEECC---CCCHHHHHHHHHHHHHHCCCEE
Confidence 458899999999999999887656665 564 35555 467899999999863
No 268
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=20.64 E-value=45 Score=25.89 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=21.2
Q ss_pred HHHHHHcCCCEEEEe-cCCCchhhHHHHHHHHHHHcCCcC
Q 030804 133 AKSCLEKGITKVAFD-RGGYPYHGRIQALADAAREYGLQF 171 (171)
Q Consensus 133 Akra~e~GI~~VvfD-Rgg~~YhGrVkAlad~aRe~GL~f 171 (171)
++...++||++|+|- .... ..|. ..+-++++||++
T Consensus 136 a~aIi~aGI~rVvy~~~~~~-~~~~---~~~~l~~aGI~v 171 (193)
T 1vq2_A 136 AKAIAQSGIKKLVYCETYDK-NKPG---WDDILRNAGIEV 171 (193)
T ss_dssp HHHHHHHTCCEEEEEECCTT-CCTT---TTHHHHHTTCEE
T ss_pred HHHHHHhCCCEEEEecCCCC-cchH---HHHHHHHCCCEE
Confidence 555667899999994 2211 1121 145678888863
No 269
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=20.57 E-value=79 Score=27.72 Aligned_cols=32 Identities=16% Similarity=0.382 Sum_probs=24.3
Q ss_pred CCCEEEEecCCCch-hhHHHHHHHHHHHcCCcC
Q 030804 140 GITKVAFDRGGYPY-HGRIQALADAAREYGLQF 171 (171)
Q Consensus 140 GI~~VvfDRgg~~Y-hGrVkAlad~aRe~GL~f 171 (171)
||+.|++|+.-..| .-+-+++.+.+.+.||+|
T Consensus 89 ~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 121 (440)
T 2e0i_A 89 KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEF 121 (440)
T ss_dssp TCSEEEEECCCSHHHHHHHHHHHHHHHTTTCEE
T ss_pred CCCEEEEecccChHHHHHHHHHHHHHHHcCceE
Confidence 89999998875555 466777888888888764
No 270
>2zko_A NS1, NS1A, non-structural protein 1; dsRNA, protein-RNA interaction; 1.70A {Influenza a virus} PDB: 2z0a_A 1ns1_A 1ail_A 3m8a_A
Probab=20.54 E-value=75 Score=21.68 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=17.3
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q 030804 119 GPTIEVSKKVGEMIAKSCLE 138 (171)
Q Consensus 119 ~~n~~AA~~VG~~LAkra~e 138 (171)
+-|++.|-..|+.|.++.++
T Consensus 54 gldie~at~~GkqIveril~ 73 (73)
T 2zko_A 54 GLDIETATRAGKQIVERILK 73 (73)
T ss_dssp TCCHHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHhC
Confidence 45899999999999999764
No 271
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=20.47 E-value=1.3e+02 Score=24.59 Aligned_cols=40 Identities=20% Similarity=0.123 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCCEE--EEecCCCch-hhHHHHHHHHHHHcCCc
Q 030804 128 VGEMIAKSCLEKGITKV--AFDRGGYPY-HGRIQALADAAREYGLQ 170 (171)
Q Consensus 128 VG~~LAkra~e~GI~~V--vfDRgg~~Y-hGrVkAlad~aRe~GL~ 170 (171)
.+..|++-++..|.++| +||. .| .+.++.|.+.+.+.|++
T Consensus 117 ~~~a~~~~~~~~gw~~vaii~d~---~~g~~~~~~~~~~~~~~g~~ 159 (389)
T 3o21_A 117 LKGAILSLLSYYKWEKFVYLYDT---ERGFSVLQAIMEAAVQNNWQ 159 (389)
T ss_dssp SHHHHHHHHHHHTCCEEEEEECS---TTCSHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHhCCCCEEEEEEcC---cHHHHHHHHHHHHhhcCCCe
Confidence 56777777778899988 3453 34 57789999999999975
No 272
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=20.43 E-value=1.6e+02 Score=23.76 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHHHc
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREY 167 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aRe~ 167 (171)
-+|..|++++.+.|.+-+..||+. .+...+++.+.+.
T Consensus 19 gIG~~la~~l~~~G~~Vv~~~r~~----~~~~~~~~~l~~~ 55 (319)
T 3ioy_A 19 GVGIGLVRQLLNQGCKVAIADIRQ----DSIDKALATLEAE 55 (319)
T ss_dssp THHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHHHhc
Confidence 489999999999999877889873 3444555555443
No 273
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=20.30 E-value=85 Score=26.25 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCC
Q 030804 127 KVGEMIAKSCLEKGITKVAFDRGGY 151 (171)
Q Consensus 127 ~VG~~LAkra~e~GI~~VvfDRgg~ 151 (171)
.+|..+|++++..|.+-++|||...
T Consensus 155 ~IG~~~A~~l~~~G~~V~~~d~~~~ 179 (333)
T 1dxy_A 155 HIGQVAIKLFKGFGAKVIAYDPYPM 179 (333)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHCCCEEEEECCCcc
Confidence 6899999999999999889998653
No 274
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=20.28 E-value=1.3e+02 Score=23.52 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGG 150 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg 150 (171)
+.-+|..|++++.+.|.+-+..||+.
T Consensus 35 sggiG~~la~~L~~~G~~V~~~~r~~ 60 (302)
T 1w6u_A 35 GTGLGKGMTTLLSSLGAQCVIASRKM 60 (302)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34689999999999998877889863
No 275
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=20.22 E-value=1.5e+02 Score=22.88 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCCEEEEecCCCc--hhhHHHHHHHHHHHcCCcC
Q 030804 131 MIAKSCLEKGITKVAFDRGGYP--YHGRIQALADAAREYGLQF 171 (171)
Q Consensus 131 ~LAkra~e~GI~~VvfDRgg~~--YhGrVkAlad~aRe~GL~f 171 (171)
.+.+.+.+.|++.|-+....+. ....++.+.+.++++||++
T Consensus 21 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~i 63 (294)
T 3vni_A 21 YYIEKVAKLGFDILEIAASPLPFYSDIQINELKACAHGNGITL 63 (294)
T ss_dssp HHHHHHHHHTCSEEEEESTTGGGCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCCEEEecCcccCCcCHHHHHHHHHHHHHcCCeE
Confidence 4567788899999976644322 2567899999999999863
No 276
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=20.18 E-value=1.2e+02 Score=24.55 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCC-CEEEEecC
Q 030804 127 KVGEMIAKSCLEKGI-TKVAFDRG 149 (171)
Q Consensus 127 ~VG~~LAkra~e~GI-~~VvfDRg 149 (171)
.+|..||+.+.+.|. +-.+|||.
T Consensus 34 ~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 34 EAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp HHHHHHHHHHHHHSCCEEEEECSS
T ss_pred HHHHHHHHHHHHCCCCeEEEEcCC
Confidence 689999999999998 55589996
No 277
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}
Probab=20.08 E-value=1.8e+02 Score=22.32 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecC
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRG 149 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRg 149 (171)
+.-+|..+++++.+.|.+-+..||+
T Consensus 16 s~gIG~~ia~~l~~~G~~V~~~~r~ 40 (260)
T 2z1n_A 16 SSGLGFASALELARNGARLLLFSRN 40 (260)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3468999999999999876678986
No 278
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=20.06 E-value=1.2e+02 Score=23.73 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCC
Q 030804 126 KKVGEMIAKSCLEKGITKVAFDRGGY 151 (171)
Q Consensus 126 ~~VG~~LAkra~e~GI~~VvfDRgg~ 151 (171)
.-+|+.+|+++.+.|.+-+..||+..
T Consensus 16 ~GIG~aia~~la~~G~~V~~~~r~~~ 41 (274)
T 3e03_A 16 RGIGLAIALRAARDGANVAIAAKSAV 41 (274)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCCS
T ss_pred ChHHHHHHHHHHHCCCEEEEEeccch
Confidence 46899999999999997778899754
No 279
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=20.06 E-value=1.8e+02 Score=22.70 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCchhhHHHHHHHHHH
Q 030804 125 SKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAR 165 (171)
Q Consensus 125 A~~VG~~LAkra~e~GI~~VvfDRgg~~YhGrVkAlad~aR 165 (171)
+.-+|..|++++.+.|.+-+..||+. .+...+++.++
T Consensus 27 sggIG~~la~~l~~~G~~V~~~~r~~----~~~~~~~~~l~ 63 (303)
T 1yxm_A 27 ATGIGKAIVKELLELGSNVVIASRKL----ERLKSAADELQ 63 (303)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHH
Confidence 34689999999999998877889863 23444444443
Done!