BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030806
         (171 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P03178|GK_HHV1K Glycoprotein K OS=Human herpesvirus 1 (strain KOS) GN=gK PE=3 SV=1
          Length = 338

 Score = 30.4 bits (67), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 35/79 (44%)

Query: 52  STVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACL 111
           STV  ++A+GL+L+   V        C      TGT++ T  V+  +   + FLGA    
Sbjct: 11  STVVLITAYGLVLVWYTVFGASPLHRCIYAVRPTGTNNDTALVWMKMNQTLLFLGAPTHP 70

Query: 112 LAGSARNAYHTKYRKIFGG 130
             G  RN  H  Y  +  G
Sbjct: 71  PNGGWRNHAHISYANLIAG 89


>sp|Q07005|GK_HHV19 Glycoprotein K OS=Human herpesvirus 1 (strain R19) GN=gK PE=3 SV=1
          Length = 338

 Score = 30.4 bits (67), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 35/79 (44%)

Query: 52  STVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACL 111
           STV  ++A+GL+L+   V        C      TGT++ T  V+  +   + FLGA    
Sbjct: 11  STVVLITAYGLVLVWYTVFGASPLHRCIYAVRPTGTNNDTALVWMKMNQTLLFLGAPTHP 70

Query: 112 LAGSARNAYHTKYRKIFGG 130
             G  RN  H  Y  +  G
Sbjct: 71  PNGGWRNHAHISYANLIAG 89


>sp|Q2UTP0|SMP3_ASPOR GPI mannosyltransferase 4 OS=Aspergillus oryzae (strain ATCC 42149
           / RIB 40) GN=smp3 PE=3 SV=1
          Length = 543

 Score = 30.4 bits (67), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 25  AERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVN 71
           A  RR+T  +V   Y   TY  ++   S    L A+GL+LI + VVN
Sbjct: 118 ARHRRATVVLVASSYVTWTYQTHTFSNSLETLLVAWGLVLIRRIVVN 164


>sp|Q6L741|KANB_STRKN 2'-deamino-2'-hydroxyneamine transaminase OS=Streptomyces
           kanamyceticus GN=kanB PE=1 SV=1
          Length = 392

 Score = 30.0 bits (66), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 10/91 (10%)

Query: 46  VYSTDASTVYGLS-AFGLLLISQA---VVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSW 101
           VY  D +    L+ +FG +LI  A   VV  VT  L  G    TG S    A+   ++ W
Sbjct: 46  VYDLDGNAYLDLTGSFGSVLIGHAEPAVVRAVTDVLSEGNLFYTGASPRRLALAERLLDW 105

Query: 102 VS------FLGAEACLLAGSARNAYHTKYRK 126
                   F    +C ++ +AR A H   R 
Sbjct: 106 FPWSEQAIFYRTGSCAVSAAARLAQHATGRN 136


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.134    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,975,447
Number of Sequences: 539616
Number of extensions: 2249627
Number of successful extensions: 5685
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5671
Number of HSP's gapped (non-prelim): 17
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)