Query 030806
Match_columns 171
No_of_seqs 109 out of 216
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 04:51:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06749 DUF1218: Protein of u 99.8 1.9E-21 4.2E-26 143.4 6.9 71 58-128 1-72 (97)
2 PF05478 Prominin: Prominin; 91.3 0.76 1.6E-05 45.1 7.6 74 44-119 406-492 (806)
3 cd07912 Tweety_N N-terminal do 89.1 2.1 4.6E-05 39.3 8.1 64 52-116 38-105 (418)
4 PF07344 Amastin: Amastin surf 88.9 2.7 5.9E-05 33.0 7.6 89 5-111 66-155 (155)
5 PF09788 Tmemb_55A: Transmembr 79.0 2 4.3E-05 37.1 3.1 47 73-120 177-224 (256)
6 PF04906 Tweety: Tweety; Inte 78.3 5.2 0.00011 36.4 5.7 29 55-83 22-50 (406)
7 KOG4433 Tweety transmembrane/c 73.7 3.6 7.9E-05 38.7 3.4 55 51-105 41-99 (526)
8 PF05478 Prominin: Prominin; 72.9 16 0.00034 36.0 7.8 23 91-113 141-163 (806)
9 KOG4684 Uncharacterized conser 59.7 12 0.00026 32.1 3.6 53 68-120 184-237 (275)
10 KOG4026 Uncharacterized conser 59.5 1.1E+02 0.0023 25.9 9.3 24 5-28 7-30 (207)
11 PF05360 YiaAB: yiaA/B two hel 56.6 11 0.00024 24.7 2.4 32 97-129 2-34 (53)
12 PF11169 DUF2956: Protein of u 55.6 12 0.00026 28.2 2.6 19 91-109 84-102 (103)
13 PF07062 Clc-like: Clc-like; 40.9 96 0.0021 26.0 6.1 56 56-117 104-162 (211)
14 COG4682 Predicted membrane pro 38.7 50 0.0011 25.8 3.8 41 90-131 6-47 (128)
15 PRK11383 hypothetical protein; 35.2 49 0.0011 26.4 3.3 37 95-131 11-47 (145)
16 PF12273 RCR: Chitin synthesis 35.1 30 0.00064 26.2 2.0 13 111-123 16-28 (130)
17 PF13903 Claudin_2: PMP-22/EMP 33.4 2E+02 0.0044 21.4 7.8 27 92-118 103-129 (172)
18 PF10267 Tmemb_cc2: Predicted 30.1 1.1E+02 0.0023 28.2 5.1 46 53-99 338-383 (395)
19 PF14798 Ca_hom_mod: Calcium h 29.7 1.1E+02 0.0025 26.2 5.0 61 49-121 14-74 (251)
20 COG4858 Uncharacterized membra 27.2 3.9E+02 0.0084 22.6 8.2 59 52-111 122-185 (226)
21 PF10003 DUF2244: Integral mem 25.4 1.4E+02 0.0031 22.9 4.4 16 108-123 45-61 (140)
22 PF14494 DUF4436: Domain of un 25.1 2.7E+02 0.0058 24.0 6.4 83 4-116 170-252 (256)
23 PF07344 Amastin: Amastin surf 24.8 3.3E+02 0.0072 21.1 7.1 60 44-112 54-116 (155)
24 PTZ00201 amastin surface glyco 24.4 4.1E+02 0.0088 22.0 9.0 25 92-116 151-175 (192)
25 PF10724 DUF2516: Protein of u 23.8 2.3E+02 0.0051 21.0 5.1 17 6-22 14-30 (100)
26 PF13828 DUF4190: Domain of un 23.3 2.4E+02 0.0053 19.0 5.1 22 87-108 39-60 (62)
27 KOG4112 Signal peptidase subun 23.1 98 0.0021 23.2 2.9 22 9-30 30-51 (101)
28 PF01307 Plant_vir_prot: Plant 21.3 3.5E+02 0.0076 20.1 6.0 9 27-35 27-35 (104)
29 PF13903 Claudin_2: PMP-22/EMP 21.0 3.5E+02 0.0076 20.0 6.2 24 47-70 147-170 (172)
30 PF13623 SurA_N_2: SurA N-term 21.0 90 0.002 24.4 2.5 18 7-24 10-27 (145)
31 PF06692 MNSV_P7B: Melon necro 20.7 1.5E+02 0.0032 20.2 3.1 10 78-87 3-12 (61)
32 PF07172 GRP: Glycine rich pro 20.7 1.8E+02 0.0039 21.3 3.9 9 1-10 1-9 (95)
33 PF15048 OSTbeta: Organic solu 20.2 1.5E+02 0.0033 23.1 3.5 33 91-123 34-66 (125)
No 1
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=99.85 E-value=1.9e-21 Score=143.41 Aligned_cols=71 Identities=44% Similarity=0.668 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHhcceeccCCCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceee
Q 030806 58 SAFGLLLISQAVVNGVTRCLCFGKGLVT-GTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIF 128 (171)
Q Consensus 58 ~A~v~Ll~aqvi~~~a~~C~Cc~~~~~~-s~~~r~~av~~~v~SWi~f~IA~~lLl~Ga~~N~~~~~~~g~f 128 (171)
+|++||+++|+++|+++||+||+++.+| ++.+|+++++||++||++|+||+++|++|+++|++|+++++++
T Consensus 1 ~A~~~L~~aqvi~~~~~gC~cc~~~~~~~~~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~ 72 (97)
T PF06749_consen 1 AAAVFLLAAQVIANVAGGCLCCGKRVSPKSSRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWF 72 (97)
T ss_pred CHHHHHHHHHHHHHHHhcceEeCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 4899999999999999999999988777 6689999999999999999999999999999999998876554
No 2
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=91.30 E-value=0.76 Score=45.08 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=45.7
Q ss_pred eeecCCChhh-HhHHHHHHHHHHHHHHHHHHhcceecc-C-CCCCCC-------cchH---HHHHHHHHHHHHHHHHHHH
Q 030806 44 YCVYSTDAST-VYGLSAFGLLLISQAVVNGVTRCLCFG-K-GLVTGT-------SSTT---WAVFFFIVSWVSFLGAEAC 110 (171)
Q Consensus 44 ~C~Yps~~A~-~lGi~A~v~Ll~aqvi~~~a~~C~Cc~-~-~~~~s~-------~~r~---~av~~~v~SWi~f~IA~~l 110 (171)
+-+|.++.-. +++++..++|++ ++.....-|.||| + +..|++ +.+. -..+.|++||+..+++.+.
T Consensus 406 ~~~y~~yR~~~~lil~~~llLIv--~~~~lGLl~G~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~ 483 (806)
T PF05478_consen 406 YEKYDSYRWIVGLILCCVLLLIV--LCLLLGLLCGCCGYRRRADPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLFY 483 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555443 445555555554 3344555678898 3 223322 2332 2356789999999999999
Q ss_pred HHHHhhhcc
Q 030806 111 LLAGSARNA 119 (171)
Q Consensus 111 Ll~Ga~~N~ 119 (171)
|+.|.....
T Consensus 484 Fl~G~~~~~ 492 (806)
T PF05478_consen 484 FLVGGNTYT 492 (806)
T ss_pred HHHHhhhhe
Confidence 999998744
No 3
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=89.12 E-value=2.1 Score=39.33 Aligned_cols=64 Identities=14% Similarity=0.033 Sum_probs=30.0
Q ss_pred hhHh-HHHHHHHHHHHHHHHHHHhcceeccCCC---CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030806 52 STVY-GLSAFGLLLISQAVVNGVTRCLCFGKGL---VTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSA 116 (171)
Q Consensus 52 A~~l-Gi~A~v~Ll~aqvi~~~a~~C~Cc~~~~---~~s~~~r~~av~~~v~SWi~f~IA~~lLl~Ga~ 116 (171)
|+++ |..|++.+++.=+...+...|.||.++. .+....+...+.+.+++-+++ +|.+....|-.
T Consensus 38 Sv~~~a~iaavwlil~ll~ll~~~~~~CCcr~~~~~~k~~s~~c~~~sLiiltL~~~-aaIi~~f~GN~ 105 (418)
T cd07912 38 SLLILASIPAACLILSLLFLLVYLITRCCDRKPTEERPRHSICCLKWSLVIATLLCC-AAIGVGLYGND 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccHHHHHHHHHHHHHH-HHHHHHhhccH
Confidence 5554 5566666656656666556666554332 222122233333333333333 35555555443
No 4
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=88.87 E-value=2.7 Score=33.03 Aligned_cols=89 Identities=16% Similarity=0.039 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcccceeeccCCCCcceeecCCChhhHhHHHHHHHHHHHHHHHHHHhcceeccCCCC
Q 030806 5 VSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLV 84 (171)
Q Consensus 5 ~~v~~vv~~lgliAfiLgi~AE~~r~~a~~v~~~~~~~~~C~Yps~~A~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~~~~~ 84 (171)
-...++..+++..|+++|+..=... ...+-+...|.+.+++++++.=++....=.=.-|+ ..+
T Consensus 66 ~afaIisi~~~~~a~v~g~~~l~~~----------------~~~r~v~l~L~~~~~~~~~v~wa~~v~~Y~~~~C~-~~~ 128 (155)
T PF07344_consen 66 QAFAIISIFVYGAAFVLGVLLLCCC----------------SCLRWVCLVLNIVGIVTLLVVWALMVVVYYGGFCG-ALK 128 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc-Ccc
Confidence 3456777888999999998864432 22234567788888888777665443332223444 222
Q ss_pred CCCcch-HHHHHHHHHHHHHHHHHHHHH
Q 030806 85 TGTSST-TWAVFFFIVSWVSFLGAEACL 111 (171)
Q Consensus 85 ~s~~~r-~~av~~~v~SWi~f~IA~~lL 111 (171)
+. ..+ ..+-.+++.+|+..+|+.+.|
T Consensus 129 ~~-~~~yg~GF~L~v~aw~l~~i~ii~L 155 (155)
T PF07344_consen 129 SR-GYKYGAGFALFVAAWCLDIINIIFL 155 (155)
T ss_pred CC-CcccCccHHHHHHHHHHHHHHHHhC
Confidence 22 223 367889999999999988764
No 5
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=78.98 E-value=2 Score=37.13 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=33.7
Q ss_pred HhcceeccCCCCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 030806 73 VTRCLCFGKGLVTG-TSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120 (171)
Q Consensus 73 a~~C~Cc~~~~~~s-~~~r~~av~~~v~SWi~f~IA~~lLl~Ga~~N~~ 120 (171)
..+|+-|+|...-+ +-.|..+++||+++-+++++|..+. +||-..+.
T Consensus 177 lARCPHCrKvSSVG~~faRkR~i~f~llgllfliiaiglt-vGT~~~A~ 224 (256)
T PF09788_consen 177 LARCPHCRKVSSVGPRFARKRAIIFFLLGLLFLIIAIGLT-VGTWTYAK 224 (256)
T ss_pred cccCCCCceeccccchHhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHh
Confidence 37999888643333 3688899999999998888776654 66655444
No 6
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=78.28 E-value=5.2 Score=36.38 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcceeccCCC
Q 030806 55 YGLSAFGLLLISQAVVNGVTRCLCFGKGL 83 (171)
Q Consensus 55 lGi~A~v~Ll~aqvi~~~a~~C~Cc~~~~ 83 (171)
+|..+++.|.+.-+...+-.-|.||+|+.
T Consensus 22 la~v~~~~l~l~Ll~ll~yl~~~CC~r~~ 50 (406)
T PF04906_consen 22 LASVAAACLALSLLFLLIYLICRCCCRRP 50 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 35566667777766666666677776543
No 7
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=73.73 E-value=3.6 Score=38.67 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=33.1
Q ss_pred hhhH-hHHHHHHHHHHHHHHHHHHhcceeccCCCCCC---CcchHHHHHHHHHHHHHHH
Q 030806 51 ASTV-YGLSAFGLLLISQAVVNGVTRCLCFGKGLVTG---TSSTTWAVFFFIVSWVSFL 105 (171)
Q Consensus 51 ~A~~-lGi~A~v~Ll~aqvi~~~a~~C~Cc~~~~~~s---~~~r~~av~~~v~SWi~f~ 105 (171)
+|.. +|..++.+|.+.-+..-+..-|.||.|+..++ ...|-....++|++-+++.
T Consensus 41 QaL~lla~l~aa~l~l~Ll~ll~yli~~cC~Rr~~~~~~~~~~~c~s~~l~I~tl~cca 99 (526)
T KOG4433|consen 41 QALLLLAALAAACLGLSLLFLLFYLICRCCCRRETTGRKRRRVRCLSWSLIIATLMCCA 99 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCcceeeehHHHHHHHHHH
Confidence 4554 37777778888887777777787776544222 1233344555566655554
No 8
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=72.87 E-value=16 Score=36.02 Aligned_cols=23 Identities=9% Similarity=0.440 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030806 91 TWAVFFFIVSWVSFLGAEACLLA 113 (171)
Q Consensus 91 ~~av~~~v~SWi~f~IA~~lLl~ 113 (171)
.+++.+++++.+..+-.+.+|++
T Consensus 141 ~l~~~L~~~~~~il~g~i~aF~~ 163 (806)
T PF05478_consen 141 CLGILLLLLTLIILFGVICAFVA 163 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777776666655544444444
No 9
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=59.67 E-value=12 Score=32.07 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=36.6
Q ss_pred HHHHHHhcceeccCCCCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 030806 68 AVVNGVTRCLCFGKGLVTG-TSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120 (171)
Q Consensus 68 vi~~~a~~C~Cc~~~~~~s-~~~r~~av~~~v~SWi~f~IA~~lLl~Ga~~N~~ 120 (171)
-+-|+..+|+-|++-..-+ .-.|.-++.|||+..++.+.|.++-+.-.+....
T Consensus 184 t~tnaLArCPHCrKvSsvGsrfar~Ra~~ffilal~~avta~~lt~gT~s~a~~ 237 (275)
T KOG4684|consen 184 TLTNALARCPHCRKVSSVGSRFARRRALLFFILALTVAVTAVILTMGTASVAPV 237 (275)
T ss_pred hHHHHHhcCCcccchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 3456778999998744333 2466788999999988888888776655443333
No 10
>KOG4026 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.50 E-value=1.1e+02 Score=25.86 Aligned_cols=24 Identities=8% Similarity=-0.092 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhh
Q 030806 5 VSIVAVVTALHLIAFVFAVGAERR 28 (171)
Q Consensus 5 ~~v~~vv~~lgliAfiLgi~AE~~ 28 (171)
..+-++=.++.+...+|...|-+.
T Consensus 7 ~~~gviW~l~t~c~a~l~~v~fi~ 30 (207)
T KOG4026|consen 7 RAVGVIWALCTICFAVLFMVAFIQ 30 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445577888888888877543
No 11
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=56.60 E-value=11 Score=24.68 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccc-ccceeec
Q 030806 97 FIVSWVSFLGAEACLLAGSARNAYHT-KYRKIFG 129 (171)
Q Consensus 97 ~v~SWi~f~IA~~lLl~Ga~~N~~~~-~~~g~f~ 129 (171)
...+|+.|+++..++..|-- |.... -.+|++.
T Consensus 2 ~~~~~~~f~i~~~~~~iGl~-~~~~~l~~KGy~~ 34 (53)
T PF05360_consen 2 VGQSWISFGISIVLMLIGLW-NAPLDLSEKGYYA 34 (53)
T ss_pred hhHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHH
Confidence 46899999999999999976 55443 3355543
No 12
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=55.59 E-value=12 Score=28.21 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030806 91 TWAVFFFIVSWVSFLGAEA 109 (171)
Q Consensus 91 ~~av~~~v~SWi~f~IA~~ 109 (171)
.+--+++++||+-|++-+.
T Consensus 84 ~LPW~LL~lSW~gF~~Y~~ 102 (103)
T PF11169_consen 84 WLPWGLLVLSWIGFIAYIF 102 (103)
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 3445699999999986554
No 13
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=40.89 E-value=96 Score=26.02 Aligned_cols=56 Identities=9% Similarity=-0.039 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc---ceeccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030806 56 GLSAFGLLLISQAVVNGVTR---CLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSAR 117 (171)
Q Consensus 56 Gi~A~v~Ll~aqvi~~~a~~---C~Cc~~~~~~s~~~r~~av~~~v~SWi~f~IA~~lLl~Ga~~ 117 (171)
=.+.+++++++++.+..+.. |-+|.+ ..-.+-.++.++++++..+|.+.+..-+-+
T Consensus 104 h~AvLil~~~s~lf~~lsi~~~iCa~c~~------~~ai~~~v~~~ia~l~S~~g~~iF~~~a~~ 162 (211)
T PF07062_consen 104 HKAVLILISFSMLFALLSICFGICAPCHP------SFAIFYTVLVFIAALLSLIGLGIFFFNAHM 162 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888887666654 433422 112455677788888888899888887765
No 14
>COG4682 Predicted membrane protein [Function unknown]
Probab=38.74 E-value=50 Score=25.77 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cccceeecCC
Q 030806 90 TTWAVFFFIVSWVSFLGAEACLLAGSARNAYH-TKYRKIFGGG 131 (171)
Q Consensus 90 r~~av~~~v~SWi~f~IA~~lLl~Ga~~N~~~-~~~~g~f~~~ 131 (171)
+..+..+-++||..|+..+...+.|- +|+.+ ..++|+|-.-
T Consensus 6 ~~~s~af~~va~~~lv~G~vvyLiGL-Wna~~qLnEKGYyfaV 47 (128)
T COG4682 6 EIVSKAFTIVAWLALVVGAVVYLVGL-WNACMQLNEKGYYFAV 47 (128)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhh-cccchhhccCceeehh
Confidence 34566788899999999999999995 56655 3557766543
No 15
>PRK11383 hypothetical protein; Provisional
Probab=35.19 E-value=49 Score=26.42 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccceeecCC
Q 030806 95 FFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGG 131 (171)
Q Consensus 95 ~~~v~SWi~f~IA~~lLl~Ga~~N~~~~~~~g~f~~~ 131 (171)
.|..+||+.++++..+++.|-=.......++|+|...
T Consensus 11 af~~~sw~al~~g~~~y~iGLwnA~~~LsEKGyY~~v 47 (145)
T PRK11383 11 AFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAV 47 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCcccHHHHH
Confidence 4778999999999999999865333344556766543
No 16
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=35.06 E-value=30 Score=26.22 Aligned_cols=13 Identities=15% Similarity=0.087 Sum_probs=6.3
Q ss_pred HHHHhhhcccccc
Q 030806 111 LLAGSARNAYHTK 123 (171)
Q Consensus 111 Ll~Ga~~N~~~~~ 123 (171)
|+.....|+++.+
T Consensus 16 ~~~~~~~~rRR~r 28 (130)
T PF12273_consen 16 LFLFYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHHHHhh
Confidence 3344444666544
No 17
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=33.43 E-value=2e+02 Score=21.35 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 030806 92 WAVFFFIVSWVSFLGAEACLLAGSARN 118 (171)
Q Consensus 92 ~av~~~v~SWi~f~IA~~lLl~Ga~~N 118 (171)
.+.+++++|.++.+++.+.+..--..|
T Consensus 103 ~~~~~~~~ag~~~l~~l~~~~~~~~~~ 129 (172)
T PF13903_consen 103 FAGILFILAGLCILIALIVFVVSVNYE 129 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366688888988888877776655544
No 18
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.11 E-value=1.1e+02 Score=28.19 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=28.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhcceeccCCCCCCCcchHHHHHHHHH
Q 030806 53 TVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIV 99 (171)
Q Consensus 53 ~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~~~~~~s~~~r~~av~~~v~ 99 (171)
..|+-.-=++|.+.+++..+++.+..|..|+..+ +.|++.++++++
T Consensus 338 ~~l~k~inllL~l~~vlLv~vSt~~~~~~Pl~~t-R~r~~~t~~~v~ 383 (395)
T PF10267_consen 338 ALLGKLINLLLTLLTVLLVFVSTVANCPLPLTRT-RLRTLTTLLLVG 383 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHhhc-cHHHHHHHHHHH
Confidence 4455555566667777777777666666666555 667666655443
No 19
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=29.70 E-value=1.1e+02 Score=26.15 Aligned_cols=61 Identities=20% Similarity=0.113 Sum_probs=45.2
Q ss_pred CChhhHhHHHHHHHHHHHHHHHHHHhcceeccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 030806 49 TDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYH 121 (171)
Q Consensus 49 s~~A~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~~~~~~s~~~r~~av~~~v~SWi~f~IA~~lLl~Ga~~N~~~ 121 (171)
++.+++.|+.+++-+.--|+.-++.-.|||--+ .|-.-+.+| .++-|.++|+.|-..|++-
T Consensus 14 ~~~~~~ngi~~llt~g~e~lfs~~~F~CPC~~~------~N~~YGl~f------LlvPAl~LfllG~~ln~~~ 74 (251)
T PF14798_consen 14 HSESLGNGICALLTAGGEQLFSSFVFSCPCSPG------WNFLYGLVF------LLVPALVLFLLGYLLNRRT 74 (251)
T ss_pred cchhHHHHHHHHHHHHHHhhhheeeeecCCCCc------ccchhHhHH------HHHHHHHHHHHHHHHhccc
Confidence 567889999999999999999999999998532 232222322 4557888888888888764
No 20
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=27.20 E-value=3.9e+02 Score=22.64 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=34.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhcceecc----CCCCCCCcchH-HHHHHHHHHHHHHHHHHHHH
Q 030806 52 STVYGLSAFGLLLISQAVVNGVTRCLCFG----KGLVTGTSSTT-WAVFFFIVSWVSFLGAEACL 111 (171)
Q Consensus 52 A~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~----~~~~~s~~~r~-~av~~~v~SWi~f~IA~~lL 111 (171)
|+.+|+...++..+.--.+|......--+ +...|+ ..+. .+.+..++-|+...||-+.|
T Consensus 122 A~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~-~~K~~lv~~~sm~lWi~v~i~t~~l 185 (226)
T COG4858 122 AQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPG-TWKYLLVAVLSMLLWIAVMIATVFL 185 (226)
T ss_pred CcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCc-hHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 55677777666655555555555442112 122333 3343 66788899999888776543
No 21
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=25.37 E-value=1.4e+02 Score=22.85 Aligned_cols=16 Identities=31% Similarity=0.210 Sum_probs=8.0
Q ss_pred HHHHHHHhhh-cccccc
Q 030806 108 EACLLAGSAR-NAYHTK 123 (171)
Q Consensus 108 ~~lLl~Ga~~-N~~~~~ 123 (171)
++.+++.+.. |.+|.+
T Consensus 45 ev~~l~~a~~~~~r~~~ 61 (140)
T PF10003_consen 45 EVLALWYAFRRNYRHAR 61 (140)
T ss_pred HHHHHHHHHHHHHhhCc
Confidence 4445554444 555544
No 22
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=25.05 E-value=2.7e+02 Score=24.01 Aligned_cols=83 Identities=23% Similarity=0.242 Sum_probs=47.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhcccceeeccCCCCcceeecCCChhhHhHHHHHHHHHHHHHHHHHHhcceeccCCC
Q 030806 4 SVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGL 83 (171)
Q Consensus 4 s~~v~~vv~~lgliAfiLgi~AE~~r~~a~~v~~~~~~~~~C~Yps~~A~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~~~~ 83 (171)
+++++++...|-++++..++..=.+|.+ ... | .++..|+++..+-++ |..
T Consensus 170 ~~~i~~vm~~L~~~al~~ai~~~~~rr~--~~~--------------~--~l~w~aA~LFAlp~l------------RN~ 219 (256)
T PF14494_consen 170 ALFICLVMWALATLALFVAIQVLRRRRK--FEP--------------P--MLTWMAAMLFALPPL------------RNI 219 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccc--ccc--------------c--hHHHHHHHHHhhhhH------------hcc
Confidence 4566666677777777766655443432 111 1 377888877777766 333
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030806 84 VTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSA 116 (171)
Q Consensus 84 ~~s~~~r~~av~~~v~SWi~f~IA~~lLl~Ga~ 116 (171)
-|++..--..+=++++-|..-+++.+|.+.-..
T Consensus 220 lPGaPP~G~~iD~~~vlW~~i~l~~~m~~~v~~ 252 (256)
T PF14494_consen 220 LPGAPPIGSWIDFAGVLWVLIALVASMVLYVVA 252 (256)
T ss_pred CCCCCCCcceEeeeehHHHHHHHHHHHHHHHHH
Confidence 343222112333455668888888777776443
No 23
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=24.81 E-value=3.3e+02 Score=21.10 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=39.2
Q ss_pred eeecCCC---hhhHhHHHHHHHHHHHHHHHHHHhcceeccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 030806 44 YCVYSTD---ASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLL 112 (171)
Q Consensus 44 ~C~Yps~---~A~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~~~~~~s~~~r~~av~~~v~SWi~f~IA~~lLl 112 (171)
.|...++ .+-++.+.+.++.+++-+++-....| |+ ..|....++.++++++..+..++..
T Consensus 54 ~C~~~~~~f~aa~afaIisi~~~~~a~v~g~~~l~~--~~-------~~r~v~l~L~~~~~~~~~v~wa~~v 116 (155)
T PF07344_consen 54 NCPQRRSRFRAAQAFAIISIFVYGAAFVLGVLLLCC--CS-------CLRWVCLVLNIVGIVTLLVVWALMV 116 (155)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hh-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6765544 45577888888888888877665543 31 4677777777777777665444433
No 24
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=24.42 E-value=4.1e+02 Score=21.97 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 030806 92 WAVFFFIVSWVSFLGAEACLLAGSA 116 (171)
Q Consensus 92 ~av~~~v~SWi~f~IA~~lLl~Ga~ 116 (171)
.+-.+++++|+..+|..+.|+..-.
T Consensus 151 aGF~Llv~AW~L~iinii~lllp~~ 175 (192)
T PTZ00201 151 TGFALLVVAWILDILNIIFLLLPCT 175 (192)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhccc
Confidence 5688999999999999999998663
No 25
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=23.83 E-value=2.3e+02 Score=21.00 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHHH
Q 030806 6 SIVAVVTALHLIAFVFA 22 (171)
Q Consensus 6 ~v~~vv~~lgliAfiLg 22 (171)
.+..+++++++.|++.+
T Consensus 14 ~l~~~~~~~~v~Alv~a 30 (100)
T PF10724_consen 14 ALSLVALVLAVWALVDA 30 (100)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445556666666654
No 26
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=23.29 E-value=2.4e+02 Score=18.96 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=17.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHH
Q 030806 87 TSSTTWAVFFFIVSWVSFLGAE 108 (171)
Q Consensus 87 ~~~r~~av~~~v~SWi~f~IA~ 108 (171)
++.|..|+.=.+++|+..+++.
T Consensus 39 ~~G~g~A~aGivlG~i~~~~~v 60 (62)
T PF13828_consen 39 QRGRGMAIAGIVLGYIGIVLAV 60 (62)
T ss_pred CCChHHHHHHHHHHHHHHHHHH
Confidence 4678899999999998887654
No 27
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.11 E-value=98 Score=23.18 Aligned_cols=22 Identities=9% Similarity=0.342 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 030806 9 AVVTALHLIAFVFAVGAERRRS 30 (171)
Q Consensus 9 ~vv~~lgliAfiLgi~AE~~r~ 30 (171)
.+..+.++++|++|+..|+=.-
T Consensus 30 ~ilti~aiVg~i~Gf~~Qqls~ 51 (101)
T KOG4112|consen 30 LILTIGAIVGFIYGFAQQQLSV 51 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999987544
No 28
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=21.34 E-value=3.5e+02 Score=20.11 Aligned_cols=9 Identities=44% Similarity=0.246 Sum_probs=4.3
Q ss_pred hhcccceee
Q 030806 27 RRRSTAKVV 35 (171)
Q Consensus 27 ~~r~~a~~v 35 (171)
.+|++--++
T Consensus 27 ltr~tlPhv 35 (104)
T PF01307_consen 27 LTRSTLPHV 35 (104)
T ss_pred hhcCCCCCC
Confidence 455554343
No 29
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=21.02 E-value=3.5e+02 Score=19.99 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=18.7
Q ss_pred cCCChhhHhHHHHHHHHHHHHHHH
Q 030806 47 YSTDASTVYGLSAFGLLLISQAVV 70 (171)
Q Consensus 47 Yps~~A~~lGi~A~v~Ll~aqvi~ 70 (171)
+.=+-++.++.+|+++++++=++.
T Consensus 147 ~~~gwSf~la~~a~~~~l~a~~l~ 170 (172)
T PF13903_consen 147 YSYGWSFWLAWVAFILLLLAGILF 170 (172)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHH
Confidence 334678999999999999887654
No 30
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=21.00 E-value=90 Score=24.41 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 030806 7 IVAVVTALHLIAFVFAVG 24 (171)
Q Consensus 7 v~~vv~~lgliAfiLgi~ 24 (171)
+.++|+.|+|+|||++=.
T Consensus 10 lLi~vIglAL~aFIv~d~ 27 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDF 27 (145)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566788999999999743
No 31
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=20.72 E-value=1.5e+02 Score=20.18 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=5.6
Q ss_pred eccCCCCCCC
Q 030806 78 CFGKGLVTGT 87 (171)
Q Consensus 78 Cc~~~~~~s~ 87 (171)
|||-...|++
T Consensus 3 c~rc~~~p~d 12 (61)
T PF06692_consen 3 CCRCDSAPGD 12 (61)
T ss_pred ccccCCCCcc
Confidence 5665555553
No 32
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.69 E-value=1.8e+02 Score=21.26 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=4.4
Q ss_pred CcchhhhHHH
Q 030806 1 MAMSVSIVAV 10 (171)
Q Consensus 1 m~~s~~v~~v 10 (171)
|+ |+.++++
T Consensus 1 Ma-SK~~llL 9 (95)
T PF07172_consen 1 MA-SKAFLLL 9 (95)
T ss_pred Cc-hhHHHHH
Confidence 56 6543333
No 33
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=20.16 E-value=1.5e+02 Score=23.09 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 030806 91 TWAVFFFIVSWVSFLGAEACLLAGSARNAYHTK 123 (171)
Q Consensus 91 ~~av~~~v~SWi~f~IA~~lLl~Ga~~N~~~~~ 123 (171)
.|-...+++|-++.+|++++|.-+...|+.+.+
T Consensus 34 pWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~ 66 (125)
T PF15048_consen 34 PWNYSILALSFVVLVISFFLLGRSIQANRNRKM 66 (125)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhHhcccccc
Confidence 355667889999999999999999998888654
Done!