Query 030806
Match_columns 171
No_of_seqs 109 out of 216
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 07:16:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b23_C Variegin; hydrolase-hyd 17.8 38 0.0013 19.5 0.7 11 160-170 12-22 (32)
2 2jp3_A FXYD domain-containing 10.2 1.8E+02 0.0062 19.3 2.4 37 42-80 9-45 (67)
3 2lk9_A Bone marrow stromal ant 9.9 1.6E+02 0.0055 17.1 1.8 23 3-25 9-31 (35)
4 2nr1_A NR1 M2, M2; receptor, s 6.8 2.6E+02 0.0088 15.4 1.7 16 105-120 9-24 (27)
5 1zza_A Stannin, AG8_1; helix, 5.8 5.5E+02 0.019 17.4 3.3 29 49-79 8-37 (90)
6 2zxe_G FXYD10, phospholemman-l 5.6 4.2E+02 0.014 17.9 2.6 37 42-80 11-47 (74)
7 2jo1_A Phospholemman; FXYD1, N 5.6 4.6E+02 0.016 17.6 2.7 19 62-80 26-44 (72)
8 3qrx_B Melittin; calcium-bindi 5.5 2.1E+02 0.0072 15.4 0.8 7 96-102 14-20 (26)
9 1rkl_A Dolichyl-diphosphooligo 5.3 5.5E+02 0.019 14.9 2.9 19 51-69 10-28 (36)
10 1a6s_A GAG polyprotein; core p 5.1 3.3E+02 0.011 18.8 1.8 17 67-83 3-20 (87)
No 1
>3b23_C Variegin; hydrolase-hydrolase inhibitor complex; 2.40A {Amblyomma variegatum}
Probab=17.80 E-value=38 Score=19.48 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=8.7
Q ss_pred ccCCCCCCccc
Q 030806 160 QQQQPGNDFEK 170 (171)
Q Consensus 160 ~~~~~~~~~~~ 170 (171)
+++-+|+|||.
T Consensus 12 ~~~~p~gDFE~ 22 (32)
T 3b23_C 12 HKTAPPFDFEA 22 (32)
T ss_pred cccCCCCChhh
Confidence 56778999985
No 2
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=10.21 E-value=1.8e+02 Score=19.31 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=18.7
Q ss_pred cceeecCCChhhHhHHHHHHHHHHHHHHHHHHhcceecc
Q 030806 42 MTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFG 80 (171)
Q Consensus 42 ~~~C~Yps~~A~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~ 80 (171)
..+.-|.+=.--||=+++ .|.+.-+++....+|-|+.
T Consensus 9 pF~YDY~tLRigGLifA~--vLfi~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 9 PFYYDWESLQLGGLIFGG--LLCIAGIALALSGKCKCRR 45 (67)
T ss_dssp GGGGGGHHHHHHHHHHHH--HHHHHHHHHHHTTHHHHHH
T ss_pred CcccchHHheecchhhHH--HHHHHHHHHHHcCcccccC
Confidence 344444333333333333 3334445556667898886
No 3
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=9.91 E-value=1.6e+02 Score=17.12 Aligned_cols=23 Identities=9% Similarity=0.391 Sum_probs=12.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHH
Q 030806 3 MSVSIVAVVTALHLIAFVFAVGA 25 (171)
Q Consensus 3 ~s~~v~~vv~~lgliAfiLgi~A 25 (171)
.++++..+++.||+.=-+..+-|
T Consensus 9 ~Gvl~LLviV~LgV~LI~f~~kA 31 (35)
T 2lk9_A 9 IGILVLLIIVILGVPLIIFTIKK 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---
T ss_pred ccHHHHHHHHHhcchheEEeeec
Confidence 34566666666776655555444
No 4
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=6.80 E-value=2.6e+02 Score=15.36 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhhccc
Q 030806 105 LGAEACLLAGSARNAY 120 (171)
Q Consensus 105 ~IA~~lLl~Ga~~N~~ 120 (171)
+++...|.||...|+.
T Consensus 9 l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 9 LSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhheecc
Confidence 3566777788877753
No 5
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=5.80 E-value=5.5e+02 Score=17.44 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=15.9
Q ss_pred CChhhHhHHHHH-HHHHHHHHHHHHHhcceec
Q 030806 49 TDASTVYGLSAF-GLLLISQAVVNGVTRCLCF 79 (171)
Q Consensus 49 s~~A~~lGi~A~-v~Ll~aqvi~~~a~~C~Cc 79 (171)
.+|+++ +... +.|++--.++....||.|-
T Consensus 8 hspttg--vvtv~viliavaalg~li~gcwcy 37 (90)
T 1zza_A 8 HSPTTG--VVTVIVILIAIAALGALILGCWCY 37 (90)
T ss_dssp TTTHHH--HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCcc--eEEehhHHHHHHHHHHHHHHHHHH
Confidence 355554 4333 3344444566677788766
No 6
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=5.61 E-value=4.2e+02 Score=17.86 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=14.9
Q ss_pred cceeecCCChhhHhHHHHHHHHHHHHHHHHHHhcceecc
Q 030806 42 MTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFG 80 (171)
Q Consensus 42 ~~~C~Yps~~A~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~ 80 (171)
..+.-|.+=.--||-+++ .|.+.-+++....+|-|..
T Consensus 11 pF~YDY~tLRigGLifA~--vLfi~GI~iilS~kcrCk~ 47 (74)
T 2zxe_G 11 RFTYDYYRLRVVGLIVAA--VLCVIGIIILLAGKCRCKF 47 (74)
T ss_dssp GGCCCHHHHHHHHHHHHH--HHHHHHHHHHTTTC-----
T ss_pred CcccchHHheeccchhHH--HHHHHHHHHHHcCccccCC
Confidence 344444333333333333 3344445566677888775
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=5.59 E-value=4.6e+02 Score=17.56 Aligned_cols=19 Identities=26% Similarity=0.404 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcceecc
Q 030806 62 LLLISQAVVNGVTRCLCFG 80 (171)
Q Consensus 62 ~Ll~aqvi~~~a~~C~Cc~ 80 (171)
+|.+.-+++....+|-|..
T Consensus 26 vLfi~GI~iilS~KckCk~ 44 (72)
T 2jo1_A 26 ILFILGILIVLSRRCRCKF 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccccCC
Confidence 3444455566667888874
No 8
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=5.54 E-value=2.1e+02 Score=15.43 Aligned_cols=7 Identities=29% Similarity=0.918 Sum_probs=4.4
Q ss_pred HHHHHHH
Q 030806 96 FFIVSWV 102 (171)
Q Consensus 96 ~~v~SWi 102 (171)
-.++|||
T Consensus 14 P~liSWi 20 (26)
T 3qrx_B 14 PALISWI 20 (26)
T ss_pred hHHHHHH
Confidence 3467776
No 9
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=5.29 E-value=5.5e+02 Score=14.86 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=14.3
Q ss_pred hhhHhHHHHHHHHHHHHHH
Q 030806 51 ASTVYGLSAFGLLLISQAV 69 (171)
Q Consensus 51 ~A~~lGi~A~v~Ll~aqvi 69 (171)
-|-.||++++++.++=|-+
T Consensus 10 lan~lG~~~~~LIvlYH~v 28 (36)
T 1rkl_A 10 LAITFGIVMMTLIVIYHAV 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3557899888888877764
No 10
>1a6s_A GAG polyprotein; core protein, virus structure, membrane binding, viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.61.1.4
Probab=5.14 E-value=3.3e+02 Score=18.79 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=11.2
Q ss_pred HHHHHHHhcc-eeccCCC
Q 030806 67 QAVVNGVTRC-LCFGKGL 83 (171)
Q Consensus 67 qvi~~~a~~C-~Cc~~~~ 83 (171)
|++-..+..| .+||+..
T Consensus 3 ~vikv~~~ack~~cgk~s 20 (87)
T 1a6s_A 3 AVIKVISSACKTYCGKTS 20 (87)
T ss_dssp HHHHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHcCCCC
Confidence 4455556678 6888755
Done!