Query 030806
Match_columns 171
No_of_seqs 109 out of 216
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 07:17:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030806.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030806hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p7tc1 f.14.1.1 (C:86-119) Po 36.1 21 0.0015 19.1 3.3 21 7-27 6-26 (34)
2 d2pila_ d.24.1.1 (A:) Pilin Gc 12.4 59 0.0043 20.6 2.4 17 7-23 6-22 (158)
3 d2q7ra1 f.56.1.1 (A:1-139) Ara 5.7 58 0.0042 22.3 -0.1 46 5-50 9-57 (139)
4 d1m0ga_ g.46.1.1 (A:) Metallot 5.0 1.3E+02 0.0096 15.2 1.1 10 73-82 14-23 (30)
5 d1vk6a4 g.41.14.1 (A:97-125) N 4.4 71 0.0052 16.5 -0.3 12 75-86 1-12 (29)
6 d2g0ia1 d.64.2.1 (A:1-111) Hyp 3.9 4.9E+02 0.036 16.3 5.0 43 6-49 31-73 (111)
7 d2j8cm1 f.26.1.1 (M:1-303) M ( 3.9 3.7E+02 0.027 20.7 3.7 14 44-57 92-105 (303)
8 d1j2oa2 g.39.1.3 (A:31-63) Rho 3.9 1.3E+02 0.0094 15.8 0.5 9 75-83 2-10 (33)
9 d1p8ba_ g.3.6.4 (A:) Pab1, sub 3.8 1.6E+02 0.012 15.8 1.0 9 41-49 28-36 (37)
10 d1a7ia1 g.39.1.3 (A:8-35) Cyst 3.8 1.2E+02 0.009 15.3 0.4 8 75-82 2-9 (28)
No 1
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=36.10 E-value=21 Score=19.08 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 030806 7 IVAVVTALHLIAFVFAVGAER 27 (171)
Q Consensus 7 v~~vv~~lgliAfiLgi~AE~ 27 (171)
+..+|.+-|+.+|.|-++|-.
T Consensus 6 vavvvmvagits~glv~aa~a 26 (34)
T d2p7tc1 6 VAVVVMVAGITSFGLVTAALA 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccchhhhHHHHHH
Confidence 567788999999999888754
No 2
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=12.38 E-value=59 Score=20.61 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 030806 7 IVAVVTALHLIAFVFAV 23 (171)
Q Consensus 7 v~~vv~~lgliAfiLgi 23 (171)
+.+++.++|++|.+.--
T Consensus 6 LlVViaIIgILaaia~P 22 (158)
T d2pila_ 6 LMIVIAIVGILAAVALP 22 (158)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666777877776643
No 3
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.73 E-value=58 Score=22.35 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHH---HHHHHHHhhhcccceeeccCCCCcceeecCCC
Q 030806 5 VSIVAVVTALHLIA---FVFAVGAERRRSTAKVVPDQYDEMTYCVYSTD 50 (171)
Q Consensus 5 ~~v~~vv~~lgliA---fiLgi~AE~~r~~a~~v~~~~~~~~~C~Yps~ 50 (171)
+++..+|.++.++- +.+-+..+.+|.+.+.-....++..+|.++.+
T Consensus 9 ~vl~~~vt~l~~~~~~~ls~~Vg~aR~k~~v~~p~~~g~~~f~ra~RaH 57 (139)
T d2q7ra1 9 VVLLAIVTLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTAN 57 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCSCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Confidence 33444444444442 34445666666654322111234567776654
No 4
>d1m0ga_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia coriiceps) [TaxId: 8208]}
Probab=4.97 E-value=1.3e+02 Score=15.22 Aligned_cols=10 Identities=40% Similarity=1.026 Sum_probs=6.2
Q ss_pred HhcceeccCC
Q 030806 73 VTRCLCFGKG 82 (171)
Q Consensus 73 a~~C~Cc~~~ 82 (171)
++||.|.|+.
T Consensus 14 asgcvckgkt 23 (30)
T d1m0ga_ 14 ASGCVCKGKT 23 (30)
T ss_dssp HTSCGGGTSS
T ss_pred ccCceecCCc
Confidence 4667776653
No 5
>d1vk6a4 g.41.14.1 (A:97-125) NADH pyrophosphatase intervening domain {Escherichia coli [TaxId: 562]}
Probab=4.44 E-value=71 Score=16.51 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=8.0
Q ss_pred cceeccCCCCCC
Q 030806 75 RCLCFGKGLVTG 86 (171)
Q Consensus 75 ~C~Cc~~~~~~s 86 (171)
.|.+||.+..+|
T Consensus 1 fCGYCGh~Mh~s 12 (29)
T d1vk6a4 1 YCGYCGHEMYPS 12 (29)
T ss_dssp BCTTTCCBEEEC
T ss_pred CccccCCccccc
Confidence 377888766555
No 6
>d2g0ia1 d.64.2.1 (A:1-111) Hypothetical protein Smu.848 {Streptococcus mutans [TaxId: 1309]}
Probab=3.95 E-value=4.9e+02 Score=16.29 Aligned_cols=43 Identities=14% Similarity=0.000 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccceeeccCCCCcceeecCC
Q 030806 6 SIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYST 49 (171)
Q Consensus 6 ~v~~vv~~lgliAfiLgi~AE~~r~~a~~v~~~~~~~~~C~Yps 49 (171)
+||..|.+|-..+ +.++...........+...+++...|.+|.
T Consensus 31 IVCAaVS~l~~~~-vn~l~~~~~~~~~~~~~e~~~G~l~~~l~~ 73 (111)
T d2g0ia1 31 IVCAAVSTLSMNL-VNALEVLADCTVSLQMDEFDGGYMKIDLSY 73 (111)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHSCCCCEEEEECSTTCEEEEECTT
T ss_pred EEEehHHHHHHHH-HHHHHHHhcccceeEeecccCceEEEEEec
Confidence 6888887765544 566655443322223333334677898873
No 7
>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.92 E-value=3.7e+02 Score=20.70 Aligned_cols=14 Identities=0% Similarity=0.055 Sum_probs=10.9
Q ss_pred eeecCCChhhHhHH
Q 030806 44 YCVYSTDASTVYGL 57 (171)
Q Consensus 44 ~C~Yps~~A~~lGi 57 (171)
.-..|.++..+|++
T Consensus 92 lsl~PP~~~yGL~~ 105 (303)
T d2j8cm1 92 FSLEPPAPEYGLSF 105 (303)
T ss_dssp CCBCCCCGGGTTCS
T ss_pred eEeCCCchhcCCCc
Confidence 45678888888876
No 8
>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.88 E-value=1.3e+02 Score=15.80 Aligned_cols=9 Identities=33% Similarity=0.438 Sum_probs=5.8
Q ss_pred cceeccCCC
Q 030806 75 RCLCFGKGL 83 (171)
Q Consensus 75 ~C~Cc~~~~ 83 (171)
.|.||+-++
T Consensus 2 kC~cC~cRL 10 (33)
T d1j2oa2 2 SCDLCGCRL 10 (33)
T ss_dssp CCSSSCSCC
T ss_pred ccccccccc
Confidence 578887543
No 9
>d1p8ba_ g.3.6.4 (A:) Pab1, subunit b {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=3.83 E-value=1.6e+02 Score=15.84 Aligned_cols=9 Identities=22% Similarity=0.641 Sum_probs=7.0
Q ss_pred CcceeecCC
Q 030806 41 EMTYCVYST 49 (171)
Q Consensus 41 ~~~~C~Yps 49 (171)
-..+|+||+
T Consensus 28 ~~G~c~~Ps 36 (37)
T d1p8ba_ 28 VIGYCRNPS 36 (37)
T ss_dssp SCEEEECTT
T ss_pred EEEEEecCC
Confidence 367899997
No 10
>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=3.81 E-value=1.2e+02 Score=15.30 Aligned_cols=8 Identities=25% Similarity=0.737 Sum_probs=5.3
Q ss_pred cceeccCC
Q 030806 75 RCLCFGKG 82 (171)
Q Consensus 75 ~C~Cc~~~ 82 (171)
+|.||.+.
T Consensus 2 kcg~c~kt 9 (28)
T d1a7ia1 2 KCGACGRT 9 (28)
T ss_dssp BCSSSCCB
T ss_pred ccccccce
Confidence 57777653
Done!