BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030807
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 82 VDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFI 135
+D CAVCL E E+ +E R L C H FH C+D W+ TCPLCR +
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV 54
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFI 135
CAVCL +F+ +DE+ + C+H FHR CL +W+ +K CPLC P +
Sbjct: 18 CAVCLEDFKPRDELG-ICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVL 63
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 87 SCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRT 132
C +CL EE +++RRL C H+FH+ C+D+W+ ++K CP+CR
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKK-CPICRV 59
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDD 138
C VC+ +FE + +R L C H FH C+D+W+ + +TCP+CR P
Sbjct: 26 CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKAN-RTCPICRADSGPSS 74
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIP 136
C +C E+ + D L C H FH+ C+ W+ TCP+CR F P
Sbjct: 43 CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQ-KSGTCPVCRCMFPP 89
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 87 SCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQD 141
SC +C + + E T+C+H+F R C+ R + CP CR P P D++
Sbjct: 25 SCQICEHILADPVE----TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 82 VDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFI 135
V D+C C E +++D + C H FH C+ W+ + + CPLC+ ++
Sbjct: 23 VQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNR-CPLCQQDWV 75
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDM 139
C VC ++ + +R+L C H+FH C+ W+ +CP+CR +
Sbjct: 18 CPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQNT 67
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 33.5 bits (75), Expect = 0.059, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTP 133
C +CL + + + C H+ HR C + M + CPLC P
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEE-MLKEGYRCPLCSGP 52
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCR 131
C +C E D+ ++ C H+ CL W D + CP CR
Sbjct: 341 CKIC----AENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCR 131
C +C E D+ ++ C H+ CL W + + CP CR
Sbjct: 337 CKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCR 131
C +C E D+ ++ C H+ CL W + + CP CR
Sbjct: 337 CKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCR 131
C +C E D+ ++ C H+ CL W + + CP CR
Sbjct: 335 CKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCR 131
C +C E D+ ++ C H+ CL W + + CP CR
Sbjct: 335 CKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCR 131
C +C E D+ ++ C H+ CL W D + CP CR
Sbjct: 29 CKICA----ENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 68
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 31.2 bits (69), Expect = 0.33, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 87 SCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLC 130
+C +CL + + + C H+ HR C + M + CPLC
Sbjct: 7 NCPICLEDIHTSRVVAHVLPCGHLLHRTCYEE-MLKEGYRCPLC 49
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCR 131
C +C E D+ ++ C H+ CL W + + CP CR
Sbjct: 30 CKICA----ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 69
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
Cellular Modulator Of Immune Recognition Protein
Length = 80
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 86 DSCAVCLYEFEEQDEIRRLTNCR---HIFHRGCLDRWM-AYDQKTCPLCRTPFI 135
D C +C E +++ + +C H H+ CL +W+ + D + C LC+ FI
Sbjct: 16 DICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY--DQKTCPLC 130
C +C+ F E+ +L +C H R CL++ +A + CP C
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCR 131
C +C E D+ ++ C H+ CL W + + CP CR
Sbjct: 27 CKICA----ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 66
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 86 DSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTP 133
+ C +CL E+ C H F C+ RW+ + TCPLC+ P
Sbjct: 6 ERCPICL---EDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVP 49
>pdb|3L4G|A Chain A, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|C Chain C, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|E Chain E, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|G Chain G, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|I Chain I, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|K Chain K, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|M Chain M, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|O Chain O, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 508
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQDSF 143
PP+ A Q E+ RL + + F + ++W+ D+ R + D M+D
Sbjct: 85 PPEGLA--------QSELMRLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEV 136
Query: 144 NERLWAASG 152
RL G
Sbjct: 137 QRRLQLVRG 145
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 106 NCRHIFHRGCLDRWMAYDQKTCPLCR 131
NC H F C++ WM + CP+CR
Sbjct: 70 NCAHSFCSYCINEWMKR-KIECPICR 94
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 80 ELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKT-----CPLCRTPF 134
E++ +C +CL +E +C H F R C+ ++ T CP+CR P+
Sbjct: 14 EMIKEEVTCPICLELLKEPVS----ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 106 NCRHIFHRGCLDRWMAYDQKTCPLCR 131
NC H F C++ WM + CP+CR
Sbjct: 70 NCAHSFCSYCINEWMKR-KIECPICR 94
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 101 IRRLTNCRHIFHRGCLDRWMAYDQK----TCPLCRTPF 134
+ RLT C H FH CL K CP C+T +
Sbjct: 55 VGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92
>pdb|3TSQ|A Chain A, Crystal Structure Of E. Coli Hypf With Atp And Carbamoyl
Phosphate
pdb|3TTD|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Cpp And
Carbamoyl Phosphate
Length = 658
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 79 SELVDPPDSCAVCLYEFEEQDEIRR---LTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFI 135
+++V +C CL E E R NC H R + R M YD+ + P
Sbjct: 11 TQIVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLC 70
Query: 136 P---DDMQDSFNERLWA 149
P + +D + R A
Sbjct: 71 PACDKEYRDPLDRRFHA 87
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 106 NCRHIFHRGCLDRWMAYDQKTCPLCRT 132
NC H F C++ WM + CP+CR
Sbjct: 81 NCAHSFCSYCINEWMKR-KIECPICRK 106
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 21/98 (21%)
Query: 46 DIDAPDSARAAAPLRPLSVSALLIREILPVVKFSELVDPPDSCAVCLYEF-----EEQDE 100
D+D P + A + V + + + +VD +CA+C E Q
Sbjct: 4 DVDTPSGTNSGAGKKRFEVKKW---NAVALWAWDIVVD---NCAICRNHIMDLCIECQAN 57
Query: 101 IRRLTN---------CRHIFHRGCLDRWMAYDQKTCPL 129
T+ C H FH C+ RW+ Q CPL
Sbjct: 58 QASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPL 94
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 107 CRHIFHRGCLDRWMAYDQKTCPLCR 131
C H F + C+D+W + + CP+CR
Sbjct: 32 CAHSFCQKCIDKW-SDRHRNCPICR 55
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 21/98 (21%)
Query: 46 DIDAPDSARAAAPLRPLSVSALLIREILPVVKFSELVDPPDSCAVCLYEF-----EEQDE 100
D+D P + A + V + + + +VD +CA+C E Q
Sbjct: 4 DVDTPSGTNSGAGKKRFEVKKW---NAVALWAWDIVVD---NCAICRNHIXDLCIECQAN 57
Query: 101 IRRLTN---------CRHIFHRGCLDRWMAYDQKTCPL 129
T+ C H FH C+ RW+ Q CPL
Sbjct: 58 QASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPL 94
>pdb|3L15|A Chain A, Human Tead2 Transcriptional Factor
pdb|3L15|B Chain B, Human Tead2 Transcriptional Factor
Length = 231
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 25/92 (27%)
Query: 73 LPVVKFSELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRT 132
L +V+FS V+PPD AV Y+ RH+F + + CP
Sbjct: 12 LQLVEFSAFVEPPD--AVDSYQ-------------RHLF---------VHISQHCPSPGA 47
Query: 133 PFIPD-DMQDSFNERLWAASGIPEFYDDDPPH 163
P + D++ +++ G+ E YD PPH
Sbjct: 48 PPLESVDVRQIYDKFPEKKGGLRELYDRGPPH 79
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 21/98 (21%)
Query: 46 DIDAPDSARAAAPLRPLSVSALLIREILPVVKFSELVDPPDSCAVCLYEF-----EEQDE 100
D+D P + A + V + + + +VD +CA+C E Q
Sbjct: 6 DVDTPSGTNSGAGKKRFEVKKW---NAVALWAWDIVVD---NCAICRNHIMDLCIECQAN 59
Query: 101 IRRLTN---------CRHIFHRGCLDRWMAYDQKTCPL 129
T+ C H FH C+ RW+ Q CPL
Sbjct: 60 QASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPL 96
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 107 CRHIFHRGCLDRWMAYDQKTCPL 129
C H FH C+ RW+ Q CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQ-VCPL 88
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 107 CRHIFHRGCLDRWMAYDQKTCPL 129
C H FH C+ RW+ Q CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQ-VCPL 105
>pdb|4FGM|A Chain A, Crystal Structure Of The Aminopeptidase N Family Protein
Q5qty1 From Idiomarina Loihiensis. Northeast Structural
Genomics Consortium Target Ilr60
Length = 597
Score = 26.6 bits (57), Expect = 8.2, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 90 VCLYEFEEQDEIRRLTN--CRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQ-DSFNER 146
+ +++E D + + C FH +++ KT L F+P ++ +S+ E+
Sbjct: 253 ISAHQYEXNDNYQTFLSLCCHEYFH--------SWNIKT--LKPKAFLPYQLEKESYTEQ 302
Query: 147 LWAASGIPEFYDDDPPHFSQV 167
LW G ++DD H S +
Sbjct: 303 LWFYEGXTSYFDDYLLHTSGI 323
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 107 CRHIFHRGCLDRWMAYDQKTCPL 129
C H FH C+ RW+ Q CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQ-VCPL 86
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 107 CRHIFHRGCLDRWMAYDQKTCPL 129
C H FH C+ RW+ Q CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQ-VCPL 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.144 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,441,895
Number of Sequences: 62578
Number of extensions: 210281
Number of successful extensions: 531
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 57
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)