BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030807
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SUS5|RHA1B_ARATH E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B
PE=2 SV=1
Length = 157
Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 90/153 (58%), Gaps = 9/153 (5%)
Query: 1 MGFPVVYSELIIPKLLLHTLSVLGFIRKLITILFTCLGLQDFLEPDIDAPDSARAAAPLR 60
MG P + EL IP +L TL V+GF R ++ L +GL FL D +++R+
Sbjct: 1 MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFL----DHNETSRSDPTRL 56
Query: 61 PLSVSALLIREILPVVKFSELV-DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRW 119
LS SA L E++PVV+FS+L+ DP D C VCL +F D+IR+L C H+FH CLDRW
Sbjct: 57 ALSTSATLANELIPVVRFSDLLTDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRW 116
Query: 120 MAYDQK-TCPLCRTPFIPDDMQDSFNERLWAAS 151
+ K TCP+CR F+P++ F+ W S
Sbjct: 117 IVDCNKITCPICRNRFLPEEKSTPFD---WGTS 146
>sp|Q9SUS4|RHA1A_ARATH RING-H2 zinc finger protein RHA1a OS=Arabidopsis thaliana GN=RHA1A
PE=2 SV=1
Length = 159
Score = 113 bits (282), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 13/163 (7%)
Query: 1 MGFPVVY-SELIIPKLLLHTLSVLGFIRKLITILFTCLGLQDFLE-PDIDAPDSARAAAP 58
MG P + +EL IP +L L V+GF R ++ L +GL FL+ + APD R A
Sbjct: 1 MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNETSAPDLTRHA-- 58
Query: 59 LRPLSVSALLIREILPVVKFSEL-VDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLD 117
LS SA L E++PVV+FS+L DP D C VCL +FE D++R+L C H+FH CLD
Sbjct: 59 ---LSTSASLANELIPVVRFSDLPTDPEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLD 115
Query: 118 RWMA-YDQKTCPLCRTPFIPDDMQDSFNERLWAASGIPEFYDD 159
RW+ Y++ CP+CR F+P ++ + + W SG F D+
Sbjct: 116 RWIVDYNKMKCPVCRHRFLP---KEKYTQSDW-GSGSDWFSDE 154
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 70.9 bits (172), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/47 (55%), Positives = 31/47 (65%)
Query: 86 DSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRT 132
+ C VCL FE DE RRL C H FHR C+D+W+ Q +CPLCRT
Sbjct: 523 ERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCRT 569
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 73 LPVVKFS-ELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCR 131
LPV FS E P CAVCL EFEE + R L NC+H FH C+D W + TCPLCR
Sbjct: 103 LPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWF-HSHSTCPLCR 161
Query: 132 T 132
+
Sbjct: 162 S 162
>sp|Q9SN28|ATL7_ARATH RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2
SV=1
Length = 236
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 69 IREILPVVKFSELVDPPDS-CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTC 127
IRE+LPVV + E DS C+VCL +++ +++++++ +C H FH C+D W+ TC
Sbjct: 91 IREMLPVVIYKESFIVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLT-SHTTC 149
Query: 128 PLCRTPFIP 136
PLCR IP
Sbjct: 150 PLCRLSLIP 158
>sp|Q9SN27|ATL59_ARATH E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59
PE=1 SV=1
Length = 225
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 69 IREILPVVKFSELVDPPDS-CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTC 127
IRE+LP+V + E D+ C+VCL +++ +++++++ +C H FH C+D W+ TC
Sbjct: 77 IREMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLT-SHTTC 135
Query: 128 PLCRTPFIPDDMQDSFNERLWAASGI 153
PLCR IP D ++ + S I
Sbjct: 136 PLCRLSLIPKPSVDLSHQSIEIVSSI 161
>sp|Q570X5|ATL58_ARATH RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2
SV=1
Length = 261
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 69 IREILPVVKFSELVDPPDS-CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTC 127
+RE+LP+V F E DS C+VCL +++ D+++++ C+H FH C+D W+ TC
Sbjct: 80 LREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWLT-SHTTC 138
Query: 128 PLCRTPFIPDDMQDS 142
PLCR IP + S
Sbjct: 139 PLCRLALIPSRSRQS 153
>sp|Q9ZT50|RHA2A_ARATH E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A
PE=1 SV=1
Length = 155
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
Query: 12 IPKLLLHTLSVLGFIRKLITILFTCLGLQDFLEPDIDAPDSARAAAPLRPLSVSALLIRE 71
IP +LL L+V FI L + L L L P++ D + A+ + ++ L
Sbjct: 15 IPLMLLSLLAV--FINHLRSFL---LRLTSKSNPNLPVDDVSIASGLANIIVLADQLSLN 69
Query: 72 ILPVVKFSELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCR 131
L + + C VCL + +E +E+R+L CRH+FH+ CL+ W+ TCPLCR
Sbjct: 70 RLFSYRCGDGGGGGSDCVVCLSKLKEGEEVRKL-ECRHVFHKKCLEGWLHQFNFTCPLCR 128
Query: 132 TPFIPDD 138
+ + DD
Sbjct: 129 SALVSDD 135
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 73 LPVVKFSELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRT 132
LP +K S L + D CA+C +EF R+T C H FH CL +W+ Y Q TCP+C
Sbjct: 532 LPEIKGSRLQEINDVCAICYHEFTTS---ARITPCNHYFHALCLRKWL-YIQDTCPMCHQ 587
Query: 133 P-FIPDDMQDSFN 144
+I DD++D+ N
Sbjct: 588 KVYIEDDIKDNSN 600
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQ 140
+ C VCL + + +E+R+L +CRH+FH+ CL+ W+ + CPLCR+P +P Q
Sbjct: 69 NAASDCIVCLSKLKTGEEVRKL-DCRHVFHKQCLEGWLQHLNFNCPLCRSPLLPHHHQ 125
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 73 LPVVKFSELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRT 132
LPV KF + D D CA+CL E+E+ D++R L C H +H C+D W+ +KTCP+C+
Sbjct: 226 LPVHKFKK-GDEYDVCAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCPVCKQ 283
Query: 133 PFIP-----DDMQDSFNERLWAASGIP 154
+P D DS E + P
Sbjct: 284 KVVPSQGDSDSETDSSQEENEVSENTP 310
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 73 LPVVKFSELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRT 132
LP +K S L + D CA+C +EF R+T C H FH CL +W+ Y Q TCP+C
Sbjct: 532 LPEIKGSRLQEINDVCAICYHEFTTSA---RITPCNHYFHALCLRKWL-YIQDTCPMCHQ 587
Query: 133 P-FIPDDMQDSFN 144
+I DD++D+ N
Sbjct: 588 KVYIEDDIKDNSN 600
>sp|Q9LY41|ATL4_ARATH E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana GN=ATL4
PE=1 SV=1
Length = 334
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 73 LPVVKFSELVDPPDS-----CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTC 127
LP+ KFS + S CAVCL +FE +D++R L C H FH C+D W+ +Q TC
Sbjct: 97 LPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWLVSNQ-TC 155
Query: 128 PLCRTPFIPDD 138
PLCR+P +
Sbjct: 156 PLCRSPLFASE 166
>sp|Q6NKR1|ATL28_ARATH RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2
SV=1
Length = 254
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 29 LITILFTCLGLQDFLEPDIDAPDSARAAAPLRPLSVSALLIREILPVVKFSELV--DPPD 86
L+ LFT LQ D+ A P + +IR PV +S +
Sbjct: 48 LLNRLFTTWNLQRTPYGDL-----IHVATPPENTGLDPFIIRS-FPVFHYSSATKKNHGT 101
Query: 87 SCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCR 131
CA+CL EF ++D +R +T CRH FH C+D W KTCP+CR
Sbjct: 102 ECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFEL-HKTCPVCR 145
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 73 LPVVKFSELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRT 132
LPV KF + D D CA+CL E+E+ D++R L C H +H C+D W+ +KTCP+C+
Sbjct: 226 LPVHKFKK-GDEYDVCAICLEEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCPVCKQ 283
Query: 133 PFIP 136
+P
Sbjct: 284 KVVP 287
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 73 LPVVKFSELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRT 132
LPV KF + D D CA+CL E+E+ D++R L C H +H C+D W+ +KTCP+C+
Sbjct: 226 LPVHKFKK-GDEYDVCAICLEEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCPVCKQ 283
Query: 133 PFIP 136
+P
Sbjct: 284 KVVP 287
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 69 IREILPVVKFSELV--DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKT 126
+ E +P+ +S P + C+VCL EFEE DE R L C H+FH C+D W + +
Sbjct: 92 VLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWF-RSRSS 150
Query: 127 CPLCRTPFIP 136
CPLCR P P
Sbjct: 151 CPLCRAPVQP 160
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 73 LPVVKFSELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRT 132
LP +K S L + D CA+C +EF R+T C H FH CL +W+ Y Q TCP+C
Sbjct: 532 LPEIKGSHLQEIDDVCAICYHEFTTS---ARITPCNHYFHALCLRKWL-YIQDTCPMCHQ 587
Query: 133 P-FIPDDMQDSFN 144
+I D+++D+ N
Sbjct: 588 KVYIEDEIKDNSN 600
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIP 136
CAVCL EE+D R L NC+H+FH C+D W+ Q TCP+CRT P
Sbjct: 100 CAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTT-QSTCPVCRTEAEP 147
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 71 EILPVVKFSELVDPPDS--CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCP 128
E LP+ +FS L C+VCL +FE + +R L CRH FH GC+D+W+ TCP
Sbjct: 104 ESLPLFRFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLE-QHATCP 162
Query: 129 LCR 131
LCR
Sbjct: 163 LCR 165
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 73 LPVVKFSELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRT 132
LPV KF + D D CA+CL E+E+ D++R L C H +H C+D W+ +KTCP+C+
Sbjct: 226 LPVHKFKK-GDEYDVCAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCPVCKQ 283
Query: 133 PFIP 136
+P
Sbjct: 284 KVVP 287
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 73 LPVVKFSELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRT 132
LPV KF + D D CA+CL E+E+ D++R L C H +H C+D W+ +KTCP+C+
Sbjct: 226 LPVHKFKK-GDEYDVCAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCPVCKQ 283
Query: 133 PFIP 136
+P
Sbjct: 284 KVVP 287
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 73 LPVVKFSELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRT 132
LPV KF + D D CA+CL E+E+ D++R L C H +H C+D W+ +KTCP+C+
Sbjct: 226 LPVHKFKK-GDEYDVCAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCPVCKQ 283
Query: 133 PFIP 136
+P
Sbjct: 284 KVVP 287
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 71 EILPVVKFSELVDPPDS--CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCP 128
E LP +FS L C+VCL +FE+ + +R L CRH FH GC+D+W+ TCP
Sbjct: 105 ESLPFFRFSALKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLE-QHATCP 163
Query: 129 LCRTPF-IPDDM 139
LCR I DD+
Sbjct: 164 LCRNRVNIEDDL 175
>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2
SV=1
Length = 369
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 71 EILPVVKFSEL--VDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCP 128
+ LPV + E+ P CAVCL EF E D++R L NC H FH C+D W+ + TCP
Sbjct: 125 DALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNS-TCP 183
Query: 129 LCR 131
LCR
Sbjct: 184 LCR 186
>sp|O22255|ATL64_ARATH RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2
SV=1
Length = 227
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIP 136
C+VCL EFEE+DE R L C H FH C+D W + TCPLCR P P
Sbjct: 108 CSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWF-RSRSTCPLCRAPVQP 155
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 86 DSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCR 131
DSC +CL + D R+L C+H FH+ C+D+W+ +CPLCR
Sbjct: 764 DSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCR 809
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 58 PLRPLSVSALLIREILPVVKFSELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLD 117
P L SA+ ++ K ++D + C+VCL EFEE + +R L C H FH C+D
Sbjct: 106 PTVGLHRSAINSITVVGFKKGEGIIDGTE-CSVCLNEFEEDESLRLLPKCSHAFHLNCID 164
Query: 118 RWMAYDQKTCPLCRTPFI 135
W+ K CPLCR P +
Sbjct: 165 TWL-LSHKNCPLCRAPVL 181
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 71 EILPVVKFSELVDPPDS--CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCP 128
E LPV +F L D CAVCL FE + +R L C+H FH C+D W+ TCP
Sbjct: 127 ESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDA-HSTCP 185
Query: 129 LCRTPFIPDDM 139
LCR P+D+
Sbjct: 186 LCRYRVDPEDI 196
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 11 IIPKLLLHTLSVLGFIRKLITILFT-CLGLQD-FLEPDIDAPDSARAAAPLRPLSVSALL 68
+I +L+ L +GF +I F C G+ D + P A A A R L VS +
Sbjct: 51 VIVVILIAALFFMGFF----SIYFRHCSGVPDAGVSPAGGARSRATVNAAARGLDVSVV- 105
Query: 69 IREILPV-----VKFSELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYD 123
E P VK +L CA+CL EFE+ + +R L C H+FH C+D W+
Sbjct: 106 --ETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEA- 162
Query: 124 QKTCPLCR 131
TCP+CR
Sbjct: 163 HVTCPVCR 170
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIP 136
C VCL EFE+ + +R + C H+FH GC+D W+ Q TCPLCR +P
Sbjct: 118 CPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWL-RSQTTCPLCRANLVP 165
>sp|Q84TF5|RHA4A_ARATH RING-H2 zinc finger protein RHA4a OS=Arabidopsis thaliana GN=RHA4A
PE=2 SV=1
Length = 174
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 69 IREILPVVKFSELVDPPDS-CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTC 127
+++ L VV F+E + DS C VCL EFE ++E+ + C+HIFH C+ W+ Y TC
Sbjct: 85 LKDKLHVVLFNEELGTRDSLCCVCLGEFELKEELVEMPLCKHIFHLDCIHLWL-YSHNTC 143
Query: 128 PLCRT 132
PLCR+
Sbjct: 144 PLCRS 148
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIP 136
CAVCL +EQD+ R L NC+HIFH C+D W+ TCP+CRT P
Sbjct: 108 CAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTT-CSTCPVCRTEVEP 155
>sp|Q940Q4|ATL13_ARATH RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2
SV=2
Length = 472
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 71 EILPVVKFSELV---DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTC 127
+ LPV + ++ + P CAVCL EFE +D++R L C H FH C+D W+ TC
Sbjct: 114 DTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL-LSHSTC 172
Query: 128 PLCR 131
PLCR
Sbjct: 173 PLCR 176
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 88 CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIP 136
C+VCL EFE+ + +R + C H+FH GC+D W+ TCPLCR IP
Sbjct: 144 CSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWL-RSHTTCPLCRADLIP 191
>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2
SV=1
Length = 376
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 14/79 (17%)
Query: 71 EILPVVKFSELV------------DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDR 118
+ LPV + E+V P CAVCL EF E+D++R L C H FH C+D
Sbjct: 114 DALPVFHYKEIVGSAGGGGGNGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDT 173
Query: 119 WMAYDQKTCPLCR-TPFIP 136
W+ + TCPLCR T F P
Sbjct: 174 WLQSNS-TCPLCRGTLFSP 191
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 71 EILPVVKFSEL---VDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTC 127
+ LPV + + ++ P CAVCL EF + D++R L C H FH C+D W+ TC
Sbjct: 187 DALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWL-LSNSTC 245
Query: 128 PLCRTPFIPDDMQDSFNERLWAASGIPEFYDDDPPHFSQ 166
PLCR ++ + +E L A + DD ++
Sbjct: 246 PLCRRSLSTSNVCYNHSETLVAPLSGHQQVDDGKASLAK 284
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 46 DIDAPDSARAAAPLRPLSVSALLIREILPVVKFSELVDPPDS-------CAVCLYEFEEQ 98
D+++P+ P S +A L ++ + F +L + C++CL EF E
Sbjct: 106 DVNSPERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNED 165
Query: 99 DEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFI 135
+ +R L C H FH C+DRW+ CPLCR I
Sbjct: 166 ESLRLLPKCNHTFHVVCIDRWLK-SHSNCPLCRAKII 201
>sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2
SV=1
Length = 375
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 18/90 (20%)
Query: 59 LRPLSVSALLIREILPVVKFSELVDPPDS----------------CAVCLYEFEEQDEIR 102
LR + +IR I P+ KF + D D C+VCL EF++++++R
Sbjct: 94 LRSRGLDESVIRAI-PIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLR 152
Query: 103 RLTNCRHIFHRGCLDRWMAYDQKTCPLCRT 132
+ NC H+FH C+D W+ + CPLCRT
Sbjct: 153 IIPNCSHLFHIDCIDVWLQ-NNANCPLCRT 181
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 26 IRKLITILFTCLGLQDFLEPDIDAPDSAR----AAAPLRPLSVSALLIREILPVVKFS-- 79
I LI L ++ FL P ++ D + AAA P + P + +S
Sbjct: 48 ISALICALSLYAAIRCFLRPTLETEDDHKPDPEAAASSTPTT----------PTLVYSSD 97
Query: 80 -ELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRT 132
EL CA+CL EFE+ + I+ L C+H FH C+ +W++ + +CP CRT
Sbjct: 98 LELAGAEAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLS-TRSSCPTCRT 150
>sp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2
SV=1
Length = 217
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 74 PVVKFSELVDPPDS--CAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCR 131
P + +SE P + CA+CL +++ + +R+L +C H+FH C+D W+ + TCP+CR
Sbjct: 131 PKILYSEAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLN-PTCPVCR 189
Query: 132 TPFIPDDMQDSFNERLWAASGI 153
T +P + E + AS +
Sbjct: 190 TSPLPTPLSTPLAEVVPLASSV 211
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 10 LIIPKLLLHT--LSVLGFIRKLITILFTCLGL-QDFLEPDIDAPDSARAAAPLRPLSVSA 66
+I P +LL+ LS++ F+ LI +L L Q L+ D + A R +
Sbjct: 31 MISPIVLLYITLLSIIFFVAALIHLLVKFLHRPQTRLDDAYDGITESSTALQGRYQTRFN 90
Query: 67 LLIREI-------LPVVKFSELV----DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGC 115
L EI LP++ + ++ D D CAVCL EF +DE+R L C H FH C
Sbjct: 91 LHDAEIDQSFIDALPLLHYKTMIGLRHDLSD-CAVCLREFTAEDELRLLPKCSHAFHVEC 149
Query: 116 LDRWMAYDQKTCPLCR 131
+D W+ + TCPLCR
Sbjct: 150 IDTWLLTN-STCPLCR 164
>sp|Q9ZT49|ATL45_ARATH RING-H2 finger protein ATL45 OS=Arabidopsis thaliana GN=ATL45 PE=2
SV=1
Length = 200
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQDS 142
D CA+C+ EF E +EIR L C H FH C+D+W+ + +CP CR +P
Sbjct: 108 DSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWL-TSRSSCPSCRRILVPVKCDRC 166
Query: 143 FNERLWAASGIPEFYDDDPPHFSQ 166
+ AS D PPH
Sbjct: 167 GHH----ASTAETQVKDQPPHHQH 186
>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2
SV=1
Length = 289
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 41/58 (70%), Gaps = 5/58 (8%)
Query: 88 CAVCLYEFEEQD-EIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRT---PFIPDDMQD 141
CA+CL EFEE+ +R LT C H+FH+ C+D+W+ + KTCP+CR P P+++++
Sbjct: 114 CAICLLEFEEEHILLRLLTTCYHVFHQECIDQWLESN-KTCPVCRRNLDPNAPENIKE 170
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 71 EILPVVKFSELVD---PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTC 127
+ LPV + +V P C VCL EFE +D++R L C H FH C+D W+ TC
Sbjct: 106 DTLPVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWL-LSHSTC 164
Query: 128 PLCRTPFI 135
PLCR+ +
Sbjct: 165 PLCRSNLL 172
>sp|Q9LS99|ATL77_ARATH RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2
SV=1
Length = 220
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 11 IIPKLLLHTLSVLGFIRKLITILFTCLGLQDFLEPD-IDAPDSARAAAPLRPLSVSALLI 69
II L LH + FIR + F+ D I P + R ++ + + AL
Sbjct: 63 IICSLGLHYIIRCAFIRS-----------RSFMISDPISIPSTPRDSSVNKGIKKKAL-- 109
Query: 70 REILPVVKFSELVDPP---DSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKT 126
++LPVV +S ++ P + C +CL +F +++R L C H FH C+D+W+ T
Sbjct: 110 -KMLPVVNYSPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLT-QHMT 167
Query: 127 CPLCR 131
CP CR
Sbjct: 168 CPKCR 172
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 86 DSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTP 133
D CA+CL E+E+ D++R L C H +H C+D W+ +KTCP+C+ P
Sbjct: 228 DVCAICLDEYEDGDKLRVLP-CAHAYHSRCVDPWLTQTRKTCPICKQP 274
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTP 133
D D CA+CL E+E+ D++R L C H +H C+D W+ +KTCP+C+ P
Sbjct: 225 DQYDVCAICLDEYEDGDKLRVLP-CAHAYHSRCVDPWLTQTRKTCPICKQP 274
>sp|Q94BY6|ATL75_ARATH RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2
SV=1
Length = 226
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 21 SVLGFIRKLITILFTCLGLQDFLEPDIDAPDSARAAAPLRPLS---------VSALLIRE 71
+VL + LI + CLGL + S + P+ LS ++ +R
Sbjct: 58 NVLMLLSVLICGIICCLGLHYIIRCAFRRTSSFMISEPIAGLSTPCGSSNKGINKKALR- 116
Query: 72 ILPVVKFSELVDPP---DSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCP 128
+ PVV +S ++ P + C +CL +F ++IR L C H FH C+D+W+ TCP
Sbjct: 117 MFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWL-QQHLTCP 175
Query: 129 LCR 131
CR
Sbjct: 176 KCR 178
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTP 133
D D CA+CL E+E+ D++R L C H +H C+D W+ +KTCP+C+ P
Sbjct: 225 DEYDVCAICLDEYEDGDKLRILP-CAHAYHSRCVDPWLTQTRKTCPICKQP 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.144 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,042,161
Number of Sequences: 539616
Number of extensions: 2740830
Number of successful extensions: 7648
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 381
Number of HSP's that attempted gapping in prelim test: 7144
Number of HSP's gapped (non-prelim): 639
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)