Query 030807
Match_columns 171
No_of_seqs 157 out of 1760
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 07:18:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 7.1E-16 2.4E-20 104.2 8.0 73 61-136 14-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 1.1E-15 3.8E-20 99.4 4.5 64 72-137 8-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 3.5E-15 1.2E-19 91.2 3.8 52 83-135 3-54 (55)
4 2ect_A Ring finger protein 126 99.5 1.9E-14 6.5E-19 94.1 4.1 56 83-140 13-68 (78)
5 2ep4_A Ring finger protein 24; 99.5 2.4E-14 8.3E-19 92.6 4.1 52 83-136 13-64 (74)
6 2kiz_A E3 ubiquitin-protein li 99.5 4.4E-14 1.5E-18 90.2 5.2 52 83-136 12-63 (69)
7 2ecl_A Ring-box protein 2; RNF 99.4 2.4E-14 8.2E-19 94.7 2.0 53 84-137 14-77 (81)
8 3ng2_A RNF4, snurf, ring finge 99.4 9.9E-14 3.4E-18 88.8 3.8 55 83-139 8-66 (71)
9 2ecm_A Ring finger and CHY zin 99.4 1.1E-13 3.7E-18 84.3 3.7 50 84-135 4-54 (55)
10 2xeu_A Ring finger protein 4; 99.4 2.5E-13 8.7E-18 85.0 3.7 54 84-139 2-59 (64)
11 2ea6_A Ring finger protein 4; 99.4 4.2E-13 1.4E-17 85.2 4.8 52 83-136 13-68 (69)
12 2ecy_A TNF receptor-associated 99.4 6.4E-13 2.2E-17 84.1 5.4 52 83-138 13-64 (66)
13 1v87_A Deltex protein 2; ring- 99.4 4.7E-13 1.6E-17 93.5 5.0 52 84-135 24-93 (114)
14 1g25_A CDK-activating kinase a 99.4 7.2E-13 2.5E-17 83.6 4.7 57 84-140 2-59 (65)
15 3dpl_R Ring-box protein 1; ubi 99.4 5.1E-13 1.7E-17 92.7 4.3 51 83-135 35-100 (106)
16 2djb_A Polycomb group ring fin 99.3 1.3E-12 4.6E-17 84.0 4.6 54 83-140 13-66 (72)
17 2ysl_A Tripartite motif-contai 99.3 2.4E-12 8.1E-17 82.8 5.3 53 83-139 18-72 (73)
18 2d8t_A Dactylidin, ring finger 99.3 6.4E-13 2.2E-17 85.3 2.0 50 83-137 13-62 (71)
19 1t1h_A Gspef-atpub14, armadill 99.3 2.1E-12 7.3E-17 84.2 4.3 54 83-140 6-59 (78)
20 2ct2_A Tripartite motif protei 99.3 6.8E-12 2.3E-16 83.3 6.0 56 83-139 13-71 (88)
21 3lrq_A E3 ubiquitin-protein li 99.3 1.5E-12 5.2E-17 89.2 2.8 54 83-139 20-73 (100)
22 1chc_A Equine herpes virus-1 r 99.3 2.2E-12 7.4E-17 81.9 3.0 49 83-135 3-51 (68)
23 2d8s_A Cellular modulator of i 99.3 4.6E-12 1.6E-16 83.5 4.5 53 83-137 13-71 (80)
24 2yur_A Retinoblastoma-binding 99.3 5.2E-12 1.8E-16 81.8 4.6 51 83-136 13-64 (74)
25 2ecn_A Ring finger protein 141 99.2 1.3E-12 4.3E-17 83.5 1.4 50 83-138 13-62 (70)
26 4a0k_B E3 ubiquitin-protein li 99.2 8E-13 2.7E-17 93.2 0.2 52 83-135 46-111 (117)
27 3fl2_A E3 ubiquitin-protein li 99.2 5.5E-12 1.9E-16 89.4 4.5 50 83-136 50-99 (124)
28 4ayc_A E3 ubiquitin-protein li 99.2 5.1E-12 1.7E-16 91.3 4.2 49 84-137 52-100 (138)
29 2egp_A Tripartite motif-contai 99.2 3.7E-12 1.3E-16 83.0 3.0 54 83-140 10-69 (79)
30 2csy_A Zinc finger protein 183 99.2 7.4E-12 2.5E-16 82.2 4.2 48 83-135 13-60 (81)
31 2ecw_A Tripartite motif-contai 99.2 1.6E-11 5.3E-16 80.8 4.8 53 83-139 17-74 (85)
32 2ysj_A Tripartite motif-contai 99.2 2.2E-11 7.5E-16 76.2 4.9 45 82-130 17-63 (63)
33 2y43_A E3 ubiquitin-protein li 99.2 9.2E-12 3.1E-16 84.8 3.3 53 83-139 20-72 (99)
34 4ap4_A E3 ubiquitin ligase RNF 99.2 1.4E-11 4.7E-16 87.5 4.3 55 83-139 5-63 (133)
35 3ztg_A E3 ubiquitin-protein li 99.2 3E-11 1E-15 81.1 5.8 48 83-134 11-60 (92)
36 2ecv_A Tripartite motif-contai 99.2 2E-11 6.9E-16 80.3 4.3 53 83-139 17-74 (85)
37 1z6u_A NP95-like ring finger p 99.2 2.4E-11 8.2E-16 89.1 4.7 50 84-137 77-126 (150)
38 2ct0_A Non-SMC element 1 homol 99.1 3.8E-11 1.3E-15 77.8 4.9 50 83-135 13-63 (74)
39 2ecj_A Tripartite motif-contai 99.1 4.3E-11 1.5E-15 73.3 4.6 44 83-130 13-58 (58)
40 3hct_A TNF receptor-associated 99.1 2.9E-11 9.8E-16 85.0 3.8 56 80-139 13-68 (118)
41 2ckl_A Polycomb group ring fin 99.1 2.6E-11 8.9E-16 83.9 3.5 51 83-137 13-63 (108)
42 1e4u_A Transcriptional repress 99.1 8.4E-11 2.9E-15 77.1 5.1 56 83-139 9-65 (78)
43 2ckl_B Ubiquitin ligase protei 99.1 3.2E-11 1.1E-15 89.4 3.4 50 84-136 53-102 (165)
44 3l11_A E3 ubiquitin-protein li 99.1 1.4E-11 4.6E-16 86.2 0.7 49 83-135 13-61 (115)
45 1rmd_A RAG1; V(D)J recombinati 99.1 4.1E-11 1.4E-15 83.9 3.0 53 83-139 21-73 (116)
46 1jm7_A BRCA1, breast cancer ty 99.1 5.8E-11 2E-15 82.3 3.6 52 84-139 20-73 (112)
47 4ap4_A E3 ubiquitin ligase RNF 99.1 4.4E-11 1.5E-15 84.8 2.5 55 83-139 70-128 (133)
48 2kr4_A Ubiquitin conjugation f 99.0 1.5E-10 5.3E-15 76.9 3.1 54 83-141 12-65 (85)
49 3knv_A TNF receptor-associated 99.0 9.5E-11 3.2E-15 85.1 2.1 52 80-135 26-77 (141)
50 2kre_A Ubiquitin conjugation f 99.0 2.4E-10 8.2E-15 78.3 4.0 57 83-144 27-83 (100)
51 1wgm_A Ubiquitin conjugation f 99.0 3.6E-10 1.2E-14 77.2 3.9 55 83-142 20-75 (98)
52 2y1n_A E3 ubiquitin-protein li 98.9 8E-10 2.7E-14 92.1 4.1 52 83-138 330-381 (389)
53 3hcs_A TNF receptor-associated 98.9 8.7E-10 3E-14 82.0 3.7 56 80-139 13-68 (170)
54 1jm7_B BARD1, BRCA1-associated 98.9 4E-10 1.4E-14 79.0 1.7 51 83-139 20-70 (117)
55 2yu4_A E3 SUMO-protein ligase 98.9 1.1E-09 3.8E-14 74.0 3.5 58 83-143 5-70 (94)
56 2c2l_A CHIP, carboxy terminus 98.9 2.2E-09 7.6E-14 84.9 5.5 56 83-142 206-261 (281)
57 1bor_A Transcription factor PM 98.9 6.9E-10 2.4E-14 67.9 1.9 46 83-136 4-49 (56)
58 2vje_A E3 ubiquitin-protein li 98.8 1.6E-09 5.4E-14 68.2 3.1 49 84-135 7-56 (64)
59 1wim_A KIAA0161 protein; ring 98.8 1.9E-09 6.4E-14 72.7 2.8 57 84-141 4-71 (94)
60 2vje_B MDM4 protein; proto-onc 98.8 3.3E-09 1.1E-13 66.4 3.0 49 84-135 6-55 (63)
61 4ic3_A E3 ubiquitin-protein li 98.8 1.9E-09 6.5E-14 69.6 1.5 43 84-135 23-66 (74)
62 3k1l_B Fancl; UBC, ring, RWD, 98.7 1.6E-09 5.5E-14 88.6 1.3 53 83-135 306-372 (381)
63 2f42_A STIP1 homology and U-bo 98.7 5.8E-09 2E-13 78.5 3.9 56 83-142 104-159 (179)
64 2ecg_A Baculoviral IAP repeat- 98.6 2.3E-08 8E-13 64.5 2.5 44 84-136 24-68 (75)
65 3htk_C E3 SUMO-protein ligase 98.6 2.2E-08 7.4E-13 79.2 2.5 55 84-141 180-237 (267)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.5 1.5E-07 5.3E-12 58.3 4.6 49 83-135 4-58 (60)
67 2ea5_A Cell growth regulator w 98.4 1.3E-07 4.5E-12 60.0 3.4 46 82-136 12-58 (68)
68 2yho_A E3 ubiquitin-protein li 98.4 4.8E-08 1.6E-12 63.8 0.8 44 84-136 17-61 (79)
69 3vk6_A E3 ubiquitin-protein li 98.3 5.9E-07 2E-11 60.7 4.1 46 87-135 3-48 (101)
70 2bay_A PRE-mRNA splicing facto 98.3 2.8E-07 9.7E-12 57.2 1.7 52 85-140 3-54 (61)
71 3t6p_A Baculoviral IAP repeat- 98.2 2E-07 6.7E-12 76.8 0.9 44 83-135 293-337 (345)
72 3nw0_A Non-structural maintena 97.9 9.5E-06 3.3E-10 63.5 5.1 50 84-136 179-229 (238)
73 2ko5_A Ring finger protein Z; 95.3 0.0056 1.9E-07 40.7 1.3 49 83-138 26-75 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 94.1 0.032 1.1E-06 37.0 2.9 35 84-119 2-36 (101)
75 2lri_C Autoimmune regulator; Z 93.8 0.066 2.3E-06 33.2 3.6 48 83-134 10-60 (66)
76 1z60_A TFIIH basal transcripti 88.4 0.4 1.4E-05 29.0 3.0 44 86-131 16-59 (59)
77 1weo_A Cellulose synthase, cat 86.8 1.4 4.8E-05 28.8 5.0 52 84-135 15-69 (93)
78 2k16_A Transcription initiatio 83.5 0.48 1.6E-05 29.6 1.6 50 83-133 16-68 (75)
79 2l5u_A Chromodomain-helicase-D 83.0 0.51 1.8E-05 28.4 1.5 46 83-132 9-57 (61)
80 3v43_A Histone acetyltransfera 82.7 1.9 6.6E-05 29.0 4.6 49 83-131 3-62 (112)
81 2vpb_A Hpygo1, pygopus homolog 82.4 1.1 3.6E-05 27.5 2.8 35 83-117 6-41 (65)
82 3m62_A Ubiquitin conjugation f 78.5 1.2 4.1E-05 41.0 3.0 58 83-145 889-947 (968)
83 3u5n_A E3 ubiquitin-protein li 78.1 0.58 2E-05 35.2 0.7 47 83-133 5-54 (207)
84 1wil_A KIAA1045 protein; ring 77.6 2.1 7.1E-05 27.8 3.1 36 82-119 12-47 (89)
85 1mm2_A MI2-beta; PHD, zinc fin 76.3 0.64 2.2E-05 28.0 0.4 48 83-134 7-57 (61)
86 2lbm_A Transcriptional regulat 74.8 4 0.00014 29.0 4.3 47 83-133 61-117 (142)
87 1we9_A PHD finger family prote 74.7 1.6 5.4E-05 26.2 1.9 50 83-132 4-57 (64)
88 3o36_A Transcription intermedi 74.6 0.85 2.9E-05 33.5 0.7 47 84-134 3-52 (184)
89 2l8s_A Integrin alpha-1; trans 72.6 9.2 0.00031 22.5 4.8 33 1-36 1-33 (54)
90 2kwj_A Zinc finger protein DPF 72.4 0.96 3.3E-05 30.7 0.5 46 86-131 2-59 (114)
91 2yt5_A Metal-response element- 72.1 1.6 5.5E-05 26.4 1.5 51 83-133 4-61 (66)
92 2ri7_A Nucleosome-remodeling f 71.5 0.98 3.3E-05 32.8 0.4 49 83-132 6-58 (174)
93 1vfy_A Phosphatidylinositol-3- 70.6 2.7 9.2E-05 26.1 2.3 33 85-117 11-43 (73)
94 2l43_A N-teminal domain from h 70.2 3.7 0.00013 26.5 3.0 54 83-136 23-78 (88)
95 3ql9_A Transcriptional regulat 69.2 8.6 0.0003 26.7 4.9 47 83-133 55-111 (129)
96 1f62_A Transcription factor WS 68.8 2.5 8.7E-05 24.1 1.8 45 87-132 2-49 (51)
97 3v43_A Histone acetyltransfera 68.8 1.3 4.3E-05 30.0 0.5 48 85-132 61-111 (112)
98 2ysm_A Myeloid/lymphoid or mix 68.7 1.1 3.9E-05 30.0 0.3 48 83-131 5-55 (111)
99 2ku3_A Bromodomain-containing 68.7 4.6 0.00016 25.0 3.1 49 83-131 14-64 (71)
100 1wep_A PHF8; structural genomi 68.1 5 0.00017 25.2 3.2 52 84-136 11-66 (79)
101 1z2q_A LM5-1; membrane protein 68.1 3 0.0001 26.6 2.2 36 83-118 19-54 (84)
102 1wfk_A Zinc finger, FYVE domai 68.1 3.5 0.00012 26.6 2.5 36 83-118 7-42 (88)
103 1fp0_A KAP-1 corepressor; PHD 68.0 1.7 5.9E-05 28.3 1.0 47 83-133 23-72 (88)
104 1joc_A EEA1, early endosomal a 67.6 2.9 9.8E-05 28.9 2.2 34 85-118 69-102 (125)
105 3t7l_A Zinc finger FYVE domain 67.5 3 0.0001 27.0 2.2 36 84-119 19-54 (90)
106 2yw8_A RUN and FYVE domain-con 67.2 3.1 0.00011 26.4 2.1 36 83-118 17-52 (82)
107 2cs3_A Protein C14ORF4, MY039 64.3 20 0.00068 22.9 5.4 40 83-122 13-52 (93)
108 1dvp_A HRS, hepatocyte growth 63.5 2.8 9.7E-05 31.6 1.6 35 84-118 160-194 (220)
109 1zfo_A LAsp-1; LIM domain, zin 62.9 3.7 0.00013 21.0 1.5 27 86-115 4-30 (31)
110 3zyq_A Hepatocyte growth facto 62.9 3.2 0.00011 31.5 1.8 35 84-118 163-197 (226)
111 1x4u_A Zinc finger, FYVE domai 62.1 3.8 0.00013 26.1 1.8 34 84-117 13-46 (84)
112 2kgg_A Histone demethylase jar 62.0 2.1 7.3E-05 24.7 0.5 45 87-131 4-52 (52)
113 2lv9_A Histone-lysine N-methyl 61.8 6.2 0.00021 25.9 2.9 47 85-133 28-76 (98)
114 3i2d_A E3 SUMO-protein ligase 60.5 7.4 0.00025 32.0 3.7 53 86-141 250-305 (371)
115 2ro1_A Transcription intermedi 60.2 1.9 6.4E-05 32.0 0.0 45 85-133 2-49 (189)
116 1zbd_B Rabphilin-3A; G protein 59.2 4.4 0.00015 28.4 1.9 35 83-117 53-88 (134)
117 4fo9_A E3 SUMO-protein ligase 58.4 8.6 0.00029 31.5 3.7 53 86-141 216-271 (360)
118 3lqh_A Histone-lysine N-methyl 58.1 5 0.00017 29.6 2.1 51 85-135 2-65 (183)
119 1y02_A CARP2, FYVE-ring finger 57.5 4.7 0.00016 27.7 1.7 47 84-131 18-64 (120)
120 3vhs_A ATPase wrnip1; zinc fin 56.6 2.2 7.6E-05 21.1 -0.1 18 125-142 7-24 (29)
121 2xb1_A Pygopus homolog 2, B-ce 55.6 5.2 0.00018 26.7 1.6 49 85-133 3-61 (105)
122 2gmg_A Hypothetical protein PF 54.6 2.8 9.7E-05 28.2 0.2 23 106-134 72-94 (105)
123 3mpx_A FYVE, rhogef and PH dom 53.8 2.7 9.3E-05 34.5 0.0 37 84-120 374-410 (434)
124 2puy_A PHD finger protein 21A; 51.9 6.6 0.00023 23.2 1.5 45 83-131 3-50 (60)
125 2yql_A PHD finger protein 21A; 50.9 5.4 0.00018 23.2 1.0 45 83-131 7-54 (56)
126 2xqn_T Testin, TESS; metal-bin 50.1 5.6 0.00019 26.8 1.1 60 84-149 29-88 (126)
127 3ask_A E3 ubiquitin-protein li 49.7 3.7 0.00013 31.4 0.2 46 86-132 175-224 (226)
128 1xwh_A Autoimmune regulator; P 49.4 5.5 0.00019 24.1 0.9 46 83-132 6-54 (66)
129 3mjh_B Early endosome antigen 48.6 2.2 7.7E-05 22.7 -0.9 15 86-100 6-20 (34)
130 3asl_A E3 ubiquitin-protein li 47.5 5.6 0.00019 24.5 0.7 45 87-132 20-68 (70)
131 4gne_A Histone-lysine N-methyl 46.9 17 0.00057 24.4 3.1 47 83-135 13-64 (107)
132 1wd2_A Ariadne-1 protein homol 45.2 7 0.00024 23.3 0.9 18 119-136 1-18 (60)
133 2e6s_A E3 ubiquitin-protein li 45.2 4.9 0.00017 25.3 0.2 46 86-132 27-76 (77)
134 2zet_C Melanophilin; complex, 44.8 11 0.00039 26.8 2.1 34 83-116 66-100 (153)
135 1weu_A Inhibitor of growth fam 44.0 16 0.00055 23.7 2.6 46 83-133 34-85 (91)
136 2jne_A Hypothetical protein YF 42.8 8.8 0.0003 25.4 1.1 39 86-134 33-71 (101)
137 1wen_A Inhibitor of growth fam 42.3 20 0.00069 21.9 2.8 46 83-133 14-65 (71)
138 2o35_A Hypothetical protein DU 41.9 11 0.00038 25.0 1.5 12 111-122 43-54 (105)
139 3fyb_A Protein of unknown func 41.7 11 0.00039 24.9 1.5 11 111-121 42-52 (104)
140 2cup_A Skeletal muscle LIM-pro 41.6 5.1 0.00018 25.8 -0.2 49 84-138 32-80 (101)
141 2jrp_A Putative cytoplasmic pr 41.2 12 0.00042 23.8 1.6 13 86-98 3-15 (81)
142 2e6r_A Jumonji/ARID domain-con 40.5 11 0.00037 24.4 1.3 48 83-131 14-64 (92)
143 1wev_A Riken cDNA 1110020M19; 39.1 14 0.00047 23.7 1.6 49 84-132 15-71 (88)
144 2cu8_A Cysteine-rich protein 2 38.8 19 0.00066 21.7 2.3 41 85-137 9-49 (76)
145 3a1b_A DNA (cytosine-5)-methyl 34.1 42 0.0014 24.1 3.7 46 83-132 77-133 (159)
146 2co8_A NEDD9 interacting prote 34.0 32 0.0011 21.1 2.8 43 84-138 14-56 (82)
147 2d8y_A Eplin protein; LIM doma 31.5 45 0.0015 20.8 3.2 40 85-136 15-54 (91)
148 2rgt_A Fusion of LIM/homeobox 30.6 28 0.00097 24.6 2.4 61 84-151 32-92 (169)
149 2xjy_A Rhombotin-2; oncoprotei 30.1 11 0.00036 25.5 -0.1 65 83-151 27-93 (131)
150 3shb_A E3 ubiquitin-protein li 29.9 9.1 0.00031 24.0 -0.4 45 87-132 28-76 (77)
151 2ct7_A Ring finger protein 31; 29.6 4 0.00014 26.1 -2.2 18 102-119 44-61 (86)
152 2jtn_A LIM domain-binding prot 29.5 20 0.00068 25.8 1.4 61 84-151 86-146 (182)
153 1iml_A CRIP, cysteine rich int 29.5 29 0.00099 20.8 2.0 41 85-131 27-68 (76)
154 3kqi_A GRC5, PHD finger protei 29.1 52 0.0018 20.0 3.1 48 85-133 10-61 (75)
155 1wem_A Death associated transc 28.9 61 0.0021 19.7 3.4 47 85-133 16-70 (76)
156 1rut_X Flinc4, fusion protein 28.6 9.4 0.00032 27.7 -0.6 64 84-150 31-95 (188)
157 1nyp_A Pinch protein; LIM doma 27.8 42 0.0014 19.4 2.4 39 85-136 5-43 (66)
158 2pv0_B DNA (cytosine-5)-methyl 26.9 47 0.0016 27.3 3.3 46 84-133 92-148 (386)
159 2a20_A Regulating synaptic mem 26.8 35 0.0012 20.4 1.8 18 81-98 5-23 (62)
160 2dj7_A Actin-binding LIM prote 26.7 31 0.001 21.2 1.7 40 84-135 14-53 (80)
161 2kdx_A HYPA, hydrogenase/ureas 26.3 36 0.0012 22.8 2.1 24 103-133 75-99 (119)
162 2jmo_A Parkin; IBR, E3 ligase, 25.9 4.6 0.00016 25.5 -2.4 14 106-119 55-68 (80)
163 2kpi_A Uncharacterized protein 25.7 46 0.0016 19.4 2.3 14 84-97 9-22 (56)
164 1wyh_A SLIM 2, skeletal muscle 25.6 59 0.002 19.0 2.9 40 85-136 5-45 (72)
165 2jvx_A NF-kappa-B essential mo 24.6 18 0.00062 18.2 0.2 12 124-135 3-14 (28)
166 2d8v_A Zinc finger FYVE domain 24.2 47 0.0016 20.3 2.1 32 83-119 6-38 (67)
167 1wee_A PHD finger family prote 23.4 25 0.00085 21.3 0.8 48 84-132 15-65 (72)
168 1m3v_A FLIN4, fusion of the LI 22.7 73 0.0025 21.0 3.2 51 85-139 32-84 (122)
169 3f6q_B LIM and senescent cell 22.5 45 0.0015 19.4 1.8 42 84-136 10-51 (72)
170 3pwf_A Rubrerythrin; non heme 21.9 54 0.0019 23.5 2.5 25 101-133 138-162 (170)
171 2lq6_A Bromodomain-containing 21.6 71 0.0024 20.2 2.7 34 85-119 17-51 (87)
172 1x4k_A Skeletal muscle LIM-pro 20.8 66 0.0023 18.7 2.4 40 86-137 6-46 (72)
173 2cor_A Pinch protein; LIM doma 20.8 1.1E+02 0.0039 18.3 3.6 40 85-137 15-54 (79)
174 1x63_A Skeletal muscle LIM-pro 20.7 89 0.003 18.7 3.1 42 85-137 15-56 (82)
175 2d8z_A Four and A half LIM dom 20.1 81 0.0028 18.2 2.7 37 86-135 6-42 (70)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.64 E-value=7.1e-16 Score=104.20 Aligned_cols=73 Identities=32% Similarity=0.689 Sum_probs=59.4
Q ss_pred CCCcCHHHHHhhCCccccccCC---CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCC
Q 030807 61 PLSVSALLIREILPVVKFSELV---DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIP 136 (171)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 136 (171)
..+.+...+ +.+|...+.... .++..|+||++.+..+..+..++ |+|.||..||.+|++ .+.+||+||.++.+
T Consensus 14 ~~~~s~~~i-~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 14 NPPASKESI-DALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQ-KSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCCHHHH-HTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHT-TTCBCTTTCCBSSC
T ss_pred CCCCCHHHH-HhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHH-cCCcCcCcCccCCC
Confidence 455666555 458888776543 46678999999999988888887 999999999999998 68899999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=99.41 Aligned_cols=64 Identities=36% Similarity=0.884 Sum_probs=53.3
Q ss_pred hCCccccccCC--CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCC
Q 030807 72 ILPVVKFSELV--DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPD 137 (171)
Q Consensus 72 ~~~~~~~~~~~--~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 137 (171)
.+|..++.... .++..|+||++.+..+..+..++ |+|.||..||.+|++ .+..||+||.++.+.
T Consensus 8 ~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 8 QLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLK-ANRTCPICRADSGPS 73 (75)
T ss_dssp SCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHH-HCSSCTTTCCCCCCC
T ss_pred hCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHH-cCCcCcCcCCcCCCC
Confidence 46666665432 56778999999999998888886 999999999999998 578999999988653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.54 E-value=3.5e-15 Score=91.15 Aligned_cols=52 Identities=46% Similarity=0.997 Sum_probs=45.8
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFI 135 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~ 135 (171)
+++..|+||++.+..++....++.|+|.||..|+.+|++ .+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH-cCCcCcCCCCEeE
Confidence 456789999999999887777867999999999999998 5889999998764
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=1.9e-14 Score=94.07 Aligned_cols=56 Identities=27% Similarity=0.847 Sum_probs=48.5
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCchh
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQ 140 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~ 140 (171)
..+..|+||++.+..+..+..++ |+|.||..||.+|++ .+..||+||.++...++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHT-TTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHH-cCCcCcCcCCccCCcccC
Confidence 55678999999999988887786 999999999999998 578999999998765543
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.4e-14 Score=92.63 Aligned_cols=52 Identities=42% Similarity=1.034 Sum_probs=45.9
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIP 136 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 136 (171)
..+..|+||++.+..+..+..++ |+|.||..||.+|++ .+..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~-~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLE-VRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHH-HCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHH-cCCcCCCcCccccc
Confidence 45678999999999988888886 999999999999998 46799999998753
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=4.4e-14 Score=90.19 Aligned_cols=52 Identities=40% Similarity=1.082 Sum_probs=45.1
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIP 136 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 136 (171)
..+..|+||++.+..+..+..++ |+|.||..||.+|++ .+..||+||.++..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLI-TNKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHH-HCSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHH-cCCCCcCcCccccC
Confidence 55678999999998877777786 999999999999998 47789999998754
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.4e-14 Score=94.66 Aligned_cols=53 Identities=28% Similarity=0.821 Sum_probs=42.0
Q ss_pred Cccccccccccccc-----------cceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCC
Q 030807 84 PPDSCAVCLYEFEE-----------QDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPD 137 (171)
Q Consensus 84 ~~~~C~ICl~~~~~-----------~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 137 (171)
++..|+||++++.. ++.+..+++|+|.||..||.+|++ .+.+||+||.++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcchh
Confidence 45668888887754 455556667999999999999998 578999999987543
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.41 E-value=9.9e-14 Score=88.81 Aligned_cols=55 Identities=27% Similarity=0.626 Sum_probs=45.0
Q ss_pred CCcccccccccccccc----ceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCch
Q 030807 83 DPPDSCAVCLYEFEEQ----DEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDM 139 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 139 (171)
.++..|+||++.+..+ .....+ +|||.||..||.+|++ .+..||+||.++..+++
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHH-HCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHH-cCCCCCCCCCccChhhe
Confidence 5577899999999775 333445 5999999999999998 57899999999876654
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.41 E-value=1.1e-13 Score=84.34 Aligned_cols=50 Identities=28% Similarity=0.717 Sum_probs=41.1
Q ss_pred Cccccccccccccccce-eeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCC
Q 030807 84 PPDSCAVCLYEFEEQDE-IRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFI 135 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~-~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~ 135 (171)
++..|+||++.+.++.. ...+ +|+|.||..||.+|++. +..||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVL-PCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEEC-TTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEec-CCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 46789999999976543 4445 59999999999999984 689999998864
No 10
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.38 E-value=2.5e-13 Score=84.99 Aligned_cols=54 Identities=28% Similarity=0.631 Sum_probs=43.9
Q ss_pred Ccccccccccccccc----ceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCch
Q 030807 84 PPDSCAVCLYEFEEQ----DEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDM 139 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 139 (171)
++..|+||++.+..+ .....+ +|||.||..|+.+|++ .+..||+||.++...++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHH-HCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHH-cCCCCCCCCccCCccce
Confidence 467899999999875 223345 5999999999999998 48899999999876654
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.2e-13 Score=85.20 Aligned_cols=52 Identities=29% Similarity=0.645 Sum_probs=42.5
Q ss_pred CCccccccccccccccc----eeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQD----EIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIP 136 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~----~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 136 (171)
.+...|+||++.+..+. .+..+ +|+|.||..||.+|++ .+..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLK-NANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHH-HCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHH-cCCCCCCCCCccCc
Confidence 56778999999998752 22345 5999999999999998 48899999998753
No 12
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=6.4e-13 Score=84.09 Aligned_cols=52 Identities=17% Similarity=0.549 Sum_probs=44.4
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCc
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDD 138 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 138 (171)
.+...|+||++.+.++..+ +|||.||..||.+|++..+..||+||.++..++
T Consensus 13 ~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQT----ECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSCCCC----SSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcCeeEC----CCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 5678899999999887664 599999999999999646778999999987654
No 13
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.37 E-value=4.7e-13 Score=93.46 Aligned_cols=52 Identities=31% Similarity=0.703 Sum_probs=40.5
Q ss_pred Cccccccccccccccc--------------eeeecCCCCCcccHHHHHHHHh----cCCCCCCccCCCCC
Q 030807 84 PPDSCAVCLYEFEEQD--------------EIRRLTNCRHIFHRGCLDRWMA----YDQKTCPLCRTPFI 135 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~--------------~~~~l~~C~H~Fh~~Ci~~wl~----~~~~~CP~Cr~~~~ 135 (171)
.+..|+||++.|..+. .+..+.+|+|.||..||.+|+. ..+..||+||..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 4568999999997653 2222335999999999999994 24678999999875
No 14
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.35 E-value=7.2e-13 Score=83.59 Aligned_cols=57 Identities=19% Similarity=0.526 Sum_probs=45.3
Q ss_pred Cccccccccc-cccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCchh
Q 030807 84 PPDSCAVCLY-EFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQ 140 (171)
Q Consensus 84 ~~~~C~ICl~-~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~ 140 (171)
++..|+||++ .+.++.....+.+|||.||..||.+|+..++..||+||.++..+++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 3567999999 78887643333359999999999999875677899999998766653
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.35 E-value=5.1e-13 Score=92.69 Aligned_cols=51 Identities=27% Similarity=0.651 Sum_probs=41.6
Q ss_pred CCccccccccccccccc---------------eeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQD---------------EIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFI 135 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~ 135 (171)
.++..|+||++.|..+. .+..+ +|+|.||..||.+|+. .+.+||+||.++.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~-~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLK-TRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEE-TTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeec-ccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence 46788999999987651 23345 5999999999999998 5899999999863
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=84.03 Aligned_cols=54 Identities=22% Similarity=0.492 Sum_probs=44.6
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCchh
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQ 140 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~ 140 (171)
.+...|+||++.+.++..+ . +|+|.||..||..|++ .+..||+||.++...+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~--~-~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTI--T-ECLHTFCKSCIVRHFY-YSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSSCEEC--S-SSCCEECHHHHHHHHH-HCSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHCcCEE--C-CCCCHHHHHHHHHHHH-cCCcCCCcCcccCccccc
Confidence 5677899999999886443 2 5999999999999998 488999999998766543
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.4e-12 Score=82.78 Aligned_cols=53 Identities=25% Similarity=0.558 Sum_probs=43.5
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhc--CCCCCCccCCCCCCCch
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY--DQKTCPLCRTPFIPDDM 139 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~--~~~~CP~Cr~~~~~~~~ 139 (171)
.++..|+||++.+.++..+ +|||.||..||..|++. ....||+||.++..+++
T Consensus 18 ~~~~~C~IC~~~~~~~~~~----~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTI----DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSSEEEC----TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEc----CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 5678899999999876544 59999999999999962 45689999999876543
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=6.4e-13 Score=85.34 Aligned_cols=50 Identities=28% Similarity=0.536 Sum_probs=42.0
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPD 137 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 137 (171)
.++..|+||++.+.++..+ +|+|.||..||..|+. .+..||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~----~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSL----PCKHVFCYLCVKGASW-LGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEE----TTTEEEEHHHHHHCTT-CSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCCCEEc----cCCCHHHHHHHHHHHH-CCCcCcCcCchhCHh
Confidence 4567899999999876444 5999999999999998 578999999987643
No 19
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.29 E-value=2.1e-12 Score=84.17 Aligned_cols=54 Identities=15% Similarity=0.438 Sum_probs=45.3
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCchh
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQ 140 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~ 140 (171)
.++..|+||++.+.++..+ +|||.||..||.+|+..++..||+||.++...++.
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~----~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~ 59 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIV----STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT 59 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEE----TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE
T ss_pred cccCCCCCccccccCCEEc----CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCc
Confidence 4577899999999987554 59999999999999985588999999988755543
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=6.8e-12 Score=83.32 Aligned_cols=56 Identities=25% Similarity=0.596 Sum_probs=44.7
Q ss_pred CCccccccccccccccce-eeecCCCCCcccHHHHHHHHhcC--CCCCCccCCCCCCCch
Q 030807 83 DPPDSCAVCLYEFEEQDE-IRRLTNCRHIFHRGCLDRWMAYD--QKTCPLCRTPFIPDDM 139 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~-~~~l~~C~H~Fh~~Ci~~wl~~~--~~~CP~Cr~~~~~~~~ 139 (171)
.+...|+||++.+..... ...+ +|||.||..|+..|++.. ...||+||.++...++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred cCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 567789999999988554 3445 599999999999999843 4789999998765543
No 21
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.27 E-value=1.5e-12 Score=89.16 Aligned_cols=54 Identities=20% Similarity=0.663 Sum_probs=44.0
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCch
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDM 139 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 139 (171)
.+...|+||++.+..+..+ + +|||.||..||..|+......||+||.++...++
T Consensus 20 ~~~~~C~IC~~~~~~p~~~--~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLC--P-HCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HHHTBCTTTCSBCSSEEEC--T-TTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCccCCccccCcccc--C-CCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 4567899999999876441 3 6999999999999998544799999999876554
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.26 E-value=2.2e-12 Score=81.90 Aligned_cols=49 Identities=33% Similarity=0.845 Sum_probs=40.7
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFI 135 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~ 135 (171)
..+..|+||++.+.++. ..+ +|+|.||..|+.+|++ .+..||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~--~~~-~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYS--MAL-PCLHAFCYVCITRWIR-QNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCE--EET-TTTEEESTTHHHHHHH-HSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCc--Eec-CCCCeeHHHHHHHHHh-CcCcCcCCChhhH
Confidence 34678999999987653 345 4999999999999998 5789999999875
No 23
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.6e-12 Score=83.51 Aligned_cols=53 Identities=28% Similarity=0.828 Sum_probs=43.1
Q ss_pred CCccccccccccccccceeeecCCCC-----CcccHHHHHHHHhcC-CCCCCccCCCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCR-----HIFHRGCLDRWMAYD-QKTCPLCRTPFIPD 137 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~-----H~Fh~~Ci~~wl~~~-~~~CP~Cr~~~~~~ 137 (171)
.++..|.||++++..++.+ .+| |+ |.||..||++|+... ..+||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 4567899999999877666 465 96 999999999999753 35899999988644
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.25 E-value=5.2e-12 Score=81.76 Aligned_cols=51 Identities=18% Similarity=0.431 Sum_probs=41.6
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcC-CCCCCccCCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYD-QKTCPLCRTPFIP 136 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~-~~~CP~Cr~~~~~ 136 (171)
.++..|+||++.+..+..+ +.|+|.||..||..|++.. ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~---~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVI---PCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTCEEC---SSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCCeEc---CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 5677899999999987654 2399999999999999742 3689999998643
No 25
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.3e-12 Score=83.52 Aligned_cols=50 Identities=26% Similarity=0.819 Sum_probs=42.1
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCc
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDD 138 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 138 (171)
.++..|+||++.+.. ..+ +|+|.||..||.+|++ .+..||+||.++...+
T Consensus 13 ~~~~~C~IC~~~~~~----~~~-~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LIL-PCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEE-TTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----ccc-CCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 456789999999877 345 4999999999999998 6899999999876544
No 26
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.24 E-value=8e-13 Score=93.17 Aligned_cols=52 Identities=27% Similarity=0.610 Sum_probs=1.7
Q ss_pred CCccccccccccccccc--------------eeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQD--------------EIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFI 135 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~--------------~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~ 135 (171)
.+++.|+||+++|..+. ....+++|+|.||..||.+|++ .+.+||+||.++.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 111 (117)
T ss_dssp CCC----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-cCCcCCCCCCeee
Confidence 45688999999997532 1223335999999999999998 5889999999864
No 27
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.24 E-value=5.5e-12 Score=89.42 Aligned_cols=50 Identities=24% Similarity=0.446 Sum_probs=42.5
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIP 136 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 136 (171)
.++..|+||++.+..+..+ +|||.||..||..|+..+...||+||.++..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITT----VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEEC----TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEe----eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3456799999999987554 5999999999999998556699999999865
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.23 E-value=5.1e-12 Score=91.31 Aligned_cols=49 Identities=31% Similarity=0.760 Sum_probs=41.7
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCC
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPD 137 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 137 (171)
++..|+||++.+..+..+ +|||.||..||..|+. .+..||+||.++...
T Consensus 52 ~~~~C~iC~~~~~~~~~~----~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTL----NCAHSFCSYCINEWMK-RKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSEEEE----TTSCEEEHHHHHHHTT-TCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCceEC----CCCCCccHHHHHHHHH-cCCcCCCCCCcCCCC
Confidence 456799999999887443 5999999999999998 688999999998644
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.23 E-value=3.7e-12 Score=82.99 Aligned_cols=54 Identities=22% Similarity=0.595 Sum_probs=44.6
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcC------CCCCCccCCCCCCCchh
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYD------QKTCPLCRTPFIPDDMQ 140 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~------~~~CP~Cr~~~~~~~~~ 140 (171)
.++..|+||++.+.++..+ +|||.||..||..|++.. ...||+||.++...++.
T Consensus 10 ~~~~~C~IC~~~~~~p~~l----~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 69 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSL----DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ 69 (79)
T ss_dssp CCCCEETTTTEECSSCCCC----SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGG
T ss_pred ccCCCCcCCCcccCCeeEC----CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCC
Confidence 5678899999999887554 599999999999999742 67899999998765543
No 30
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=7.4e-12 Score=82.25 Aligned_cols=48 Identities=25% Similarity=0.584 Sum_probs=41.2
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFI 135 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~ 135 (171)
.....|+||++.+..+.. + +|+|.||..||.+|++ ....||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~-~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVV---T-KCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEEE---C-TTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCeeE---c-cCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence 456789999999988643 4 5999999999999998 5889999999875
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.19 E-value=1.6e-11 Score=80.81 Aligned_cols=53 Identities=26% Similarity=0.710 Sum_probs=43.8
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcC-----CCCCCccCCCCCCCch
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYD-----QKTCPLCRTPFIPDDM 139 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~-----~~~CP~Cr~~~~~~~~ 139 (171)
.++..|+||++.+..+.. + +|+|.||..|+..|+... ...||.||.++..+++
T Consensus 17 ~~~~~C~IC~~~~~~p~~---~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVS---A-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp CTTTSCTTTCSCCSSCEE---C-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred ccCCCCcCCChhhCccee---C-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 556789999999988753 3 599999999999999752 6789999999876544
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.2e-11 Score=76.15 Aligned_cols=45 Identities=27% Similarity=0.618 Sum_probs=37.7
Q ss_pred CCCccccccccccccccceeeecCCCCCcccHHHHHHHHhc--CCCCCCcc
Q 030807 82 VDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY--DQKTCPLC 130 (171)
Q Consensus 82 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~--~~~~CP~C 130 (171)
..++..|+||++.+.++..+ +|||.||..||.+|++. ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTI----DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEEC----TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEe----CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35678899999999987554 59999999999999974 45689998
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.18 E-value=9.2e-12 Score=84.84 Aligned_cols=53 Identities=23% Similarity=0.580 Sum_probs=43.3
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCch
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDM 139 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 139 (171)
.+...|+||++.+..+..+ . +|||.||..||..|+. .+..||+||.++...++
T Consensus 20 ~~~~~C~IC~~~~~~p~~~--~-~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~l 72 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMII--P-QCSHNYCSLCIRKFLS-YKTQCPTCCVTVTEPDL 72 (99)
T ss_dssp HHHTBCTTTCSBCSSEEEC--T-TTCCEEEHHHHHHHHT-TCCBCTTTCCBCCGGGC
T ss_pred CCCCCcccCChhhCCcCEE--C-CCCCHhhHHHHHHHHH-CCCCCCCCCCcCChhhC
Confidence 3457899999999886433 2 5999999999999998 57899999998875443
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.18 E-value=1.4e-11 Score=87.51 Aligned_cols=55 Identities=27% Similarity=0.626 Sum_probs=44.7
Q ss_pred CCcccccccccccccc----ceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCch
Q 030807 83 DPPDSCAVCLYEFEEQ----DEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDM 139 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 139 (171)
.++..|+||++.+.++ .....+ +|||.||..||.+|++ .+..||+||..+....+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHT-TCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHH-hCCCCCCCCCcCccccc
Confidence 3567899999999876 233445 5999999999999998 57899999999876554
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.18 E-value=3e-11 Score=81.08 Aligned_cols=48 Identities=19% Similarity=0.439 Sum_probs=41.1
Q ss_pred CCccccccccccccccceeeecCC-CCCcccHHHHHHHHhcC-CCCCCccCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTN-CRHIFHRGCLDRWMAYD-QKTCPLCRTPF 134 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~-C~H~Fh~~Ci~~wl~~~-~~~CP~Cr~~~ 134 (171)
.++..|+||++.+.++..+ + |||.||..||..|+... ...||+||.++
T Consensus 11 ~~~~~C~IC~~~~~~p~~~----~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVI----PCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSSCEEC----TTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcCceEC----CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 5678899999999988654 6 99999999999999643 46899999986
No 36
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2e-11 Score=80.26 Aligned_cols=53 Identities=25% Similarity=0.730 Sum_probs=43.8
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhc-----CCCCCCccCCCCCCCch
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY-----DQKTCPLCRTPFIPDDM 139 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~-----~~~~CP~Cr~~~~~~~~ 139 (171)
.+...|+||++.+..+..+ +|+|.||..|+..|+.. +...||.||.++...++
T Consensus 17 ~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSL----DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCC----SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred cCCCCCCCCCcccCCceeC----CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 5567899999999887544 59999999999999974 26789999999876544
No 37
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.16 E-value=2.4e-11 Score=89.13 Aligned_cols=50 Identities=22% Similarity=0.445 Sum_probs=42.7
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCC
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPD 137 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 137 (171)
+...|+||++.+..+..+ +|||.||..||..|+..+...||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~pv~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTT----ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEEC----TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEc----CCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 456899999999887654 59999999999999985556899999998765
No 38
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=3.8e-11 Score=77.84 Aligned_cols=50 Identities=18% Similarity=0.537 Sum_probs=40.7
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcC-CCCCCccCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYD-QKTCPLCRTPFI 135 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~-~~~CP~Cr~~~~ 135 (171)
+....|+||.+.+..++.- +.|+|.||..||.+|++.+ +.+||+||.++.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C---~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEEC---SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCcc---CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4567899999999876533 2699999999999999742 278999998864
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=4.3e-11 Score=73.32 Aligned_cols=44 Identities=36% Similarity=0.865 Sum_probs=36.9
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhc--CCCCCCcc
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY--DQKTCPLC 130 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~--~~~~CP~C 130 (171)
.+...|+||++.+.++..+ +|+|.||..||.+|+.. .+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVII----ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCC----SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeC----CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 5567899999999887543 59999999999999753 56789998
No 40
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.13 E-value=2.9e-11 Score=85.05 Aligned_cols=56 Identities=18% Similarity=0.531 Sum_probs=45.7
Q ss_pred cCCCCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCch
Q 030807 80 ELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDM 139 (171)
Q Consensus 80 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 139 (171)
+...+...|+||++.+..+..+ +|||.||..||..|+..+...||+||.++...++
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 68 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQT----PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred cCCCCCCCCCcCChhhcCeEEC----CcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhc
Confidence 3446678999999999887443 5999999999999998555599999999876543
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.13 E-value=2.6e-11 Score=83.88 Aligned_cols=51 Identities=27% Similarity=0.699 Sum_probs=42.6
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPD 137 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 137 (171)
.++..|+||++.+.++..+ . +|||.||..||..|+. .+..||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~--~-~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTI--I-ECLHSFCKTCIVRYLE-TSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEE--T-TTCCEEEHHHHHHHHT-SCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCcCEe--C-CCCChhhHHHHHHHHH-hCCcCcCCCcccccc
Confidence 4567899999999876433 2 5999999999999998 578999999998754
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.11 E-value=8.4e-11 Score=77.05 Aligned_cols=56 Identities=27% Similarity=0.600 Sum_probs=43.3
Q ss_pred CCccccccccccccccc-eeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCch
Q 030807 83 DPPDSCAVCLYEFEEQD-EIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDM 139 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~-~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 139 (171)
+++..|+||++.+...+ .+..+ +|||.||..|+..++......||.||.++....+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 56778999999886533 22223 3999999999999986567889999999875543
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.10 E-value=3.2e-11 Score=89.44 Aligned_cols=50 Identities=24% Similarity=0.583 Sum_probs=41.7
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCC
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIP 136 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 136 (171)
+...|+||++.+.++..+ + +|||.||..||..|+..++..||+||.++..
T Consensus 53 ~~~~C~IC~~~~~~p~~~--~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTT--K-ECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEEE--T-TTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCEe--C-CCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 456899999999886333 3 5999999999999998558889999999854
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.09 E-value=1.4e-11 Score=86.20 Aligned_cols=49 Identities=20% Similarity=0.547 Sum_probs=42.1
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFI 135 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~ 135 (171)
.++..|+||++.+..+..+ +|||.||..||..|+..+...||+||.++.
T Consensus 13 ~~~~~C~iC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTL----PCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSCEEC----TTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCceeEc----CCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4567899999999887555 599999999999999755789999999875
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.08 E-value=4.1e-11 Score=83.86 Aligned_cols=53 Identities=32% Similarity=0.702 Sum_probs=44.2
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCch
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDM 139 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 139 (171)
.++..|+||++.+.++..+ +|||.||..||..|+......||+||.++...++
T Consensus 21 ~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 21 VKSISCQICEHILADPVET----SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHHTBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred cCCCCCCCCCcHhcCcEEc----CCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 3467899999999887554 5999999999999998557789999999876553
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=5.8e-11 Score=82.27 Aligned_cols=52 Identities=25% Similarity=0.645 Sum_probs=42.0
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHhcCC--CCCCccCCCCCCCch
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQ--KTCPLCRTPFIPDDM 139 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~--~~CP~Cr~~~~~~~~ 139 (171)
+...|+||++.+..+..+ +|||.||..||..|+.... ..||+||.++...++
T Consensus 20 ~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLELIKEPVST----KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCCCCSSCCBC----TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCCcccChhhcCeEEC----CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 456799999999887554 5999999999999997422 489999998876543
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.06 E-value=4.4e-11 Score=84.84 Aligned_cols=55 Identities=27% Similarity=0.610 Sum_probs=44.5
Q ss_pred CCccccccccccccccc----eeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCch
Q 030807 83 DPPDSCAVCLYEFEEQD----EIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDM 139 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~----~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 139 (171)
.+...|+||++.+..+. ....+ +|||.||..||.+|++ .+.+||+||.++..+++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHH-HCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHH-cCCCCCCCCCcCChhcc
Confidence 56778999999998751 22344 5999999999999998 58899999999876654
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.00 E-value=1.5e-10 Score=76.91 Aligned_cols=54 Identities=9% Similarity=0.074 Sum_probs=46.3
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCchhh
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQD 141 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~ 141 (171)
.+...|+||++.+.++..+ +|||.|++.||..|+. ++..||.|+.++...++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~----~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRL----PSGTVMDRSIILRHLL-NSPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp CTTTBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHH-HCSBCTTTCCBCCGGGCEE
T ss_pred chheECcccCchhcCCeEC----CCCCEECHHHHHHHHh-cCCCCCCCcCCCChHhcch
Confidence 4578899999999998665 5999999999999998 5789999999987665544
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.00 E-value=9.5e-11 Score=85.11 Aligned_cols=52 Identities=17% Similarity=0.406 Sum_probs=43.4
Q ss_pred cCCCCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCC
Q 030807 80 ELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFI 135 (171)
Q Consensus 80 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~ 135 (171)
+...++..|+||++.+..+..+ +|||.||..||.+|+..+...||+||.++.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~----~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQA----QCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCcEEC----CCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 3346778999999999988543 599999999999999855568999999764
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.00 E-value=2.4e-10 Score=78.29 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=48.6
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCchhhHHH
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQDSFN 144 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~~ 144 (171)
.+...|+||++.+.+|..+ +|||.|+..||..|+. .+..||.||.++...++.....
T Consensus 27 p~~~~CpI~~~~m~dPV~~----~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~ 83 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRL----PSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPE 83 (100)
T ss_dssp STTTBCTTTCSBCSSEEEE----TTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHH
T ss_pred cHhhCCcCccCcccCCeEC----CCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHH
Confidence 4577899999999999776 6999999999999998 6889999999998776655433
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.97 E-value=3.6e-10 Score=77.16 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=47.1
Q ss_pred CCccccccccccccccceeeecCCCC-CcccHHHHHHHHhcCCCCCCccCCCCCCCchhhH
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCR-HIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQDS 142 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~-H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~ 142 (171)
.++..|+||++.+.++..+ +|| |.|++.||..|+. .+..||+||.++...++...
T Consensus 20 p~~~~CpI~~~~m~dPV~~----~cG~htf~r~cI~~~l~-~~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVL----PSSRVTVDRSTIARHLL-SDQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp CTTTBCTTTCSBCSSEEEC----TTTCCEEEHHHHHHHTT-TSCBCTTTCSBCCTTTSEEC
T ss_pred cHhcCCcCccccccCCeEC----CCCCeEECHHHHHHHHH-hCCCCCCCCCCCChhhceEc
Confidence 4577899999999999766 699 9999999999998 57899999999987665543
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.89 E-value=8e-10 Score=92.11 Aligned_cols=52 Identities=21% Similarity=0.610 Sum_probs=42.3
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCc
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDD 138 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 138 (171)
.....|+||++.+..+.. + +|||.||..|+..|+...+..||+||.++....
T Consensus 330 ~~~~~C~ICle~~~~pv~---l-pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKI---E-PCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp TSSSBCTTTSSSBCCEEE---E-TTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCCCccCcCCCCeEE---e-CCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 344789999999877543 3 599999999999999755789999999886543
No 53
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.88 E-value=8.7e-10 Score=81.97 Aligned_cols=56 Identities=18% Similarity=0.531 Sum_probs=46.1
Q ss_pred cCCCCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCch
Q 030807 80 ELVDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDM 139 (171)
Q Consensus 80 ~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 139 (171)
+...+...|+||++.+.++..+ +|||.||..||.+|+..+...||+||.++...++
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 68 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQT----PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred cCCCCCCCCCCCChhhcCcEEC----CCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhh
Confidence 3446778999999999988543 5999999999999997555699999999876543
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=4e-10 Score=79.03 Aligned_cols=51 Identities=27% Similarity=0.648 Sum_probs=41.5
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCch
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDM 139 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 139 (171)
.+...|+||++.+..+..+. +|||.||..||..|+. ..||+||.++...++
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~---~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~ 70 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLG---GCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDL 70 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCC---SSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSC
T ss_pred hhCCCCCCCChHhhCccEeC---CCCCHHHHHHHHHHhc---CCCcCCCCcCccccc
Confidence 34678999999998875442 5999999999999985 789999998865543
No 55
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=1.1e-09 Score=74.00 Aligned_cols=58 Identities=16% Similarity=0.360 Sum_probs=44.8
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcC-----CCCCCc--cCCC-CCCCchhhHH
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYD-----QKTCPL--CRTP-FIPDDMQDSF 143 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~-----~~~CP~--Cr~~-~~~~~~~~~~ 143 (171)
..+..|+||++.|.+|..+ +.|||.|+..||..|+..+ ...||+ |+.. +...++....
T Consensus 5 ~~~~~CPI~~~~~~dPV~~---~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~ 70 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKN---KVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDE 70 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEE---SSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECH
T ss_pred CcEeECcCcCchhcCCEEc---CCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCH
Confidence 4567899999999998665 1499999999999999742 358999 9876 6555554433
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.86 E-value=2.2e-09 Score=84.91 Aligned_cols=56 Identities=9% Similarity=0.099 Sum_probs=46.6
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCchhhH
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQDS 142 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~ 142 (171)
.....|+||++.+.+|..+ +|||.||..||..|+..+...||+||.++...++...
T Consensus 206 ~~~~~c~i~~~~~~dPv~~----~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n 261 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCIT----PSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN 261 (281)
T ss_dssp CSTTBCTTTCSBCSSEEEC----SSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC
T ss_pred CcccCCcCcCCHhcCCeEC----CCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCccc
Confidence 4567899999999999765 6999999999999998555669999999876665443
No 57
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=6.9e-10 Score=67.90 Aligned_cols=46 Identities=26% Similarity=0.602 Sum_probs=37.8
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIP 136 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 136 (171)
.+...|+||++.+..+..+ +|+|.||..|+.. ....||+||.++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l----~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLL----PCLHTLCSGCLEA----SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCS----TTSCCSBTTTCSS----SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEc----CCCCcccHHHHcc----CCCCCCcCCcEeec
Confidence 4567899999999987444 5999999999977 36789999998753
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.84 E-value=1.6e-09 Score=68.17 Aligned_cols=49 Identities=20% Similarity=0.480 Sum_probs=39.1
Q ss_pred CccccccccccccccceeeecCCCCCc-ccHHHHHHHHhcCCCCCCccCCCCC
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHI-FHRGCLDRWMAYDQKTCPLCRTPFI 135 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~~CP~Cr~~~~ 135 (171)
++..|+||++...+...+ .+| |||. ||..|+..|.+ .+..||+||.++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~-~~p-CgH~~~C~~C~~~~~~-~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIV-HGK-TGHLMACFTCAKKLKK-RNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEE-ETT-EEEEEECHHHHHHHHH-TTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEE-CCC-CCChhhHHHHHHHHHH-cCCcCCCcCcchh
Confidence 456799999987665321 235 9999 89999999998 5788999999874
No 59
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.80 E-value=1.9e-09 Score=72.70 Aligned_cols=57 Identities=21% Similarity=0.572 Sum_probs=44.4
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHhc----C---CCCCCc--cCCC--CCCCchhh
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY----D---QKTCPL--CRTP--FIPDDMQD 141 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~----~---~~~CP~--Cr~~--~~~~~~~~ 141 (171)
+...|+||++++..++.+... +|+|.||..|+..++.. + ...||. |+.. +.+..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~-~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ 71 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIA-QCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIEC 71 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEET-TTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHH
T ss_pred CCcCCcccCcccccccceEcC-CCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHH
Confidence 456799999999888776544 49999999999999953 1 247999 9998 66555544
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.77 E-value=3.3e-09 Score=66.45 Aligned_cols=49 Identities=18% Similarity=0.419 Sum_probs=38.8
Q ss_pred CccccccccccccccceeeecCCCCCc-ccHHHHHHHHhcCCCCCCccCCCCC
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHI-FHRGCLDRWMAYDQKTCPLCRTPFI 135 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~~CP~Cr~~~~ 135 (171)
.+..|+||++...+...+ .+| |||. ||..|+..|.+ .+..||+||.++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~-~~p-CgH~~~C~~C~~~~~~-~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNII-HGR-TGHLVTCFHCARRLKK-AGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEE-ETT-EEEEEECHHHHHHHHH-TTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEE-ecC-CCCHhHHHHHHHHHHH-hCCcCCCcCchhh
Confidence 456799999986654322 235 9998 99999999997 5689999999874
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.75 E-value=1.9e-09 Score=69.63 Aligned_cols=43 Identities=21% Similarity=0.557 Sum_probs=36.1
Q ss_pred CccccccccccccccceeeecCCCCCc-ccHHHHHHHHhcCCCCCCccCCCCC
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHI-FHRGCLDRWMAYDQKTCPLCRTPFI 135 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~~CP~Cr~~~~ 135 (171)
++..|+||++.+.++..+ +|||. ||..|+..| ..||+||.++.
T Consensus 23 ~~~~C~iC~~~~~~~~~~----pCgH~~~C~~C~~~~-----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFV----PCGHLVTCKQCAEAV-----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCEEEE----TTCCBCCCHHHHTTC-----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCEEEc----CCCChhHHHHhhhcC-----ccCCCcCcCcc
Confidence 456799999998776444 59999 999999887 78999999875
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.75 E-value=1.6e-09 Score=88.57 Aligned_cols=53 Identities=19% Similarity=0.454 Sum_probs=40.5
Q ss_pred CCcccccccccccccc----ceeeecCCCCCcccHHHHHHHHhcCC----------CCCCccCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQ----DEIRRLTNCRHIFHRGCLDRWMAYDQ----------KTCPLCRTPFI 135 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~Fh~~Ci~~wl~~~~----------~~CP~Cr~~~~ 135 (171)
+...+|+||++.+... +.....++|+|.||..|+.+|++... ..||.||.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4567899999998773 33333447999999999999996311 46999999874
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.74 E-value=5.8e-09 Score=78.47 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=46.5
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCchhhH
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQDS 142 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~ 142 (171)
.....|+||++.+.+|..+ +|||.|+..||..|+..+..+||.|+.++...++...
T Consensus 104 p~~f~CPI~~elm~DPV~~----~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 104 PDYLCGKISFELMREPCIT----PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp CGGGBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred cHhhcccCccccCCCCeEC----CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcch
Confidence 5678899999999998665 6999999999999997544579999999876665443
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.3e-08 Score=64.51 Aligned_cols=44 Identities=20% Similarity=0.524 Sum_probs=35.6
Q ss_pred CccccccccccccccceeeecCCCCCc-ccHHHHHHHHhcCCCCCCccCCCCCC
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHI-FHRGCLDRWMAYDQKTCPLCRTPFIP 136 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 136 (171)
++..|+||++.+.++..+ +|||. ||..|+.. ...||+||.++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~----pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFV----PCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCS----SSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEe----cCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 356799999998776444 59999 99999953 4789999998754
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.55 E-value=2.2e-08 Score=79.23 Aligned_cols=55 Identities=20% Similarity=0.456 Sum_probs=44.1
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHhcC-CCCCCc--cCCCCCCCchhh
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYD-QKTCPL--CRTPFIPDDMQD 141 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~-~~~CP~--Cr~~~~~~~~~~ 141 (171)
.+..|+||++.|..|.... .|||.|++.||..|+..+ ...||+ |+..+...++..
T Consensus 180 ~el~CPIcl~~f~DPVts~---~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISR---KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp CCSBCTTTSSBCSSEEEES---SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEE
T ss_pred eeeECcCccCcccCCeeeC---CCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCc
Confidence 4567999999999986532 699999999999999742 357999 999877666544
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.48 E-value=1.5e-07 Score=58.29 Aligned_cols=49 Identities=24% Similarity=0.638 Sum_probs=36.8
Q ss_pred CCccccccccccccccceeeecCCCC--C---cccHHHHHHHHhc-CCCCCCccCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCR--H---IFHRGCLDRWMAY-DQKTCPLCRTPFI 135 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~--H---~Fh~~Ci~~wl~~-~~~~CP~Cr~~~~ 135 (171)
++...|.||+++... .+ .+| |. + .||..|+.+|+.. ++.+||+|+.++.
T Consensus 4 ~~~~~CrIC~~~~~~--~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGN--ER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSC--CC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCC--ce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456789999997433 23 344 55 4 8999999999964 4678999998864
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=1.3e-07 Score=60.00 Aligned_cols=46 Identities=28% Similarity=0.642 Sum_probs=35.9
Q ss_pred CCCccccccccccccccceeeecCCCCCc-ccHHHHHHHHhcCCCCCCccCCCCCC
Q 030807 82 VDPPDSCAVCLYEFEEQDEIRRLTNCRHI-FHRGCLDRWMAYDQKTCPLCRTPFIP 136 (171)
Q Consensus 82 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 136 (171)
..+...|.||++...+. ..+ +|+|. ||..|+.. ...||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~---v~~-pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNW---VLL-PCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCC---EET-TTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCE---EEE-CCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 35577899999986653 334 59999 99999973 4789999998753
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.40 E-value=4.8e-08 Score=63.84 Aligned_cols=44 Identities=25% Similarity=0.534 Sum_probs=34.9
Q ss_pred CccccccccccccccceeeecCCCCCc-ccHHHHHHHHhcCCCCCCccCCCCCC
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHI-FHRGCLDRWMAYDQKTCPLCRTPFIP 136 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 136 (171)
++..|+||++.+.+... + +|||. ||..|+..| ..||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~~v~---~-pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTF---C-PCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEE---E-TTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEE---E-CCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 35679999998776543 4 59999 999999765 489999998753
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.29 E-value=5.9e-07 Score=60.71 Aligned_cols=46 Identities=26% Similarity=0.537 Sum_probs=36.5
Q ss_pred ccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCC
Q 030807 87 SCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFI 135 (171)
Q Consensus 87 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~ 135 (171)
.|++|--++.. ..+.+| |+|+||.+|+..|.+++.+.||.|+.++.
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 47777666544 344555 99999999999999767899999998874
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.25 E-value=2.8e-07 Score=57.24 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=41.8
Q ss_pred ccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCchh
Q 030807 85 PDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQ 140 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~ 140 (171)
...|+|+++.+.++.. .+++||.|.+.||.+|++ .+..||+.+.++..+++.
T Consensus 3 ~~~CpIs~~~m~dPV~---~~~sG~~yer~~I~~~l~-~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 3 HMLCAISGKVPRRPVL---SPKSRTIFEKSLLEQYVK-DTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp -CCCTTTCSCCSSEEE---ETTTTEEEEHHHHHHHHH-HHSBCTTTCCBCCGGGCE
T ss_pred eEEecCCCCCCCCCEE---eCCCCcEEcHHHHHHHHH-hCCCCcCCcCCCChhhcE
Confidence 3569999999998733 225999999999999998 466799999998766543
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.24 E-value=2e-07 Score=76.82 Aligned_cols=44 Identities=25% Similarity=0.615 Sum_probs=36.7
Q ss_pred CCccccccccccccccceeeecCCCCCc-ccHHHHHHHHhcCCCCCCccCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHI-FHRGCLDRWMAYDQKTCPLCRTPFI 135 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~wl~~~~~~CP~Cr~~~~ 135 (171)
.++..|+||++.+..+..+ +|||. ||..|+..| ..||+||.++.
T Consensus 293 ~~~~~C~IC~~~~~~~v~l----pCgH~~fC~~C~~~~-----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFI----PCGHLVVCQECAPSL-----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEE----TTCCEEECTTTGGGC-----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCceEEc----CCCChhHhHHHHhcC-----CcCCCCCCCcc
Confidence 3457899999998876544 59999 999999876 67999999875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.93 E-value=9.5e-06 Score=63.48 Aligned_cols=50 Identities=16% Similarity=0.493 Sum_probs=39.9
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHhcC-CCCCCccCCCCCC
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYD-QKTCPLCRTPFIP 136 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~-~~~CP~Cr~~~~~ 136 (171)
....|.+|.+....+. .++.|+|.||..|+..|++.+ +..||.|+.++..
T Consensus 179 ~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4678999999988752 344699999999999999743 4589999988653
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.28 E-value=0.0056 Score=40.67 Aligned_cols=49 Identities=24% Similarity=0.665 Sum_probs=38.5
Q ss_pred CCccccccccccccccceeeecCCCC-CcccHHHHHHHHhcCCCCCCccCCCCCCCc
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCR-HIFHRGCLDRWMAYDQKTCPLCRTPFIPDD 138 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~-H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 138 (171)
.....|-.||-..+. -+ .|. |-+|..|+...+. .+..||+|+.+++.+-
T Consensus 26 ~G~~nCKsCWf~~k~--LV----~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG--LV----ECNNHYLCLNCLTLLLS-VSNRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCCCCSSCSCCSS--EE----ECSSCEEEHHHHHHTCS-SSSEETTTTEECCCCS
T ss_pred cCcccChhhccccCC--ee----eecchhhHHHHHHHHHh-hccCCcccCCcCCcce
Confidence 456779999987553 23 354 9999999999987 6899999999987554
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.15 E-value=0.032 Score=37.04 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=25.2
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHH
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRW 119 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~w 119 (171)
++..|.||.+.+..+....-+ .|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~-~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCV-TCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEET-TTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECC-cCChHHhHHHCHHH
Confidence 356799999864333333234 59999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.76 E-value=0.066 Score=33.20 Aligned_cols=48 Identities=25% Similarity=0.450 Sum_probs=34.1
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhcC---CCCCCccCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYD---QKTCPLCRTPF 134 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~---~~~CP~Cr~~~ 134 (171)
.....|.+|.+. + .+.....|...||..|+...+..- .=.||.|+...
T Consensus 10 ~~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 455679999753 3 344566799999999998877532 23699997654
No 76
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=88.41 E-value=0.4 Score=28.99 Aligned_cols=44 Identities=25% Similarity=0.601 Sum_probs=31.9
Q ss_pred cccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccC
Q 030807 86 DSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCR 131 (171)
Q Consensus 86 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr 131 (171)
..|-.|...+.... .-..+.|++.||.+| +..+...-.+||.|.
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDC-DVFVHDSLHSCPGCI 59 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHH-HHTTTTTSCSSSTTC
T ss_pred CcccccCcccCCCc-cEECCccCcCcccch-hHHHHhhccCCcCCC
Confidence 45999998885433 235778999999999 444544567899883
No 77
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=86.81 E-value=1.4 Score=28.83 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=39.1
Q ss_pred Cccccccccccccc---cceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCC
Q 030807 84 PPDSCAVCLYEFEE---QDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFI 135 (171)
Q Consensus 84 ~~~~C~ICl~~~~~---~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~ 135 (171)
....|.||-++... ++.......|+--.|+.|...=.+.++..||.|+.+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45679999998533 33333344688789999998888878999999998764
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=83.48 E-value=0.48 Score=29.64 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=34.0
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhc---CCCCCCccCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---DQKTCPLCRTP 133 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~CP~Cr~~ 133 (171)
.+...|.+|..... +..+.....|..-||..|+..-... ..-.||.|+..
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 45567999987753 4445556679999999998654321 23459999654
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=82.99 E-value=0.51 Score=28.45 Aligned_cols=46 Identities=35% Similarity=0.668 Sum_probs=31.8
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhc---CCCCCCccCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---DQKTCPLCRT 132 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~CP~Cr~ 132 (171)
..+..|.+|... ..+.....|...||..|+..-+.. +.=.||.|+.
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456789999863 244455679999999999874421 2335888854
No 80
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=82.70 E-value=1.9 Score=29.04 Aligned_cols=49 Identities=22% Similarity=0.482 Sum_probs=31.9
Q ss_pred CCccccccccccc-----cccceeeecCCCCCcccHHHHHH------HHhcCCCCCCccC
Q 030807 83 DPPDSCAVCLYEF-----EEQDEIRRLTNCRHIFHRGCLDR------WMAYDQKTCPLCR 131 (171)
Q Consensus 83 ~~~~~C~ICl~~~-----~~~~~~~~l~~C~H~Fh~~Ci~~------wl~~~~~~CP~Cr 131 (171)
.....|.+|+..- ..+..+.....|+..||..|+.. .+....=.||.|+
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 3456799998753 22345555667999999999952 2333455677774
No 81
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=82.38 E-value=1.1 Score=27.49 Aligned_cols=35 Identities=29% Similarity=0.695 Sum_probs=26.5
Q ss_pred CCccccccccccccccceeeecC-CCCCcccHHHHH
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLT-NCRHIFHRGCLD 117 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~-~C~H~Fh~~Ci~ 117 (171)
+....|.+|..++......+... .|.--||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 44567999999987777776666 799999999973
No 82
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=78.52 E-value=1.2 Score=41.02 Aligned_cols=58 Identities=10% Similarity=0.080 Sum_probs=46.7
Q ss_pred CCccccccccccccccceeeecCCCC-CcccHHHHHHHHhcCCCCCCccCCCCCCCchhhHHHH
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCR-HIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQDSFNE 145 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~-H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~~~ 145 (171)
.+...|||-.+-+.+|..+ +-| +.|=+..|.+|+. .+.+||.=|.++...++.....-
T Consensus 889 P~~F~cPIs~~lM~DPVil----psG~~TydR~~I~~wl~-~~~tdP~Tr~~L~~~~liPN~~L 947 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVIL----PASKMNIDRSTIKAHLL-SDSTDPFNRMPLKLEDVTPNEEL 947 (968)
T ss_dssp CGGGBCTTTCSBCSSEEEC----TTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCGGGCEECHHH
T ss_pred cHHhCCcchhhHHhCCeEc----CCCCEEECHHHHHHHHh-cCCCCCCCCCCCCcccccccHHH
Confidence 4567799999999999666 576 6899999999998 58899999999987665554433
No 83
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=78.11 E-value=0.58 Score=35.16 Aligned_cols=47 Identities=26% Similarity=0.523 Sum_probs=33.6
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhc---CCCCCCccCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---DQKTCPLCRTP 133 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~CP~Cr~~ 133 (171)
.++..|.+|... + .+.....|...||..|+..-+.. +.=.||.|+..
T Consensus 5 ~~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 456779999753 2 35566679999999999765532 23469999864
No 84
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=77.58 E-value=2.1 Score=27.75 Aligned_cols=36 Identities=31% Similarity=0.629 Sum_probs=24.7
Q ss_pred CCCccccccccccccccceeeecCCCCCcccHHHHHHH
Q 030807 82 VDPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRW 119 (171)
Q Consensus 82 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~w 119 (171)
...+..|.||-.- ... .+....-|+-+||..|+.+.
T Consensus 12 ~~~D~~C~VC~~~-t~~-~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVW-TAE-SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCC-CSS-CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccc-ccc-ceeccccccccccHhhcccc
Confidence 3567889999642 222 22233359999999999986
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=76.25 E-value=0.64 Score=28.00 Aligned_cols=48 Identities=25% Similarity=0.522 Sum_probs=32.2
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhc---CCCCCCccCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---DQKTCPLCRTPF 134 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~CP~Cr~~~ 134 (171)
.++..|.+|.+. + .+.....|...||..|+..-+.. +.=.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456779999752 2 34445569999999999754431 233599997653
No 86
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=74.78 E-value=4 Score=28.95 Aligned_cols=47 Identities=19% Similarity=0.464 Sum_probs=33.3
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHh----------cCCCCCCccCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMA----------YDQKTCPLCRTP 133 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~----------~~~~~CP~Cr~~ 133 (171)
..+..|.+|.+- ++ +.....|...||..|+..-+. .+.=.||.|+..
T Consensus 61 g~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 567889999763 33 334557999999999996552 134469999853
No 87
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=74.71 E-value=1.6 Score=26.24 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=34.5
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHh----cCCCCCCccCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMA----YDQKTCPLCRT 132 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~----~~~~~CP~Cr~ 132 (171)
.+...|++|...+...........|..=||..|+.--.. ...-.||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 456779999988765555555667888899999854221 12456888865
No 88
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=74.55 E-value=0.85 Score=33.52 Aligned_cols=47 Identities=26% Similarity=0.543 Sum_probs=33.2
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHhc---CCCCCCccCCCC
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---DQKTCPLCRTPF 134 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~CP~Cr~~~ 134 (171)
++..|.+|... ++ +.....|...||..|+..-+.. +.=.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46779999754 33 4456679999999998765532 234699998754
No 89
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=72.60 E-value=9.2 Score=22.48 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=21.3
Q ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 030807 1 MGFPVVYSELIIPKLLLHTLSVLGFIRKLITILFTC 36 (171)
Q Consensus 1 mg~p~~~~~~~ip~~l~~~l~~l~~i~~~~~~l~~~ 36 (171)
||-|. +..+..+++++++.+..+..+++.++.+
T Consensus 1 ~~~~~---~vp~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 1 MGLPG---RVPLWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp CCCCC---CCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCc---cCchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77773 4556666667777666666666666654
No 90
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=72.36 E-value=0.96 Score=30.74 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=29.7
Q ss_pred ccccccccccc------ccceeeecCCCCCcccHHHHHHH------HhcCCCCCCccC
Q 030807 86 DSCAVCLYEFE------EQDEIRRLTNCRHIFHRGCLDRW------MAYDQKTCPLCR 131 (171)
Q Consensus 86 ~~C~ICl~~~~------~~~~~~~l~~C~H~Fh~~Ci~~w------l~~~~~~CP~Cr 131 (171)
..|.+|+..-. .+..+.....|+..||..|+... +....=.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 46899987541 23355555679999999998743 232444676663
No 91
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=72.07 E-value=1.6 Score=26.35 Aligned_cols=51 Identities=20% Similarity=0.500 Sum_probs=34.6
Q ss_pred CCccccccccccc-cccceeeecCCCCCcccHHHHHHHHh------cCCCCCCccCCC
Q 030807 83 DPPDSCAVCLYEF-EEQDEIRRLTNCRHIFHRGCLDRWMA------YDQKTCPLCRTP 133 (171)
Q Consensus 83 ~~~~~C~ICl~~~-~~~~~~~~l~~C~H~Fh~~Ci~~wl~------~~~~~CP~Cr~~ 133 (171)
.++..|.+|.... ..+..+.....|...||..|+..-+. .+.=.|+.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 4567899999764 33345556678999999999875331 133468888643
No 92
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=71.47 E-value=0.98 Score=32.76 Aligned_cols=49 Identities=22% Similarity=0.554 Sum_probs=33.2
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHh----cCCCCCCccCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMA----YDQKTCPLCRT 132 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~----~~~~~CP~Cr~ 132 (171)
.+...| +|.........+.....|..-||..|+.---. ...-.||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 345678 99887654555556667999999999842111 13557999974
No 93
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=70.56 E-value=2.7 Score=26.07 Aligned_cols=33 Identities=18% Similarity=0.486 Sum_probs=24.4
Q ss_pred ccccccccccccccceeeecCCCCCcccHHHHH
Q 030807 85 PDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLD 117 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~ 117 (171)
+..|.+|...|..-..---...||.+||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 357999999987654333345799999999964
No 94
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=70.19 E-value=3.7 Score=26.54 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=36.1
Q ss_pred CCccccccccccc-cccceeeecCCCCCcccHHHHHHHHh-cCCCCCCccCCCCCC
Q 030807 83 DPPDSCAVCLYEF-EEQDEIRRLTNCRHIFHRGCLDRWMA-YDQKTCPLCRTPFIP 136 (171)
Q Consensus 83 ~~~~~C~ICl~~~-~~~~~~~~l~~C~H~Fh~~Ci~~wl~-~~~~~CP~Cr~~~~~ 136 (171)
+++..|.||...- .....+.....|.-.||..|+..-.. .+.=.||.|......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 5678899998753 34456666778999999999964321 123358888654433
No 95
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=69.17 E-value=8.6 Score=26.74 Aligned_cols=47 Identities=19% Similarity=0.463 Sum_probs=32.5
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHH------h----cCCCCCCccCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWM------A----YDQKTCPLCRTP 133 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl------~----~~~~~CP~Cr~~ 133 (171)
..+..|.+|.+- -.+.-...|...||..|+..-+ . ...=.|+.|+.+
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 566779999764 3343445799999999999752 1 123479999653
No 96
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=68.82 E-value=2.5 Score=24.07 Aligned_cols=45 Identities=29% Similarity=0.611 Sum_probs=29.3
Q ss_pred ccccccccccccceeeecCCCCCcccHHHHHHHHhc---CCCCCCccCC
Q 030807 87 SCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---DQKTCPLCRT 132 (171)
Q Consensus 87 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~CP~Cr~ 132 (171)
.|.+|...-.. ..+.....|...||..|+..=+.. +.=.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888765433 344455679999999999753321 1235888864
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.78 E-value=1.3 Score=29.99 Aligned_cols=48 Identities=23% Similarity=0.495 Sum_probs=31.8
Q ss_pred ccccccccccccccceeeecCCCCCcccHHHHHHHHhc---CCCCCCccCC
Q 030807 85 PDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---DQKTCPLCRT 132 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~CP~Cr~ 132 (171)
-..|.+|...-.++..+.....|...||..|+..-+.. +.=.||.|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 34688888654444455555679999999998765432 1236888874
No 98
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=68.74 E-value=1.1 Score=30.03 Aligned_cols=48 Identities=29% Similarity=0.476 Sum_probs=31.3
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhc---CCCCCCccC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---DQKTCPLCR 131 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~CP~Cr 131 (171)
.+++.|.+|.+.-...+ +.....|...||..|+...... ..-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~-ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLD-QFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTT-SEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcC-CeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 46788999987643222 2344579999999999876531 233466654
No 99
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=68.73 E-value=4.6 Score=25.00 Aligned_cols=49 Identities=20% Similarity=0.379 Sum_probs=32.4
Q ss_pred CCccccccccccc-cccceeeecCCCCCcccHHHHHHHHh-cCCCCCCccC
Q 030807 83 DPPDSCAVCLYEF-EEQDEIRRLTNCRHIFHRGCLDRWMA-YDQKTCPLCR 131 (171)
Q Consensus 83 ~~~~~C~ICl~~~-~~~~~~~~l~~C~H~Fh~~Ci~~wl~-~~~~~CP~Cr 131 (171)
.++..|.||...- ..+..+.....|.-.||..|+..-.. .+.=.||.|+
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~ 64 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCL 64 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCc
Confidence 5677899998753 34456666678999999999864211 1223466664
No 100
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.13 E-value=5 Score=25.15 Aligned_cols=52 Identities=25% Similarity=0.526 Sum_probs=34.0
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHh----cCCCCCCccCCCCCC
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMA----YDQKTCPLCRTPFIP 136 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~----~~~~~CP~Cr~~~~~ 136 (171)
+...| +|...+...........|..=||..|+.---. ...-.||.|+..-.+
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 34556 89887754445555556988899999853211 135579999876443
No 101
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=68.12 E-value=3 Score=26.62 Aligned_cols=36 Identities=17% Similarity=0.385 Sum_probs=26.5
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHH
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDR 118 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~ 118 (171)
.+...|.+|...|..-..---...||.+||..|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 345679999999876544333457999999999644
No 102
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=68.06 E-value=3.5 Score=26.63 Aligned_cols=36 Identities=25% Similarity=0.461 Sum_probs=26.2
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHH
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDR 118 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~ 118 (171)
.+...|.+|...|..-..---...||.+||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 445679999999876544333457999999999644
No 103
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=68.00 E-value=1.7 Score=28.31 Aligned_cols=47 Identities=23% Similarity=0.542 Sum_probs=33.3
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhc---CCCCCCccCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---DQKTCPLCRTP 133 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~CP~Cr~~ 133 (171)
.++..|.+|... + .+.....|.-.||..|+.+=+.. +.=.||.|+..
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 567789999864 2 34455679999999999775532 23359999854
No 104
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=67.60 E-value=2.9 Score=28.89 Aligned_cols=34 Identities=21% Similarity=0.467 Sum_probs=25.0
Q ss_pred ccccccccccccccceeeecCCCCCcccHHHHHH
Q 030807 85 PDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDR 118 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~ 118 (171)
...|.+|...|..-..---...||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4579999999876543333457999999999643
No 105
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=67.53 E-value=3 Score=27.00 Aligned_cols=36 Identities=19% Similarity=0.448 Sum_probs=26.2
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHH
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRW 119 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~w 119 (171)
+...|.+|...|..-..---...||++||..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 345799999988765443345579999999997554
No 106
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=67.18 E-value=3.1 Score=26.37 Aligned_cols=36 Identities=31% Similarity=0.607 Sum_probs=26.2
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHH
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDR 118 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~ 118 (171)
.+...|.+|...|..-..---...||.+||..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 345679999999876543333457999999999654
No 107
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=64.25 E-value=20 Score=22.93 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=30.1
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhc
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY 122 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~ 122 (171)
.....|.+|.+.+++.-.+.--.-=.|.||..|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 4456799999999988777321123599999999999864
No 108
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.53 E-value=2.8 Score=31.56 Aligned_cols=35 Identities=23% Similarity=0.523 Sum_probs=25.5
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHH
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDR 118 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~ 118 (171)
++..|.+|...|..-.+---+..||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 45789999999875443333557999999988543
No 109
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=62.87 E-value=3.7 Score=20.99 Aligned_cols=27 Identities=19% Similarity=0.506 Sum_probs=18.9
Q ss_pred cccccccccccccceeeecCCCCCcccHHH
Q 030807 86 DSCAVCLYEFEEQDEIRRLTNCRHIFHRGC 115 (171)
Q Consensus 86 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~C 115 (171)
..|+.|-......+.+. .-|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE---ECCeEecccC
Confidence 46888888776666554 3567788877
No 110
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=62.87 E-value=3.2 Score=31.54 Aligned_cols=35 Identities=20% Similarity=0.513 Sum_probs=26.0
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHH
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDR 118 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~ 118 (171)
++..|.+|...|..-.+---+..||.+||..|-..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 45689999999876544334557999999999644
No 111
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.11 E-value=3.8 Score=26.07 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=24.3
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHH
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLD 117 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~ 117 (171)
+...|.+|...|..-.+---...||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 4467999999986544332344699999999853
No 112
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=62.04 E-value=2.1 Score=24.70 Aligned_cols=45 Identities=16% Similarity=0.377 Sum_probs=29.4
Q ss_pred ccccccccccccceeeecC-CCCCcccHHHHHHHH---hcCCCCCCccC
Q 030807 87 SCAVCLYEFEEQDEIRRLT-NCRHIFHRGCLDRWM---AYDQKTCPLCR 131 (171)
Q Consensus 87 ~C~ICl~~~~~~~~~~~l~-~C~H~Fh~~Ci~~wl---~~~~~~CP~Cr 131 (171)
.|.+|..++..+....... .|..=||..|+.--. ...+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4678888886665565555 588789999975321 11456788875
No 113
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=61.81 E-value=6.2 Score=25.91 Aligned_cols=47 Identities=17% Similarity=0.405 Sum_probs=31.2
Q ss_pred ccccccccccccccceeeecCCCCCcccHHHHHHHHhc--CCCCCCccCCC
Q 030807 85 PDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY--DQKTCPLCRTP 133 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~--~~~~CP~Cr~~ 133 (171)
...| ||......+. +.....|.--||..|+..-... ..-.||.|+..
T Consensus 28 ~vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CEEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 3567 8877655554 4456679999999998653221 13469999854
No 114
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=60.53 E-value=7.4 Score=31.95 Aligned_cols=53 Identities=15% Similarity=0.370 Sum_probs=35.1
Q ss_pred cccccccccccccceeeecCCCCCc--ccHHHHHHHH-hcCCCCCCccCCCCCCCchhh
Q 030807 86 DSCAVCLYEFEEQDEIRRLTNCRHI--FHRGCLDRWM-AYDQKTCPLCRTPFIPDDMQD 141 (171)
Q Consensus 86 ~~C~ICl~~~~~~~~~~~l~~C~H~--Fh~~Ci~~wl-~~~~~~CP~Cr~~~~~~~~~~ 141 (171)
..|++-...+..+.+-. .|.|. |=..-+.... +...-.||+|...+...++..
T Consensus 250 L~CPlS~~ri~~PvRg~---~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~I 305 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSI---NCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAI 305 (371)
T ss_dssp SBCTTTSSBCSSEEEET---TCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred ecCCCccccccccCcCC---cCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence 46998888888775543 69998 4433333333 224567999999887666544
No 115
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=60.16 E-value=1.9 Score=31.97 Aligned_cols=45 Identities=24% Similarity=0.543 Sum_probs=30.7
Q ss_pred ccccccccccccccceeeecCCCCCcccHHHHHHHHhc---CCCCCCccCCC
Q 030807 85 PDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---DQKTCPLCRTP 133 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~CP~Cr~~ 133 (171)
+..|.+|... ++ +.....|...||..|+..=+.. +.-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999854 33 4345569999999999754421 23369999865
No 116
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=59.24 E-value=4.4 Score=28.38 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=24.5
Q ss_pred CCcccccccccccc-ccceeeecCCCCCcccHHHHH
Q 030807 83 DPPDSCAVCLYEFE-EQDEIRRLTNCRHIFHRGCLD 117 (171)
Q Consensus 83 ~~~~~C~ICl~~~~-~~~~~~~l~~C~H~Fh~~Ci~ 117 (171)
.++..|.+|...|. ....-.....|+|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 56788999999984 222223455699999888853
No 117
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=58.39 E-value=8.6 Score=31.45 Aligned_cols=53 Identities=13% Similarity=0.232 Sum_probs=35.5
Q ss_pred cccccccccccccceeeecCCCCCc--ccHHHHHHHH-hcCCCCCCccCCCCCCCchhh
Q 030807 86 DSCAVCLYEFEEQDEIRRLTNCRHI--FHRGCLDRWM-AYDQKTCPLCRTPFIPDDMQD 141 (171)
Q Consensus 86 ~~C~ICl~~~~~~~~~~~l~~C~H~--Fh~~Ci~~wl-~~~~~~CP~Cr~~~~~~~~~~ 141 (171)
..|++-...+..|.+-. .|.|. |=..-+.... +.+.-.||+|...+...++..
T Consensus 216 L~CPlS~~ri~~P~Rg~---~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~I 271 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAV---TCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLIL 271 (360)
T ss_dssp SBCTTTCSBCSSEEEET---TCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEE
T ss_pred eeCCCccceeccCCcCC---CCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEE
Confidence 45998888887775543 69998 5444333333 224567999999887766544
No 118
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=58.08 E-value=5 Score=29.63 Aligned_cols=51 Identities=18% Similarity=0.403 Sum_probs=36.2
Q ss_pred ccccccccccccccce---eeecCCCCCcccHHHHHHH------Hh----cCCCCCCccCCCCC
Q 030807 85 PDSCAVCLYEFEEQDE---IRRLTNCRHIFHRGCLDRW------MA----YDQKTCPLCRTPFI 135 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~~---~~~l~~C~H~Fh~~Ci~~w------l~----~~~~~CP~Cr~~~~ 135 (171)
+..|+||...+..++. ...+..|..=||..|..-- +. ...-.||.|+..-.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 3569999999888763 5666679999999997421 11 01568999987643
No 119
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=57.50 E-value=4.7 Score=27.72 Aligned_cols=47 Identities=21% Similarity=0.484 Sum_probs=30.1
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccC
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCR 131 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr 131 (171)
....|..|-..|..-.+---...||.+||..|...... ....|-.|-
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHHH
Confidence 34679999999876443333557999999999766544 355676664
No 120
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=56.65 E-value=2.2 Score=21.14 Aligned_cols=18 Identities=17% Similarity=0.606 Sum_probs=11.0
Q ss_pred CCCCccCCCCCCCchhhH
Q 030807 125 KTCPLCRTPFIPDDMQDS 142 (171)
Q Consensus 125 ~~CP~Cr~~~~~~~~~~~ 142 (171)
-.||+|..-.+..++..+
T Consensus 7 vqcpvcqq~mpaahin~h 24 (29)
T 3vhs_A 7 VQCPVCQQMMPAAHINSH 24 (29)
T ss_dssp EECTTTCCEEEGGGHHHH
T ss_pred eeChHHHHhCcHHHHHHH
Confidence 358888776655555443
No 121
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=55.64 E-value=5.2 Score=26.70 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=32.8
Q ss_pred ccccccccccccccceeeecC-CCCCcccHHHHHHHH---------hcCCCCCCccCCC
Q 030807 85 PDSCAVCLYEFEEQDEIRRLT-NCRHIFHRGCLDRWM---------AYDQKTCPLCRTP 133 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~~~~~l~-~C~H~Fh~~Ci~~wl---------~~~~~~CP~Cr~~ 133 (171)
...|.+|...+.......... .|..=||..|+.--- ....-.||.|+..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 356999999986655555554 688889999974211 0024469999754
No 122
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=54.59 E-value=2.8 Score=28.18 Aligned_cols=23 Identities=22% Similarity=0.738 Sum_probs=15.6
Q ss_pred CCCCcccHHHHHHHHhcCCCCCCccCCCC
Q 030807 106 NCRHIFHRGCLDRWMAYDQKTCPLCRTPF 134 (171)
Q Consensus 106 ~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~ 134 (171)
.||+.|. .-+. ....||.|++.-
T Consensus 72 ~CG~~F~-----~~~~-kPsrCP~CkSe~ 94 (105)
T 2gmg_A 72 KCGFVFK-----AEIN-IPSRCPKCKSEW 94 (105)
T ss_dssp TTCCBCC-----CCSS-CCSSCSSSCCCC
T ss_pred hCcCeec-----ccCC-CCCCCcCCCCCc
Confidence 6999991 1111 457899999754
No 123
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=53.76 E-value=2.7 Score=34.54 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=0.0
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHH
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWM 120 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl 120 (171)
+...|..|...|..-.+---+..||++||..|.....
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 4567999999887543333345799999999987654
No 124
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=51.90 E-value=6.6 Score=23.15 Aligned_cols=45 Identities=27% Similarity=0.609 Sum_probs=29.4
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhc---CCCCCCccC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---DQKTCPLCR 131 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~CP~Cr 131 (171)
.++..|.+|... + .+.....|...||..|+..-+.. +.-.||.|+
T Consensus 3 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~ 50 (60)
T 2puy_A 3 IHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 50 (60)
T ss_dssp CCCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHH
T ss_pred CCCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhcc
Confidence 356779999874 3 34455679999999999754321 122477774
No 125
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.94 E-value=5.4 Score=23.23 Aligned_cols=45 Identities=27% Similarity=0.638 Sum_probs=29.6
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhc---CCCCCCccC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---DQKTCPLCR 131 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~CP~Cr 131 (171)
.++..|.+|... + .+.....|...||..|+..-+.. +.=.||.|+
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 556789999874 2 34455579999999998754321 122477664
No 126
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=50.12 E-value=5.6 Score=26.79 Aligned_cols=60 Identities=13% Similarity=0.236 Sum_probs=41.0
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCchhhHHHHHHHH
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQDSFNERLWA 149 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~ 149 (171)
+-..|..|...+....... .=+..||..|..+. ....|..|..++.+.+......++.|+
T Consensus 29 ~CF~C~~C~~~L~~~~f~~---~~g~~yC~~cy~~~---~~~~C~~C~~~I~~~~~~~~a~~~~~H 88 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVM---VNDKPVCKPCYVKN---HAVVCQGCHNAIDPEVQRVTYNNFSWH 88 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEE---ETTEEEEHHHHHHH---SCCBCTTTCSBCCTTSCEEEETTEEEE
T ss_pred CCCCcCCCCCCCCcCEEEe---ECCEEechHHhCcC---cCccCcccCCcCCcCceEEECCCCEee
Confidence 4567888988876543222 35677899998664 467899999999865443444556666
No 127
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=49.71 E-value=3.7 Score=31.43 Aligned_cols=46 Identities=28% Similarity=0.561 Sum_probs=27.2
Q ss_pred cccccccccccccceeeecCCCCCcccHHHHHHHHhc---C-CCCCCccCC
Q 030807 86 DSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---D-QKTCPLCRT 132 (171)
Q Consensus 86 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~-~~~CP~Cr~ 132 (171)
..|.+|...-. +..+..+..|...||..|+.+=+.. + .=.||.|+.
T Consensus 175 c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 36888876422 3344456679999999999854432 1 235999964
No 128
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=49.37 E-value=5.5 Score=24.06 Aligned_cols=46 Identities=28% Similarity=0.533 Sum_probs=31.0
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhc---CCCCCCccCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---DQKTCPLCRT 132 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~CP~Cr~ 132 (171)
.++..|.+|.+. + .+.....|...||..|+..-+.. +.=.||.|..
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456789999864 2 34455679999999999754321 2235888854
No 129
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=48.57 E-value=2.2 Score=22.68 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=8.3
Q ss_pred cccccccccccccce
Q 030807 86 DSCAVCLYEFEEQDE 100 (171)
Q Consensus 86 ~~C~ICl~~~~~~~~ 100 (171)
..||+|+..+...+.
T Consensus 6 FiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 6 FICPQCMKSLGSADE 20 (34)
T ss_dssp EECTTTCCEESSHHH
T ss_pred cCCcHHHHHcCCHHH
Confidence 456666665555443
No 130
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=47.46 E-value=5.6 Score=24.45 Aligned_cols=45 Identities=29% Similarity=0.595 Sum_probs=28.4
Q ss_pred ccccccccccccceeeecCCCCCcccHHHHHHHHhc---C-CCCCCccCC
Q 030807 87 SCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---D-QKTCPLCRT 132 (171)
Q Consensus 87 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~-~~~CP~Cr~ 132 (171)
.|.+|...-.. ..+.....|...||..|+..=+.. + .=.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 56677654323 344455679999999999754432 1 335888864
No 131
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=46.86 E-value=17 Score=24.37 Aligned_cols=47 Identities=21% Similarity=0.402 Sum_probs=29.9
Q ss_pred CCccccccccccccccceeeecC--CCCCcccHHHHHHHHhc---CCCCCCccCCCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLT--NCRHIFHRGCLDRWMAY---DQKTCPLCRTPFI 135 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~Fh~~Ci~~wl~~---~~~~CP~Cr~~~~ 135 (171)
.++..|.+|.+ .+ .+.... .|...||..|+. +.. +.=.||.|+..+.
T Consensus 13 ~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 56778999983 23 343443 488999999987 432 1224887765443
No 132
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=45.20 E-value=7 Score=23.32 Aligned_cols=18 Identities=33% Similarity=0.909 Sum_probs=10.3
Q ss_pred HHhcCCCCCCccCCCCCC
Q 030807 119 WMAYDQKTCPLCRTPFIP 136 (171)
Q Consensus 119 wl~~~~~~CP~Cr~~~~~ 136 (171)
|+..+...||.|+.++..
T Consensus 1 wi~~~~k~CP~C~~~Iek 18 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEK 18 (60)
T ss_dssp CCCCCCCCCTTTCCCCSS
T ss_pred CccccceECcCCCCeeEe
Confidence 343345667777766543
No 133
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.17 E-value=4.9 Score=25.30 Aligned_cols=46 Identities=28% Similarity=0.501 Sum_probs=29.5
Q ss_pred cccccccccccccceeeecCCCCCcccHHHHHHHHhc---C-CCCCCccCC
Q 030807 86 DSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---D-QKTCPLCRT 132 (171)
Q Consensus 86 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~-~~~CP~Cr~ 132 (171)
..|.+|...-.. ..+.....|...||..|+..=+.. + .=.||.|+.
T Consensus 27 c~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 378888864333 344456679999999999754421 1 235888864
No 134
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=44.76 E-value=11 Score=26.85 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=24.1
Q ss_pred CCccccccccccccccc-eeeecCCCCCcccHHHH
Q 030807 83 DPPDSCAVCLYEFEEQD-EIRRLTNCRHIFHRGCL 116 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~-~~~~l~~C~H~Fh~~Ci 116 (171)
.++..|.+|...|.--. .-.....|+|.+|..|-
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 35788999999864322 12334469999999996
No 135
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=43.98 E-value=16 Score=23.73 Aligned_cols=46 Identities=24% Similarity=0.602 Sum_probs=28.6
Q ss_pred CCccccccccccccccceeeecCC--CC-CcccHHHHHHHHhc---CCCCCCccCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTN--CR-HIFHRGCLDRWMAY---DQKTCPLCRTP 133 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~--C~-H~Fh~~Ci~~wl~~---~~~~CP~Cr~~ 133 (171)
.+...| +|..... +. +..... |. .-||..|+. +.. .+-.||.|+..
T Consensus 34 ~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 345667 9988643 33 333444 55 569999986 322 23469999764
No 136
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=42.80 E-value=8.8 Score=25.43 Aligned_cols=39 Identities=23% Similarity=0.554 Sum_probs=23.0
Q ss_pred cccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCC
Q 030807 86 DSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPF 134 (171)
Q Consensus 86 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~ 134 (171)
..||.|..++..... +.+|..|-... + ....||-|..++
T Consensus 33 ~~CP~Cq~eL~~~g~--------~~hC~~C~~~f-~-~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--------HARCRSCGEFI-E-MKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEETT--------EEEETTTCCEE-E-EEEECTTTCSBC
T ss_pred ccCccCCCcceecCC--------EEECccccchh-h-ccccCcchhhHH
Confidence 679999888754322 22244443221 1 356799998876
No 137
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=42.32 E-value=20 Score=21.94 Aligned_cols=46 Identities=24% Similarity=0.602 Sum_probs=28.7
Q ss_pred CCccccccccccccccceeeecCC--CC-CcccHHHHHHHHhc---CCCCCCccCCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTN--CR-HIFHRGCLDRWMAY---DQKTCPLCRTP 133 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~--C~-H~Fh~~Ci~~wl~~---~~~~CP~Cr~~ 133 (171)
.+...| +|..... +. +..... |. .-||..|+. +.. +.-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 345668 7987643 43 434444 55 579999997 332 23469999764
No 138
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=41.94 E-value=11 Score=25.01 Aligned_cols=12 Identities=42% Similarity=1.049 Sum_probs=10.7
Q ss_pred ccHHHHHHHHhc
Q 030807 111 FHRGCLDRWMAY 122 (171)
Q Consensus 111 Fh~~Ci~~wl~~ 122 (171)
||+.|+..|++.
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999953
No 139
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=41.68 E-value=11 Score=24.93 Aligned_cols=11 Identities=45% Similarity=1.362 Sum_probs=10.4
Q ss_pred ccHHHHHHHHh
Q 030807 111 FHRGCLDRWMA 121 (171)
Q Consensus 111 Fh~~Ci~~wl~ 121 (171)
||..|+..|++
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 140
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=41.64 E-value=5.1 Score=25.79 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=32.6
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCc
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDD 138 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 138 (171)
+-..|..|...+....... .=+..||..|..+ .....|..|..++.+.+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~---~~g~~yC~~cy~~---~~~~~C~~C~~~I~~~~ 80 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVA---KDNKILCNKCTTR---EDSPKCKGCFKAIVAGD 80 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEE---ETTEEECHHHHTT---CCCCBCSSSCCBCCSSS
T ss_pred cCCcccccCCCCCcCeeEC---cCCEEEChhHhhh---hcCCccccCCCccccCC
Confidence 4467888888875543221 2567788888644 24578999999887543
No 141
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=41.15 E-value=12 Score=23.85 Aligned_cols=13 Identities=31% Similarity=0.692 Sum_probs=7.1
Q ss_pred ccccccccccccc
Q 030807 86 DSCAVCLYEFEEQ 98 (171)
Q Consensus 86 ~~C~ICl~~~~~~ 98 (171)
..|+.|..++...
T Consensus 3 ~~CP~C~~~l~~~ 15 (81)
T 2jrp_A 3 ITCPVCHHALERN 15 (81)
T ss_dssp CCCSSSCSCCEEC
T ss_pred CCCCCCCCccccC
Confidence 3466666655443
No 142
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.47 E-value=11 Score=24.41 Aligned_cols=48 Identities=25% Similarity=0.388 Sum_probs=31.7
Q ss_pred CCccccccccccccccceeeecCCCCCcccHHHHHHHHhc---CCCCCCccC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---DQKTCPLCR 131 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~~~CP~Cr 131 (171)
.++..|.||...-.. ..+.....|...||..|+..=+.. +.=.||.|+
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~ 64 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCI 64 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCc
Confidence 456779999876433 345456679999999999743321 122488884
No 143
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=39.06 E-value=14 Score=23.67 Aligned_cols=49 Identities=16% Similarity=0.400 Sum_probs=33.7
Q ss_pred Cccccccccccccc-cceeeecCCCCCcccHHHHHHHHh-------cCCCCCCccCC
Q 030807 84 PPDSCAVCLYEFEE-QDEIRRLTNCRHIFHRGCLDRWMA-------YDQKTCPLCRT 132 (171)
Q Consensus 84 ~~~~C~ICl~~~~~-~~~~~~l~~C~H~Fh~~Ci~~wl~-------~~~~~CP~Cr~ 132 (171)
.+..|.+|...-.. ...+.....|...||..|+..-+. .+.=.|+.|+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 45679999875332 345556677999999999876542 12346888864
No 144
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.80 E-value=19 Score=21.65 Aligned_cols=41 Identities=17% Similarity=0.469 Sum_probs=28.9
Q ss_pred ccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCC
Q 030807 85 PDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPD 137 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 137 (171)
...|+.|-..+...+.+. .-+..||..| ..|..|+.++...
T Consensus 9 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~C---------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS---SLGKDWHKFC---------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE---ETTEEEETTT---------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEE---ECCeEeeCCC---------CCCCCCCCccCCC
Confidence 467999999888666654 3567788666 3588888887643
No 145
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=34.10 E-value=42 Score=24.09 Aligned_cols=46 Identities=24% Similarity=0.495 Sum_probs=30.7
Q ss_pred CCccccccccccccccceeeecC--CCCCcccHHHHHHHHhc---------CCCCCCccCC
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLT--NCRHIFHRGCLDRWMAY---------DQKTCPLCRT 132 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~Fh~~Ci~~wl~~---------~~~~CP~Cr~ 132 (171)
..+..|.+|-+. ..+.... .|...||..||..++-. ..=+|=+|..
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 456678888753 3444443 59999999999998821 1225877764
No 146
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.03 E-value=32 Score=21.11 Aligned_cols=43 Identities=28% Similarity=0.614 Sum_probs=29.4
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCc
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDD 138 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 138 (171)
....|+.|-..+...+.+. .-+..||..| ..|-.|+.++....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~---a~~~~wH~~C---------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC---VNGHFFHRSC---------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC---BTTBCCBTTT---------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE---ECCCeeCCCc---------CEEcCCCCCcCCCc
Confidence 4567999998876665554 3566788776 35778887775444
No 147
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.46 E-value=45 Score=20.77 Aligned_cols=40 Identities=18% Similarity=0.582 Sum_probs=25.2
Q ss_pred ccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCC
Q 030807 85 PDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIP 136 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 136 (171)
...|+.|-..+...+.+. .-+..||..|. .|-.|..++..
T Consensus 15 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~CF---------~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL---ANQQVFHISCF---------RCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE---CSSSEEETTTC---------BCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE---ECCCEECCCCC---------eeCCCCCCCCC
Confidence 456888888776655543 35667776663 36666666543
No 148
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=30.59 E-value=28 Score=24.56 Aligned_cols=61 Identities=10% Similarity=0.228 Sum_probs=37.2
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCchhhHHHHHHHHhc
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQDSFNERLWAAS 151 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~ 151 (171)
+-..|..|...+...... .=+..||..|..+-+ ...|..|..++.+.+......+..|+..
T Consensus 32 ~CF~C~~C~~~L~~~~f~----~~g~~yC~~~y~~~f---~~~C~~C~~~I~~~~~v~~a~~~~~H~~ 92 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFS----RGESVYCKDDFFKRF---GTKCAACQLGIPPTQVVRRAQDFVYHLH 92 (169)
T ss_dssp TTSBCTTTCCBCCSCCEE----SSSCEECHHHHHHHH---SCBCTTTCCBCCTTSEEEEETTEEEEGG
T ss_pred ccCccCCCCCcCCCCCcc----cCCeeeecccccccc---cccccccccccCCCcEEEEcCCceEeeC
Confidence 456788888777665422 356778888876643 4568888887766543323334445443
No 149
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=30.08 E-value=11 Score=25.49 Aligned_cols=65 Identities=14% Similarity=0.234 Sum_probs=37.8
Q ss_pred CCccccccccccccc-c-ceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCchhhHHHHHHHHhc
Q 030807 83 DPPDSCAVCLYEFEE-Q-DEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQDSFNERLWAAS 151 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~-~-~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~ 151 (171)
.+-..|..|-..+.. + .... .=+..||..|..+-+. ....|..|..++.+.+......++.|+.+
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~---~~g~~yC~~~y~~~~~-~~~~C~~C~~~I~~~e~~~~a~~~~~H~~ 93 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYY---KLGRKLCRRDYLRLFG-QDGLCASCDKRIRAYEMTMRVKDKVYHLE 93 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEE---ETTEEECHHHHHHHHC-CCEECTTTCCEECTTSEEEEETTEEEEGG
T ss_pred HHHcccCcCCCccccCCCeEEE---ECCEEeecCchhhhCC-CccChhhcCCccCccceeEeeCCceECcc
Confidence 345678888877753 1 1111 2566788888777543 22378888888865443333344455443
No 150
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=29.89 E-value=9.1 Score=24.04 Aligned_cols=45 Identities=29% Similarity=0.589 Sum_probs=28.0
Q ss_pred ccccccccccccceeeecCCCCCcccHHHHHHHHhc---CC-CCCCccCC
Q 030807 87 SCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAY---DQ-KTCPLCRT 132 (171)
Q Consensus 87 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~---~~-~~CP~Cr~ 132 (171)
.|.+|...-.. ..+.....|...||..|+..-+.. +. =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46677655333 344455579999999999865532 11 35888864
No 151
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=29.58 E-value=4 Score=26.06 Aligned_cols=18 Identities=22% Similarity=0.717 Sum_probs=13.6
Q ss_pred eecCCCCCcccHHHHHHH
Q 030807 102 RRLTNCRHIFHRGCLDRW 119 (171)
Q Consensus 102 ~~l~~C~H~Fh~~Ci~~w 119 (171)
...+.|++.||..|-..|
T Consensus 44 v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECTTTCCEECSSSCSBC
T ss_pred eEeCCCCCccccccCCch
Confidence 356569999988887766
No 152
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=29.55 E-value=20 Score=25.75 Aligned_cols=61 Identities=10% Similarity=0.195 Sum_probs=36.2
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCchhhHHHHHHHHhc
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQDSFNERLWAAS 151 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~ 151 (171)
+-..|..|...+...... .=+..||..|..+- -...|..|..++.+.+......+..|+..
T Consensus 86 ~CF~C~~C~~~L~~~~f~----~~g~~yC~~~y~~~---f~~kC~~C~~~I~~~~~v~~a~~~~~H~~ 146 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFS----RGESVYCKDDFFKR---FGTKCAACQLGIPPTQVVRRAQDFVYHLH 146 (182)
T ss_dssp STTSCTTTCCCCSSCCEE----ETTEEECHHHHHHT---TSCCCTTTCCCCCSSCCCCEETTEECCTT
T ss_pred ccCccCCCCCccCCCcee----ECCEeeecCccccc---cccccccCCCccCCCceEEecCCCCEEeC
Confidence 345577776666554322 24566777776553 45679999988876554333344555543
No 153
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=29.50 E-value=29 Score=20.80 Aligned_cols=41 Identities=7% Similarity=-0.017 Sum_probs=18.8
Q ss_pred ccccccccccccccceeeecCCCCCcccH-HHHHHHHhcCCCCCCccC
Q 030807 85 PDSCAVCLYEFEEQDEIRRLTNCRHIFHR-GCLDRWMAYDQKTCPLCR 131 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~-~Ci~~wl~~~~~~CP~Cr 131 (171)
-..|..|...+....... .=+..||. .|..+. -...|-.|.
T Consensus 27 CF~C~~C~~~L~~~~~~~---~~g~~yC~~~cy~~~---f~~~C~~C~ 68 (76)
T 1iml_A 27 CLKCEKCGKTLTSGGHAE---HEGKPYCNHPCYSAM---FGPKGFGRG 68 (76)
T ss_dssp TCBCTTTCCBCCTTTEEE---ETTEEEETTTHHHHH---SSCCCSSCC
T ss_pred CCCccccCccCCCCceEC---cCCeEeeCHHHHHHH---hCccCCCcC
Confidence 345666665555432221 13445555 355443 234455554
No 154
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=29.07 E-value=52 Score=20.01 Aligned_cols=48 Identities=25% Similarity=0.591 Sum_probs=30.1
Q ss_pred ccccccccccccccceeeecCCCCCcccHHHHHHHHh----cCCCCCCccCCC
Q 030807 85 PDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMA----YDQKTCPLCRTP 133 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~----~~~~~CP~Cr~~ 133 (171)
...| ||...+..+........|.-=||..|+.---. ...-.||.|+..
T Consensus 10 ~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 10 PVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3345 78876654445555556998899999853211 023469999643
No 155
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.85 E-value=61 Score=19.67 Aligned_cols=47 Identities=19% Similarity=0.437 Sum_probs=30.5
Q ss_pred ccccccccccccccceeeecCCCCCcccHHHHHHHH--------hcCCCCCCccCCC
Q 030807 85 PDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWM--------AYDQKTCPLCRTP 133 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl--------~~~~~~CP~Cr~~ 133 (171)
...| +|....... .+.....|..=||..|+.--. ....-.||.|+..
T Consensus 16 ~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 4557 898876533 344555699889999984211 1146679999643
No 156
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=28.56 E-value=9.4 Score=27.73 Aligned_cols=64 Identities=11% Similarity=0.231 Sum_probs=33.9
Q ss_pred Cccccccccccccc-cceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCchhhHHHHHHHHh
Q 030807 84 PPDSCAVCLYEFEE-QDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDMQDSFNERLWAA 150 (171)
Q Consensus 84 ~~~~C~ICl~~~~~-~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~ 150 (171)
+-..|..|...+.. +.... . .=+..||..|..+-+. .+..|..|..++.+.+......++.|+.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~-~-~~g~~yC~~cy~~~~~-~~~~C~~C~~~I~~~e~~i~a~~~~~H~ 95 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSY-T-KSGMILCRNDYIRLFG-NSGACSACGQSIPASELVMRAQGNVYHL 95 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEE-E-ETTEEECHHHHHHHHS-CCEECTTTCCEECTTSEEEEETTEEECG
T ss_pred cCcccCCCCcccccCCceEE-E-eCCccccccccccccc-cCCccccCCCccccCcEEEEcCCCEEeC
Confidence 34567777776654 21111 1 2456677777766542 1226888877776544322233444443
No 157
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.80 E-value=42 Score=19.36 Aligned_cols=39 Identities=21% Similarity=0.478 Sum_probs=25.8
Q ss_pred ccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCC
Q 030807 85 PDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIP 136 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 136 (171)
...|+.|-..+. +..+. .-+..||..| ..|..|+.++..
T Consensus 5 ~~~C~~C~~~I~-~~~~~---a~~~~~H~~C---------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVVN---AMGKQWHVEH---------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEEC---CTTSBEETTT---------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEEE---ECccccccCc---------CEECCCCCCCCC
Confidence 356888888777 44332 3567788665 357888887754
No 158
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=26.90 E-value=47 Score=27.35 Aligned_cols=46 Identities=17% Similarity=0.474 Sum_probs=29.8
Q ss_pred CccccccccccccccceeeecC--CCCCcccHHHHHHHHhc---------CCCCCCccCCC
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLT--NCRHIFHRGCLDRWMAY---------DQKTCPLCRTP 133 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~Fh~~Ci~~wl~~---------~~~~CP~Cr~~ 133 (171)
.+..|.+|-+. ..+..+. .|...||..||...+-. ..=+|=+|...
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 45567777653 2333443 69999999999999811 23368888643
No 159
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=26.84 E-value=35 Score=20.38 Aligned_cols=18 Identities=17% Similarity=0.551 Sum_probs=12.4
Q ss_pred CCCCccccccccc-ccccc
Q 030807 81 LVDPPDSCAVCLY-EFEEQ 98 (171)
Q Consensus 81 ~~~~~~~C~ICl~-~~~~~ 98 (171)
...+...|.||.. .|.++
T Consensus 5 ~~~d~~~C~iC~KTKFADG 23 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADG 23 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSS
T ss_pred ccCCcchhhhhccceeccC
Confidence 3456778999987 45554
No 160
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.69 E-value=31 Score=21.18 Aligned_cols=40 Identities=23% Similarity=0.530 Sum_probs=27.4
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCC
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFI 135 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~ 135 (171)
....|+-|-..+..++.+. .-+..||..| ..|-.|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~---a~~~~wH~~C---------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLL---ALDKQWHVSC---------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEE---ETTEEECTTT---------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEE---ECCccccccc---------CCcCcCCCCcC
Confidence 4567999988887665554 2456788665 45788887775
No 161
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=26.29 E-value=36 Score=22.80 Aligned_cols=24 Identities=21% Similarity=0.591 Sum_probs=17.0
Q ss_pred ecCCCCCcccHHHHHHHHhcCCC-CCCccCCC
Q 030807 103 RLTNCRHIFHRGCLDRWMAYDQK-TCPLCRTP 133 (171)
Q Consensus 103 ~l~~C~H~Fh~~Ci~~wl~~~~~-~CP~Cr~~ 133 (171)
.+..|||.|-. ..... .||.|..+
T Consensus 75 ~C~~CG~~~e~-------~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 75 ECKDCSHVFKP-------NALDYGVCEKCHSK 99 (119)
T ss_dssp ECSSSSCEECS-------CCSTTCCCSSSSSC
T ss_pred EcCCCCCEEeC-------CCCCCCcCccccCC
Confidence 44569998875 22456 89999876
No 162
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=25.86 E-value=4.6 Score=25.46 Aligned_cols=14 Identities=29% Similarity=0.838 Sum_probs=12.6
Q ss_pred CCCCcccHHHHHHH
Q 030807 106 NCRHIFHRGCLDRW 119 (171)
Q Consensus 106 ~C~H~Fh~~Ci~~w 119 (171)
.|++.||..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 69999999998887
No 163
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=25.74 E-value=46 Score=19.35 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=9.1
Q ss_pred Cccccccccccccc
Q 030807 84 PPDSCAVCLYEFEE 97 (171)
Q Consensus 84 ~~~~C~ICl~~~~~ 97 (171)
+-..|+.|...+..
T Consensus 9 ~iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 9 EILACPACHAPLEE 22 (56)
T ss_dssp TSCCCSSSCSCEEE
T ss_pred hheeCCCCCCccee
Confidence 44568888776544
No 164
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.55 E-value=59 Score=18.96 Aligned_cols=40 Identities=18% Similarity=0.471 Sum_probs=24.8
Q ss_pred ccccccccccccccc-eeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCC
Q 030807 85 PDSCAVCLYEFEEQD-EIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIP 136 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~-~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 136 (171)
...|+.|-..+...+ .+. .-+..||..| ..|-.|..++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~---a~~~~~H~~C---------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE---YGGQTWHEHC---------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC---STTCCEETTT---------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEE---ECccccCccc---------CeECCCCCcCCC
Confidence 346888888777542 332 3566778655 347777777654
No 165
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=24.61 E-value=18 Score=18.18 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=9.0
Q ss_pred CCCCCccCCCCC
Q 030807 124 QKTCPLCRTPFI 135 (171)
Q Consensus 124 ~~~CP~Cr~~~~ 135 (171)
+..||+|+...+
T Consensus 3 k~~CpvCk~q~P 14 (28)
T 2jvx_A 3 DFCCPKCQYQAP 14 (28)
T ss_dssp CEECTTSSCEES
T ss_pred cccCccccccCc
Confidence 457999998764
No 166
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=24.17 E-value=47 Score=20.26 Aligned_cols=32 Identities=16% Similarity=0.478 Sum_probs=23.0
Q ss_pred CCccccccccccccccceeeecCCC-CCcccHHHHHHH
Q 030807 83 DPPDSCAVCLYEFEEQDEIRRLTNC-RHIFHRGCLDRW 119 (171)
Q Consensus 83 ~~~~~C~ICl~~~~~~~~~~~l~~C-~H~Fh~~Ci~~w 119 (171)
++..-|.||.++ ..++-+ .| +-.||..|..+-
T Consensus 6 ee~pWC~ICneD----AtlrC~-gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCA-GCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEET-TTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEec-CCCCceehHHHHHHH
Confidence 445669999887 335444 58 788999998774
No 167
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=23.36 E-value=25 Score=21.34 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=30.1
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHh---cCCCCCCccCC
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMA---YDQKTCPLCRT 132 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~---~~~~~CP~Cr~ 132 (171)
....| +|......+........|..=||..|+.---. ...-.||.|+.
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 44568 69887655554555556888899999753211 12345888854
No 168
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.72 E-value=73 Score=21.04 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=35.4
Q ss_pred ccccccccccccc--cceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCCch
Q 030807 85 PDSCAVCLYEFEE--QDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPDDM 139 (171)
Q Consensus 85 ~~~C~ICl~~~~~--~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 139 (171)
-..|..|-..+.. .... . .=+..||..|..+.+. .+..|-.|..++.+..+
T Consensus 32 CF~C~~C~~~L~~~~~~~~--~-~~g~~yC~~cy~~~f~-~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSY--T-KSGMILCRNDYIRLFG-NSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHCCSSSCCCTTTSEECCE--E-ETTEEECHHHHHHHHC-CCCSSSCSSCCSCCEES
T ss_pred CCCcCCCCCcccccCCeEE--E-ECCeeecHHHHHHHcC-CCCccccCCCCcCchhe
Confidence 4578889888752 1111 1 3667899999988764 34489999999886554
No 169
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=22.46 E-value=45 Score=19.36 Aligned_cols=42 Identities=21% Similarity=0.604 Sum_probs=28.0
Q ss_pred CccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCC
Q 030807 84 PPDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIP 136 (171)
Q Consensus 84 ~~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 136 (171)
....|+.|-..+...+.+.. .-+..||..|. .|-.|..++..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~--~~~~~~H~~CF---------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN--SNGELYHEQCF---------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE--ETTEEEETTTS---------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEE--eCcCeeCcCCC---------cccCCCCCCCC
Confidence 34579999998877655422 24567887664 47788877643
No 170
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.91 E-value=54 Score=23.53 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=16.6
Q ss_pred eeecCCCCCcccHHHHHHHHhcCCCCCCccCCC
Q 030807 101 IRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTP 133 (171)
Q Consensus 101 ~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~ 133 (171)
..+++.|||++-. .....||+|..+
T Consensus 138 ~~~C~~CG~i~~~--------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAVD--------EAPEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEES--------CCCSBCTTTCCB
T ss_pred eeEeCCCCCeeCC--------CCCCCCCCCCCC
Confidence 3456679997651 234589999864
No 171
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=21.62 E-value=71 Score=20.23 Aligned_cols=34 Identities=24% Similarity=0.494 Sum_probs=21.3
Q ss_pred ccccccccccccccceee-ecCCCCCcccHHHHHHH
Q 030807 85 PDSCAVCLYEFEEQDEIR-RLTNCRHIFHRGCLDRW 119 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~~~~-~l~~C~H~Fh~~Ci~~w 119 (171)
...|.||.+. ..+..+. ..+.|.-.||..|-..-
T Consensus 17 ~l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 17 KLTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHHH
T ss_pred cCCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHHC
Confidence 3569999653 1233331 12358899999998663
No 172
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.83 E-value=66 Score=18.71 Aligned_cols=40 Identities=18% Similarity=0.453 Sum_probs=24.0
Q ss_pred cccccccccccccc-eeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCC
Q 030807 86 DSCAVCLYEFEEQD-EIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPD 137 (171)
Q Consensus 86 ~~C~ICl~~~~~~~-~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 137 (171)
..|+.|-..+...+ .+. .-+..||..| ..|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~~~---a~~~~~H~~C---------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME---YKGSSWHETC---------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE---ETTEEEETTT---------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEE---ECcCeecccC---------CcccccCCccCCC
Confidence 45888887777643 332 2456677555 3477777766543
No 173
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.79 E-value=1.1e+02 Score=18.31 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=25.3
Q ss_pred ccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCC
Q 030807 85 PDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPD 137 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 137 (171)
...|+-|-..+. +..+. .-+..||..| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLI---FKNDPYHPDH---------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCCC---CSSSCCCTTT---------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEEE---ECcceeCCCC---------CEeCCCCCccCCC
Confidence 456888888776 33332 3566777555 4577888777543
No 174
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.65 E-value=89 Score=18.69 Aligned_cols=42 Identities=19% Similarity=0.460 Sum_probs=27.4
Q ss_pred ccccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCCCC
Q 030807 85 PDSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFIPD 137 (171)
Q Consensus 85 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 137 (171)
...|+.|-..+..++.+.. .-+..||..| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C---------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE--YKGTVWHKDC---------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE--CSSCEEETTT---------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEE--ECcccccccc---------CchhhCCCccCCC
Confidence 3578889888776554321 3567788666 3577888777543
No 175
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.09 E-value=81 Score=18.21 Aligned_cols=37 Identities=19% Similarity=0.555 Sum_probs=22.0
Q ss_pred cccccccccccccceeeecCCCCCcccHHHHHHHHhcCCCCCCccCCCCC
Q 030807 86 DSCAVCLYEFEEQDEIRRLTNCRHIFHRGCLDRWMAYDQKTCPLCRTPFI 135 (171)
Q Consensus 86 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~wl~~~~~~CP~Cr~~~~ 135 (171)
..|+.|-..+... .+. .-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~-~~~---a~~~~~H~~C---------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTG-GVT---YREQPWHKEC---------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSS-EEE---SSSSEEETTT---------SBCSSSCCBCT
T ss_pred CCCcccCCeeccc-eEE---ECccccCCCC---------CccCCCCCcCC
Confidence 4577777766542 332 3566777555 34677777664
Done!